Citrus Sinensis ID: 020428

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNENRFLVNGSR
Secondary Structure (PSIPRED)
ccccccEEEEEccccccHHHHHHHHHccccEEEccHHHHHHHHHcccccccccccccccccccccEEEEccccccccEEEEEccccHHHHHHHHHHHcccccEEEEcccccHHHHHcccccccccccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHcccEEEEcccccccccccccccHHHHHHHHHccccEEEccccccHHHHHHHHHHHcccHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccHHHHHHHHHHcccEEEEEEEccccHHcccHHHHHHHccHHHHccccccHEEEccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEcccccccHEcccccHHHHHccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEcccHHHHccccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccEEEEEcccccccEHEEccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mdyqnklvlapmvrvgtLPFRLLAAQygaditygeeiidhKLLKCERRVneyigstdfvekgtdsvvFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAidinmgcpksfsvsggmgaallskpELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVhgrkvadrprdpakwgEIADIVAALsipviangdvfeyddfqriktaAGASSVMAARGALWnasifssqgklhweDVKREYVRKSIFWENNVKSTKHTLKEMIMHYsslelpegkaiikSETLADIAKLYEEEKYYQFVNENRFLVNGSR
Flexible Loop (DISEMBL)
mdyqnklvlapmvrvGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIgstdfvekGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRllkssqdtveLARRIEktgvsalavhgrkvadrprdpaKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIfssqgklhweDVKREYVrksifwennvksTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEkyyqfvnenrflvngsr
Low Complexity Region (SEG)
MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNENRFLVNGSR
Disordered region (IsUnstruct)
*****KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNENRFLV****
Disordered Region (DISOPRED)
MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVN**********
Disordered Region (DISEMBL)
MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNENRFLVNGSR
Disordered Region (DISPRO)
MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNENRF******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNENRFLVNGSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q9NX74	493	tRNA-dihydrouridine(20) s	yes	no	0.944	0.624	0.501	4e-85
Q9D7B1	493	tRNA-dihydrouridine(20) s	yes	no	0.944	0.624	0.498	2e-83
O74731	479	tRNA-dihydrouridine(20) s	yes	no	0.923	0.628	0.384	2e-55
P53720	384	tRNA-dihydrouridine(20) s	yes	no	0.849	0.721	0.352	1e-42
Q32M08	324	tRNA-dihydrouridine(20a/2	no	no	0.665	0.669	0.352	8e-32
O95620	317	tRNA-dihydrouridine(20a/2	no	no	0.665	0.684	0.348	3e-31
Q54CU9	671	tRNA-dihydrouridine(47) s	no	no	0.717	0.348	0.322	3e-29
O74553	326	tRNA-dihydrouridine(20a/2	no	no	0.779	0.779	0.313	1e-28
Q06063	367	tRNA-dihydrouridine(20a/2	no	no	0.711	0.632	0.300	2e-27
Q6P1R4	473	tRNA-dihydrouridine(16/17	no	no	0.809	0.558	0.294	6e-26

>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2L PE=1 SV=1

 Score =  315 bits (806), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/315 (50%), Positives = 215/315 (68%), Gaps = 7/315 (2%)

Query: 3   YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
           Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE+ID K+++C+R VNE + + DFV   
Sbjct: 10  YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAP- 68

Query: 63  TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
            D VVFRTC +E+N VVFQMGTSDA RAL  A++V  DVA ID+NMGCPK +S  GGMGA
Sbjct: 69  DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGA 128

Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
           ALLS P+ I  IL+ L +    PVTCKIR+L S +DT+ L +RIE+TG++A+AVHGRK  
Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188

Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
           +RP+ P     I  I   LSIPVIANG     + +Y D +  + A  ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWN 248

Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
            SIF  +G    E+V ++Y+R ++ ++N+  +TK+ L +M+     LE P+G+ +  +++
Sbjct: 249 PSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306

Query: 299 LADIAKLYEEEKYYQ 313
             +I + +    +Y+
Sbjct: 307 SREICEAFGLGAFYE 321

Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus2l PE=1 SV=1

 Score =  309 bits (791), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/315 (49%), Positives = 213/315 (67%), Gaps = 7/315 (2%)

Query: 3   YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
           Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE+ID K+L+C+R VNE + + DFV   
Sbjct: 10  YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69

Query: 63  TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
            D VVFRTC +E++ VVFQMGTSDA RAL  A++V  DVA ID+NMGCPK +S  GGMGA
Sbjct: 70  -DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128

Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
           ALLS P+ I  IL+ L +    PVTCKIR+L S +DT+ L +RIE+TG+SA+AVHGR   
Sbjct: 129 ALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRD 188

Query: 183 DRPRDPAKWGEIADIVAALSIPVIANG----DVFEYDDFQRIKTAAGASSVMAARGALWN 238
           +RP+ P     I  I   LSIPVIANG     + ++ D +  + A  ASSVM AR A+WN
Sbjct: 189 ERPQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWN 248

Query: 239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
            SIF   G    E+V ++Y+R ++ ++N+  +TK+ L +M+     LE P+G+ +  +++
Sbjct: 249 PSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306

Query: 299 LADIAKLYEEEKYYQ 313
             +I + +    +Y+
Sbjct: 307 SQEICEAFGLGAFYE 321

Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O74731|DUS2_SCHPO tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus2 PE=3 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 180/320 (56%), Gaps = 19/320 (5%)

Query: 1   MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK---CERRVNEYIGSTD 57
           ++Y NK+ LAPMVR+G LP RLLA +YGA++ +G EI+D  LL     ER VN+ I   D
Sbjct: 4   LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63

Query: 58  FVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVS 117
           FV+  ++ V+FR    E N ++FQ+G++    A+ AAK+V  DVA ID+N GCPK FSV 
Sbjct: 64  FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123

Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVP----VTCKIRLLKSSQDTVELARRIEKTGVSA 173
            GMGA LL   + +  IL  L   +  P    ++CKIRLL++ +DT++L  RI  TGV A
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRA 183

Query: 174 LAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVM 230
           + VH R    R  +PA    +++IV       + ++ NGDV  Y+D   +    G   V+
Sbjct: 184 ITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIEKYGVDGVL 243

Query: 231 AARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEG 290
            AR A  N S F  +G L    V  E+++ ++  +NN  +TK+ L +++         +G
Sbjct: 244 IARAAERNVSCFRIEGPLSSFKVAEEFLKMALEVDNNFGNTKYCLNQIM---------QG 294

Query: 291 KAIIKSETLADIAKLYEEEK 310
                   LA  AK YE+ K
Sbjct: 295 SFRKNVRQLAQTAKTYEDLK 314

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 9

EC: 1

>sp|P53720|DUS2_YEAST tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMM1 PE=1 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 21/298 (7%)

Query: 3   YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDF---- 58
           Y  KLVLAPMVR G LP RL+A  +GAD+ +  EIID KL++C R+ N  + + D+    
Sbjct: 4   YAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPS 63

Query: 59  -VEKGTDSVVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSV 116
            V+   +++VFRT  + E + ++FQ+G++    A  AA  V  DV+ IDIN GCPK FS+
Sbjct: 64  KVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSI 123

Query: 117 SGGMGAALLSKPELIHDILTMLKRNL----DVPVTCKIRLLKSSQDTVELARRIEKTGVS 172
             GMG+ALL  P+ +  IL  L +N+      P++ KIRLL + QDT++L +R+  TG++
Sbjct: 124 HSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGIT 183

Query: 173 ALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV 229
            L VH RK   R R+        EI +I  A ++ +I NG + +   F  ++     ++ 
Sbjct: 184 NLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWKNTN 243

Query: 230 ---MAARGALWNASIF-----SSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMI 279
              M A  A  + ++F      S+    W    RE+++ +  ++N++ +TK+ L  ++
Sbjct: 244 IGGMIAECAERDPTVFDHTSKPSEDGPSWVVACREFIQWATKFDNHIGNTKYMLSRIV 301

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20 in cytoplasmic tRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 9

EC: 1

>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1

 Score =  137 bits (346), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 125/241 (51%), Gaps = 24/241 (9%)

Query: 8   VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
           V APMVR   L FR L  +Y  D+ Y   II                + DFV   K  DS
Sbjct: 30  VCAPMVRYSKLAFRTLVRKYSCDLCYTPMII----------------AADFVRSIKARDS 73

Query: 66  VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
               T +Q    ++ Q   +DA     AA +VC     IDIN GCP+ ++++ G GA L+
Sbjct: 74  EF--TTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLI 131

Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
           +KPEL+HD++  ++  ++ P   V+ KIR+      T++L R+ E TGVS + VHGR V 
Sbjct: 132 NKPELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVE 191

Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
           +R   P  +  I  I   +SIP++ANGD+    + + +    G   VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMF 250

Query: 243 S 243
           +
Sbjct: 251 A 251

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 24/241 (9%)

Query: 8   VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE--KGTDS 65
           V APMVR   L FR L  +Y  D+ Y   I+                + DFV+  K  DS
Sbjct: 30  VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVKSIKARDS 73

Query: 66  VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
               T +Q    ++ Q   +DA     AA++VC     IDIN GCP+ ++++ G GA L+
Sbjct: 74  EF--TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLI 131

Query: 126 SKPELIHDILTMLKRNLDVP---VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
           +KPEL+ D++  ++  ++ P   V+ KIR+    + TV+L ++ E TGVS + VHGR   
Sbjct: 132 NKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAE 191

Query: 183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
           +R   P  +  I  I   +SIPVIANGD+    + + +    G   VM ARG L N ++F
Sbjct: 192 ER-HQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMF 250

Query: 243 S 243
           +
Sbjct: 251 A 251

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium discoideum GN=dus3l PE=3 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 23/257 (8%)

Query: 1   MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
           ++++N+L+LAP+  VG LPFR +  + GADIT GE  +  KLL+                
Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLE---------------- 363

Query: 61  KGTDS-VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVS 117
            GT S +     H   +    Q+  S    A+  A+ +  ++ A  +DIN GCP     +
Sbjct: 364 -GTKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCN 422

Query: 118 GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV--ELARRIEKTGVSALA 175
            G GAAL+ +P+ +  +L  +  +L  P T KIR+ KS       +L   + + G  A+ 
Sbjct: 423 MGAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVT 482

Query: 176 VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA 235
           +HGR  A R    A W  +       SIP+I NGD++ Y D   I  ++  SS+M ARGA
Sbjct: 483 LHGRSRAQRYSRLANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGA 542

Query: 236 LWNASIFSS-QGKLHWE 251
           L    IF+  + K  W+
Sbjct: 543 LIKPWIFTEIKEKREWD 559

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus4 PE=3 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 126/274 (45%), Gaps = 20/274 (7%)

Query: 8   VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
           + APMVR   LPFR L   Y  DI Y   I+  + L  + R        DF     D+  
Sbjct: 23  IAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRY------FDFSTNDADA-- 74

Query: 68  FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
                     ++ Q G  D V    AA++V   V  I IN GCP+++++  G+G+ALL +
Sbjct: 75  ---------SLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDE 125

Query: 128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
           PE +H ++  +K  L        KIR+ K    T  L + IEK+G   + VHGR   DR 
Sbjct: 126 PEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRS 185

Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
             P     I ++   + IPV+ANGDV        I        +M+ARG L N ++F+  
Sbjct: 186 SFPVNLDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGY 245

Query: 246 GKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMI 279
            +  W  V+R ++  S  +  N     H L  M+
Sbjct: 246 EETPWGCVER-FLWYSTSYSLNFHLFYHHLTTMM 278

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 9

EC: 0

>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 21/253 (8%)

Query: 8   VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
           +  PMVR   LPFR L  +Y  DI Y   I+  + ++     NE+   +D      D+  
Sbjct: 42  IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVR-----NEHARISDLSTNNEDT-- 94

Query: 68  FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
                     ++ Q+G ++    L   +MV      I IN GCP    +  G+G AL+  
Sbjct: 95  ---------PLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYN 145

Query: 128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
            +L+  ++  +K      + +  KIR+ ++  +TVEL R++   GV  + +HGR    R 
Sbjct: 146 SDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRS 205

Query: 186 RDPAKWGEIADIVAALS---IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
             PA    I  I+  +S   +PVIANGD F+  D +RI    GA  VMA RG L N ++F
Sbjct: 206 SQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALF 265

Query: 243 SSQGKLHWEDVKR 255
           +      W  +++
Sbjct: 266 AGYTTCPWGCIEK 278

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20a and U20b in cytoplasmic tRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 9

EC: 0

>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 31/295 (10%)

Query: 8   VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV 67
           V+APMV    L +RLL+ ++GA + Y   +              ++   ++ +   +++ 
Sbjct: 20  VVAPMVDQSELAWRLLSRRHGAQLCYTPML----------HAQVFVRDANYRK---ENLY 66

Query: 68  FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
              C ++R  +V Q   +D    + AA +      AID+N+GCP+  +  G  GA L  +
Sbjct: 67  CEVCPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125

Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP- 185
            +L+  ++ +    L VPVTCKIR+      TV  A+ +EK G   L VHGR K    P 
Sbjct: 126 WDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPL 185

Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
              A W  I  +  A++IPV ANG++    D +R     G   VM+A G L N ++F  +
Sbjct: 186 SGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGR 245

Query: 246 GKLHWE------DVKRE------YVRKSIF--WENNVKSTKHTLKEMIMHYSSLE 286
               WE      D+ RE      YVR  +F  W + ++     L+E +    +LE
Sbjct: 246 SPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQ-VHQELREELAKVKTLE 299

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2114713	329	AT3G49640 [Arabidopsis thalian	0.957	0.948	0.785	4.4e-132
UNIPROTKB|Q9NX74	493	DUS2L "tRNA-dihydrouridine(20)	0.944	0.624	0.501	2.7e-77
UNIPROTKB|I3LES5	493	DUS2L "Uncharacterized protein	0.944	0.624	0.504	9e-77
UNIPROTKB|Q0VC60	493	DUS2L "Uncharacterized protein	0.944	0.624	0.498	3.1e-76
UNIPROTKB|E2RKU2	493	DUS2L "Uncharacterized protein	0.944	0.624	0.498	3.1e-76
MGI|MGI:1913619	493	Dus2l "dihydrouridine synthase	0.944	0.624	0.498	8.1e-76
RGD|1305612	493	Dus2l "dihydrouridine synthase	0.944	0.624	0.498	1.3e-75
UNIPROTKB|E1C4F6	493	DUS2L "Uncharacterized protein	0.944	0.624	0.490	3.5e-75
DICTYBASE|DDB_G0283877	402	dus2l "tRNA-dihydrouridine syn	0.966	0.783	0.476	1.9e-74
ZFIN|ZDB-GENE-100922-233	504	dus2l "dihydrouridine synthase	0.923	0.597	0.493	4e-74

TAIR|locus:2114713 AT3G49640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 245/312 (78%), Positives = 280/312 (89%)

Query:     1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
             MDYQNKLVLAPMVRVGTL FR+LAA+YGADITYGEEIIDHKL+KCERR+N   G+++FVE
Sbjct:     1 MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVE 60

Query:    61 KGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGM 120
             KGTD+VVF TC +E++ VVFQMGTSDAVRAL A+++VC DVA IDINMGCPK+FS+ GGM
Sbjct:    61 KGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGM 120

Query:   121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK 180
             GAALLSKPELIHDIL  LKRNLDVPVTCKIRLLKS  DTVELARRIEK GV ALAVHGRK
Sbjct:   121 GAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRK 180

Query:   181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240
             +ADRPRDPAKW EIAD+VAALSIPVIANGDV EYDDF RIKTA GA+SVM ARGA+WNAS
Sbjct:   181 IADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNAS 240

Query:   241 IFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLA 300
             IFS +GK HWEDVK++Y+RKSI W N+VKSTK+T+KEMI H+S LELPEGK+I K++TL 
Sbjct:   241 IFSPKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKSINKADTLE 300

Query:   301 DIAKLYEEEKYY 312
             D+A+LY+ E Y+
Sbjct:   301 DLARLYDLEDYF 312

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006808 "regulation of nitrogen utilization" evidence=ISS

GO:0008033 "tRNA processing" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q9NX74 DUS2L "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like" [Homo sapiens (taxid:9606)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 158/315 (50%), Positives = 215/315 (68%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE+ID K+++C+R VNE + + DFV   
Sbjct:    10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              D VVFRTC +E+N VVFQMGTSDA RAL  A++V  DVA ID+NMGCPK +S  GGMGA
Sbjct:    70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGA 128

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
             ALLS P+ I  IL+ L +    PVTCKIR+L S +DT+ L +RIE+TG++A+AVHGRK  
Sbjct:   129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188

Query:   183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
             +RP+ P     I  I   LSIPVIANG     + +Y D +  + A  ASSVM AR A+WN
Sbjct:   189 ERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWN 248

Query:   239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
              SIF  +G    E+V ++Y+R ++ ++N+  +TK+ L +M+     LE P+G+ +  +++
Sbjct:   249 PSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306

Query:   299 LADIAKLYEEEKYYQ 313
               +I + +    +Y+
Sbjct:   307 SREICEAFGLGAFYE 321

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|I3LES5 DUS2L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 159/315 (50%), Positives = 215/315 (68%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE+ID K+L+C+R VNE + + DFV   
Sbjct:    10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTVDFVAPD 69

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              D VVFRTC +E++ VVFQMGTSDA RAL  AK+V  DVA ID+NMGCPK +S  GGMGA
Sbjct:    70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGA 128

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
             ALLS P+ I  IL+ L +    PVTCKIRLL S +DT+ L +RIE+TG++A+AVHGRK  
Sbjct:   129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188

Query:   183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
             +RP+ P     I  I   LSIPVIANG     + +Y D +  + A  ASSVM AR A+WN
Sbjct:   189 ERPQHPVSCEAIKAIAETLSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWN 248

Query:   239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
              S+F  +G    E+V ++Y+R ++ ++N+  +TK+ L +M+     LE P+G+ +  +++
Sbjct:   249 PSVFLKEGPRPLEEVMQKYIRYAVQYDNHHTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306

Query:   299 LADIAKLYEEEKYYQ 313
               +I + +    +Y+
Sbjct:   307 SQEICEAFGLGAFYK 321

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|Q0VC60 DUS2L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 157/315 (49%), Positives = 214/315 (67%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE++D K+L+C+R VNE + + DFV   
Sbjct:    10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTVDFVAPD 69

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              D VVFRTC +E++ VVFQMGTSDA RAL  A++V  DVA ID+NMGCPK +S  GGMGA
Sbjct:    70 -DRVVFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
             ALLS P+ I  IL+ L +    PVTCKIR+L S +DT+ L +RIE+TG++A+AVHGRK  
Sbjct:   129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188

Query:   183 DRPRDPAKWGEIADIVAALSIPVIANGDVFE----YDDFQRIKTAAGASSVMAARGALWN 238
             +RP+ P     I  I   LSIPVIANG   +    Y D +  + A  ASSVM AR A+WN
Sbjct:   189 ERPQHPVSCEAIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWN 248

Query:   239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
              SIF  +G    E+V ++Y+R ++ ++N+  +TK+ L +M+     LE P+G+ +  +++
Sbjct:   249 PSIFLKEGPRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306

Query:   299 LADIAKLYEEEKYYQ 313
               +I + +    +Y+
Sbjct:   307 SQEICEAFGLGAFYE 321

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|E2RKU2 DUS2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 157/315 (49%), Positives = 215/315 (68%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE+ID K+L+C+R VNE + + DFV   
Sbjct:    10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              + VVFRTC +E++ VVFQMGTSDA RAL  AK+V  DVA ID+NMGCPK +S  GGMGA
Sbjct:    70 -ERVVFRTCEREQSRVVFQMGTSDADRALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGA 128

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
             ALLS P+ I  IL+ L + +  PVTCKIR+L S +DT+ L +RIE+TG++A+ VHGRK  
Sbjct:   129 ALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKRE 188

Query:   183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
             +RP+ P     I  I   +SIPVIANG     + +Y D +  + A  ASSVM AR A+WN
Sbjct:   189 ERPQHPVSCEAIKAIAETVSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWN 248

Query:   239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
              SIF  +G    E+V ++Y+R ++ +EN+  +TK+ L +M+     LE P+G+ +  +++
Sbjct:   249 PSIFLKEGLRPLEEVMQKYIRYAVQYENHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306

Query:   299 LADIAKLYEEEKYYQ 313
               +I + +    +Y+
Sbjct:   307 SQEICEAFGLGAFYE 321

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

MGI|MGI:1913619 Dus2l "dihydrouridine synthase 2-like (SMM1, S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 157/315 (49%), Positives = 213/315 (67%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE+ID K+L+C+R VNE + + DFV   
Sbjct:    10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              D VVFRTC +E++ VVFQMGTSDA RAL  A++V  DVA ID+NMGCPK +S  GGMGA
Sbjct:    70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
             ALLS P+ I  IL+ L +    PVTCKIR+L S +DT+ L +RIE+TG+SA+AVHGR   
Sbjct:   129 ALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRD 188

Query:   183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
             +RP+ P     I  I   LSIPVIANG     + ++ D +  + A  ASSVM AR A+WN
Sbjct:   189 ERPQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWN 248

Query:   239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
              SIF   G    E+V ++Y+R ++ ++N+  +TK+ L +M+     LE P+G+ +  +++
Sbjct:   249 PSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRLLHAAQS 306

Query:   299 LADIAKLYEEEKYYQ 313
               +I + +    +Y+
Sbjct:   307 SQEICEAFGLGAFYE 321

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1305612 Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 157/315 (49%), Positives = 212/315 (67%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             Y NKL+LAPMVRVGTLP RLLA  YGADI Y EE+ID K+L+C R VNE + + DFV   
Sbjct:    10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTVDFVAPD 69

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              D VVFRTC +E++ VVFQMGTSDA RAL  A++V  DVA ID+NMGCPK +S  GGMGA
Sbjct:    70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
             ALLS P+ I  IL+ L +    PVTCKIR+L S +DT+ L +RIE+TG+SA+AVHGR   
Sbjct:   129 ALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRD 188

Query:   183 DRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGALWN 238
             +RP+ P     I  I   LSIPVIANG     + ++ D +  + A  ASSVM AR A+WN
Sbjct:   189 ERPQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWN 248

Query:   239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
              SIF   G    E+V ++Y+R ++ ++N+  +TK+ L +M+     LE P+G+ +  +++
Sbjct:   249 PSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE--QLESPQGRMLHAAQS 306

Query:   299 LADIAKLYEEEKYYQ 313
               +I + +    +Y+
Sbjct:   307 SQEICEAFGLGTFYE 321

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|E1C4F6 DUS2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 156/318 (49%), Positives = 216/318 (67%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             ++ K +LAPMVRVGTLP RLLA  YGADI Y EE+ID K+++C+R VNE + + DFV   
Sbjct:     9 FRGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEILETVDFVAPN 68

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              + VVFRTC +ER+ V+FQMG++DA RAL  AK+V  DVA IDINMGCPK +S  GGMGA
Sbjct:    69 -ERVVFRTCERERHRVIFQMGSADAGRALAVAKLVESDVAGIDINMGCPKEYSTKGGMGA 127

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR--- 179
             ALLS P+ I  ILT L + +  PVTCKIR+L S +DTV+L +RIEKTG++A+AVHGR   
Sbjct:   128 ALLSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTVDLVKRIEKTGIAAIAVHGRLER 187

Query:   180 KVADRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIKTAAGASSVMAARGA 235
             K  +RP+ P     I  I  A+SIPVIANG     + EY D +  + A  ASSVM AR A
Sbjct:   188 KKEERPQHPVHCDVIKAISEAVSIPVIANGGSHDFIKEYGDIETFQKATAASSVMIARAA 247

Query:   236 LWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIK 295
             +WN SIF  +G      V ++Y++ ++ ++N+  +TK+ L +M+     LE  +GK +  
Sbjct:   248 MWNPSIFRKEGPFPLRKVMQDYIKYAVRYDNHYTNTKYCLCQMLRE--QLETAQGKKLHV 305

Query:   296 SETLADIAKLYEEEKYYQ 313
             +++  +I + +E  ++Y+
Sbjct:   306 AQSTQEICEAFEMSEFYE 323

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0283877 dus2l "tRNA-dihydrouridine synthase 2-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 154/323 (47%), Positives = 214/323 (66%)

Query:     1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVE 60
             MDY NK ++APMVRVGT P R+LA  YG DI Y EE+ID KL+K  R VNE + + DF+ 
Sbjct:    28 MDYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIA 87

Query:    61 KGTDSVVFRTCHQE-RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGG 119
             K   ++ +RT  ++ RN  V Q+GT+ ++ AL AAK+VC D+ A+DINMGCPK FSV GG
Sbjct:    88 KD-QTLCYRTSEKDVRN--VLQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGG 144

Query:   120 MGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG 178
             MG+ALLSKPE I DILT LKRNL+ +P+TCKIRLL + Q+T++L R IE TGVSA+ VH 
Sbjct:   145 MGSALLSKPETIKDILTTLKRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHC 204

Query:   179 RKVADRPRDPAKWGEIADIV--AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
             R + +RPRDPA W  + +I+  A+ S+P+IANGD+FE+ D ++IK      S+M ARG +
Sbjct:   205 RMIPERPRDPAHWDRLENILSNASFSVPIIANGDIFEHADIEKIKKQTKVDSIMIARGVV 264

Query:   237 WNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKS 296
              N SIFS    +  + + +EY   +    N+  +TK+ +  M+   +     E KA+  +
Sbjct:   265 KNVSIFSKPSPIDLKQIIQEYTEIAYQTNNSPVNTKYVINSMLNENNITTNKEAKAMSSA 324

Query:   297 ETLADIAKLYE-EEKYYQFVNEN 318
                  I K++   +K+ QF  EN
Sbjct:   325 RDYDTITKIWGINDKFKQFCLEN 347

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA;ISS

GO:0008033 "tRNA processing" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA;ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

ZFIN|ZDB-GENE-100922-233 dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 152/308 (49%), Positives = 210/308 (68%)

Query:     3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKG 62
             ++ K +LAPMVRVGTLP RLLA  YGADI Y EE+ID K+ +CER  N+ + + DFV   
Sbjct:    15 FRQKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCERVENDVLQTIDFVAPD 74

Query:    63 TDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGA 122
              + V+FRTC +E   VVFQMGT+D  RAL  AK+V  DVAA+D+NMGCPK +S  GGMG+
Sbjct:    75 -ERVMFRTCSKESGRVVFQMGTADPERALAVAKLVENDVAAVDVNMGCPKEYSTKGGMGS 133

Query:   123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA 182
             ALLS PE I  ILT L + +  PVTCKIR+L + +DTV L +RIEKTGV+A+AVHGR   
Sbjct:   134 ALLSDPEKIEAILTTLVKGISKPVTCKIRILSTIEDTVNLVKRIEKTGVAAIAVHGRMKD 193

Query:   183 DRPRDPAKWGEIADIVAALSIPVIANG---DVF-EYDDFQRIKTAAGASSVMAARGALWN 238
             +RPR P     I  +  ++S+PVIANG   D+  E++D +  + + GASSVM AR A+WN
Sbjct:   194 ERPRHPVHCDYIQAVAQSVSVPVIANGGSSDIVKEFEDIETFRESTGASSVMLARAAMWN 253

Query:   239 ASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSET 298
              S+F  QG L  + V +EY+  ++ ++NN  +TK+ L +M+     +E P GK +  ++T
Sbjct:   254 PSVFRQQGALSVDQVMQEYITYAVRYDNNPFNTKYCLCQMLR--DRVESPFGKRLHAAQT 311

Query:   299 LADIAKLY 306
               +I +++
Sbjct:   312 NQEICEVF 319

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NX74	DUS2L_HUMAN	1, ., 3, ., 1, ., -	0.5015	0.9447	0.6247	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
cd02801	231	cd02801, DUS_like_FMN, Dihydrouridine synthase-lik	1e-96
COG0042	323	COG0042, COG0042, tRNA-dihydrouridine synthase [Tr	3e-60
pfam01207	309	pfam01207, Dus, Dihydrouridine synthase (Dus)	2e-55
TIGR00737	319	TIGR00737, nifR3_yhdG, putative TIM-barrel protein	2e-42
PRK10415	321	PRK10415, PRK10415, tRNA-dihydrouridine synthase B	8e-27
PRK10550	312	PRK10550, PRK10550, tRNA-dihydrouridine synthase C	9e-22
TIGR00742	318	TIGR00742, yjbN, tRNA dihydrouridine synthase A	8e-11
PRK11815	333	PRK11815, PRK11815, tRNA-dihydrouridine synthase A	3e-09
cd02911	233	cd02911, arch_FMN, Archeal FMN-binding domain	1e-07
cd02810	289	cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogena	2e-06
TIGR00736	231	TIGR00736, nifR3_rel_arch, TIM-barrel protein, put	2e-05
cd04740	296	cd04740, DHOD_1B_like, Dihydroorotate dehydrogenas	2e-05
cd02803	327	cd02803, OYE_like_FMN_family, Old yellow enzyme (O	2e-04
TIGR01037	300	TIGR01037, pyrD_sub1_fam, dihydroorotate dehydroge	3e-04
COG0167	310	COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle	4e-04
PRK07259	301	PRK07259, PRK07259, dihydroorotate dehydrogenase 1	0.002

>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain

 Score =  285 bits (731), Expect = 1e-96
 Identities = 102/247 (41%), Positives = 132/247 (53%), Gaps = 18/247 (7%)

Query: 6   KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
           KL+LAPMV V  LPFRLL  +YGAD+ Y E I    LL+  R+    +            
Sbjct: 1   KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLL------------ 48

Query: 66  VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAAL 124
               T + E   ++ Q+G SD      AAK+V       ID+NMGCP      GG GAAL
Sbjct: 49  ----TRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAAL 104

Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD-TVELARRIEKTGVSALAVHGRKVAD 183
           L  PEL+ +I+  ++  + +PVT KIRL    ++ T+ELA+ +E  G SAL VHGR    
Sbjct: 105 LKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ 164

Query: 184 RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
           R   PA W  IA+I  A+SIPVIANGD+F  +D  R     G   VM  RGAL N  +F 
Sbjct: 165 RYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR 224

Query: 244 SQGKLHW 250
              +L  
Sbjct: 225 EIKELLE 231

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231

>gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

 Score =  195 bits (497), Expect = 3e-60
 Identities = 92/248 (37%), Positives = 125/248 (50%), Gaps = 22/248 (8%)

Query: 1   MDYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFV 59
           ++ +N+++LAPM  V  LPFR LA + GA D+ Y E +    LL   ++    +      
Sbjct: 7   IELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLL-DELEE 65

Query: 60  EKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAA-IDINMGCPKSFSVSG 118
           E                 V  Q+G SD      AAK+  +  A  ID+N GCP    V G
Sbjct: 66  E---------------RPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKG 110

Query: 119 GMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD--TVELARRIEKTGVSALA 175
           G GAALL  PEL+ +I+  +   + D+PVT KIRL     D   +E+AR +E  G  AL 
Sbjct: 111 GAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALT 170

Query: 176 VHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARG 234
           VHGR  A     PA W  I ++  A+  IPVIANGD+   +D + +    GA  VM  RG
Sbjct: 171 VHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRG 230

Query: 235 ALWNASIF 242
           AL N  +F
Sbjct: 231 ALGNPWLF 238

Length = 323

>gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus)

 Score =  182 bits (463), Expect = 2e-55
 Identities = 96/283 (33%), Positives = 131/283 (46%), Gaps = 29/283 (10%)

Query: 8   VLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV 66
           +LAPM  V  LPFR L  +YGA D+   E +               +             
Sbjct: 1   LLAPMAGVTDLPFRRLVREYGAGDLVVTEMV----------TAKAQLRPEK--------Q 42

Query: 67  VFRTCHQERN--HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAA 123
                 +      +  Q+G SD      AAK+V       IDINMGCP      GG GAA
Sbjct: 43  RELMLPELEEPTPLAVQLGGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAA 102

Query: 124 LLSKPELIHDILTMLKRNLDVPVTCKIRLL--KSSQDTVELARRIEKTGVSALAVHGRKV 181
           LL  P+L+  I+  + + +D+PVT KIR+   +S ++ VE+ARR+E  G  AL VHGR  
Sbjct: 103 LLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTR 162

Query: 182 ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI 241
           A     PA W  I  +  A+SIPVIANGD+ + +D QR  +  GA  VM  RGAL N  +
Sbjct: 163 AQNYEGPADWDAIKQVKQAVSIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWL 222

Query: 242 FSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSS 284
           F+ Q  +       E+  +    E      +H L  +   Y  
Sbjct: 223 FAEQHTVKT----GEFDPRPPLAEEAEIVLEH-LSYLEEFYGE 260

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309

>gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family

 Score =  148 bits (376), Expect = 2e-42
 Identities = 82/243 (33%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 5   NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
           +++VLAPM  V   PFR L A+YGA +T  E +    ++                   + 
Sbjct: 8   SRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYD-----------------SQ 50

Query: 65  SVVFRTCHQER-NHVVFQMGTSDAVRALTAAKMVCKDVAA-IDINMGCPKSFSVSGGMGA 122
             +      E    +  Q+  SD      AAK+  +  A  IDINMGCP       G G+
Sbjct: 51  RTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGS 110

Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGRK 180
           ALL  P+LI  I+  +   +D+PVT KIR+    +  + VE AR  E  G  A+ +HGR 
Sbjct: 111 ALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRT 170

Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240
            A      A W  IA +  A+ IPVI NGD+F  +D + +    G   VM  RGAL N  
Sbjct: 171 RAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPW 230

Query: 241 IFS 243
           +F 
Sbjct: 231 LFR 233

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319

>gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional

 Score =  107 bits (268), Expect = 8e-27
 Identities = 79/242 (32%), Positives = 114/242 (47%), Gaps = 21/242 (8%)

Query: 5   NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
           N+L+ APM  +   PFR L  + GA +T                V+E + S   V + +D
Sbjct: 10  NRLIAAPMAGITDRPFRTLCYEMGAGLT----------------VSEMMSSNPQVWE-SD 52

Query: 65  SVVFRTCHQERNHV-VFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGA 122
               R  H +   +   Q+  SD      AA++ V      IDINMGCP         G+
Sbjct: 53  KSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112

Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRL--LKSSQDTVELARRIEKTGVSALAVHGRK 180
           ALL  P+L+  ILT +   +DVPVT KIR       ++ VE+A+  E  G+ AL +HGR 
Sbjct: 113 ALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT 172

Query: 181 VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS 240
            A      A++  I  +   +SIPVIANGD+ +    + +    GA ++M  R A     
Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232

Query: 241 IF 242
           IF
Sbjct: 233 IF 234

Length = 321

>gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional

 Score = 93.3 bits (232), Expect = 9e-22
 Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 13/182 (7%)

Query: 90  ALTAAKMVCKDVAAIDINMGCP-KSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPV 146
           A  AA+ V      +D+N GCP K+ + SGG GA LL  PELI+     ++  +   +PV
Sbjct: 78  AENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPV 136

Query: 147 TCKIRL-LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAALSIP 204
           T K+RL   S +   E+A  +++ G + L VHGR   D  R     W  I +I   L+IP
Sbjct: 137 TVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIP 196

Query: 205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALW--NAS--IFSSQGKLHWEDVKR---EY 257
           VIANG+++++   Q+     G  +VM  RGAL   N S  +  ++ ++ W +V     +Y
Sbjct: 197 VIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKY 256

Query: 258 VR 259
            R
Sbjct: 257 TR 258

Length = 312

>gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A

 Score = 61.8 bits (150), Expect = 8e-11
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 74  ERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIH 132
           E + V  Q+G SD       AK+  K     I++N+GCP     +G  GA L+   +L+ 
Sbjct: 53  EESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVA 112

Query: 133 DILTMLKRNLDVPVTCKIRL----LKSSQDTVELARRIEKTGVSALAVHGRK 180
           D +  ++  +++PVT K R+    L S +   +    +   G     VH RK
Sbjct: 113 DCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARK 164

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318

>gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 17/114 (14%)

Query: 78  VVFQMGTSDAVRALTAAKMVCKDVAA------IDINMGCPKSFSVSGGM-GAALLSKPEL 130
           V  Q+G SD      AAK+     A       I++N+GCP S  V  G  GA L+++PEL
Sbjct: 67  VALQLGGSDPADLAEAAKL-----AEDWGYDEINLNVGCP-SDRVQNGRFGACLMAEPEL 120

Query: 131 IHDILTMLKRNLDVPVTCKIRL----LKSSQDTVELARRIEKTGVSALAVHGRK 180
           + D +  +K  + +PVT K R+      S +   +    + + G     VH RK
Sbjct: 121 VADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARK 174

Length = 333

>gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 52/147 (35%), Positives = 69/147 (46%), Gaps = 9/147 (6%)

Query: 90  ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK 149
            L AA +V K+ A ++IN  C +   V  G G ALL  PE + + +  LK    VPV+ K
Sbjct: 87  LLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVK 145

Query: 150 IRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG 209
           IR      D  ELAR IEK G   + V     A  P + A   +I DI   L I  I N 
Sbjct: 146 IR-AGVDVDDEELARLIEKAGADIIHVD----AMDPGNHADLKKIRDISTELFI--IGNN 198

Query: 210 DVFEYDDFQRIKTAAGASSVMAARGAL 236
            V   +  + +  + GA  V  AR +L
Sbjct: 199 SVTTIESAKEM-FSYGADMVSVARASL 224

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. Length = 233

>gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 28/160 (17%)

Query: 101 VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV 160
             A+++N+ CP     + G G  L   PE + ++L  +K  +D+P+  K+      +D V
Sbjct: 125 AKALELNLSCP-----NVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIV 179

Query: 161 ELARRIEKTGVSALAVHGR---KVADRPRDPAKWGEIA-------------DIVAALS-- 202
           ELA+  E+ G   L        +V D                           VA L+  
Sbjct: 180 ELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR 239

Query: 203 ----IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN 238
               IP+I  G +   +D       AGAS+V  A   +W+
Sbjct: 240 LQLDIPIIGVGGIDSGEDVLE-MLMAGASAVQVATALMWD 278

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 289

>gnl|CDD|129819 TIGR00736, nifR3_rel_arch, TIM-barrel protein, putative

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 8/166 (4%)

Query: 73  QERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH 132
           + R  V   +   D   A      + +    I+IN  C +      G+G  LL   EL+ 
Sbjct: 65  ESRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLK 124

Query: 133 DILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWG 192
           + LT +K  L+ P+  KIR      D +  A  +   G   + V     A  P  P    
Sbjct: 125 EFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD----AMYPGKPYADM 179

Query: 193 EIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL 236
           ++  I++       +I N  + + +  + +   AGA  V  AR  L
Sbjct: 180 DLLKILSEEFNDKIIIGNNSIDDIESAKEM-LKAGADFVSVARAIL 224

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins [Unknown function, General]. Length = 231

>gnl|CDD|240091 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 33/163 (20%)

Query: 90  ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK 149
              A K+      AI++N+ CP   +V GG G A  + PE + +I+  +K+  DVPV  K
Sbjct: 105 VEVAEKLADAGADAIELNISCP---NVKGG-GMAFGTDPEAVAEIVKAVKKATDVPVIVK 160

Query: 150 IRLLKSSQDTVELARRIEKTGVSAL----AVHGRKVADRPRDPA---KWG---------- 192
             L  +  D VE+AR  E+ G   L     + G  +    R P      G          
Sbjct: 161 --LTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPI 218

Query: 193 ---EIADIVAALSIPVIANGDVFEYDD---FQRIKTAAGASSV 229
               +  +  A+ IP+I  G +   +D   F      AGAS+V
Sbjct: 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEF----LMAGASAV 257

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. Length = 296

>gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 157 QDTVELARRIEKTGVSALAV----HGRKVADRPRDPAKWGEIADIVA----ALSIPVIAN 208
           ++ +E+A+ +E+ GV AL V    +       P      G   ++      A+ IPVIA 
Sbjct: 228 EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV 287

Query: 209 GDVFEYDDFQRIKTAAGASSVMAARGAL 236
           G + + +  + I     A  V   R  L
Sbjct: 288 GGIRDPEVAEEILAEGKADLVALGRALL 315

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 327

>gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 27/164 (16%)

Query: 99  KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD 158
             V A ++N+ CP    V GG G A+   PEL  D++  +K   DVPV  K  L  +  D
Sbjct: 117 PYVDAYELNLSCP---HVKGG-GIAIGQDPELSADVVKAVKDKTDVPVFAK--LSPNVTD 170

Query: 159 TVELARRIEKTGVSAL----AVHGRKV---ADRPRDPAKWGEIA-------------DIV 198
             E+A+  E+ G   L     + G K+     +P    K G ++             D+ 
Sbjct: 171 ITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVY 230

Query: 199 AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
             + IP+I  G +  ++D       AGAS+V       +    F
Sbjct: 231 KMVDIPIIGVGGITSFEDALEF-LMAGASAVQVGTAVYYRGFAF 273

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300

>gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 33/157 (21%)

Query: 98  CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ 157
             D  AI++N+ CP   +  GG   AL   PEL+  +L  +K    VPV  K+    +  
Sbjct: 121 AGDADAIELNISCP---NTPGGR--ALGQDPELLEKLLEAVKAATKVPVFVKLA--PNIT 173

Query: 158 DTVELARRIEKTGVSAL-AVHGRKVADRPRDPAKWGEIADIVAALS-------------- 202
           D  E+A+  E+ G   L A++  K   +     K   +A+    LS              
Sbjct: 174 DIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAE 233

Query: 203 --------IPVIANGDVFEYDD-FQRIKTAAGASSVM 230
                   IP+I  G +   +D  + I   AGAS+V 
Sbjct: 234 LYKRLGGDIPIIGVGGIETGEDALEFI--LAGASAVQ 268

Length = 310

>gnl|CDD|235982 PRK07259, PRK07259, dihydroorotate dehydrogenase 1B; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 101 VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV 160
           V AI++N+ CP   +V  G G A  + PEL ++++  +K  + VPV  K  L  +  D V
Sbjct: 119 VDAIELNISCP---NVKHG-GMAFGTDPELAYEVVKAVKEVVKVPVIVK--LTPNVTDIV 172

Query: 161 ELARRIEKTGVSAL 174
           E+A+  E+ G   L
Sbjct: 173 EIAKAAEEAGADGL 186

Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	100.0
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	100.0
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	100.0
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	100.0
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	100.0
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	100.0
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	100.0
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	100.0
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	100.0
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	100.0
KOG2333	614	consensus Uncharacterized conserved protein [Gener	100.0
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	100.0
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	100.0
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	100.0
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	100.0
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	100.0
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	100.0
PRK13523	337	NADPH dehydrogenase NamA; Provisional	100.0
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	100.0
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	100.0
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	99.97
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	99.97
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	99.97
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	99.97
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	99.97
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	99.97
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	99.97
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	99.97
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	99.97
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	99.97
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	99.96
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	99.96
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	99.96
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.96
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	99.96
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	99.95
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	99.94
PRK10605	362	N-ethylmaleimide reductase; Provisional	99.94
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	99.94
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.93
PLN02411	391	12-oxophytodienoate reductase	99.92
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	99.91
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	99.91
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	99.91
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	99.9
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	99.89
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	99.87
PLN02826	409	dihydroorotate dehydrogenase	99.86
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	99.81
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	99.81
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	99.8
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	99.79
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	99.78
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	99.77
PRK14024	241	phosphoribosyl isomerase A; Provisional	99.76
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	99.72
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.72
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	99.7
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	99.65
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	99.65
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.63
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	99.62
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	99.61
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	99.61
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.6
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	99.6
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	99.59
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.56
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	99.55
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	99.53
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	99.51
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	99.5
KOG1436	398	consensus Dihydroorotate dehydrogenase [Nucleotide	99.47
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	99.47
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	99.46
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	99.46
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	99.45
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	99.45
PLN02535	364	glycolate oxidase	99.44
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	99.44
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	99.43
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	99.4
PLN02979	366	glycolate oxidase	99.39
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	99.38
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	99.34
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	99.33
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	99.31
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	99.31
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	99.29
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	99.28
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	99.27
KOG0134	400	consensus NADH:flavin oxidoreductase/12-oxophytodi	99.25
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	99.24
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	99.22
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	99.21
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.18
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.17
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.17
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	99.16
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	99.15
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	99.13
PRK00208	250	thiG thiazole synthase; Reviewed	99.1
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.09
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	99.09
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.08
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	99.08
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	99.08
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.08
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.06
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	99.05
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	99.05
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.04
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	99.04
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.03
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	98.99
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	98.97
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	98.94
KOG0538	363	consensus Glycolate oxidase [Energy production and	98.92
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	98.92
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	98.9
PLN02617	538	imidazole glycerol phosphate synthase hisHF	98.9
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	98.88
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	98.86
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	98.85
PRK14024	241	phosphoribosyl isomerase A; Provisional	98.81
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.81
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.8
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.8
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	98.78
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.76
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	98.76
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	98.73
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	98.72
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	98.72
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.7
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	98.7
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	98.7
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.69
KOG1799	471	consensus Dihydropyrimidine dehydrogenase [Nucleot	98.69
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.68
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.65
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	98.65
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	98.65
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	98.65
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	98.65
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	98.64
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	98.63
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	98.63
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	98.63
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	98.59
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	98.58
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.57
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	98.57
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	98.57
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	98.57
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	98.57
PLN02591	250	tryptophan synthase	98.57
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.56
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.56
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.53
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.52
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	98.52
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.51
PRK07695	201	transcriptional regulator TenI; Provisional	98.49
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	98.48
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	98.48
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	98.46
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	98.45
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	98.44
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.43
PLN02617	538	imidazole glycerol phosphate synthase hisHF	98.43
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	98.42
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	98.42
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	98.41
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	98.4
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	98.36
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	98.34
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	98.34
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	98.32
PLN02334	229	ribulose-phosphate 3-epimerase	98.3
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	98.3
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	98.28
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	98.26
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	98.25
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	98.24
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	98.21
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	98.19
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	98.19
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	98.19
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	98.18
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	98.18
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	98.15
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	98.15
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	98.15
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	98.09
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	98.08
PRK06806	281	fructose-bisphosphate aldolase; Provisional	98.07
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	98.07
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	98.05
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	98.04
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	98.02
PRK06801	286	hypothetical protein; Provisional	98.01
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	98.01
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	98.0
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	97.99
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	97.97
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	97.95
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	97.95
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	97.95
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	97.95
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	97.94
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	97.92
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	97.89
PRK07315	293	fructose-bisphosphate aldolase; Provisional	97.88
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.83
cd03329	368	MR_like_4 Mandelate racemase (MR)-like subfamily o	97.83
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.83
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	97.82
cd03321	355	mandelate_racemase Mandelate racemase (MR) catalyz	97.8
PRK04302	223	triosephosphate isomerase; Provisional	97.78
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.78
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	97.77
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	97.77
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	97.71
PRK08185	283	hypothetical protein; Provisional	97.7
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	97.68
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	97.68
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	97.66
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	97.66
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	97.65
PRK07709	285	fructose-bisphosphate aldolase; Provisional	97.63
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	97.62
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	97.59
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	97.59
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	97.58
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	97.58
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	97.56
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	97.56
PRK08005	210	epimerase; Validated	97.55
PRK06852	304	aldolase; Validated	97.55
cd03325	352	D-galactonate_dehydratase D-galactonate dehydratas	97.54
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	97.53
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	97.53
cd03328	352	MR_like_3 Mandelate racemase (MR)-like subfamily o	97.52
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	97.5
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	97.49
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	97.48
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	97.47
cd03324	415	rTSbeta_L-fuconate_dehydratase Human rTS beta is e	97.47
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	97.46
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	97.45
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	97.44
COG4948	372	L-alanine-DL-glutamate epimerase and related enzym	97.42
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	97.41
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	97.41
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	97.41
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	97.41
PRK14017	382	galactonate dehydratase; Provisional	97.41
cd03326	385	MR_like_1 Mandelate racemase (MR)-like subfamily o	97.4
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	97.38
PRK05835	307	fructose-bisphosphate aldolase; Provisional	97.38
PLN02424	332	ketopantoate hydroxymethyltransferase	97.36
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.36
cd03327	341	MR_like_2 Mandelate racemase (MR)-like subfamily o	97.35
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	97.33
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	97.33
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	97.32
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	97.32
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	97.31
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	97.3
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	97.29
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	97.28
cd03322	361	rpsA The starvation sensing protein RpsA from E.co	97.27
PRK08999	312	hypothetical protein; Provisional	97.26
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	97.22
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.22
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	97.21
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	97.2
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	97.2
TIGR02534	368	mucon_cyclo muconate and chloromuconate cycloisome	97.19
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	97.19
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	97.18
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	97.17
PRK09250	348	fructose-bisphosphate aldolase; Provisional	97.16
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	97.16
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	97.16
PRK07084	321	fructose-bisphosphate aldolase; Provisional	97.15
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	97.14
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	97.14
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	97.14
COG1411	229	Uncharacterized protein related to proFAR isomeras	97.12
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	97.12
cd03318	365	MLE Muconate Lactonizing Enzyme (MLE), an homoocta	97.12
cd03320	263	OSBS o-Succinylbenzoate synthase (OSBS) catalyzes	97.11
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.11
PRK08227	264	autoinducer 2 aldolase; Validated	97.1
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	97.09
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	97.09
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	97.09
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	97.08
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	97.07
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.07
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	97.06
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.06
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.04
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	97.02
PRK15072	404	bifunctional D-altronate/D-mannonate dehydratase;	96.99
PLN02460	338	indole-3-glycerol-phosphate synthase	96.99
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	96.98
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	96.96
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	96.95
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	96.94
PLN02535	364	glycolate oxidase	96.93
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	96.9
PLN02979	366	glycolate oxidase	96.89
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	96.89
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	96.88
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	96.85
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	96.85
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	96.83
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	96.83
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	96.82
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	96.82
cd03323	395	D-glucarate_dehydratase D-Glucarate dehydratase (G	96.82
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	96.81
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	96.81
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	96.8
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	96.8
PF09370	268	TIM-br_sig_trns: TIM-barrel signal transduction pr	96.8
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	96.79
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	96.78
TIGR01928	324	menC_lowGC/arch o-succinylbenzoic acid (OSB) synth	96.77
PRK02714	320	O-succinylbenzoate synthase; Provisional	96.77
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	96.74
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	96.74
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	96.74
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	96.72
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	96.72
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.72
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	96.71
cd03317	354	NAAAR N-acylamino acid racemase (NAAAR), an octame	96.7
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	96.7
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	96.69
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	96.67
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	96.66
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	96.63
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	96.62
TIGR01927	307	menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe	96.61
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	96.61
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	96.57
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.56
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	96.56
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	96.55
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	96.54
PRK14057	254	epimerase; Provisional	96.54
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	96.51
PRK03170	292	dihydrodipicolinate synthase; Provisional	96.51
TIGR03247	441	glucar-dehydr glucarate dehydratase. Glucarate deh	96.5
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	96.5
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	96.49
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	96.47
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.47
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.45
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	96.45
PRK02901	327	O-succinylbenzoate synthase; Provisional	96.43
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	96.42
COG4981	717	Enoyl reductase domain of yeast-type FAS1 [Lipid m	96.4
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	96.36
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	96.35
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	96.33
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	96.32
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	96.25
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	96.24
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.21
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	96.21
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	96.15
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	96.15
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.12
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	96.11
cd00953	279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	96.1
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	96.05
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	95.98
cd00308	229	enolase_like Enolase-superfamily, characterized by	95.97
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	95.97
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	95.96
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	95.96
PRK04147	293	N-acetylneuraminate lyase; Provisional	95.95
PLN02363	256	phosphoribosylanthranilate isomerase	95.95
PRK02227	238	hypothetical protein; Provisional	95.94
PRK15440	394	L-rhamnonate dehydratase; Provisional	95.94
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	95.94
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	95.93
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	95.93
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	95.91
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	95.88
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	95.88
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	95.81
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.79
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.79
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	95.77
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.77
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	95.77
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	95.72
PLN02417	280	dihydrodipicolinate synthase	95.68
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	95.67
PF01680	208	SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p	95.59
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	95.56
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	95.55
TIGR00284	499	dihydropteroate synthase-related protein. This pro	95.51
TIGR03326	412	rubisco_III ribulose bisphosphate carboxylase, typ	95.48
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	95.48
PRK05105	322	O-succinylbenzoate synthase; Provisional	95.45
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	95.44
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	95.42
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	95.42
PRK09197	350	fructose-bisphosphate aldolase; Provisional	95.39
KOG4201	289	consensus Anthranilate synthase component II [Amin	95.38
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	95.38
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	95.35
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	95.28
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	95.27
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	95.26
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	95.25
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	95.25
cd08209	391	RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent	95.24
PLN02858	1378	fructose-bisphosphate aldolase	95.21
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	95.2
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	95.18
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	95.16
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	95.14
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	95.11
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	95.11
TIGR01502	408	B_methylAsp_ase methylaspartate ammonia-lyase. Thi	95.09
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	95.08
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.07
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.05
TIGR01334	277	modD putative molybdenum utilization protein ModD.	94.99
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	94.99
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	94.97
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	94.92
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	94.92
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	94.88
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	94.87
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	94.82
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	94.8
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	94.78
TIGR03586	327	PseI pseudaminic acid synthase.	94.78
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	94.77
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	94.76
PRK15063	428	isocitrate lyase; Provisional	94.74
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	94.73
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	94.73
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	94.72
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	94.71
PRK11572	248	copper homeostasis protein CutC; Provisional	94.65
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.64
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	94.61
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	94.59
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	94.56
cd00423	258	Pterin_binding Pterin binding enzymes. This family	94.52
cd08213	412	RuBisCO_large_III Ribulose bisphosphate carboxylas	94.46
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	94.45
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	94.41
TIGR03332	407	salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp	94.4
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	94.39
PLN02334	229	ribulose-phosphate 3-epimerase	94.36
PRK09549	407	mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno	94.34
PLN02424	332	ketopantoate hydroxymethyltransferase	94.32
PRK15129	321	L-Ala-D/L-Glu epimerase; Provisional	94.28
COG0413	268	PanB Ketopantoate hydroxymethyltransferase [Coenzy	94.22
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	94.17
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	94.15
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	94.09
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	94.09
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	94.07
COG1891	235	Uncharacterized protein conserved in archaea [Func	94.03
KOG3055	263	consensus Phosphoribosylformimino-5-aminoimidazole	94.02
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	93.97
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	93.93
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	93.92
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	93.85
PLN02417	280	dihydrodipicolinate synthase	93.84
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	93.84
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	93.81
PRK06096	284	molybdenum transport protein ModD; Provisional	93.81
PRK04147	293	N-acetylneuraminate lyase; Provisional	93.79
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	93.77
cd08148	366	RuBisCO_large Ribulose bisphosphate carboxylase la	93.77
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	93.77
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	93.72
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	93.72
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	93.7
PRK15452	443	putative protease; Provisional	93.62
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	93.52
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	93.51
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	93.48
cd08206	414	RuBisCO_large_I_II_III Ribulose bisphosphate carbo	93.45
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	93.42
cd00453	340	FTBP_aldolase_II Fructose/tagarose-bisphosphate al	93.4
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	93.39

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.6e-63  Score=460.26  Aligned_cols=288  Identities=36%  Similarity=0.558  Sum_probs=243.6

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++++++||||+|+||.+||.+++++|+ +++||||++++.+.+..+....               .+... +...|+++
T Consensus         8 ~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~---------------~~~~~-~~e~p~~v   71 (323)
T COG0042           8 ELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLL---------------LLDEL-EEERPVAV   71 (323)
T ss_pred             cccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhh---------------hcCcC-CCCCCEEE
Confidence            5689999999999999999999999999 9999999999999875443211               11111 33458999


Q ss_pred             EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCCChHH
Q 020428           81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQD  158 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~  158 (326)
                      ||+|++|+.+++||+.+.+ |+|+||||||||++++++.++|++||++|+++.++|++++++++ +|||||+|+||+..+
T Consensus        72 Ql~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~  151 (323)
T COG0042          72 QLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDD  151 (323)
T ss_pred             EecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCccc
Confidence            9999999999999999987 89999999999999999999999999999999999999999995 999999999998765


Q ss_pred             --HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          159 --TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       159 --~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                        ..++++.++++|+++|+|||||+.++|.+++||+.|+++++.++ +|||+||||.|++|+.++++.+||||||+|||+
T Consensus       152 ~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga  231 (323)
T COG0042         152 ILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA  231 (323)
T ss_pred             ccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence              88999999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             hcCcccccc-----cCC---CCHHH---HHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCchh----HHHhccCCHH
Q 020428          236 LWNASIFSS-----QGK---LHWED---VKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEG----KAIIKSETLA  300 (326)
Q Consensus       236 l~~P~lf~~-----~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  300 (326)
                      +.|||+|++     .+.   .++.+   .+.+|++.+.++.. ..+.. .+++++.++. .++|+.    ..++++.+..
T Consensus       232 ~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~-~~r~h~~~~~-~~~~~a~~~r~~~~~~~~~~  308 (323)
T COG0042         232 LGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYG-KKGLR-RLRKHLGYYL-KGLPGARELRRALNKAEDGA  308 (323)
T ss_pred             ccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcc-ccHHH-HHHHHHHHHh-hcCccHHHHHHHHhccCcHH
Confidence            999999985     233   34443   45567777777665 33333 3333333332 256663    4688999999


Q ss_pred             HHHHHHHh
Q 020428          301 DIAKLYEE  308 (326)
Q Consensus       301 ~~~~~~~~  308 (326)
                      ++.++|+.
T Consensus       309 ~~~~~l~~  316 (323)
T COG0042         309 EVRRALEA  316 (323)
T ss_pred             HHHHHHHH
Confidence            98777764

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=100.00  E-value=2e-61  Score=449.75  Aligned_cols=288  Identities=26%  Similarity=0.351  Sum_probs=235.9

Q ss_pred             ceEEccccCCCCHHHHHHHHHcC-CCeEEeCceecccccccccccccccCcccccccCCcceeee--cccCCCCcEEEEE
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYG-ADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFR--TCHQERNHVVFQM   82 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G-~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~vQl   82 (326)
                      |++||||+|+||.+||.+|+++| ++++||||++++.+....+...       .+.+     .+.  ...+++.|+++||
T Consensus         2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~e~p~~vQl   69 (312)
T PRK10550          2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFH-------RLCP-----ELHNASRTPSGTLVRIQL   69 (312)
T ss_pred             CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHH-------HHhH-----HhcccCCCCCCCcEEEEe
Confidence            68999999999999999999999 8999999999987765322110       0000     000  0123346999999


Q ss_pred             CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCCh-HH
Q 020428           83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSS-QD  158 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~-~~  158 (326)
                      +|++|+.++++|+++.+ |+|+||||||||++++.+.|+|++|+++|+++.+|++++++++  ++||+||+|+|++. ++
T Consensus        70 ~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~  149 (312)
T PRK10550         70 LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGER  149 (312)
T ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchH
Confidence            99999999999999987 9999999999999999999999999999999999999999988  49999999999763 55


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.++++.++++|+|+|+||+|+..+.|++++ +|+.++++++.+++|||+||||.|++|+.++++.+|||+||||||++.
T Consensus       150 ~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~  229 (312)
T PRK10550        150 KFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN  229 (312)
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence            8999999999999999999999999999875 999999999999999999999999999999998899999999999999


Q ss_pred             CcccccccC----CCCHHHH---HHHHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCchh----HHHhccCCHHHHHH
Q 020428          238 NASIFSSQG----KLHWEDV---KREYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPEG----KAIIKSETLADIAK  304 (326)
Q Consensus       238 ~P~lf~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~  304 (326)
                      |||||++..    ..++++.   +.+|++...++..    ....+.+|++++.+|  ++|+.    +++++++|++|+.+
T Consensus       230 nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~----~~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~~~~~e~~~  305 (312)
T PRK10550        230 IPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDT----GLYHVARIKQWLGYLRKEYDEATELFQEIRALNNSPDIAR  305 (312)
T ss_pred             CcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCc----chhHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHHHHHH
Confidence            999999732    2345544   3445543333322    223444444444433  67763    67999999999999


Q ss_pred             HHHhh
Q 020428          305 LYEEE  309 (326)
Q Consensus       305 ~~~~~  309 (326)
                      ++++-
T Consensus       306 ~~~~~  310 (312)
T PRK10550        306 AIQAI  310 (312)
T ss_pred             HHHhh
Confidence            88753

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=100.00  E-value=9.2e-61  Score=448.06  Aligned_cols=288  Identities=29%  Similarity=0.354  Sum_probs=241.4

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +++++|+++|||+|+||.+||.+|+++|++++||||++++.+.......              .. ... ..++..|+++
T Consensus         6 ~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~--------------~~-~~~-~~~~~~~~~v   69 (321)
T PRK10415          6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--------------RL-RMV-HIDEPGIRTV   69 (321)
T ss_pred             ccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhH--------------HH-Hhc-cCccCCCEEE
Confidence            3578899999999999999999999999999999999998764422111              00 011 1233358999


Q ss_pred             EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh--H
Q 020428           81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS--Q  157 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~--~  157 (326)
                      ||+|++|++++++|+.+.+ |+|+||||||||++++.+.++|++|+++|+++.++++++++++++||++|+|.||+.  .
T Consensus        70 Ql~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~  149 (321)
T PRK10415         70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHR  149 (321)
T ss_pred             EEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcc
Confidence            9999999999999998876 899999999999999999999999999999999999999999999999999999865  3


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++++.++++|+|+|+||+|++.+.++++++|+.++++++.+++|||+||||.|++|+.++++.+|||+||+|||++.
T Consensus       150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~  229 (321)
T PRK10415        150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG  229 (321)
T ss_pred             hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence            68899999999999999999999999999999999999999999999999999999999999998799999999999999


Q ss_pred             Cccccccc------C----CCCHHHH---HHHHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCch----hHHHhccCC
Q 020428          238 NASIFSSQ------G----KLHWEDV---KREYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPE----GKAIIKSET  298 (326)
Q Consensus       238 ~P~lf~~~------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~  298 (326)
                      |||+|++.      +    ..++++.   +.+|++.+.++.++    +..++.|++|+.+|  ++|+    +.++++++|
T Consensus       230 nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~  305 (321)
T PRK10415        230 RPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP----AKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED  305 (321)
T ss_pred             CChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHcCCC
Confidence            99999873      2    2235443   34555555555443    34555555555544  5665    357899999


Q ss_pred             HHHHHHHHHh
Q 020428          299 LADIAKLYEE  308 (326)
Q Consensus       299 ~~~~~~~~~~  308 (326)
                      ++|+.+++++
T Consensus       306 ~~~~~~~~~~  315 (321)
T PRK10415        306 ASEQLEALEA  315 (321)
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=100.00  E-value=5.8e-62  Score=454.20  Aligned_cols=288  Identities=35%  Similarity=0.595  Sum_probs=207.9

Q ss_pred             EEccccCCCCHHHHHHHHHcCCC-eEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCC
Q 020428            8 VLAPMVRVGTLPFRLLAAQYGAD-ITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSD   86 (326)
Q Consensus         8 ilAPM~g~t~~~fr~~~~~~G~~-l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~   86 (326)
                      +||||+|+||.+||.+|+++|++ ++||||++++.+.+..+....               .+...+++ .|+++||+|+|
T Consensus         1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~---------------~~~~~~~~-~p~~~Ql~g~~   64 (309)
T PF01207_consen    1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIR---------------LLPFLPNE-RPLIVQLFGND   64 (309)
T ss_dssp             -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHH---------------HS-GCC-T--TEEEEEE-S-
T ss_pred             CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceee---------------cccccccc-cceeEEEeecc
Confidence            68999999999999999999996 999999999998765432211               12222333 59999999999


Q ss_pred             HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC--hHHHHHHH
Q 020428           87 AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS--SQDTVELA  163 (326)
Q Consensus        87 ~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~--~~~~~e~a  163 (326)
                      |+.+.++|+++.+ ++|+||||||||+++++++|+|++||++|+.+.++++++++++++|||||+|+|++  .+++.+++
T Consensus        65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~  144 (309)
T PF01207_consen   65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFA  144 (309)
T ss_dssp             HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHH
Confidence            9999999999998 99999999999999999999999999999999999999999999999999999987  67899999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +.++++|+++|+||+||+.|.|.+++||+.++++++.+++|||+||||+|++|+.++++.+||||||||||++.|||+|+
T Consensus       145 ~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~  224 (309)
T PF01207_consen  145 RILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFR  224 (309)
T ss_dssp             HHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHC
T ss_pred             HHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhh
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             cc-----CC---CCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCchh----HHHhccCCHHHHHHHHHhh
Q 020428          244 SQ-----GK---LHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPEG----KAIIKSETLADIAKLYEEE  309 (326)
Q Consensus       244 ~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~  309 (326)
                      +.     +.   .+......+.+..+.++.....+....+..+++++.+|  ++|+.    +.+.++++.+++.+.|+ +
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~~~~~e~~~~l~-~  303 (309)
T PF01207_consen  225 EIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKGFPGARKFRRELNKCKTLEEFLELLE-E  303 (309)
T ss_dssp             HHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH-SHHHHHHHH---
T ss_pred             hhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHccCCcHHHHHHHHHhhCCHHHHhhhhc-c
Confidence            31     11   11111112233333322222222234566777766654  46653    57899999999999887 4


Q ss_pred             hhh
Q 020428          310 KYY  312 (326)
Q Consensus       310 ~~~  312 (326)
                      +|.
T Consensus       304 ~~~  306 (309)
T PF01207_consen  304 AFL  306 (309)
T ss_dssp             ---
T ss_pred             ccc
Confidence            444

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-60  Score=435.39  Aligned_cols=283  Identities=32%  Similarity=0.561  Sum_probs=248.6

Q ss_pred             EEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCH
Q 020428            8 VLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDA   87 (326)
Q Consensus         8 ilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~   87 (326)
                      ++|||+++|+.+||.+||.||++++||||+.++.+.++.+..               +..+.+++++ .|+|||++|+||
T Consensus        22 i~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r---------------~~~~st~~~D-~PLIvQf~~ndp   85 (358)
T KOG2335|consen   22 IVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYR---------------DSELSTSPED-RPLIVQFGGNDP   85 (358)
T ss_pred             ccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccch---------------hhhcccCCCC-CceEEEEcCCCH
Confidence            799999999999999999999999999999999987743321               1124555554 599999999999


Q ss_pred             HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHH
Q 020428           88 VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIE  167 (326)
Q Consensus        88 ~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~  167 (326)
                      +.+.+||+++++.+|+||||||||+..+.+++||+.|+.+|+++.++|+++++.++.||++|||++.|.++++++|++++
T Consensus        86 ~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e  165 (358)
T KOG2335|consen   86 ENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLE  165 (358)
T ss_pred             HHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHH
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcEEEEeecccCCCC--CCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccc--
Q 020428          168 KTGVSALAVHGRKVADRP--RDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF--  242 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~~~~--~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf--  242 (326)
                      ++|++.++|||||+.++.  .+|+||+.|+.|++.+. +|||+||+|.+.+|+.++++.+||||||+|||+|.|||+|  
T Consensus       166 ~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~  245 (358)
T KOG2335|consen  166 DAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT  245 (358)
T ss_pred             hCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc
Confidence            999999999999999886  78999999999999997 9999999999999999999889999999999999999999  


Q ss_pred             cccCCCCHHHHHHHHHHHHHhhccC--cchHHHHHHHHHHHhhcCCCc-hhHHHhccCCHHHHHHHHHh
Q 020428          243 SSQGKLHWEDVKREYVRKSIFWENN--VKSTKHTLKEMIMHYSSLELP-EGKAIIKSETLADIAKLYEE  308 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  308 (326)
                      ...+..+|+ ...+|++.+.++.+.  +...+.|+..|+..+.. .++ .+..+....+...+.+++.+
T Consensus       246 ~~~~~~~~~-~~~~~l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~-~~~~~r~~~~~~~~~~~~~~~l~~  312 (358)
T KOG2335|consen  246 AGYGPTPWG-CVEEYLDIAREFGGLSSFSLIRHHLFKMLRPLLS-IHQDLRRDLAALNSCESVIDFLEE  312 (358)
T ss_pred             CCCCCCHHH-HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHh-hhHHHHHHHhhccchhhHHHHHHH
Confidence            555556554 556999999998754  67777888888776653 233 25567777777777777663

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=100.00  E-value=6.6e-58  Score=426.83  Aligned_cols=264  Identities=19%  Similarity=0.348  Sum_probs=215.2

Q ss_pred             CceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEEC
Q 020428            5 NKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMG   83 (326)
Q Consensus         5 ~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~   83 (326)
                      +|+++|||+|+||.+||.+|+++|+ +++||||++++.+.+..+.                . .+...++ +.|+++||+
T Consensus         1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~----------------~-~l~~~~~-e~p~~vQl~   62 (318)
T TIGR00742         1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK----------------D-ILKFSPE-ESPVALQLG   62 (318)
T ss_pred             CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH----------------H-HcccCCC-CCcEEEEEc
Confidence            5899999999999999999999998 9999999999998753221                0 2233333 459999999


Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh----HH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS----QD  158 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~----~~  158 (326)
                      |++|+.++++|+.+.+ |+|+||||||||+++++++++|++|+++|+++.++++++++++++||+||+|+|++.    ++
T Consensus        63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~  142 (318)
T TIGR00742        63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEF  142 (318)
T ss_pred             cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHH
Confidence            9999999999999987 899999999999999999999999999999999999999999999999999998753    56


Q ss_pred             HHHHHHHHHHcCCcEEEEeeccc-CCCCCC-------cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          159 TVELARRIEKTGVSALAVHGRKV-ADRPRD-------PAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~-~~~~~~-------~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +.++++.++++|+++|+||+||+ .++|++       +++|+.+.++++.+ ++|||+||||+|++|+.++++  |||+|
T Consensus       143 ~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgV  220 (318)
T TIGR00742       143 LCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGV  220 (318)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEE
Confidence            78999999999999999999997 555554       45899999999987 899999999999999999993  89999


Q ss_pred             EeccchhcCcccccccC---------CCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCchh
Q 020428          230 MAARGALWNASIFSSQG---------KLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEG  290 (326)
Q Consensus       230 miGr~~l~~P~lf~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (326)
                      |||||++.|||+|++..         ..++.+.+..|+++...+.....+.....+++.+|+.  ++|+.
T Consensus       221 MigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~--g~~~~  288 (318)
T TIGR00742       221 MVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLFQ--GKPGA  288 (318)
T ss_pred             EECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHc--cCCCH
Confidence            99999999999999731         1234455444444443332222333333333343332  57764

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=100.00  E-value=1e-55  Score=414.86  Aligned_cols=289  Identities=30%  Similarity=0.479  Sum_probs=241.0

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +.+++|+++|||+|+||.+||.+|+++|++++||||++++.+.+..+...              . ++... .++.|+++
T Consensus         4 ~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~--------------~-~~~~~-~~~~p~i~   67 (319)
T TIGR00737         4 IQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTM--------------R-LLDIA-EDETPISV   67 (319)
T ss_pred             ccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHH--------------H-HhhcC-CccceEEE
Confidence            46789999999999999999999999999999999999998865332111              0 12222 33469999


Q ss_pred             EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh--H
Q 020428           81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS--Q  157 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~--~  157 (326)
                      ||+|++|+++.++|+++++ |+|+||||+|||++++++.++|+.++++|+++.++++++++.+++||+||+|.|++.  .
T Consensus        68 ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~  147 (319)
T TIGR00737        68 QLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI  147 (319)
T ss_pred             EEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc
Confidence            9999999999999999987 999999999999888888888999999999999999999999999999999998753  3


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++++.++++|+|+|+||+|+..+.++++++|+.++++++.+++|||+||||.|++|+.++++.+|||+||+|||++.
T Consensus       148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~  227 (319)
T TIGR00737       148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG  227 (319)
T ss_pred             hHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence            57899999999999999999999998898999999999999999999999999999999999998899999999999999


Q ss_pred             Cccccccc------CC----CCHHH---HHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCch----hHHHhccCCHH
Q 020428          238 NASIFSSQ------GK----LHWED---VKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPE----GKAIIKSETLA  300 (326)
Q Consensus       238 ~P~lf~~~------~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  300 (326)
                      |||+|++.      +.    .++.+   .+.+|++.+.++.++..... .+++++.+|. .++|+    ++++++++|++
T Consensus       228 ~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~-~~~~~~~~~r~~~~~~~~~~  305 (319)
T TIGR00737       228 NPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLR-IARKHIAWYL-KGFPGNAALRQTLNHASSFQ  305 (319)
T ss_pred             CChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHH-HHHHHHHHHH-hcCCcHHHHHHHHHcCCCHH
Confidence            99999863      21    22333   45566766666554433233 3444444443 25665    36899999999


Q ss_pred             HHHHHHH
Q 020428          301 DIAKLYE  307 (326)
Q Consensus       301 ~~~~~~~  307 (326)
                      ++.++++
T Consensus       306 ~~~~~~~  312 (319)
T TIGR00737       306 EVKQLLD  312 (319)
T ss_pred             HHHHHHH
Confidence            9999987

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=100.00  E-value=2.4e-53  Score=399.84  Aligned_cols=241  Identities=21%  Similarity=0.353  Sum_probs=205.9

Q ss_pred             CCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            3 YQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         3 l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      .+++++||||+|+||.+||.+|+++|+ +++||||++++.+.+...        ..         .+...+ .+.|+++|
T Consensus         9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~--------~~---------~l~~~~-~e~p~~vQ   70 (333)
T PRK11815          9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDR--------ER---------LLAFDP-EEHPVALQ   70 (333)
T ss_pred             CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCH--------HH---------HhccCC-CCCcEEEE
Confidence            467999999999999999999999997 999999999999876321        01         122223 34599999


Q ss_pred             ECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC----h
Q 020428           82 MGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS----S  156 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~----~  156 (326)
                      |+|++|+.++++|+++++ |+|+||||+|||+++++++++|++|+++|+++.++++++++++++||++|+|++++    .
T Consensus        71 l~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~  150 (333)
T PRK11815         71 LGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSY  150 (333)
T ss_pred             EeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCH
Confidence            999999999999999988 99999999999999999999999999999999999999999999999999999754    2


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeeccc-CCCCC-------CcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKV-ADRPR-------DPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~-~~~~~-------~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      .++.++++.++++|+|+|+||+|+. .+.++       ++.+|+.++++++.+ ++|||+||||+|++|+.++++  |||
T Consensus       151 ~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aD  228 (333)
T PRK11815        151 EFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVD  228 (333)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCC
Confidence            5678999999999999999999986 34444       468999999999986 899999999999999999995  699


Q ss_pred             EEEeccchhcCccccccc-----CC----CCHHHHHHHHHHHHHh
Q 020428          228 SVMAARGALWNASIFSSQ-----GK----LHWEDVKREYVRKSIF  263 (326)
Q Consensus       228 ~VmiGr~~l~~P~lf~~~-----~~----~~~~~~~~~~~~~~~~  263 (326)
                      +||||||++.|||+|++.     +.    .++.+.+..|+++...
T Consensus       229 gVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (333)
T PRK11815        229 GVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIER  273 (333)
T ss_pred             EEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999973     11    2455655445444443

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=100.00  E-value=1.2e-48  Score=350.82  Aligned_cols=224  Identities=45%  Similarity=0.705  Sum_probs=203.9

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS   85 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~   85 (326)
                      ++++|||+++||.+||.+|+++|++++||||++++.+....+....                +....+.+.|+++||+|+
T Consensus         1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------~~~~~~~~~p~~~qi~g~   64 (231)
T cd02801           1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLR----------------LLTRNPEERPLIVQLGGS   64 (231)
T ss_pred             CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHH----------------hhccCccCCCEEEEEcCC
Confidence            5799999999999999999999999999999999988764432210                111234556999999999


Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH-HHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ-DTVELA  163 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~-~~~e~a  163 (326)
                      ++++|.++|+++.+ |+|+||||+|||++++++++||++++++++++.++++++++.+++||++|+|.+++.. ++.+++
T Consensus        65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~  144 (231)
T cd02801          65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELA  144 (231)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHH
Confidence            99999999999988 9999999999999999999999999999999999999999999999999999998775 899999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +.++++|+|+|++|+|+..+.+.++.+|+.++++++.+++||++||||.|++|+.++++.+|||+||+||+++.||++|+
T Consensus       145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~  224 (231)
T cd02801         145 KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR  224 (231)
T ss_pred             HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHH
Confidence            99999999999999999877677788999999999999999999999999999999997679999999999999999998


Q ss_pred             cc
Q 020428          244 SQ  245 (326)
Q Consensus       244 ~~  245 (326)
                      +.
T Consensus       225 ~~  226 (231)
T cd02801         225 EI  226 (231)
T ss_pred             hh
Confidence            74

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-47  Score=351.64  Aligned_cols=318  Identities=46%  Similarity=0.734  Sum_probs=297.5

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      .+.|++|||||+.+++.|+|.++-+||++++|||-+.+..++...+..|..+++.+|........+|++++.+...+++|
T Consensus         8 ~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlilQ   87 (477)
T KOG2334|consen    8 FYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLILQ   87 (477)
T ss_pred             hhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeEEEE
Confidence            57899999999999999999999999999999999999999999999999999999998776668899999998899999


Q ss_pred             ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHH
Q 020428           82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e  161 (326)
                      ++.++++...++|+.+.++..+||+|||||..+.+..|+|++|+.+|+.+..|+.++.+...+|+++|+|+..+.+++++
T Consensus        88 ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~  167 (477)
T KOG2334|consen   88 IGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLK  167 (477)
T ss_pred             ecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHH
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCC---HHHHHHHHHhcCCcEEEeccchhc
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFE---YDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s---~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.+...|+..|+||+|+.+++...|++-+.++++.+.+. +|||.||++.+   ..|++...+.+|+++||++|++..
T Consensus       168 lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~  247 (477)
T KOG2334|consen  168 LVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES  247 (477)
T ss_pred             HHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence            99999999999999999999999999999999999999887 99999999999   778888888899999999999999


Q ss_pred             CcccccccCCCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcCCCchhHHHhccCCHHHHHHHHHhhhhhHHhhh
Q 020428          238 NASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSETLADIAKLYEEEKYYQFVNE  317 (326)
Q Consensus       238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (326)
                      ||.+|.+.|..++.+..++|++.+.+|...+..+++.+..++.-.. -.+|.++.+..+.+.+++.+.++..+++.+++.
T Consensus       248 n~SiF~~eG~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~-~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~  326 (477)
T KOG2334|consen  248 NPSIFREEGCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQ-EGCPRGKRIQAAQTVAQICKAFEIEDIYATLKR  326 (477)
T ss_pred             CCceeeecCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhh-ccCchhhHhhcchhHHHHHHHhcchhHHHhhHH
Confidence            9999999998889999999999999999999889988888775432 246888999999999999999999999988887


Q ss_pred             ccc
Q 020428          318 NRF  320 (326)
Q Consensus       318 ~~~  320 (326)
                      +++
T Consensus       327 el~  329 (477)
T KOG2334|consen  327 ELD  329 (477)
T ss_pred             hhc
Confidence            743

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=100.00  E-value=4.5e-45  Score=341.28  Aligned_cols=269  Identities=32%  Similarity=0.528  Sum_probs=227.5

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      ++++.+.+|||+..++++|||++|+.+|||+.|+||..+..|+.....++.               +++....++ -++|
T Consensus       261 lD~r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWA---------------LlkRH~sEd-iFGV  324 (614)
T KOG2333|consen  261 LDFRDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWA---------------LLKRHQSED-IFGV  324 (614)
T ss_pred             cccccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhh---------------hhhhcCccc-ceee
Confidence            467899999999999999999999999999999999999998865443322               122233444 6999


Q ss_pred             EECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh-
Q 020428           81 QMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS-  156 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~-  156 (326)
                      ||.|+.|+.+.++|+.+.+  .+|.||||+|||..-+.+.|.|++||++|..+.++|+++...+ .+||+||+|.|... 
T Consensus       325 Qlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg  404 (614)
T KOG2333|consen  325 QLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEG  404 (614)
T ss_pred             EeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccC
Confidence            9999999999999999976  6799999999999999999999999999999999999998887 56999999998543 


Q ss_pred             -HHHHHHHHHHH-HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcC-CcEEEe
Q 020428          157 -QDTVELARRIE-KTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAG-ASSVMA  231 (326)
Q Consensus       157 -~~~~e~a~~l~-~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~G-ad~Vmi  231 (326)
                       --+.+++..+. +.|+++||+|||++.|+|+..+||++|.++.+..  .+|+|+||||.|.+|..+-+..++ +++|||
T Consensus       405 ~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMI  484 (614)
T KOG2333|consen  405 HPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMI  484 (614)
T ss_pred             chhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEe
Confidence             34566777776 9999999999999999999999999999999876  389999999999999888876666 999999


Q ss_pred             ccchhcCcccccccCC-CC-------HHHHHHHHHHHHHh-hccCcch---HHHHHHHHHHHhhcC
Q 020428          232 ARGALWNASIFSSQGK-LH-------WEDVKREYVRKSIF-WENNVKS---TKHTLKEMIMHYSSL  285 (326)
Q Consensus       232 Gr~~l~~P~lf~~~~~-~~-------~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~  285 (326)
                      |||+|..||||.+..+ ..       .-+++++|.+.-++ |+++.+|   +++.+.+|+.++..|
T Consensus       485 aRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RY  550 (614)
T KOG2333|consen  485 ARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRY  550 (614)
T ss_pred             eccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhh
Confidence            9999999999998532 11       34678888888887 5666655   566778888777654

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=100.00  E-value=2.6e-44  Score=322.22  Aligned_cols=220  Identities=27%  Similarity=0.312  Sum_probs=177.7

Q ss_pred             ceEEccccCCCCHHHHH-HHHHcCCCeE------EeCceecccccccccccccccCcccccccCCcce---eeecccCCC
Q 020428            6 KLVLAPMVRVGTLPFRL-LAAQYGADIT------YGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSV---VFRTCHQER   75 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~-~~~~~G~~l~------~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   75 (326)
                      |++||||+|+||.+||. ++..+|++++      .++|..+..+..-.+        .+|+......+   .+....+.+
T Consensus         1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~--------~ef~~~~~~~~~~~~~~~~~~~~   72 (233)
T cd02911           1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGR--------KEFLPDDPLEFIEGEIKALKDSN   72 (233)
T ss_pred             CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCC--------ccccccchHHHHHHHHHHhhccC
Confidence            68999999999999998 6666665544      344444444332111        12221110000   112223335


Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .|+++||+|++++.+.++|+.+.+.+++||||||||++++++.++|++|+++|+.+.++++++++ .++||++|+|++++
T Consensus        73 ~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~  151 (233)
T cd02911          73 VLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD  151 (233)
T ss_pred             CeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC
Confidence            69999999999999999999998777999999999999999999999999999999999999998 59999999999988


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                       .++.++++.++++|+|.||++.+..  .  .+++|+.+++++  +++|||+||||+|++|+.++++ +|||+||+||+ 
T Consensus       152 -~~~~~la~~l~~aG~d~ihv~~~~~--g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~-  222 (233)
T cd02911         152 -VDDEELARLIEKAGADIIHVDAMDP--G--NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVARA-  222 (233)
T ss_pred             -cCHHHHHHHHHHhCCCEEEECcCCC--C--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC-
Confidence             7899999999999999887764422  1  478999999987  7899999999999999999995 89999999999 


Q ss_pred             hcCcccccc
Q 020428          236 LWNASIFSS  244 (326)
Q Consensus       236 l~~P~lf~~  244 (326)
                       .|||+|.+
T Consensus       223 -~~p~~~~~  230 (233)
T cd02911         223 -SLPENIEW  230 (233)
T ss_pred             -CCchHHHH
Confidence             99999986

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=100.00  E-value=3.6e-39  Score=286.45  Aligned_cols=219  Identities=21%  Similarity=0.227  Sum_probs=176.2

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCcee-cccccccccccccccCcccccccC--Cccee---eecccCCCCcEEEEECCC
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEII-DHKLLKCERRVNEYIGSTDFVEKG--TDSVV---FRTCHQERNHVVFQMGTS   85 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~-~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~p~~vQl~g~   85 (326)
                      |+|.||..|..-...+ +|+++-+-.+ ++......+.. ...++.+|+...  +.+++   +.... +..|+++|+.++
T Consensus         1 mag~~d~~~~~~~~~~-~~~~~lgg~~~d~~t~~a~~~~-~~rgr~ef~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~   77 (231)
T TIGR00736         1 MAGITDAEFCRKFKDL-FAIVTLGGYNADRATYKASRDI-EKRGRKEFSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFV   77 (231)
T ss_pred             CCCcchHHHHHhcCcC-cCEEEECCccCCHHHHHHHHHH-HHcCCcccCcCcccHHHHHHHHHHHHh-hcCCEEEEEecC
Confidence            8999999997665443 7777655444 33333333322 122344443221  11111   22233 455999999999


Q ss_pred             CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428           86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus        86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      +++++.++++.+.+++|+||||||||++++++.|+|++|+++|+.+.++++++++ .++||+||+|++++..++.++++.
T Consensus        78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~  156 (231)
T TIGR00736        78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALN  156 (231)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHH
Confidence            9999999999998899999999999999999999999999999999999999994 489999999998877789999999


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ++++|+|+|+||.+....   +.++|+.|+++++.++ +|||+||||+|++|+.++++ +|||+||+||+++.+
T Consensus       157 l~~aGad~i~Vd~~~~g~---~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~~  226 (231)
T TIGR00736       157 LVDDGFDGIHVDAMYPGK---PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVSVARAILKG  226 (231)
T ss_pred             HHHcCCCEEEEeeCCCCC---chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence            999999999999765431   3379999999999985 99999999999999999995 999999999999976

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=100.00  E-value=7.6e-37  Score=284.91  Aligned_cols=236  Identities=22%  Similarity=0.312  Sum_probs=182.7

Q ss_pred             CCCCCceEEcc-ccCCCCHHHHHHHHHcCCCeEEeCceecccccc-ccccc----ccccCcccccccCCc---ceeeecc
Q 020428            1 MDYQNKLVLAP-MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK-CERRV----NEYIGSTDFVEKGTD---SVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAP-M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~----~~~~~~~~~~~~~~~---~~~~~~~   71 (326)
                      ++++||+++|| |.++++..+|.+++. |+|+++|+.+..++-.. ..+..    ....+...+.+....   +.+....
T Consensus         8 ~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~   86 (300)
T TIGR01037         8 IRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVR   86 (300)
T ss_pred             EECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHh
Confidence            46899999999 579999999988876 99999997766553210 00000    000001111110000   1111122


Q ss_pred             cCCCCcEEEEECCCCHHHHHHHHHHhhc---CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           72 HQERNHVVFQMGTSDAVRALTAAKMVCK---DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~---~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      ++.+.|+++||+|++++++.++++.+.+   ++|+||||+|||+.+    ++|+.++.+|+++.++++++++.+++||++
T Consensus        87 ~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~v  162 (300)
T TIGR01037        87 EEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFA  162 (300)
T ss_pred             ccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            3334689999999999999999999984   389999999999974    689999999999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcCCcEEEEeeccc----------------CCCCCCcCCH----HHHHHHHHhcCCcEEEe
Q 020428          149 KIRLLKSSQDTVELARRIEKTGVSALAVHGRKV----------------ADRPRDPAKW----GEIADIVAALSIPVIAN  208 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~----------------~~~~~~~~~~----~~i~~i~~~~~iPVi~n  208 (326)
                      |++.  +.++..++++.++++|+|+|++|+++.                .+.+++++.|    +.+.++++.+++|||+|
T Consensus       163 Ki~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~  240 (300)
T TIGR01037       163 KLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGV  240 (300)
T ss_pred             ECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEE
Confidence            9984  445789999999999999999985432                1234555544    78899999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      |||.|++|+.+++ .+|||+||+||+++.+||+|++
T Consensus       241 GGI~s~~da~~~l-~~GAd~V~igr~~l~~p~~~~~  275 (300)
T TIGR01037       241 GGITSFEDALEFL-MAGASAVQVGTAVYYRGFAFKK  275 (300)
T ss_pred             CCCCCHHHHHHHH-HcCCCceeecHHHhcCchHHHH
Confidence            9999999999999 5899999999999999999987

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=100.00  E-value=1.5e-33  Score=266.57  Aligned_cols=240  Identities=14%  Similarity=0.180  Sum_probs=187.2

Q ss_pred             CCCCCceEEccccC-------CCCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVR-------VGTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g-------~t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      +++|||+++|||..       .|+...+...+..  |+|+++||.+.++......+   .+++.++  +++  ..+.+.+
T Consensus        10 ~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~---~~~~l~~d~~i~--~~~~l~~   84 (343)
T cd04734          10 LTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAF---GNLNASDDEIIP--GFRRLAE   84 (343)
T ss_pred             EEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCC---CccccCCHHHHH--HHHHHHH
Confidence            47899999999962       3445555444444  79999999888765432211   1122221  111  1122456


Q ss_pred             cccCCCCcEEEEECCC-----------------C---------------------HHHHHHHHHHhhc-CCCEEEEcc--
Q 020428           70 TCHQERNHVVFQMGTS-----------------D---------------------AVRALTAAKMVCK-DVAAIDINM--  108 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~-----------------~---------------------~~~~~~aa~~~~~-~~d~idlN~--  108 (326)
                      ..|+.+.++++||+..                 +                     .++|++||+++.+ |||+||||+  
T Consensus        85 ~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ah  164 (343)
T cd04734          85 AVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAH  164 (343)
T ss_pred             HHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence            6788888999999621                 0                     2578999999887 999999999  


Q ss_pred             C-------CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC--------ChHHHHHHHHHHHHcC-Cc
Q 020428          109 G-------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK--------SSQDTVELARRIEKTG-VS  172 (326)
Q Consensus       109 g-------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~--------~~~~~~e~a~~l~~~G-~d  172 (326)
                      |       ||..+.++++||++++++.+++.+|+++++++++.++++|+|+++        +.++++++++.++++| +|
T Consensus       165 GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd  244 (343)
T cd04734         165 GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLID  244 (343)
T ss_pred             chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCC
Confidence            4       788899999999999999999999999999999888888888853        4578999999999998 89


Q ss_pred             EEEEeecccCCC-----------CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          173 ALAVHGRKVADR-----------PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       173 ~i~vh~r~~~~~-----------~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +|+||++.....           +....+|+.++++++.+++||++||||.|+++++++++.++||+||+||+++.||||
T Consensus       245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l  324 (343)
T cd04734         245 YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHL  324 (343)
T ss_pred             EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccH
Confidence            999975533221           122346889999999999999999999999999999987889999999999999999


Q ss_pred             cccc
Q 020428          242 FSSQ  245 (326)
Q Consensus       242 f~~~  245 (326)
                      +++.
T Consensus       325 ~~k~  328 (343)
T cd04734         325 VAKA  328 (343)
T ss_pred             HHHH
Confidence            9874

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=100.00  E-value=7.5e-33  Score=257.58  Aligned_cols=235  Identities=22%  Similarity=0.293  Sum_probs=181.1

Q ss_pred             CCCCCceEEccccCC--CCHHHHHHHHHcCCCeEEeCceeccccccc-cccccc----ccCcccccccCCcc---eeeec
Q 020428            1 MDYQNKLVLAPMVRV--GTLPFRLLAAQYGADITYGEEIIDHKLLKC-ERRVNE----YIGSTDFVEKGTDS---VVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~--t~~~fr~~~~~~G~~l~~te~i~~~~l~~~-~~~~~~----~~~~~~~~~~~~~~---~~~~~   70 (326)
                      ++++||+++|  +|.  ++..+|.++...|+|.+.|++++.+..... .+...+    ..+...+-+.....   .+.+.
T Consensus         7 ~~~~nP~~~a--ag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~   84 (296)
T cd04740           7 LRLKNPVILA--SGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPW   84 (296)
T ss_pred             EEcCCCCEEC--CCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHH
Confidence            4689999998  444  778899998876699999999998764321 111000    00000010100001   01111


Q ss_pred             ccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE
Q 020428           71 CHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK  149 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK  149 (326)
                      .++.+.|+++||+|++++++.++|+++++ |+|+||||++||+.+    +.|..+..+|+++.++++++++.+++||++|
T Consensus        85 ~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK  160 (296)
T cd04740          85 LREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDVPVIVK  160 (296)
T ss_pred             hhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence            12345699999999999999999999987 899999999999874    3488889999999999999999999999999


Q ss_pred             ecCCCChHHHHHHHHHHHHcCCcEEEEeecccC----------------CCCCCcC----CHHHHHHHHHhcCCcEEEeC
Q 020428          150 IRLLKSSQDTVELARRIEKTGVSALAVHGRKVA----------------DRPRDPA----KWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       150 ~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~----------------~~~~~~~----~~~~i~~i~~~~~iPVi~nG  209 (326)
                      ++.  +.++..++++.++++|+|+|++++++..                +.+++++    .++.++++++.+++|||++|
T Consensus       161 l~~--~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~G  238 (296)
T cd04740         161 LTP--NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVG  238 (296)
T ss_pred             eCC--CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEEC
Confidence            975  3447889999999999999998654321                2334443    46889999999999999999


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          210 DVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       210 gI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ||.|++|+.+++ ..|||+||+||+++.||++|++
T Consensus       239 GI~~~~da~~~l-~~GAd~V~igra~l~~p~~~~~  272 (296)
T cd04740         239 GIASGEDALEFL-MAGASAVQVGTANFVDPEAFKE  272 (296)
T ss_pred             CCCCHHHHHHHH-HcCCCEEEEchhhhcChHHHHH
Confidence            999999999999 5999999999999999999987

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=100.00  E-value=1.5e-32  Score=255.68  Aligned_cols=238  Identities=20%  Similarity=0.277  Sum_probs=183.0

Q ss_pred             CCCCCceEEccccCCC-C-HHHHHHHHHcCCCeEEeCceeccc--cccccccccc----ccCcccccccC------Ccce
Q 020428            1 MDYQNKLVLAPMVRVG-T-LPFRLLAAQYGADITYGEEIIDHK--LLKCERRVNE----YIGSTDFVEKG------TDSV   66 (326)
Q Consensus         1 l~l~~~iilAPM~g~t-~-~~fr~~~~~~G~~l~~te~i~~~~--l~~~~~~~~~----~~~~~~~~~~~------~~~~   66 (326)
                      ++++||+++|. ...+ + ..++.+. ..|+|.+.+..+..+.  .....+....    ......|.+..      ....
T Consensus         9 l~l~nPi~~aa-g~~~~~~~~~~~~~-~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~~~~   86 (299)
T cd02940           9 IKFPNPFGLAS-APPTTSYPMIRRAF-EAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPLEYW   86 (299)
T ss_pred             EEcCCCCEeCC-cCCCCCHHHHHHHH-HhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCHHHH
Confidence            46899999997 2233 3 3444544 4499999999888872  2211221111    00111111100      0000


Q ss_pred             ---eeecccC-CCCcEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh
Q 020428           67 ---VFRTCHQ-ERNHVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR  140 (326)
Q Consensus        67 ---~~~~~~~-~~~p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~  140 (326)
                         +.+.... .+.|+++|++|. +++++.++|+.+++ ++|+||||+|||+. ..+++.|++++++|+.+.++++++++
T Consensus        87 ~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~iv~~v~~  165 (299)
T cd02940          87 LKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEICRWVRE  165 (299)
T ss_pred             HHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHHHHHHHH
Confidence               1111111 135899999998 99999999999987 89999999999998 56677899999999999999999999


Q ss_pred             cccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE---------------------EeecccCCCCCCcCC----HHHHH
Q 020428          141 NLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA---------------------VHGRKVADRPRDPAK----WGEIA  195 (326)
Q Consensus       141 ~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~---------------------vh~r~~~~~~~~~~~----~~~i~  195 (326)
                      .+++||+||+|..  ..+..++++.++++|+|+|+                     +|+|+..+.++|+++    |+.+.
T Consensus       166 ~~~~Pv~vKl~~~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~  243 (299)
T cd02940         166 AVKIPVIAKLTPN--ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVS  243 (299)
T ss_pred             hcCCCeEEECCCC--chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHH
Confidence            9999999999964  34788999999999999998                     456777778888887    89999


Q ss_pred             HHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          196 DIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       196 ~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      ++++.+  ++|||+||||.|.+|+.+++ .+|||+||+|||++. +|.++.+
T Consensus       244 ~~~~~~~~~ipIig~GGI~~~~da~~~l-~aGA~~V~i~ta~~~~g~~~~~~  294 (299)
T cd02940         244 QIARAPEPGLPISGIGGIESWEDAAEFL-LLGASVVQVCTAVMNQGFTIVDD  294 (299)
T ss_pred             HHHHhcCCCCcEEEECCCCCHHHHHHHH-HcCCChheEceeecccCCcHHHH
Confidence            999999  89999999999999999999 599999999999988 8998876

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=100.00  E-value=5e-33  Score=261.90  Aligned_cols=238  Identities=16%  Similarity=0.148  Sum_probs=187.8

Q ss_pred             CCCCCceEEccccCC---------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcc--cccccCCccee
Q 020428            1 MDYQNKLVLAPMVRV---------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVV   67 (326)
Q Consensus         1 l~l~~~iilAPM~g~---------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~   67 (326)
                      +++|||+++|||...         |+...+...++.  |+|+++||.+.++......+   ...+.+  ++++  ..+.+
T Consensus        12 ~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~---~~~~~~~d~~i~--~~r~l   86 (337)
T PRK13523         12 VTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISD---KDLGIWDDEHIE--GLHKL   86 (337)
T ss_pred             EeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCC---CceecCCHHHHH--HHHHH
Confidence            468999999999642         222333333333  79999999877654322111   111111  1111  11224


Q ss_pred             eecccCCCCcEEEEECC--C---------------------C------------HHHHHHHHHHhhc-CCCEEEEccC--
Q 020428           68 FRTCHQERNHVVFQMGT--S---------------------D------------AVRALTAAKMVCK-DVAAIDINMG--  109 (326)
Q Consensus        68 ~~~~~~~~~p~~vQl~g--~---------------------~------------~~~~~~aa~~~~~-~~d~idlN~g--  109 (326)
                      .+.+|+.+.++++||+.  .                     .            .++|.++|+++.+ |||+||||+|  
T Consensus        87 ~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahG  166 (337)
T PRK13523         87 VTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHG  166 (337)
T ss_pred             HHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc
Confidence            66778888899999953  1                     0            2578999999987 9999999999  


Q ss_pred             -------CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC------CCChHHHHHHHHHHHHcCCcEEEE
Q 020428          110 -------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL------LKSSQDTVELARRIEKTGVSALAV  176 (326)
Q Consensus       110 -------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~i~v  176 (326)
                             ||..|.+.+.||++|.++.+++.+|+++||++++.||++|++.      |.+.++..++++.+++.|+|+|+|
T Consensus       167 yLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~v  246 (337)
T PRK13523        167 YLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDV  246 (337)
T ss_pred             hHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence                   8999999999999999999999999999999999999999997      457789999999999999999999


Q ss_pred             eecccC----CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          177 HGRKVA----DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       177 h~r~~~----~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      |+++..    +.+. ..++++.+++++.+++||+++|+|.|++++++++++.+||+|++||+++.||+|+++
T Consensus       247 s~g~~~~~~~~~~~-~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k  317 (337)
T PRK13523        247 SSGAVVPARIDVYP-GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRI  317 (337)
T ss_pred             CCCCCCCCCCCCCc-cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHH
Confidence            998632    2222 337889999999999999999999999999999976779999999999999999887

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=100.00  E-value=3.6e-32  Score=257.29  Aligned_cols=242  Identities=14%  Similarity=0.141  Sum_probs=187.6

Q ss_pred             CCCCCceEEccccCC--------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCcceee
Q 020428            1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVF   68 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~   68 (326)
                      ++|||||++|||...        |+.......+++  |+++++||.+.++......+..-...+.++  +++  ..+.+.
T Consensus        11 ~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~--~~~~l~   88 (338)
T cd04733          11 ATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLE--AFREWA   88 (338)
T ss_pred             cEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHH--HHHHHH
Confidence            578999999999632        334444444444  789999998877544221110001111111  111  112245


Q ss_pred             ecccCCCCcEEEEECC--C---------------------------C------------HHHHHHHHHHhhc-CCCEEEE
Q 020428           69 RTCHQERNHVVFQMGT--S---------------------------D------------AVRALTAAKMVCK-DVAAIDI  106 (326)
Q Consensus        69 ~~~~~~~~p~~vQl~g--~---------------------------~------------~~~~~~aa~~~~~-~~d~idl  106 (326)
                      +.+|+.+.++++||+.  .                           .            .++|++||+++++ |||+|||
T Consensus        89 ~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVei  168 (338)
T cd04733          89 AAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQI  168 (338)
T ss_pred             HHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            6677788888999853  0                           0            2578899999987 9999999


Q ss_pred             ccCC---------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEec------CCCChHHHHHHHHHHHHc
Q 020428          107 NMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIR------LLKSSQDTVELARRIEKT  169 (326)
Q Consensus       107 N~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r------~g~~~~~~~e~a~~l~~~  169 (326)
                      |+||         |..|.++++||++|+++++++.+++++||+++  +.||.+|++      .|++.+++.++++.|+++
T Consensus       169 h~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~  248 (338)
T cd04733         169 HAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEA  248 (338)
T ss_pred             chhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHc
Confidence            9996         99999999999999999999999999999998  479999997      368888999999999999


Q ss_pred             CCcEEEEeecccCCCCCC-----------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          170 GVSALAVHGRKVADRPRD-----------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~-----------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      |+|+|+||+++..+....           ...++..++|++.+++||+++|+|.|++++++++++.+||+|++||+++.|
T Consensus       249 Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iad  328 (338)
T cd04733         249 GVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALE  328 (338)
T ss_pred             CCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhC
Confidence            999999999976543311           113677889999999999999999999999999977779999999999999


Q ss_pred             cccccc
Q 020428          239 ASIFSS  244 (326)
Q Consensus       239 P~lf~~  244 (326)
                      |+|+++
T Consensus       329 P~~~~k  334 (338)
T cd04733         329 PDLPNK  334 (338)
T ss_pred             ccHHHH
Confidence            999986

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=100.00  E-value=3.1e-31  Score=247.29  Aligned_cols=236  Identities=19%  Similarity=0.283  Sum_probs=177.8

Q ss_pred             CCCCCceEEcc-ccCCCCHHHHHHHHHcCCCeEEeCceeccccc-cccccccc----ccCcccccccCCcce---eeecc
Q 020428            1 MDYQNKLVLAP-MVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRVNE----YIGSTDFVEKGTDSV---VFRTC   71 (326)
Q Consensus         1 l~l~~~iilAP-M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~   71 (326)
                      ++++||+++|. +.+. +..+...+...|+|.+.+..++.+.-. +..+....    .++...+.+.....+   +.+..
T Consensus         9 ~~~~nPv~~aag~~~~-~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~   87 (301)
T PRK07259          9 LKLKNPVMPASGTFGF-GGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWL   87 (301)
T ss_pred             EECCCCcEECCcCCCC-CHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHH
Confidence            46899999986 4443 345666666789999999988866432 11111100    011111111111111   11111


Q ss_pred             cCCCCcEEEEECCCCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE
Q 020428           72 HQERNHVVFQMGTSDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK  149 (326)
Q Consensus        72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK  149 (326)
                      .+.+.|+++||+|+++++|.++|+++++ | +|+||||++||+..    +.|..+.++++++.++++++++.+++||++|
T Consensus        88 ~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~----~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vK  163 (301)
T PRK07259         88 EEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK----HGGMAFGTDPELAYEVVKAVKEVVKVPVIVK  163 (301)
T ss_pred             hccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            2235699999999999999999999988 7 99999999999852    2277899999999999999999999999999


Q ss_pred             ecCCCChHHHHHHHHHHHHcCCcEEEEeecccC----------------CCCCC----cCCHHHHHHHHHhcCCcEEEeC
Q 020428          150 IRLLKSSQDTVELARRIEKTGVSALAVHGRKVA----------------DRPRD----PAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       150 ~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~----------------~~~~~----~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                      ++.  +.++..++++.++++|+|+|++++++..                +.+++    |..++.++++++.+++|||++|
T Consensus       164 l~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~G  241 (301)
T PRK07259        164 LTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMG  241 (301)
T ss_pred             cCC--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEEC
Confidence            985  4457889999999999999998654321                11233    3468999999999999999999


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          210 DVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       210 gI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ||.|++|+.+++ ..|||+||+||+++.+|+++++
T Consensus       242 GI~~~~da~~~l-~aGAd~V~igr~ll~~P~~~~~  275 (301)
T PRK07259        242 GISSAEDAIEFI-MAGASAVQVGTANFYDPYAFPK  275 (301)
T ss_pred             CCCCHHHHHHHH-HcCCCceeEcHHHhcCcHHHHH
Confidence            999999999999 5899999999999999999987

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.97  E-value=1.2e-31  Score=252.74  Aligned_cols=241  Identities=19%  Similarity=0.243  Sum_probs=189.0

Q ss_pred             CCCCCceEEccccCC--------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (326)
                      ++++||+++|||...        |+..++...++.  |+|+++||.+.++......+   ...+.++-......+.+.+.
T Consensus         9 ~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   85 (327)
T cd02803           9 LTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYP---GQLGIYDDEQIPGLRKLTEA   85 (327)
T ss_pred             EeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCC---CCcCcCCHHHHHHHHHHHHH
Confidence            478999999999742        333444444443  78999999888766433211   11222110000111224566


Q ss_pred             ccCCCCcEEEEECCCC--------------------------------------HHHHHHHHHHhhc-CCCEEEEccC--
Q 020428           71 CHQERNHVVFQMGTSD--------------------------------------AVRALTAAKMVCK-DVAAIDINMG--  109 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~--------------------------------------~~~~~~aa~~~~~-~~d~idlN~g--  109 (326)
                      +|+.+.++++||+...                                      .++|+++|+++.+ |||+||||++  
T Consensus        86 vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~g  165 (327)
T cd02803          86 VHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHG  165 (327)
T ss_pred             HHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhh
Confidence            7777888888985210                                      2678999999887 9999999998  


Q ss_pred             -------CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC------CChHHHHHHHHHHHHcCCcEE
Q 020428          110 -------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL------KSSQDTVELARRIEKTGVSAL  174 (326)
Q Consensus       110 -------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g------~~~~~~~e~a~~l~~~G~d~i  174 (326)
                             ||..+.+.++||++++++++++.++++++++.+  ++||.+|++..      ++.+++.++++.++++|+|+|
T Consensus       166 yL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i  245 (327)
T cd02803         166 YLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDAL  245 (327)
T ss_pred             hHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence                   788899999999999999999999999999998  78999999963      467889999999999999999


Q ss_pred             EEeecccCCCCC--------CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          175 AVHGRKVADRPR--------DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       175 ~vh~r~~~~~~~--------~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ++++++..+...        .+.+++.++.+++.+++||+++|||.|+++++++++..|||+|++||+++.||+|+.+
T Consensus       246 ~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k  323 (327)
T cd02803         246 HVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNK  323 (327)
T ss_pred             EeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHH
Confidence            999987654322        2456788999999999999999999999999999976689999999999999999876

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=99.97  E-value=9.6e-31  Score=242.60  Aligned_cols=238  Identities=21%  Similarity=0.282  Sum_probs=184.2

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-ccccccccccC-------cccccccC------Cc--
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRVNEYIG-------STDFVEKG------TD--   64 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~~~~~-------~~~~~~~~------~~--   64 (326)
                      ++++||+++|-...-++..+.+.+...|+|.+.+..+..++.. +..+.......       ...+++..      .+  
T Consensus         6 ~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~   85 (289)
T cd02810           6 LKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVW   85 (289)
T ss_pred             EECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHH
Confidence            4789999999876656777777777889999999988876432 11111100000       00011110      00  


Q ss_pred             -ceeeecccC-CCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428           65 -SVVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN  141 (326)
Q Consensus        65 -~~~~~~~~~-~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~  141 (326)
                       +.+....+. .+.|+++||+|++++++.++++.+.+ |+|+||||++||+..     .+..++++++.+.++++++++.
T Consensus        86 ~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~-----~~~~~~~~~~~~~eiv~~vr~~  160 (289)
T cd02810          86 LQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVG-----GGRQLGQDPEAVANLLKAVKAA  160 (289)
T ss_pred             HHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccCHHHHHHHHHHHHHc
Confidence             111111222 35699999999999999999999987 899999999999864     2445889999999999999999


Q ss_pred             ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC----------------CCCC----cCCHHHHHHHHHhc
Q 020428          142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD----------------RPRD----PAKWGEIADIVAAL  201 (326)
Q Consensus       142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~----------------~~~~----~~~~~~i~~i~~~~  201 (326)
                      +++||++|++.+.+.++..++++.++++|+|+|++|+++...                .+++    +..+++++++++.+
T Consensus       161 ~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~  240 (289)
T cd02810         161 VDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARL  240 (289)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhc
Confidence            999999999998888899999999999999999999875421                1122    22578899999998


Q ss_pred             --CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428          202 --SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS  244 (326)
Q Consensus       202 --~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~  244 (326)
                        ++|||++|||.|++|+.+++ ..|||+||+||+++.| |++|.+
T Consensus       241 ~~~ipiia~GGI~~~~da~~~l-~~GAd~V~vg~a~~~~GP~~~~~  285 (289)
T cd02810         241 QLDIPIIGVGGIDSGEDVLEML-MAGASAVQVATALMWDGPDVIRK  285 (289)
T ss_pred             CCCCCEEEECCCCCHHHHHHHH-HcCccHheEcHHHHhcCccHHHH
Confidence              89999999999999999999 5899999999999999 999986

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=99.97  E-value=5.9e-31  Score=250.13  Aligned_cols=239  Identities=14%  Similarity=0.158  Sum_probs=182.0

Q ss_pred             CCCCCceEEccccC--------CCCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVR--------VGTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g--------~t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      +++|||+++|||..        +|+.......++. |+|+++||.+.+.......+   ...+.++  +++  ..+.+.+
T Consensus        11 ~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~---~~~~~~~d~~i~--~~~~l~~   85 (353)
T cd04735          11 VTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFE---GGFSADDDSDIP--GLRKLAQ   85 (353)
T ss_pred             eEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCC---CCceecChhhhH--HHHHHHH
Confidence            57899999999963        2334444444443 79999999888765322111   1112211  111  1122466


Q ss_pred             cccCCCCcEEEEECCCC----------------------------------------HHHHHHHHHHhhc-CCCEEEEcc
Q 020428           70 TCHQERNHVVFQMGTSD----------------------------------------AVRALTAAKMVCK-DVAAIDINM  108 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~~----------------------------------------~~~~~~aa~~~~~-~~d~idlN~  108 (326)
                      .+|+.+..+++||+...                                        .++|++||+++++ |||+||||+
T Consensus        86 ~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~  165 (353)
T cd04735          86 AIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHG  165 (353)
T ss_pred             HHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence            77888889999995210                                        2578899999987 999999998


Q ss_pred             C---------CCccccccccccccccCChHHHHHHHHHHhhccc----CcEEEEecCC--------CChHHHHHHHHHHH
Q 020428          109 G---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD----VPVTCKIRLL--------KSSQDTVELARRIE  167 (326)
Q Consensus       109 g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~----~pv~vK~r~g--------~~~~~~~e~a~~l~  167 (326)
                      +         ||..|.+.++||++++++.+++.+|+++||++++    .++.|++|++        .+.++++++++.++
T Consensus       166 ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~  245 (353)
T cd04735         166 ANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLA  245 (353)
T ss_pred             ccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHH
Confidence            6         8999999999999999999999999999999986    5666666663        24578999999999


Q ss_pred             HcCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          168 KTGVSALAVHGRKVA--DRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      ++|+|+|+||+....  ..+.....++.++.+++.+  ++|||++|||+|+++++++++. |||+|++||+++.||++++
T Consensus       246 ~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~  324 (353)
T cd04735         246 DKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDWVE  324 (353)
T ss_pred             HcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHH
Confidence            999999999976432  2222333567777788776  8999999999999999999965 9999999999999999999


Q ss_pred             cc
Q 020428          244 SQ  245 (326)
Q Consensus       244 ~~  245 (326)
                      +.
T Consensus       325 k~  326 (353)
T cd04735         325 KI  326 (353)
T ss_pred             HH
Confidence            84

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.97  E-value=2e-30  Score=244.60  Aligned_cols=236  Identities=15%  Similarity=0.155  Sum_probs=184.1

Q ss_pred             CCCCCceEEccccCC--------CCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      +++||||++|||...        |+...+...++. | ++++||.+.++......+   ...+.++  +++  ..+.+.+
T Consensus        11 ~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~---~~~~l~~d~~i~--~lr~la~   84 (338)
T cd02933          11 LTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYP---NTPGIYTDEQVE--GWKKVTD   84 (338)
T ss_pred             EeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCC---CCCccCCHHHHH--HHHHHHH
Confidence            478999999999632        333344333333 6 999999888765432211   1111111  111  1122456


Q ss_pred             cccCCCCcEEEEECC--C--------------------------------C---------------HHHHHHHHHHhhc-
Q 020428           70 TCHQERNHVVFQMGT--S--------------------------------D---------------AVRALTAAKMVCK-   99 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g--~--------------------------------~---------------~~~~~~aa~~~~~-   99 (326)
                      .+|+.+.++++||..  .                                .               .++|++||+++.+ 
T Consensus        85 ~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~a  164 (338)
T cd02933          85 AVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEA  164 (338)
T ss_pred             HHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            677788889999842  0                                0               2578899999987 


Q ss_pred             CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCC---------CChHHHH
Q 020428          100 DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLL---------KSSQDTV  160 (326)
Q Consensus       100 ~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g---------~~~~~~~  160 (326)
                      |||+||||+||         |..|.+.+.||+++.++.+++.+++++||++++. ||++|++..         .+.++..
T Consensus       165 GfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~  244 (338)
T cd02933         165 GFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFS  244 (338)
T ss_pred             CCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHH
Confidence            99999999999         9999999999999999999999999999999854 899999852         2567889


Q ss_pred             HHHHHHHHcCCcEEEE-eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          161 ELARRIEKTGVSALAV-HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       161 e~a~~l~~~G~d~i~v-h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      ++++.+++.|+|+|+| +|+...+.  +..+++..+++++.+++||+++|+|+ ++++++++++.+||+|++||+++.||
T Consensus       245 ~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP  321 (338)
T cd02933         245 YLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANP  321 (338)
T ss_pred             HHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCc
Confidence            9999999999999999 56654432  56789999999999999999999997 99999999777799999999999999


Q ss_pred             cccccc
Q 020428          240 SIFSSQ  245 (326)
Q Consensus       240 ~lf~~~  245 (326)
                      +|+++.
T Consensus       322 ~~~~k~  327 (338)
T cd02933         322 DLVERL  327 (338)
T ss_pred             CHHHHH
Confidence            999983

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=99.97  E-value=2.6e-30  Score=247.74  Aligned_cols=242  Identities=13%  Similarity=0.166  Sum_probs=183.7

Q ss_pred             CCCCCceEEccccC--C-------CCHHHHHHHHHc--CCCeEEeCceecccccccc--cccccccCcc--cccccCCcc
Q 020428            1 MDYQNKLVLAPMVR--V-------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCE--RRVNEYIGST--DFVEKGTDS   65 (326)
Q Consensus         1 l~l~~~iilAPM~g--~-------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~--~~~~~~~~~~--~~~~~~~~~   65 (326)
                      ++||||+++|||..  .       |+.......++.  |+|+++||.+.++......  .... .+...  ++++  ..+
T Consensus        10 ~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~--~~k   86 (382)
T cd02931          10 VEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLP-CPTYNPTAFIR--TAK   86 (382)
T ss_pred             EEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCcc-ccccCCHHHhH--HHH
Confidence            47899999999953  2       222333333333  7999999988776532110  0000 00000  0111  112


Q ss_pred             eeeecccCCCCcEEEEECCC----------------------------C-------------HHHHHHHHHHhhc-CCCE
Q 020428           66 VVFRTCHQERNHVVFQMGTS----------------------------D-------------AVRALTAAKMVCK-DVAA  103 (326)
Q Consensus        66 ~~~~~~~~~~~p~~vQl~g~----------------------------~-------------~~~~~~aa~~~~~-~~d~  103 (326)
                      .+.+.+|+.+.++++||+..                            .             .++|.+||+++++ |||+
T Consensus        87 ~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDg  166 (382)
T cd02931          87 EMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDG  166 (382)
T ss_pred             HHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence            24677788888999999521                            0             2578999999987 9999


Q ss_pred             EEEcc---CC-------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC-------------------
Q 020428          104 IDINM---GC-------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL-------------------  152 (326)
Q Consensus       104 idlN~---gc-------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~-------------------  152 (326)
                      ||||+   ||       |..|.+.++||++++++++++.+|+++||+++  +.||++|++.                   
T Consensus       167 VEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~  246 (382)
T cd02931         167 VEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQE  246 (382)
T ss_pred             EEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccccccccc
Confidence            99998   75       78999999999999999999999999999998  5799999984                   


Q ss_pred             -CCChHHHHHHHHHHHHcCCcEEEEeecccCCCC-C------C-cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          153 -LKSSQDTVELARRIEKTGVSALAVHGRKVADRP-R------D-PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       153 -g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~-~------~-~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                       |.+.+++.++++.++++|+|+|+||+++..+.+ .      + ...++.++.+++.+++||+++|+|++++++++++++
T Consensus       247 ~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~  326 (382)
T cd02931         247 KGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINE  326 (382)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHc
Confidence             345678999999999999999999988754321 1      1 122567889999999999999999999999999987


Q ss_pred             cCCcEEEeccchhcCccccccc
Q 020428          224 AGASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf~~~  245 (326)
                      .+||+|++||+++.||+|+++.
T Consensus       327 g~~D~V~~gR~~ladP~l~~k~  348 (382)
T cd02931         327 GIADMISLGRPLLADPDVVNKI  348 (382)
T ss_pred             CCCCeeeechHhHhCccHHHHH
Confidence            7799999999999999999984

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=99.97  E-value=8.2e-30  Score=247.89  Aligned_cols=238  Identities=19%  Similarity=0.229  Sum_probs=178.8

Q ss_pred             CCCCCceEEccccCC-CCHHHHHHHHHcCCCeEEeCceecccccccc-ccccc----ccCcccccccC------Cc---c
Q 020428            1 MDYQNKLVLAPMVRV-GTLPFRLLAAQYGADITYGEEIIDHKLLKCE-RRVNE----YIGSTDFVEKG------TD---S   65 (326)
Q Consensus         1 l~l~~~iilAPM~g~-t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~-~~~~~----~~~~~~~~~~~------~~---~   65 (326)
                      ++++||+++|-=.-. +....+.+.. .|+|.+.+..+. ....... +....    ......|.+..      ..   +
T Consensus        11 l~l~nPv~~aag~~~~~~~~~~~~~~-~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~~~~~~~   88 (420)
T PRK08318         11 IKSPNPFWLASAPPTNKYYNVARAFE-AGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRPLEVNLR   88 (420)
T ss_pred             EecCCCcEeCCcCCCCCHHHHHHHHH-hCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccCHHHHHH
Confidence            468999999842112 2344455554 699998888777 3332222 21111    01000011100      00   0


Q ss_pred             eeeecccC-CCCcEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428           66 VVFRTCHQ-ERNHVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL  142 (326)
Q Consensus        66 ~~~~~~~~-~~~p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~  142 (326)
                      .+.+.... .+.|+++||+|+ +++++.++++.+++ ++|+||||+|||+ ++..++.|+.++++|+.+.++++++++.+
T Consensus        89 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~~g~~~~~~~~~~~~i~~~v~~~~  167 (420)
T PRK08318         89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMYTRWVKRGS  167 (420)
T ss_pred             HHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccCCcccccCCHHHHHHHHHHHHhcc
Confidence            00011111 235899999998 99999999999987 8999999999999 45567899999999999999999999999


Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE---------------------EeecccCCCCCCcC----CHHHHHHH
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALA---------------------VHGRKVADRPRDPA----KWGEIADI  197 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~---------------------vh~r~~~~~~~~~~----~~~~i~~i  197 (326)
                      ++||+||++.  +..+..++++.++++|+|+|+                     +|+|+..+.++|++    .|+.|+++
T Consensus       168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~  245 (420)
T PRK08318        168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEI  245 (420)
T ss_pred             CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHH
Confidence            9999999995  334578999999999999999                     45666677888887    49999999


Q ss_pred             HHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          198 VAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       198 ~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      ++.+   ++|||++|||.|++|+.+++ .+|||+||||||++. +|.++.+
T Consensus       246 ~~~~~~~~ipIig~GGI~s~~da~e~i-~aGA~~Vqi~ta~~~~gp~ii~~  295 (420)
T PRK08318        246 ARDPETRGLPISGIGGIETWRDAAEFI-LLGAGTVQVCTAAMQYGFRIVED  295 (420)
T ss_pred             HhccccCCCCEEeecCcCCHHHHHHHH-HhCCChheeeeeeccCCchhHHH
Confidence            9987   89999999999999999999 599999999999998 7888776

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=99.97  E-value=3.9e-30  Score=243.67  Aligned_cols=240  Identities=14%  Similarity=0.159  Sum_probs=183.7

Q ss_pred             CCCCCceEEccccC-------CCCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcc--cccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVR-------VGTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g-------~t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~   69 (326)
                      +++|||++++||..       .|+..+....++.  |+|+++||.+.++.......  ....+.+  ++++  ..+.+.+
T Consensus        10 ~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~--~~~~~~~~d~~i~--~~~~l~d   85 (361)
T cd04747          10 LTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGD--PNVPRFHGEDALA--GWKKVVD   85 (361)
T ss_pred             EEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCC--CCCCccCCHHHHH--HHHHHHH
Confidence            47899999999963       2444444444444  78999999887753221110  0111111  1111  1122456


Q ss_pred             cccCCCCcEEEEECC--CC--------------------------------------HHHHHHHHHHhhc-CCCEEEEcc
Q 020428           70 TCHQERNHVVFQMGT--SD--------------------------------------AVRALTAAKMVCK-DVAAIDINM  108 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g--~~--------------------------------------~~~~~~aa~~~~~-~~d~idlN~  108 (326)
                      .+|+.+.++++||+.  ..                                      .++|.+||+++++ |||+||||+
T Consensus        86 ~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~  165 (361)
T cd04747          86 EVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHG  165 (361)
T ss_pred             HHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence            678888889999942  10                                      2478999999987 999999999


Q ss_pred             CC---------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC----------CCChHHHHHHHHHHH
Q 020428          109 GC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL----------LKSSQDTVELARRIE  167 (326)
Q Consensus       109 gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~----------g~~~~~~~e~a~~l~  167 (326)
                      +|         |..|.++++||+++.++.+++.+|+++||+++  +.||.+|++.          |.+.++..++++.++
T Consensus       166 ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~  245 (361)
T cd04747         166 AHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV  245 (361)
T ss_pred             ccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH
Confidence            99         99999999999999999999999999999998  5899999984          235567889999999


Q ss_pred             HcCCcEEEEeeccc-CCCCCCcCCHHHHHHHHHhcCCcEEEeCCC------------------CCHHHHHHHHHhcCCcE
Q 020428          168 KTGVSALAVHGRKV-ADRPRDPAKWGEIADIVAALSIPVIANGDV------------------FEYDDFQRIKTAAGASS  228 (326)
Q Consensus       168 ~~G~d~i~vh~r~~-~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI------------------~s~~d~~~~l~~~Gad~  228 (326)
                      +.|+|+|++..... .+.+. +.+++..+.+++.+++||+++|+|                  +|+++++++++..+||+
T Consensus       246 ~~gvd~i~vs~g~~~~~~~~-~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~  324 (361)
T cd04747         246 DAGVDIFHCSTRRFWEPEFE-GSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDL  324 (361)
T ss_pred             HcCCCEEEecCCCccCCCcC-ccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCe
Confidence            99999998876532 22332 336778888999999999999999                  69999999997777999


Q ss_pred             EEeccchhcCccccccc
Q 020428          229 VMAARGALWNASIFSSQ  245 (326)
Q Consensus       229 VmiGr~~l~~P~lf~~~  245 (326)
                      |++||+++.||||+++.
T Consensus       325 V~~gR~~iadP~~~~k~  341 (361)
T cd04747         325 VAVGRALLSDPAWVAKV  341 (361)
T ss_pred             ehhhHHHHhCcHHHHHH
Confidence            99999999999999873

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=99.97  E-value=5.1e-30  Score=242.49  Aligned_cols=239  Identities=18%  Similarity=0.210  Sum_probs=182.1

Q ss_pred             CCCCCceEEccccCC-------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcc--cccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVRV-------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~-------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~   69 (326)
                      ++++||+++|||...       |+.......++.  |+|+++||.+.++.-....+   ...+.+  ++++  ..+.+.+
T Consensus        10 ~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~---~~~~~~~d~~~~--~~~~l~~   84 (336)
T cd02932          10 VTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITP---GDLGLWNDEQIE--ALKRIVD   84 (336)
T ss_pred             EEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCC---CceeecCHHHHH--HHHHHHH
Confidence            468999999999642       333333333333  79999999887765322111   111111  1111  0112355


Q ss_pred             cccCCCCcEEEEECCC---------------------------------------C------------HHHHHHHHHHhh
Q 020428           70 TCHQERNHVVFQMGTS---------------------------------------D------------AVRALTAAKMVC   98 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~---------------------------------------~------------~~~~~~aa~~~~   98 (326)
                      .+|+.+.++++||+..                                       .            .++|+++|+++.
T Consensus        85 ~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~  164 (336)
T cd02932          85 FIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAV  164 (336)
T ss_pred             HHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            6677778888887320                                       0            257889999987


Q ss_pred             c-CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHH
Q 020428           99 K-DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTV  160 (326)
Q Consensus        99 ~-~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~  160 (326)
                      + |||+||||+||         |..+.+.++||++++++++++.++++++++.+  +.||.+|++.      +++.+++.
T Consensus       165 ~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~  244 (336)
T cd02932         165 EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSV  244 (336)
T ss_pred             HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHH
Confidence            7 99999999987         88999999999999999999999999999999  7899999984      56788999


Q ss_pred             HHHHHHHHcCCcEEEEeec--ccCCCCC--CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          161 ELARRIEKTGVSALAVHGR--KVADRPR--DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r--~~~~~~~--~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++++.+++.|+|+|+||..  +..+.+.  ...+++..+++++.+++||+++|+|.|+++++++++...||+|++||+++
T Consensus       245 ~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i  324 (336)
T cd02932         245 ELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELL  324 (336)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHH
Confidence            9999999999999999843  3333221  22346788999999999999999999999999999766699999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||+|..+
T Consensus       325 ~dP~~~~k  332 (336)
T cd02932         325 RNPYWPLH  332 (336)
T ss_pred             hCccHHHH
Confidence            99999765

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=99.97  E-value=7.7e-30  Score=242.63  Aligned_cols=240  Identities=14%  Similarity=0.131  Sum_probs=180.2

Q ss_pred             CCCCCceEEcccc-CC------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMV-RV------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~-g~------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      +++||||++|||. +.      |+..++...++.  |+|+++||.+.++......+   ...+.++  +++  ..+.+.+
T Consensus        10 ~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~---~~~~~~~~~~i~--~~~~l~~   84 (353)
T cd02930          10 TTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGP---GGPVLNSPRQAA--GHRLITD   84 (353)
T ss_pred             EEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCC---CCcccCCHHHHH--HHHHHHH
Confidence            4789999999996 22      334444444443  78999999887654322111   1111111  111  1122456


Q ss_pred             cccCCCCcEEEEECC--C--------------------C------------HHHHHHHHHHhhc-CCCEEEEccC-----
Q 020428           70 TCHQERNHVVFQMGT--S--------------------D------------AVRALTAAKMVCK-DVAAIDINMG-----  109 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g--~--------------------~------------~~~~~~aa~~~~~-~~d~idlN~g-----  109 (326)
                      ..|+.+.++++||+.  .                    .            .++|++||+++.+ |||+||||.+     
T Consensus        85 ~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl  164 (353)
T cd02930          85 AVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLI  164 (353)
T ss_pred             HHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHH
Confidence            678888899999942  1                    0            3678999999877 9999999876     


Q ss_pred             ----CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--------CChHHHHHHHHHHHHcCCcEEEEe
Q 020428          110 ----CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--------KSSQDTVELARRIEKTGVSALAVH  177 (326)
Q Consensus       110 ----cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g--------~~~~~~~e~a~~l~~~G~d~i~vh  177 (326)
                          ||..+.++++||++++++++++.++++++|+.++.++.+++|++        ++.++++++++.|+++|+|+|+|+
T Consensus       165 ~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs  244 (353)
T cd02930         165 NQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTG  244 (353)
T ss_pred             HHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence                99999999999999999999999999999999966655555553        466789999999999999999995


Q ss_pred             ec-----ccC-CCCCCcC-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428          178 GR-----KVA-DRPRDPA-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       178 ~r-----~~~-~~~~~~~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~  245 (326)
                      ..     +.. +.+.++. ..+..+++++.+++||+++|+|.|++++++++++.++|+|++||+++.||||+++.
T Consensus       245 ~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~  319 (353)
T cd02930         245 IGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKA  319 (353)
T ss_pred             CCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence            32     221 1122222 24556889999999999999999999999999777799999999999999999983

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=99.97  E-value=7.2e-29  Score=230.17  Aligned_cols=236  Identities=17%  Similarity=0.118  Sum_probs=170.0

Q ss_pred             CCCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccc-cccccc----cccCcccccccCCcce---eeec-
Q 020428            1 MDYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLK-CERRVN----EYIGSTDFVEKGTDSV---VFRT-   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~~----~~~~~~~~~~~~~~~~---~~~~-   70 (326)
                      ++++||+++|.=.--.+ ..++.+. ..|+|.+.+..+..++... ..+...    ..++...+-+.....+   +... 
T Consensus         6 l~l~nPi~~Asg~~~~~~e~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~   84 (294)
T cd04741           6 LTISPPLMNAAGPWCTTLEDLLELA-ASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTIS   84 (294)
T ss_pred             eeCCCCCEECCCCCCCCHHHHHHHH-HcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHh
Confidence            57899999986331133 3455554 4799999998887765421 111110    0111111111111111   1111 


Q ss_pred             --ccCCCCcEEEEECCCCHHHHHHHHHHhhc----CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccC
Q 020428           71 --CHQERNHVVFQMGTSDAVRALTAAKMVCK----DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV  144 (326)
Q Consensus        71 --~~~~~~p~~vQl~g~~~~~~~~aa~~~~~----~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~  144 (326)
                        .++.+.|+++||+|+ ++++.++++.+.+    ++|+||||++||+..     .+..+..+|+.+.++++++++.+++
T Consensus        85 ~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~i  158 (294)
T cd04741          85 DGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP-----GKPPPAYDFDATLEYLTAVKAAYSI  158 (294)
T ss_pred             hhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC-----CcccccCCHHHHHHHHHHHHHhcCC
Confidence              112456999999999 9999999998875    489999999999952     2235678999999999999999999


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHc--CCcEEEEeecc-----------c-----CCCC---CCc----CCHHHHHHHHH
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKT--GVSALAVHGRK-----------V-----ADRP---RDP----AKWGEIADIVA  199 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~--G~d~i~vh~r~-----------~-----~~~~---~~~----~~~~~i~~i~~  199 (326)
                      ||+||+|.+++..+..++++.+.++  |+|+|+++++.           .     .+.+   +|+    ..++.++++++
T Consensus       159 Pv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~  238 (294)
T cd04741         159 PVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRR  238 (294)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHH
Confidence            9999999988877888999999998  99999954222           1     1222   222    23566788888


Q ss_pred             hc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          200 AL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       200 ~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      .+  ++|||++|||.|.+|+.+++ .+|||+||+||+++. +||+|++
T Consensus       239 ~~~~~ipIig~GGI~s~~da~e~l-~aGA~~Vqv~ta~~~~gp~~~~~  285 (294)
T cd04741         239 LLPSEIQIIGVGGVLDGRGAFRMR-LAGASAVQVGTALGKEGPKVFAR  285 (294)
T ss_pred             hcCCCCCEEEeCCCCCHHHHHHHH-HcCCCceeEchhhhhcCchHHHH
Confidence            88  49999999999999999999 599999999999995 9999987

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.96  E-value=6.6e-29  Score=235.09  Aligned_cols=235  Identities=16%  Similarity=0.187  Sum_probs=174.7

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccc-ccccccccc------ccCcccccccCCccee--eecc
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKL-LKCERRVNE------YIGSTDFVEKGTDSVV--FRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~   71 (326)
                      ++++||+++|-=.. .+...-..+...|+|.+.+..+..++- ....+....      .++...+-+...+.++  ++..
T Consensus        56 l~l~nPi~~AsG~~-~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~  134 (344)
T PRK05286         56 LTFPNPVGLAAGFD-KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKA  134 (344)
T ss_pred             EECCCCCEECCCCC-CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHh
Confidence            46899998875222 233333446677999999998886522 122111110      0111111111001110  1111


Q ss_pred             cCCCCcEEEEECCC-------CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-
Q 020428           72 HQERNHVVFQMGTS-------DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-  143 (326)
Q Consensus        72 ~~~~~p~~vQl~g~-------~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-  143 (326)
                      . .+.|++++|+|+       ..+++.+.++.+.+++|+||+|++||+.+      |.....+++.+.++++++++.++ 
T Consensus       135 ~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~  207 (344)
T PRK05286        135 Y-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAE  207 (344)
T ss_pred             c-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhc
Confidence            1 356999999886       56899999999877899999999999874      33448999999999999999987 


Q ss_pred             ----CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-------------CCCCCcC----CHHHHHHHHHhc-
Q 020428          144 ----VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-------------DRPRDPA----KWGEIADIVAAL-  201 (326)
Q Consensus       144 ----~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------~~~~~~~----~~~~i~~i~~~~-  201 (326)
                          +||+||++.+++.++..++++.++++|+|+|++|+++..             +.+++++    .|+.++++++.+ 
T Consensus       208 ~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~  287 (344)
T PRK05286        208 LHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELG  287 (344)
T ss_pred             cccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence                999999998877778999999999999999999998632             2344443    688999999998 


Q ss_pred             -CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          202 -SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       202 -~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                       ++|||++|||.|++|+.+++ ..|||+||+||+++. +|+++++
T Consensus       288 ~~ipIig~GGI~s~eda~e~l-~aGAd~V~v~~~~~~~gP~~~~~  331 (344)
T PRK05286        288 GRLPIIGVGGIDSAEDAYEKI-RAGASLVQIYSGLIYEGPGLVKE  331 (344)
T ss_pred             CCCCEEEECCCCCHHHHHHHH-HcCCCHHHHHHHHHHhCchHHHH
Confidence             89999999999999999999 599999999999987 5999987

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=99.96  E-value=1.3e-28  Score=231.88  Aligned_cols=235  Identities=17%  Similarity=0.222  Sum_probs=172.8

Q ss_pred             CCCCCceEEccccCCCCH-HHHHHHHHcCCCeEEeCceecccc-ccccccccc------ccCcccccccCCccee--eec
Q 020428            1 MDYQNKLVLAPMVRVGTL-PFRLLAAQYGADITYGEEIIDHKL-LKCERRVNE------YIGSTDFVEKGTDSVV--FRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~-~fr~~~~~~G~~l~~te~i~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~   70 (326)
                      ++++||+++|-=.. .+. ..+.+. +.|+|.+.+..++.++- ....+....      .+....+-+...+.++  ++.
T Consensus        46 l~l~nPi~~AsG~~-~~~~~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~  123 (327)
T cd04738          46 LTFPNPVGLAAGFD-KNAEAIDALL-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKK  123 (327)
T ss_pred             EECCCCCEeCcCCC-CCHHHHHHHH-HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHH
Confidence            46899998875222 233 344444 77999999988876531 111111100      0011111011000000  111


Q ss_pred             ccCCCCcEEEEECCCC-------HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc
Q 020428           71 CHQERNHVVFQMGTSD-------AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD  143 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~-------~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~  143 (326)
                      ....+.|+++||+|++       .+++++.++.+.+.+|+||||++||+..      |...+.+|+.+.++++++++.++
T Consensus       124 ~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~  197 (327)
T cd04738         124 RRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERN  197 (327)
T ss_pred             hccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHh
Confidence            1113469999999987       6889998888877789999999999863      34458999999999999999886


Q ss_pred             -----CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-------------CCCCCcC----CHHHHHHHHHhc
Q 020428          144 -----VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-------------DRPRDPA----KWGEIADIVAAL  201 (326)
Q Consensus       144 -----~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------~~~~~~~----~~~~i~~i~~~~  201 (326)
                           +||+||++.+++.++..++++.++++|+|+|++|+++..             +.+++++    .++.++++++.+
T Consensus       198 ~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~  277 (327)
T cd04738         198 KLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLT  277 (327)
T ss_pred             hcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHh
Confidence                 999999998877778999999999999999999998652             2345544    378899999998


Q ss_pred             --CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          202 --SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       202 --~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                        ++|||++|||.|++|+.+++ .+|||+||+||+++. +|++|.+
T Consensus       278 ~~~ipIi~~GGI~t~~da~e~l-~aGAd~V~vg~~~~~~gP~~~~~  322 (327)
T cd04738         278 GGKIPIIGVGGISSGEDAYEKI-RAGASLVQLYTGLVYEGPGLVKR  322 (327)
T ss_pred             CCCCcEEEECCCCCHHHHHHHH-HcCCCHHhccHHHHhhCcHHHHH
Confidence              89999999999999999999 599999999999987 5999986

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=99.96  E-value=9.1e-29  Score=236.19  Aligned_cols=240  Identities=13%  Similarity=0.057  Sum_probs=178.3

Q ss_pred             CCCCCceEEccccCC----CCHHHHHH-HHH--cCCCeEEeCceecccccccccccccccCccc--ccccCCcceeeecc
Q 020428            1 MDYQNKLVLAPMVRV----GTLPFRLL-AAQ--YGADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~----t~~~fr~~-~~~--~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   71 (326)
                      +++|||+++|||...    ++..+... .++  -|+|+++||.+.++.-....+.  ...+.++  +++  ..+.+.+.+
T Consensus        17 ~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~--~~~~l~~d~~i~--~~~~l~~~v   92 (370)
T cd02929          17 VTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPR--ISARLWDDGDIR--NLAAMTDAV   92 (370)
T ss_pred             EEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcc--cCcCcCCHHHHH--HHHHHHHHH
Confidence            478999999999632    22222222 212  3789999998877654321110  0122221  111  112245667


Q ss_pred             cCCCCcEEEEECC--C------------------------C---------------HHHHHHHHHHhhc-CCCEEEEccC
Q 020428           72 HQERNHVVFQMGT--S------------------------D---------------AVRALTAAKMVCK-DVAAIDINMG  109 (326)
Q Consensus        72 ~~~~~p~~vQl~g--~------------------------~---------------~~~~~~aa~~~~~-~~d~idlN~g  109 (326)
                      |+.+.++++||+.  .                        .               .++|++||+++.+ |||+||||+|
T Consensus        93 h~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~a  172 (370)
T cd02929          93 HKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAA  172 (370)
T ss_pred             HHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence            7788889999841  0                        0               2578899999987 9999999999


Q ss_pred             C---------CccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC----------CChHHHHHHHHHHHHcC
Q 020428          110 C---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL----------KSSQDTVELARRIEKTG  170 (326)
Q Consensus       110 c---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g----------~~~~~~~e~a~~l~~~G  170 (326)
                      |         |..|.+.++||++++++.+++.+++++|+++++.++.|++|++          ++.++++++++.+++. 
T Consensus       173 hGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~-  251 (370)
T cd02929         173 HGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDEL-  251 (370)
T ss_pred             ccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhh-
Confidence            9         9999999999999999999999999999999976666666653          2456788999999876 


Q ss_pred             CcEEEEeecccC------CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          171 VSALAVHGRKVA------DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       171 ~d~i~vh~r~~~------~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +|++.++.....      ..+.....++..+++++.+++|||++|+|.++++++++++..+||+|++||+++.||+|+++
T Consensus       252 ~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k  331 (370)
T cd02929         252 PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKK  331 (370)
T ss_pred             CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHH
Confidence            899998754321      11123345788899999999999999999999999999977779999999999999999998


Q ss_pred             c
Q 020428          245 Q  245 (326)
Q Consensus       245 ~  245 (326)
                      .
T Consensus       332 ~  332 (370)
T cd02929         332 I  332 (370)
T ss_pred             H
Confidence            4

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.96  E-value=9.3e-29  Score=256.46  Aligned_cols=240  Identities=18%  Similarity=0.199  Sum_probs=181.8

Q ss_pred             CCCCCceEEccccCCC-------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeecc
Q 020428            1 MDYQNKLVLAPMVRVG-------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t-------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (326)
                      ++++||++++||..++       +.....+.+++  |+++++||.+.++...+..+   ...+.++-......+.+.+.+
T Consensus       408 ~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~---~~~~~~~d~~i~~~~~~~~~v  484 (765)
T PRK08255        408 LTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITP---GCPGLYNDEQEAAWKRIVDFV  484 (765)
T ss_pred             EeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCC---CCCccCCHHHHHHHHHHHHHH
Confidence            4789999999997533       33333333333  79999999888765432211   112222110001112245667


Q ss_pred             cCC-CCcEEEEECC--C-----------------------------------C------------HHHHHHHHHHhhc-C
Q 020428           72 HQE-RNHVVFQMGT--S-----------------------------------D------------AVRALTAAKMVCK-D  100 (326)
Q Consensus        72 ~~~-~~p~~vQl~g--~-----------------------------------~------------~~~~~~aa~~~~~-~  100 (326)
                      |+. +..+++||+.  .                                   .            .++|++||+++.+ |
T Consensus       485 h~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aG  564 (765)
T PRK08255        485 HANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAEAG  564 (765)
T ss_pred             HhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            776 4788899831  0                                   0            2578899999877 9


Q ss_pred             CCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHHHHH
Q 020428          101 VAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTVELA  163 (326)
Q Consensus       101 ~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~e~a  163 (326)
                      ||+||||+|         ||..|.++++||+++.++.+++.+|+++|++++  +.||++|++.      |++.+++++++
T Consensus       565 fDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~  644 (765)
T PRK08255        565 FDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIA  644 (765)
T ss_pred             CCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHH
Confidence            999999999         999999999999999999999999999999998  5899999997      35678899999


Q ss_pred             HHHHHcCCcEEEEe-ecccCCC---CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          164 RRIEKTGVSALAVH-GRKVADR---PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       164 ~~l~~~G~d~i~vh-~r~~~~~---~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +.++++|+|+|+|| |++..+.   +......+..+++++.+++||+++|+|+|++++++++++.+||+||+||+++.||
T Consensus       645 ~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP  724 (765)
T PRK08255        645 RAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADP  724 (765)
T ss_pred             HHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCc
Confidence            99999999999999 4443221   1112235667889999999999999999999999999888899999999999999


Q ss_pred             cccc
Q 020428          240 SIFS  243 (326)
Q Consensus       240 ~lf~  243 (326)
                      ++..
T Consensus       725 ~~~~  728 (765)
T PRK08255        725 AWTL  728 (765)
T ss_pred             cHHH
Confidence            5533

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=99.96  E-value=8.1e-28  Score=227.24  Aligned_cols=241  Identities=18%  Similarity=0.207  Sum_probs=183.3

Q ss_pred             CCCCCceEEccccCCC--------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRVG--------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t--------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (326)
                      ++|+||+++|||...+        +...+....+.  |+|+++||.+.++.-.+..+   ...+.++.......+.+.+.
T Consensus        15 ~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~---~~~~l~~d~~i~~~~~vt~a   91 (363)
T COG1902          15 LTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYP---GQPGLWSDAQIPGLKRLTEA   91 (363)
T ss_pred             EEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCC---CCCccCChhHhHHHHHHHHH
Confidence            4789999999999743        34455555554  59999999777665432111   11122211101112235667


Q ss_pred             ccCCCCcEEEEECCCC----------------------------------------HHHHHHHHHHhhc-CCCEEEEccC
Q 020428           71 CHQERNHVVFQMGTSD----------------------------------------AVRALTAAKMVCK-DVAAIDINMG  109 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~----------------------------------------~~~~~~aa~~~~~-~~d~idlN~g  109 (326)
                      .|+.+.++++||++..                                        .++|++||+++.+ |||+||||.+
T Consensus        92 vH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~A  171 (363)
T COG1902          92 VHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGA  171 (363)
T ss_pred             HHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeec
Confidence            7888889999996211                                        2579999999987 9999999976


Q ss_pred             ---------CCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC-------CCChHHHHHHHHHHHHcC-
Q 020428          110 ---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL-------LKSSQDTVELARRIEKTG-  170 (326)
Q Consensus       110 ---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~-------g~~~~~~~e~a~~l~~~G-  170 (326)
                               +|..|.|+|.||+++.++.+++.|++++|+++++  .||.+++..       |++.++..++++.|++.| 
T Consensus       172 hGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~  251 (363)
T COG1902         172 HGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGL  251 (363)
T ss_pred             cchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCC
Confidence                     8999999999999999999999999999999994  578888887       245678999999999999 


Q ss_pred             CcEEEEeecccC--CC--CC-CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          171 VSALAVHGRKVA--DR--PR-DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       171 ~d~i~vh~r~~~--~~--~~-~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +|+|++.+-...  +.  .. ..........++..+++|||++|+|++++.++++++..+||.|.+||+++.||.|..+
T Consensus       252 ~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k  330 (363)
T COG1902         252 VDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLK  330 (363)
T ss_pred             ccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHH
Confidence            799999765442  11  11 1123345567888889999999999999999999965459999999999999999887

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=99.95  E-value=2.7e-26  Score=215.68  Aligned_cols=234  Identities=19%  Similarity=0.237  Sum_probs=167.2

Q ss_pred             CCCCCceEEc--cccCCCCHHHHHHHHHcCCCeEEeCceecccccc---ccccc----------ccccCcccccccCCcc
Q 020428            1 MDYQNKLVLA--PMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK---CERRV----------NEYIGSTDFVEKGTDS   65 (326)
Q Consensus         1 l~l~~~iilA--PM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~---~~~~~----------~~~~~~~~~~~~~~~~   65 (326)
                      ++++||+++|  |... +...++. +...|+|.+.|..++.++..+   ..+..          ...+....+-+...+.
T Consensus         9 l~l~nPv~~ASg~~~~-~~e~~~~-~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~~   86 (325)
T cd04739           9 LSLKNPLVASASPLSR-NLDNIRR-LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPEE   86 (325)
T ss_pred             EecCCCCEeCCcCCCC-CHHHHHH-HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHHH
Confidence            4789999996  4322 2234444 667799999999887664211   11000          0001111111110011


Q ss_pred             e---eeecccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428           66 V---VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN  141 (326)
Q Consensus        66 ~---~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~  141 (326)
                      +   +.+.....+.|+++||+|++++++.++++.+++ |+|+||||++||...  .+.+|+.+   ++.+.++++++++.
T Consensus        87 ~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~~g~~~---~~~~~eiv~~v~~~  161 (325)
T cd04739          87 YLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDISGAEV---EQRYLDILRAVKSA  161 (325)
T ss_pred             HHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCcccchH---HHHHHHHHHHHHhc
Confidence            0   111112224699999999999999999999987 899999999996422  24455544   57899999999999


Q ss_pred             ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------------CCCCcC----CHHHHHHHHHhcCCc
Q 020428          142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------------RPRDPA----KWGEIADIVAALSIP  204 (326)
Q Consensus       142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------------~~~~~~----~~~~i~~i~~~~~iP  204 (326)
                      +++||+||++...  .+..++++.++++|+|+|++|+|+...             .+++++    .++++.++++.+++|
T Consensus       162 ~~iPv~vKl~p~~--~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip  239 (325)
T cd04739         162 VTIPVAVKLSPFF--SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS  239 (325)
T ss_pred             cCCCEEEEcCCCc--cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC
Confidence            9999999998643  368899999999999999999986321             123322    367788898888999


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      ||++|||.|++|+.+++ .+||++||+||+++. +|.++.+
T Consensus       240 Iig~GGI~s~~Da~e~l-~aGA~~Vqv~ta~~~~gp~~~~~  279 (325)
T cd04739         240 LAASGGVHDAEDVVKYL-LAGADVVMTTSALLRHGPDYIGT  279 (325)
T ss_pred             EEEECCCCCHHHHHHHH-HcCCCeeEEehhhhhcCchHHHH
Confidence            99999999999999999 599999999999998 5988775

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=99.94  E-value=5.1e-27  Score=222.27  Aligned_cols=239  Identities=18%  Similarity=0.201  Sum_probs=170.5

Q ss_pred             CCCCCceEEccccCC--------CC-HHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCccee
Q 020428            1 MDYQNKLVLAPMVRV--------GT-LPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVV   67 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~-~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~   67 (326)
                      ++++|||++|||...        ++ .......+++  |+|+++||.+.++......+   ...+.++  +++  ..+.+
T Consensus        11 ~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~---~~~~i~~d~~i~--~~k~l   85 (341)
T PF00724_consen   11 LTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFP---GQPGIWDDEQIP--GLKKL   85 (341)
T ss_dssp             EEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSST---TSEBSSSHHHHH--HHHHH
T ss_pred             EEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEeccccccccccccc---ccchhchhhHHH--HHHHH
Confidence            478999999999753        12 2222333333  79999999998876543221   1222221  211  12224


Q ss_pred             eecccCCCCcEEEEECCCC-------------------------------------------HHHHHHHHHHhhc-CCCE
Q 020428           68 FRTCHQERNHVVFQMGTSD-------------------------------------------AVRALTAAKMVCK-DVAA  103 (326)
Q Consensus        68 ~~~~~~~~~p~~vQl~g~~-------------------------------------------~~~~~~aa~~~~~-~~d~  103 (326)
                      .+.+|..+.++++||++..                                           .++|++||+++++ |||+
T Consensus        86 ~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDG  165 (341)
T PF00724_consen   86 ADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDG  165 (341)
T ss_dssp             HHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred             HHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCe
Confidence            6677888889999996310                                           2578999999987 9999


Q ss_pred             EEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC------CChHHHHHHHHHH
Q 020428          104 IDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL------KSSQDTVELARRI  166 (326)
Q Consensus       104 idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g------~~~~~~~e~a~~l  166 (326)
                      ||||++         +|..|.|+|.||+++.++.+++.+++++||+.+  +.||.+|+...      .+.+++.++++.+
T Consensus       166 VEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~  245 (341)
T PF00724_consen  166 VEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLL  245 (341)
T ss_dssp             EEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHH
T ss_pred             EeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHH
Confidence            999987         799999999999999999999999999999998  67788888872      1246778889999


Q ss_pred             HHcCCcEEEEeeccc------C----CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          167 EKTGVSALAVHGRKV------A----DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~------~----~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.|+|.+.++....      .    .........+....+++.+++|||++|+|.+++.+++++++..||.|.+||+++
T Consensus       246 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~l  325 (341)
T PF00724_consen  246 EELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLL  325 (341)
T ss_dssp             HHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHH
T ss_pred             HHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHH
Confidence            999999886542211      1    011112235677889999999999999999999999999777799999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.|.++
T Consensus       326 adPd~~~k  333 (341)
T PF00724_consen  326 ADPDLPNK  333 (341)
T ss_dssp             H-TTHHHH
T ss_pred             hCchHHHH
Confidence            99999876

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=99.94  E-value=6.6e-26  Score=215.70  Aligned_cols=237  Identities=13%  Similarity=0.137  Sum_probs=178.4

Q ss_pred             CCCCCceEEccccCC---------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVRV---------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~---------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      +++|||+++|||...         |+...+...++.|+|+++||.+.++......+   ...+.++  +++  ..+.+.+
T Consensus        12 ~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~---~~~~l~~d~~i~--~~~~lad   86 (362)
T PRK10605         12 ITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYA---GAPGLHSPEQIA--AWKKITA   86 (362)
T ss_pred             EEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCC---CCCcccCHHHHH--HHHHHHH
Confidence            468999999999741         33455555666699999999988765432211   1111111  111  1122456


Q ss_pred             cccCCCCcEEEEECCC------------------------------------------C------------HHHHHHHHH
Q 020428           70 TCHQERNHVVFQMGTS------------------------------------------D------------AVRALTAAK   95 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~------------------------------------------~------------~~~~~~aa~   95 (326)
                      .+|+.+.++++||++.                                          .            .++|++||+
T Consensus        87 ~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~  166 (362)
T PRK10605         87 GVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAIA  166 (362)
T ss_pred             HHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHH
Confidence            6777788888888420                                          0            257889999


Q ss_pred             Hhhc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecC---------CCC
Q 020428           96 MVCK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRL---------LKS  155 (326)
Q Consensus        96 ~~~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~---------g~~  155 (326)
                      ++.+ |||+||||++         +|..|.|.|+||+++.++.+++.||+++||++++- .|.+|+..         |.+
T Consensus       167 rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~  246 (362)
T PRK10605        167 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN  246 (362)
T ss_pred             HHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence            9987 9999999987         79999999999999999999999999999999842 47777753         245


Q ss_pred             hHH-HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          156 SQD-TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       156 ~~~-~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .++ ++++++.|++.|+|+|+|+......  ..+......++|++.+++||+++|++ |++.+++++++..||.|++||+
T Consensus       247 ~~e~~~~~~~~L~~~giD~i~vs~~~~~~--~~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~  323 (362)
T PRK10605        247 EEADALYLIEQLGKRGIAYLHMSEPDWAG--GEPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRD  323 (362)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeccccccC--CccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHH
Confidence            566 7999999999999999998642111  11223455688899999999999996 8999999997556999999999


Q ss_pred             hhcCccccccc
Q 020428          235 ALWNASIFSSQ  245 (326)
Q Consensus       235 ~l~~P~lf~~~  245 (326)
                      ++.||+|.++.
T Consensus       324 ~iadPd~~~k~  334 (362)
T PRK10605        324 YIANPDLVARL  334 (362)
T ss_pred             hhhCccHHHHH
Confidence            99999999873

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.94  E-value=2.9e-25  Score=209.81  Aligned_cols=235  Identities=18%  Similarity=0.205  Sum_probs=163.6

Q ss_pred             CCCCCceEEccccC-CCCHHHHHHHHHcCCCeEEeCceecccccccccc-----------c---ccccCcccccccCCc-
Q 020428            1 MDYQNKLVLAPMVR-VGTLPFRLLAAQYGADITYGEEIIDHKLLKCERR-----------V---NEYIGSTDFVEKGTD-   64 (326)
Q Consensus         1 l~l~~~iilAPM~g-~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~-----------~---~~~~~~~~~~~~~~~-   64 (326)
                      ++++||+++|-=.- .+...++. +...|+|.+.|..+..++.....+.           .   ...++...+-+...+ 
T Consensus        10 l~l~nPv~~asg~~~~~~~~~~~-~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~n~g~d~   88 (334)
T PRK07565         10 LTLRNPLVASASPLSESVDNVKR-LEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKFYVGPEE   88 (334)
T ss_pred             EecCCCCEecCcCCCCCHHHHHH-HHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhccCcCHHH
Confidence            47899998774211 12234455 5677999998887764322110000           0   000111111111111 


Q ss_pred             --ceeeecccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428           65 --SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN  141 (326)
Q Consensus        65 --~~~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~  141 (326)
                        +.+.......+.|+++||+|.+++++.++++.+++ |+|+|+||++||....  +..|..   .++.+.++++++++.
T Consensus        89 ~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~--~~~g~~---~~~~~~eil~~v~~~  163 (334)
T PRK07565         89 YLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP--DISGAE---VEQRYLDILRAVKSA  163 (334)
T ss_pred             HHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--CCcccc---HHHHHHHHHHHHHhc
Confidence              11111112224699999999999999999999987 8999999999976532  223432   346688999999999


Q ss_pred             ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------------CCCCcC----CHHHHHHHHHhcCCc
Q 020428          142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------------RPRDPA----KWGEIADIVAALSIP  204 (326)
Q Consensus       142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------------~~~~~~----~~~~i~~i~~~~~iP  204 (326)
                      +++||++|++.+.  .+..++++.++++|+|+|++|+|....             .+++++    .++.+.++++.+++|
T Consensus       164 ~~iPV~vKl~p~~--~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ip  241 (334)
T PRK07565        164 VSIPVAVKLSPYF--SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGAD  241 (334)
T ss_pred             cCCcEEEEeCCCc--hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCC
Confidence            9999999998643  367899999999999999999986421             122322    367788888889999


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      ||++|||+|++|+.+++ .+||++||+||+++. +|.++.+
T Consensus       242 Iig~GGI~s~~Da~e~l-~aGA~~V~v~t~~~~~g~~~~~~  281 (334)
T PRK07565        242 LAATTGVHDAEDVIKML-LAGADVVMIASALLRHGPDYIGT  281 (334)
T ss_pred             EEEECCCCCHHHHHHHH-HcCCCceeeehHHhhhCcHHHHH
Confidence            99999999999999999 599999999999998 4876554

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.93  E-value=1e-24  Score=203.12  Aligned_cols=190  Identities=23%  Similarity=0.188  Sum_probs=153.0

Q ss_pred             CCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCC
Q 020428            3 YQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERN   76 (326)
Q Consensus         3 l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (326)
                      +..|+++|||++.+      +..++..|.++|...+++.+.+.. .        .      .        +..   ....
T Consensus        63 ~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~-~--------~------~--------i~~---~~~~  116 (299)
T cd02809          63 LAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTS-L--------E------E--------VAA---AAPG  116 (299)
T ss_pred             cCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCC-H--------H------H--------HHH---hcCC
Confidence            56799999998765      568999999999988877765321 0        0      0        011   1115


Q ss_pred             cEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           77 HVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      |+.+||++. +++...++++.+.+ +++.|++|++||.+..+             ...++++++++.+++||++|..   
T Consensus       117 ~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v---  180 (299)
T cd02809         117 PRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGI---  180 (299)
T ss_pred             CeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeec---
Confidence            899999876 89988888888776 99999999999986433             2336788888888999999964   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                         .+.+.++.++++|+|+|+++++...+.+.+++.|+.+.++++.+  ++|||++|||+|+.|+.+++ ..|||+||+|
T Consensus       181 ---~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal-~lGAd~V~ig  256 (299)
T cd02809         181 ---LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL-ALGADAVLIG  256 (299)
T ss_pred             ---CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEc
Confidence               23466899999999999998877666777889999999999887  49999999999999999999 5999999999


Q ss_pred             cchhcC
Q 020428          233 RGALWN  238 (326)
Q Consensus       233 r~~l~~  238 (326)
                      |+++..
T Consensus       257 ~~~l~~  262 (299)
T cd02809         257 RPFLYG  262 (299)
T ss_pred             HHHHHH
Confidence            965543

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PLN02411 12-oxophytodienoate reductase

Probab=99.92  E-value=4.2e-24  Score=205.21  Aligned_cols=239  Identities=13%  Similarity=0.091  Sum_probs=170.4

Q ss_pred             CCCCCceEEccccCC-------CCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCccc--ccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRV-------GTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~-------t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   70 (326)
                      +++||||++|||...       |+.......++. |.|+++||.+.++......+   ...+.++  +++  ..+.+.+.
T Consensus        21 ~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~---~~~gi~~d~~i~--~~~~l~~a   95 (391)
T PLN02411         21 FDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFP---HVPGIYSDEQVE--AWKKVVDA   95 (391)
T ss_pred             EEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCC---CCCccCCHHHHH--HHHHHHHH
Confidence            468999999999752       334444444433 44999999888765432111   1122211  111  11224566


Q ss_pred             ccCCCCcEEEEECC--C--------------------------------------C------------HHHHHHHHHHhh
Q 020428           71 CHQERNHVVFQMGT--S--------------------------------------D------------AVRALTAAKMVC   98 (326)
Q Consensus        71 ~~~~~~p~~vQl~g--~--------------------------------------~------------~~~~~~aa~~~~   98 (326)
                      +|+.+.++++||+.  .                                      .            .++|++||+++.
T Consensus        96 vH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~  175 (391)
T PLN02411         96 VHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNAI  175 (391)
T ss_pred             HHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence            67777788888731  0                                      0            257889999998


Q ss_pred             c-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCCC---------ChHH
Q 020428           99 K-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLLK---------SSQD  158 (326)
Q Consensus        99 ~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g~---------~~~~  158 (326)
                      + |||+||||++         +|..|.|+|+||+++.++.+++.||+++||++++. .|.+|+....         ..++
T Consensus       176 ~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~  255 (391)
T PLN02411        176 RAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNL  255 (391)
T ss_pred             HcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhh
Confidence            7 9999999987         79999999999999999999999999999999842 4777877411         1345


Q ss_pred             HHHHHHHHHHc------CCcEEEEeecccCC---CC---CCcC-C-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          159 TVELARRIEKT------GVSALAVHGRKVAD---RP---RDPA-K-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       159 ~~e~a~~l~~~------G~d~i~vh~r~~~~---~~---~~~~-~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      ..++++.+++.      |+|+|+|.......   ..   .++. . ..+.+++++.+++|||++|+| +.+++++++++.
T Consensus       256 ~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g  334 (391)
T PLN02411        256 GLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQG  334 (391)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcC
Confidence            67788888764      59999998643211   00   0111 1 245578999999999999999 579999999654


Q ss_pred             CCcEEEeccchhcCccccccc
Q 020428          225 GASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       225 Gad~VmiGr~~l~~P~lf~~~  245 (326)
                      .||.|.+||+++.||.|.++.
T Consensus       335 ~aDlV~~gR~~iadPdl~~k~  355 (391)
T PLN02411        335 DADLVSYGRLFISNPDLVLRF  355 (391)
T ss_pred             CCCEEEECHHHHhCccHHHHH
Confidence            599999999999999998873

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=99.91  E-value=3e-24  Score=203.00  Aligned_cols=175  Identities=19%  Similarity=0.349  Sum_probs=146.8

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      ++++|+++|||+++||.+||.+|+++|+ ++     ++++.+.+.                          .+...|+.+
T Consensus        42 ~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~--------------------------~~~~~~~~~   90 (369)
T TIGR01304        42 RFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGR--------------------------HEDPDPAIA   90 (369)
T ss_pred             ecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhc--------------------------CCCHHHHHH
Confidence            5788999999999999999999999998 77     666665430                          011136779


Q ss_pred             EECC--CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428           81 QMGT--SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        81 Ql~g--~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~  157 (326)
                      ||+|  ++|+. .++++.+++ +++.                      .+|+++.+++++++++.   |++|+|++  +.
T Consensus        91 QI~g~~~~~~~-a~aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~--~~  142 (369)
T TIGR01304        91 KIAEAYEEGDQ-AAATRLLQELHAAP----------------------LKPELLGERIAEVRDSG---VITAVRVS--PQ  142 (369)
T ss_pred             HHhhcCCChHH-HHHHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEEEEecC--Cc
Confidence            9998  56666 889988876 4443                      37999999999999973   99999984  35


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCC-CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~-~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.++++.+.++|+|.|++|+|+..+.| ++..+|..+.++++..++|||+ |+|.|.+++.+++ ++|||+||+|++..
T Consensus       143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~-~aGaDgV~~G~gg~  220 (369)
T TIGR01304       143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLM-RTGAAGVIVGPGGA  220 (369)
T ss_pred             CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCCC
Confidence            7889999999999999999999999888 5567899999999999999998 9999999999999 49999999999875


Q ss_pred             c
Q 020428          237 W  237 (326)
Q Consensus       237 ~  237 (326)
                      .
T Consensus       221 ~  221 (369)
T TIGR01304       221 N  221 (369)
T ss_pred             c
Confidence            4

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=99.91  E-value=5.4e-23  Score=195.54  Aligned_cols=239  Identities=15%  Similarity=0.155  Sum_probs=167.0

Q ss_pred             CCCCCceEEccccCCCCHHH-HHHHHHcCCCeEEeCceeccc--cccccccccc-c---c-----CcccccccC------
Q 020428            1 MDYQNKLVLAPMVRVGTLPF-RLLAAQYGADITYGEEIIDHK--LLKCERRVNE-Y---I-----GSTDFVEKG------   62 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~f-r~~~~~~G~~l~~te~i~~~~--l~~~~~~~~~-~---~-----~~~~~~~~~------   62 (326)
                      ++++||+++|-=.--++... +++. ..|+|.++|..++.++  .....+.... .   +     +...+.+..      
T Consensus        18 l~l~NP~i~ASgp~t~~~e~~~~~~-~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~~~s~~g   96 (385)
T PLN02495         18 LKMPNPFVIGSGPPGTNYTVMKRAF-DEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIELISDRP   96 (385)
T ss_pred             EEcCCCcEeCCccCCCCHHHHHHHH-hcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCcccccccC
Confidence            47899999984222334455 4544 4599999888777433  1111111100 0   0     000111110      


Q ss_pred             Ccc---eeeecccCC-CCcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHH
Q 020428           63 TDS---VVFRTCHQE-RNHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILT  136 (326)
Q Consensus        63 ~~~---~~~~~~~~~-~~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~  136 (326)
                      .+.   .+.+..++. ..|++++|.+ .+++++.+.++.+++ |+|+||||++||+....+ +.|..+.++|+.+.++++
T Consensus        97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r-~~g~~~gq~~e~~~~i~~  175 (385)
T PLN02495         97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPER-KMGAAVGQDCDLLEEVCG  175 (385)
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcC-ccchhhccCHHHHHHHHH
Confidence            011   111111222 3599999976 899999999999987 899999999999964333 468889999999999999


Q ss_pred             HHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC---------------------CCCCCcC----CH
Q 020428          137 MLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA---------------------DRPRDPA----KW  191 (326)
Q Consensus       137 ~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------~~~~~~~----~~  191 (326)
                      ++++.+.+||+||+..  +..+..++++.++++|+|+|++.++...                     +.++|++    .+
T Consensus       176 ~Vk~~~~iPv~vKLsP--n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl  253 (385)
T PLN02495        176 WINAKATVPVWAKMTP--NITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIAL  253 (385)
T ss_pred             HHHHhhcCceEEEeCC--ChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHH
Confidence            9999999999999984  4456889999999999999998655331                     1112221    12


Q ss_pred             HHHHHHHHhc------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428          192 GEIADIVAAL------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS  244 (326)
Q Consensus       192 ~~i~~i~~~~------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~  244 (326)
                      ..+.++++.+      ++|||+.|||.|.+|+.+++ ..||+.||++++++.+ |.++.+
T Consensus       254 ~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i-~aGAs~VQv~Ta~~~~Gp~vi~~  312 (385)
T PLN02495        254 AKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFI-LLGADTVQVCTGVMMHGYPLVKN  312 (385)
T ss_pred             HHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHH-HhCCCceeEeeeeeecCcHHHHH
Confidence            3344566655      49999999999999999999 7999999999999987 988776

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=99.91  E-value=6.6e-23  Score=191.46  Aligned_cols=237  Identities=16%  Similarity=0.099  Sum_probs=164.0

Q ss_pred             CCCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceeccccc-cccccccc----ccCcccccccCCcce---eeecc
Q 020428            1 MDYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLL-KCERRVNE----YIGSTDFVEKGTDSV---VFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~   71 (326)
                      ++++||+++|-=..-.+ ..++. +...|+|.+.|..+..++-. ...+....    .++...+-+...+.+   +.+..
T Consensus         9 l~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~   87 (310)
T PRK02506          9 FKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQ   87 (310)
T ss_pred             EECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHH
Confidence            47899999986333223 44554 66789999999988876422 11111100    011111111111110   11111


Q ss_pred             cC-CCCcEEEEECCCCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           72 HQ-ERNHVVFQMGTSDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        72 ~~-~~~p~~vQl~g~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      .. .+.|++++|.|.+++++.+.++.+++ + +|+||||++||+..     .+..+-.+|+.+.++++++++.+.+||++
T Consensus        88 ~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-----~~~~~g~d~~~~~~i~~~v~~~~~~Pv~v  162 (310)
T PRK02506         88 KKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-----GKPQIAYDFETTEQILEEVFTYFTKPLGV  162 (310)
T ss_pred             hhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-----CccccccCHHHHHHHHHHHHHhcCCccEE
Confidence            11 23699999999999999999999876 6 89999999999852     24455668999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcCCcEEEEeec----------cc------C---CCCCCcC----CHHHHHHHHHhc--CC
Q 020428          149 KIRLLKSSQDTVELARRIEKTGVSALAVHGR----------KV------A---DRPRDPA----KWGEIADIVAAL--SI  203 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r----------~~------~---~~~~~~~----~~~~i~~i~~~~--~i  203 (326)
                      |++...+..+..+.+..+.+.|++.|....+          +.      .   +..+|++    .+..+.++++.+  ++
T Consensus       163 Klsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i  242 (310)
T PRK02506        163 KLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSI  242 (310)
T ss_pred             ecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCC
Confidence            9998665555555555566677777654331          00      0   1123333    356677888877  69


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      |||++|||.|.+|+.+++ ..||++||++++++. +|.+|++
T Consensus       243 pIig~GGI~s~~da~e~i-~aGA~~Vqv~ta~~~~gp~~~~~  283 (310)
T PRK02506        243 QIIGTGGVKTGRDAFEHI-LCGASMVQVGTALHKEGPAVFER  283 (310)
T ss_pred             CEEEECCCCCHHHHHHHH-HcCCCHHhhhHHHHHhChHHHHH
Confidence            999999999999999999 799999999999997 7998886

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=99.90  E-value=9.6e-23  Score=192.04  Aligned_cols=235  Identities=18%  Similarity=0.228  Sum_probs=167.4

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccc-ccccccccc------ccCcccccccCCccee--eecc
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKL-LKCERRVNE------YIGSTDFVEKGTDSVV--FRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~   71 (326)
                      ++++||+++|-=..-+....+.+ ...|+|.+.+..++.++- ....+....      .++...+-+...+.++  ++. 
T Consensus        53 l~l~NPi~lAsG~~~~~~~~~~~-~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~-  130 (335)
T TIGR01036        53 LKFPNPLGLAAGFDKDGEAIDAL-GAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKR-  130 (335)
T ss_pred             EECCCCcEeCCccCCCHHHHHHH-HhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhh-
Confidence            46899999964222112234444 455999999998886532 121111110      1111111111101110  111 


Q ss_pred             cCCCCcEEEEECCC-------CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-
Q 020428           72 HQERNHVVFQMGTS-------DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-  143 (326)
Q Consensus        72 ~~~~~p~~vQl~g~-------~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-  143 (326)
                      ...+.|++++++++       ..+++.+.++.+.+.+|+||||++||+..      |...+.+++.+.++++++++.++ 
T Consensus       131 ~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~  204 (335)
T TIGR01036       131 ARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDG  204 (335)
T ss_pred             ccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHh
Confidence            12346899999877       47899999999877789999999999862      34556899999999999998876 


Q ss_pred             ------CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc-------------CCCCCCcC----CHHHHHHHHHh
Q 020428          144 ------VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV-------------ADRPRDPA----KWGEIADIVAA  200 (326)
Q Consensus       144 ------~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~-------------~~~~~~~~----~~~~i~~i~~~  200 (326)
                            +||.+|+....+.++..++++.++++|+|+|++.+.+.             .+.++|++    .++++.++++.
T Consensus       205 ~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~  284 (335)
T TIGR01036       205 LRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAE  284 (335)
T ss_pred             hhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHH
Confidence                  99999999877777899999999999999999876542             12234433    35677788877


Q ss_pred             c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      +  ++|||++|||.|++|+.+++ ..||+.|++||+++. +|.++.+
T Consensus       285 ~~~~ipiig~GGI~~~~da~e~l-~aGA~~Vqv~ta~~~~Gp~~~~~  330 (335)
T TIGR01036       285 LQGRLPIIGVGGISSAQDALEKI-RAGASLLQIYSGFIYWGPPLVKE  330 (335)
T ss_pred             hCCCCCEEEECCCCCHHHHHHHH-HcCCcHHHhhHHHHHhCchHHHH
Confidence            7  69999999999999999999 699999999999988 6998765

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=99.89  E-value=5.8e-22  Score=182.46  Aligned_cols=236  Identities=22%  Similarity=0.290  Sum_probs=170.7

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-cccccc------ccccCcccccccCCccee--eecc
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRV------NEYIGSTDFVEKGTDSVV--FRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~   71 (326)
                      ++++||+++|-=...++...-......|+|.+.+..+..++-. ...+..      ...++..-|-+......+  +...
T Consensus         9 l~f~NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~~~l~~~   88 (310)
T COG0167           9 LKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFLEELKLA   88 (310)
T ss_pred             eecCCCCeEcccCCccCHHHHHHHHhcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHHHHHHhh
Confidence            4789999998655434444433334447999988888776421 111110      000111111111111100  0111


Q ss_pred             cC----CCCcEEEEECCCCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc
Q 020428           72 HQ----ERNHVVFQMGTSDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP  145 (326)
Q Consensus        72 ~~----~~~p~~vQl~g~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p  145 (326)
                      ..    .+.+++.+..+...+.+.+.+..+++ + +|+|+||.+||+.+    + |..+-.+|+.+.++++++++.+.+|
T Consensus        89 ~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g-~~~l~~~~e~l~~l~~~vk~~~~~P  163 (310)
T COG0167          89 KYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G-GRALGQDPELLEKLLEAVKAATKVP  163 (310)
T ss_pred             hhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C-hhhhccCHHHHHHHHHHHHhcccCc
Confidence            11    23457777788888999998888876 5 79999999999963    3 7888889999999999999999999


Q ss_pred             EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-----------------CCCCCc----CCHHHHHHHHHhcC--
Q 020428          146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-----------------DRPRDP----AKWGEIADIVAALS--  202 (326)
Q Consensus       146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------~~~~~~----~~~~~i~~i~~~~~--  202 (326)
                      |.||+..  +..+..++|+.++++|+|+|++.+-+..                 +..+|+    ...+++++++++++  
T Consensus       164 v~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~  241 (310)
T COG0167         164 VFVKLAP--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGD  241 (310)
T ss_pred             eEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCC
Confidence            9999985  7889999999999999999998753221                 223343    34678899999876  


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS  244 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~  244 (326)
                      +|||+.|||.|.+|+.+.+ ..||+.||||++++.+ |++|.+
T Consensus       242 ipIIGvGGI~s~~DA~E~i-~aGA~~vQv~Tal~~~Gp~i~~~  283 (310)
T COG0167         242 IPIIGVGGIETGEDALEFI-LAGASAVQVGTALIYKGPGIVKE  283 (310)
T ss_pred             CcEEEecCcCcHHHHHHHH-HcCCchheeeeeeeeeCchHHHH
Confidence            9999999999999999999 7999999999999986 999886

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=99.87  E-value=1.1e-21  Score=182.47  Aligned_cols=236  Identities=17%  Similarity=0.210  Sum_probs=159.0

Q ss_pred             CCCCCceEEccccCC-CCHHHHHHHHHcCCCeEEeCceecccccc-ccccccc------ccCcccccccCCcce---eee
Q 020428            1 MDYQNKLVLAPMVRV-GTLPFRLLAAQYGADITYGEEIIDHKLLK-CERRVNE------YIGSTDFVEKGTDSV---VFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~-t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~~~------~~~~~~~~~~~~~~~---~~~   69 (326)
                      ++++||+++|.  |. ++...-..+.+.|+|.+.+..+..++... ..+....      .+....+.+.....+   +..
T Consensus         9 l~l~nPi~~as--G~~~~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~~~~   86 (295)
T PF01180_consen    9 LTLKNPIGLAS--GLDKNGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLERLRP   86 (295)
T ss_dssp             EEESSSEEE-T--TSSTSSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHHHHH
T ss_pred             EEcCCCcEECC--cCCCCchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHHHHH
Confidence            46899999984  43 33333334446699999998888765421 1111100      011111111110000   011


Q ss_pred             cccC----CCCcEEEEECCCC---HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428           70 TCHQ----ERNHVVFQMGTSD---AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL  142 (326)
Q Consensus        70 ~~~~----~~~p~~vQl~g~~---~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~  142 (326)
                      ...+    ...|+++++.|.+   .+++.+.++.++.++|++|||++||+..     .+..+..+++...++++.+++..
T Consensus        87 ~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~  161 (295)
T PF01180_consen   87 ILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAV  161 (295)
T ss_dssp             THHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccccceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhcc
Confidence            1111    2458999999998   8999999999988999999999999874     34556778899999999999988


Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-----------------CCCCCcC----CHHHHHHHHHhc
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-----------------DRPRDPA----KWGEIADIVAAL  201 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------~~~~~~~----~~~~i~~i~~~~  201 (326)
                      ++||.||+....+.....+.+..+.+.|+++|++.++...                 +..+|++    .+.+++++++.+
T Consensus       162 ~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~  241 (295)
T PF01180_consen  162 DIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKAL  241 (295)
T ss_dssp             SSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcc
Confidence            9999999997655555677777777999999995433210                 1123333    466788899988


Q ss_pred             C--CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch-hcCcccccc
Q 020428          202 S--IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA-LWNASIFSS  244 (326)
Q Consensus       202 ~--iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~-l~~P~lf~~  244 (326)
                      +  +|||++|||.|++|+.+++ ..||+.||+++++ +.+|+++++
T Consensus       242 ~~~i~Iig~GGI~s~~da~e~l-~aGA~~Vqv~Sal~~~Gp~~~~~  286 (295)
T PF01180_consen  242 GQDIPIIGVGGIHSGEDAIEFL-MAGASAVQVCSALIYRGPGVIRR  286 (295)
T ss_dssp             TTSSEEEEESS--SHHHHHHHH-HHTESEEEESHHHHHHGTTHHHH
T ss_pred             ccceEEEEeCCcCCHHHHHHHH-HhCCCHheechhhhhcCcHHHHH
Confidence            7  9999999999999999999 7999999999999 559998876

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>PLN02826 dihydroorotate dehydrogenase

Probab=99.86  E-value=2e-20  Score=179.63  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=134.4

Q ss_pred             cEEEEECCC-----CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc---------c
Q 020428           77 HVVFQMGTS-----DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN---------L  142 (326)
Q Consensus        77 p~~vQl~g~-----~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~---------~  142 (326)
                      |++++|+++     .+++|.+.++.+.+.+|+|+||.+||+..      |...+.+++.+.++++++++.         .
T Consensus       188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~  261 (409)
T PLN02826        188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGEEG  261 (409)
T ss_pred             eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhcccc
Confidence            899999887     57899999999977899999999999862      335567899999999998643         3


Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC--------------CCCCCcC----CHHHHHHHHHhc--C
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA--------------DRPRDPA----KWGEIADIVAAL--S  202 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--------------~~~~~~~----~~~~i~~i~~~~--~  202 (326)
                      .+||.||+....+.++..++++.+.++|+|+|++.+.+..              +..+|++    ..+.+.++++.+  +
T Consensus       262 ~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~  341 (409)
T PLN02826        262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGK  341 (409)
T ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCC
Confidence            6899999987777778999999999999999999874321              2234443    466788888887  7


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      +|||+.|||.|.+|+.+++ ..||+.|+++|+++. +|+++.+
T Consensus       342 ipIIgvGGI~sg~Da~e~i-~AGAs~VQv~Ta~~~~Gp~~i~~  383 (409)
T PLN02826        342 IPLVGCGGVSSGEDAYKKI-RAGASLVQLYTAFAYEGPALIPR  383 (409)
T ss_pred             CcEEEECCCCCHHHHHHHH-HhCCCeeeecHHHHhcCHHHHHH
Confidence            9999999999999999999 699999999999987 5877665

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=99.81  E-value=4.3e-19  Score=167.40  Aligned_cols=210  Identities=21%  Similarity=0.234  Sum_probs=145.8

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      +++.|+++|||+|.+      +..+...|+++|..+..+..-.  .+..  +   ....  +|      . ..+.. ...
T Consensus        51 ~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~--~~~~--~---~~~~--~~------~-~vr~~-~~~  113 (333)
T TIGR02151        51 RLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRA--ALKD--P---ETAD--TF------E-VVREE-APN  113 (333)
T ss_pred             cccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchh--hccC--h---hhHh--HH------H-HHHHh-CCC
Confidence            578999999999999      6777779999997776543211  0100  0   0000  00      0 01111 234


Q ss_pred             CcEEEEECCCC-----HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428           76 NHVVFQMGTSD-----AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~g~~-----~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      .|++.+|++..     ++++.++.+.+  ++|+++||++|++......+..     +.+...+.++++++.+++||.+|.
T Consensus       114 ~p~i~nl~~~~~~~~~~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~  186 (333)
T TIGR02151       114 GPLIANIGAPQLVEGGPEEAQEAIDMI--EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKE  186 (333)
T ss_pred             CcEEeecCchhhccccHHHHHHHHHHh--cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEe
Confidence            68999987532     44566666655  5788999999988755544432     235577889999999999999997


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCC----------C-C--CCcCCH-----HHHHHHHH-hcCCcEEEeCCC
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVAD----------R-P--RDPAKW-----GEIADIVA-ALSIPVIANGDV  211 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~----------~-~--~~~~~~-----~~i~~i~~-~~~iPVi~nGgI  211 (326)
                      . |.  ..+.+.++.++++|+|+|+|+|+....          . +  ....+|     +.+.++++ .+++|||++|||
T Consensus       187 ~-g~--g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI  263 (333)
T TIGR02151       187 V-GF--GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGL  263 (333)
T ss_pred             c-CC--CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCC
Confidence            5 32  245789999999999999999974321          0 0  111234     45566666 568999999999


Q ss_pred             CCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          212 FEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       212 ~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +|++|+.+++ ..|||+|++||++|..-
T Consensus       264 ~~~~di~kaL-alGAd~V~igr~~L~~~  290 (333)
T TIGR02151       264 RTGLDVAKAI-ALGADAVGMARPFLKAA  290 (333)
T ss_pred             CCHHHHHHHH-HhCCCeehhhHHHHHHH
Confidence            9999999999 58999999999988543

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=99.81  E-value=4.7e-19  Score=165.20  Aligned_cols=188  Identities=20%  Similarity=0.220  Sum_probs=141.0

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEE
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVV   79 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   79 (326)
                      +.++.||++|||.++|+..+...+.+.|. |++-....+++.+...                     +-......+.|+.
T Consensus         8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~---------------------i~~~~~~t~~pfg   66 (307)
T TIGR03151         8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKE---------------------IRKVKELTDKPFG   66 (307)
T ss_pred             hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHH---------------------HHHHHHhcCCCcE
Confidence            46789999999999999999999999985 7776554444433211                     0011112245999


Q ss_pred             EEECCCCHHHHHHHHH-HhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428           80 FQMGTSDAVRALTAAK-MVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD  158 (326)
Q Consensus        80 vQl~g~~~~~~~~aa~-~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~  158 (326)
                      ++++...|.. .+..+ .+..+++.|.++.|.|.                    ++++.+++. +++|...+       .
T Consensus        67 vn~~~~~~~~-~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v-------~  117 (307)
T TIGR03151        67 VNIMLLSPFV-DELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVV-------A  117 (307)
T ss_pred             EeeecCCCCH-HHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEc-------C
Confidence            9997654433 23333 33448899988777652                    356677665 77777666       3


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.+.++.++++|+|.|++||+...+......+|.+++++++.+++|||++|||.+++++.+++ ..|||+||+|+.++..
T Consensus       118 s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al-~~GA~gV~iGt~f~~t  196 (307)
T TIGR03151       118 SVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF-ALGAEAVQMGTRFLCA  196 (307)
T ss_pred             CHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCCEeecchHHhcc
Confidence            467789999999999999999777664444589999999999999999999999999999999 4999999999998864


Q ss_pred             c
Q 020428          239 A  239 (326)
Q Consensus       239 P  239 (326)
                      +
T Consensus       197 ~  197 (307)
T TIGR03151       197 K  197 (307)
T ss_pred             c
Confidence            4

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=99.80  E-value=2.8e-18  Score=162.78  Aligned_cols=209  Identities=20%  Similarity=0.217  Sum_probs=146.8

Q ss_pred             CCCCceEEccccCCCC------HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVGT------LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~------~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      +++.|+++|||+|.|+      ..+..+|+++|..+..+.+-..  +..      ... ...|      + ..+.. ..+
T Consensus        58 ~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~--~~~------~~~-~~~~------~-~vr~~-~p~  120 (352)
T PRK05437         58 KLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAA--LKD------PEL-ADSF------S-VVRKV-APD  120 (352)
T ss_pred             eecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhh--ccC------hhh-HHHH------H-HHHHH-CCC
Confidence            4678999999999987      5666689999987776654211  000      000 0000      0 00111 113


Q ss_pred             CcEEEEECCC-----CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428           76 NHVVFQMGTS-----DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~g~-----~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      .|++++|+..     +++.+.++.+.+  ++|+++||++||+.-+...+.     .+.+.+.+.++++++.+++||.+|.
T Consensus       121 ~p~~aNl~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~  193 (352)
T PRK05437        121 GLLFANLGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKE  193 (352)
T ss_pred             ceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEe
Confidence            5899988753     457777776666  578899999998765443332     3455677899999999999999998


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CC------C-----CcCCHHHHHHHHHh-cCCcEEEeCCC
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RP------R-----DPAKWGEIADIVAA-LSIPVIANGDV  211 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~------~-----~~~~~~~i~~i~~~-~~iPVi~nGgI  211 (326)
                      .- .  ..+.+.++.++++|+|+|+|+|+....       +.      .     +.+..+.+.++++. .++|||++|||
T Consensus       194 ~g-~--g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI  270 (352)
T PRK05437        194 VG-F--GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGI  270 (352)
T ss_pred             CC-C--CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCC
Confidence            63 2  234688999999999999999874210       00      0     22234567777877 58999999999


Q ss_pred             CCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          212 FEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       212 ~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +|+.|+.+++ ..|||+|++||+++..
T Consensus       271 ~~~~dv~k~l-~~GAd~v~ig~~~l~~  296 (352)
T PRK05437        271 RNGLDIAKAL-ALGADAVGMAGPFLKA  296 (352)
T ss_pred             CCHHHHHHHH-HcCCCEEEEhHHHHHH
Confidence            9999999999 5899999999998864

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.79  E-value=1e-18  Score=165.85  Aligned_cols=171  Identities=19%  Similarity=0.325  Sum_probs=135.6

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++.|+++|||.++|+.+|+..++++|+ +++.++.+..                               ......|+..
T Consensus        45 ~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~-------------------------------~~~~~e~l~~   93 (368)
T PRK08649         45 RFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWT-------------------------------RYEDPEPILD   93 (368)
T ss_pred             eccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccc-------------------------------cCCCHHHHHH
Confidence            5788999999999999999999999997 8887442220                               0011125777


Q ss_pred             EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHH
Q 020428           81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT  159 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~  159 (326)
                      ||++.++.   ++++.+++ +.+        |              .+|+++.+++++++++ +  |++|+|+  ++.+.
T Consensus        94 qi~~~~~~---~~~~~~~~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~--~~~~~  143 (368)
T PRK08649         94 EIASLGKD---EATRLMQELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVSL--SPQRA  143 (368)
T ss_pred             HHHhcCcH---HHHHHHHHhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEec--CCcCH
Confidence            88877773   34444443 211        2              4699999999999986 4  6667765  34567


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .++++.+.++|+|.|++|+||.++.|.+.. +|..+.++++..++|||+ |+|.|.+++++++ ++|||+||+|++-
T Consensus       144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~-~aGAD~V~VG~G~  218 (368)
T PRK08649        144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLM-RTGAAGVLVGIGP  218 (368)
T ss_pred             HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCC
Confidence            899999999999999999999999987776 799888888888999999 9999999999999 5999999999874

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=99.78  E-value=6.4e-18  Score=159.03  Aligned_cols=205  Identities=21%  Similarity=0.222  Sum_probs=141.4

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeC----ceecccccccccccccccCcccccccCCcceeeecc
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGE----EIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC   71 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te----~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (326)
                      +++.|+++|||+|.+      +..+...+++.|.......    +..++.. .            +|      + ..+..
T Consensus        50 ~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~-~------------~~------~-~vr~~  109 (326)
T cd02811          50 RLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELA-E------------SF------T-VVREA  109 (326)
T ss_pred             eecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhh-h------------HH------H-HHHHh
Confidence            578999999999987      6788888888885433221    1111110 0            00      0 01111


Q ss_pred             cCCCCcEEEEECCC-----CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           72 HQERNHVVFQMGTS-----DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        72 ~~~~~p~~vQl~g~-----~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      . ...|++++++..     +++.+.++.+.+  ++|+++||++||+......+.     .+.+...+.++.+++.+++||
T Consensus       110 ~-~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPV  181 (326)
T cd02811         110 P-PNGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPV  181 (326)
T ss_pred             C-CCceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCE
Confidence            1 225888888753     567777776666  578899999887754333321     345567788999999999999


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC---------CCC------CCcCC-----HHHHHHHHHhc-CCcE
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA---------DRP------RDPAK-----WGEIADIVAAL-SIPV  205 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------~~~------~~~~~-----~~~i~~i~~~~-~iPV  205 (326)
                      .+|..-.   ..+.+.++.++++|+|+|+|+|+...         +..      ....+     .+.+.++++.+ ++||
T Consensus       182 ivK~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipI  258 (326)
T cd02811         182 IVKEVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPL  258 (326)
T ss_pred             EEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcE
Confidence            9998531   23468899999999999999986221         000      00112     34667777777 8999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      |++|||+|..|+.+++ ..|||+|++||++|..
T Consensus       259 iasGGIr~~~dv~kal-~lGAd~V~i~~~~L~~  290 (326)
T cd02811         259 IASGGIRNGLDIAKAL-ALGADLVGMAGPFLKA  290 (326)
T ss_pred             EEECCCCCHHHHHHHH-HhCCCEEEEcHHHHHH
Confidence            9999999999999999 5899999999998753

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=99.77  E-value=7.7e-18  Score=151.55  Aligned_cols=188  Identities=19%  Similarity=0.242  Sum_probs=136.5

Q ss_pred             CCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE
Q 020428            4 QNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM   82 (326)
Q Consensus         4 ~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl   82 (326)
                      ++|+++|||+|+|+..++..+.++|+ +++.+++++.+.+.+..+.                  +.   +..+.|+.+|+
T Consensus         2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~------------------i~---~~~~~~~~v~~   60 (236)
T cd04730           2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRK------------------IR---ALTDKPFGVNL   60 (236)
T ss_pred             CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHH------------------HH---HhcCCCeEEeE
Confidence            57999999999999999999999986 8887888876655331111                  00   11124788999


Q ss_pred             CCCCH-HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHH
Q 020428           83 GTSDA-VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        83 ~g~~~-~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~  160 (326)
                      +.+++ ....+.++.+.+ |+|+|.++.++|                    .++++.+++ .++++.+++.       +.
T Consensus        61 i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~~--------------------~~~~~~~~~-~~i~~i~~v~-------~~  112 (236)
T cd04730          61 LVPSSNPDFEALLEVALEEGVPVVSFSFGPP--------------------AEVVERLKA-AGIKVIPTVT-------SV  112 (236)
T ss_pred             ecCCCCcCHHHHHHHHHhCCCCEEEEcCCCC--------------------HHHHHHHHH-cCCEEEEeCC-------CH
Confidence            98864 344444555555 899999987632                    123444443 3677777663       23


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCC--cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRD--PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.++.+.+.|+|+|.++++...+....  ...++.++++++.+++||+++|||.+++++.+++ ..|+|+|++|++++..
T Consensus       113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l-~~GadgV~vgS~l~~~  191 (236)
T cd04730         113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAAL-ALGADGVQMGTRFLAT  191 (236)
T ss_pred             HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCcEEEEchhhhcC
Confidence            556778889999999998743322111  2458899999998899999999999999999999 5999999999998877


Q ss_pred             ccc
Q 020428          239 ASI  241 (326)
Q Consensus       239 P~l  241 (326)
                      +..
T Consensus       192 ~e~  194 (236)
T cd04730         192 EES  194 (236)
T ss_pred             ccc
Confidence            644

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=99.76  E-value=3.2e-18  Score=154.64  Aligned_cols=119  Identities=21%  Similarity=0.321  Sum_probs=103.8

Q ss_pred             cccccccCChHHHHHHHHHHhhcc--cCcE---EEEecCCCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH
Q 020428          119 GMGAALLSKPELIHDILTMLKRNL--DVPV---TCKIRLLKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW  191 (326)
Q Consensus       119 ~~G~~l~~~p~~~~~iv~~v~~~~--~~pv---~vK~r~g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~  191 (326)
                      ..|++++++|+++.++++++.+++  ++++   .+|++ ||+  ..++.++++.+++.|++.|++|+|++++.++|+ ||
T Consensus       102 viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~  179 (241)
T PRK14024        102 NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NL  179 (241)
T ss_pred             EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CH
Confidence            467899999999999999997765  3344   45553 664  346789999999999999999999999999887 99


Q ss_pred             HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH--hcCCcEEEeccchhcCc
Q 020428          192 GEIADIVAALSIPVIANGDVFEYDDFQRIKT--AAGASSVMAARGALWNA  239 (326)
Q Consensus       192 ~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~--~~Gad~VmiGr~~l~~P  239 (326)
                      +.++++++.+++|||+||||+|.+|+.++.+  .+||||||+||+++.++
T Consensus       180 ~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~  229 (241)
T PRK14024        180 ELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA  229 (241)
T ss_pred             HHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence            9999999999999999999999999999863  36999999999999876

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=99.72  E-value=3.9e-16  Score=146.70  Aligned_cols=191  Identities=22%  Similarity=0.207  Sum_probs=137.4

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++.|+++|||.++|+..|+..+.++|. +++..+|.. +.+...                      ++..+  +...+.
T Consensus        32 ~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~~----------------------i~~vk--~~l~v~   86 (325)
T cd00381          32 TLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQAEE----------------------VRKVK--GRLLVG   86 (325)
T ss_pred             ccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHHH----------------------HHHhc--cCceEE
Confidence            5788999999999999999998889886 887766532 222110                      11111  123444


Q ss_pred             EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCCChHHH
Q 020428           81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDT  159 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~~  159 (326)
                      +..+.+++....+...++.+++.|+++++.          |     +++...++++.+++... +||.+    |.  ..+
T Consensus        87 ~~~~~~~~~~~~~~~l~eagv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~--v~t  145 (325)
T cd00381          87 AAVGTREDDKERAEALVEAGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GN--VVT  145 (325)
T ss_pred             EecCCChhHHHHHHHHHhcCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEE----CC--CCC
Confidence            556667777777666676699999998742          1     23566778888888753 55555    11  145


Q ss_pred             HHHHHHHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          160 VELARRIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .+.++.+.++|+|+|.++..      ++...+.+.+++..+.++.+..   ++|||++|||.++.|+.+++ ..|||+||
T Consensus       146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl-a~GA~~Vm  224 (325)
T cd00381         146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKAL-AAGADAVM  224 (325)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HcCCCEEE
Confidence            67788999999999998632      3333345667888888776654   69999999999999999999 59999999


Q ss_pred             eccchhcCc
Q 020428          231 AARGALWNA  239 (326)
Q Consensus       231 iGr~~l~~P  239 (326)
                      +||.+....
T Consensus       225 iGt~fa~t~  233 (325)
T cd00381         225 LGSLLAGTD  233 (325)
T ss_pred             ecchhcccc
Confidence            999999744

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.72  E-value=8.3e-17  Score=145.17  Aligned_cols=156  Identities=19%  Similarity=0.273  Sum_probs=117.2

Q ss_pred             HHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428           91 LTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT  169 (326)
Q Consensus        91 ~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~  169 (326)
                      .++|+++++ |++.|++|.|||+..+.++  |.+++++|+.+.    ++++.+++||+.|+|.|.     ...++.|+++
T Consensus        27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~   95 (293)
T PRK04180         27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEAL   95 (293)
T ss_pred             HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence            456777777 9999999999999875555  999999998866    667778999999999863     4456666666


Q ss_pred             CCcEEEEeecccC-----------------------------------------------------------------CC
Q 020428          170 GVSALAVHGRKVA-----------------------------------------------------------------DR  184 (326)
Q Consensus       170 G~d~i~vh~r~~~-----------------------------------------------------------------~~  184 (326)
                      |+|.|.-+.|.+.                                                                 ..
T Consensus        96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g  175 (293)
T PRK04180         96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS  175 (293)
T ss_pred             CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence            6666653322110                                                                 01


Q ss_pred             C----------CCcCCHHHHHHHHHhcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHH
Q 020428          185 P----------RDPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWED  252 (326)
Q Consensus       185 ~----------~~~~~~~~i~~i~~~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~  252 (326)
                      |          ...++|+.++++++..++||+  +.|||.|++++..++ ++|||+|++|++++..+         .+..
T Consensus       176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vm-e~GAdgVaVGSaI~ks~---------dP~~  245 (293)
T PRK04180        176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMM-QLGADGVFVGSGIFKSG---------DPEK  245 (293)
T ss_pred             CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHH-HhCCCEEEEcHHhhcCC---------CHHH
Confidence            1          124689999999999999998  999999999999999 59999999999976433         2344


Q ss_pred             HHHHHHHHHHhhccC
Q 020428          253 VKREYVRKSIFWENN  267 (326)
Q Consensus       253 ~~~~~~~~~~~~~~~  267 (326)
                      ..++|.+....|..+
T Consensus       246 ~akafv~ai~~~~~~  260 (293)
T PRK04180        246 RARAIVEATTHYDDP  260 (293)
T ss_pred             HHHHHHHHHHHcCCH
Confidence            555666666666554

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.70  E-value=2.4e-16  Score=143.80  Aligned_cols=142  Identities=22%  Similarity=0.268  Sum_probs=115.7

Q ss_pred             EEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC------
Q 020428           80 FQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL------  153 (326)
Q Consensus        80 vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g------  153 (326)
                      +|++| ....+.++.+.+..|++.|.||              ++++.+|+++.++++...+. .+++++++|.+      
T Consensus        77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~  140 (258)
T PRK01033         77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD  140 (258)
T ss_pred             EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence            46654 3333444445554589999987              56788999999999988533 25677766644      


Q ss_pred             -----C---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcC
Q 020428          154 -----K---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG  225 (326)
Q Consensus       154 -----~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~G  225 (326)
                           |   +..+..++++.+++.|++.+++|++++++.++|+ ||+.++++++.+++|||++|||.|.+|+.++++.+|
T Consensus       141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~-d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~G  219 (258)
T PRK01033        141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY-DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLG  219 (258)
T ss_pred             EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCC
Confidence                 2   2345789999999999999999999999999886 999999999999999999999999999999997799


Q ss_pred             CcEEEeccchhcC
Q 020428          226 ASSVMAARGALWN  238 (326)
Q Consensus       226 ad~VmiGr~~l~~  238 (326)
                      ||||++|+++...
T Consensus       220 vdgVivg~a~~~~  232 (258)
T PRK01033        220 ADAAAAGSLFVFK  232 (258)
T ss_pred             CCEEEEcceeeeC
Confidence            9999999998764

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=99.65  E-value=1.4e-14  Score=125.22  Aligned_cols=192  Identities=18%  Similarity=0.146  Sum_probs=135.3

Q ss_pred             eEEccccCCC---CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEEC
Q 020428            7 LVLAPMVRVG---TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMG   83 (326)
Q Consensus         7 iilAPM~g~t---~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~   83 (326)
                      +++++|++-.   ...+...+.+.|++++.++....+......      ..         .+.+....+..+.|+++|+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~   65 (200)
T cd04722           1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAET------DD---------KEVLKEVAAETDLPLGVQLA   65 (200)
T ss_pred             CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCC------cc---------ccHHHHHHhhcCCcEEEEEc
Confidence            4688998853   245555666668999888766554322100      00         00011222344569999999


Q ss_pred             CCCHHHHHH-HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALT-AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~-aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~  160 (326)
                      .+++.+... +++.+.+ |+|+|+||.+||..              +++..++++++++.+ +.|+.+|++...+.... 
T Consensus        66 ~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-  130 (200)
T cd04722          66 INDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA-  130 (200)
T ss_pred             cCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-
Confidence            888765543 3455555 99999999999854              788899999999887 89999999864332211 


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcC--CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPA--KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~--~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                          .+.+.|+|+|.++++...+....+.  ....+..+++..++||+++|||++++++.++++ .|||+|++||
T Consensus       131 ----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~-~Gad~v~vgs  200 (200)
T cd04722         131 ----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALA-LGADGVIVGS  200 (200)
T ss_pred             ----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-hCCCEEEecC
Confidence                1788999999999887765433221  124456666778999999999999999999995 6999999997

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=99.65  E-value=2e-15  Score=142.54  Aligned_cols=189  Identities=16%  Similarity=0.221  Sum_probs=121.7

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++.||++|||.++|+..+...+.+.|. |.+-+...+++.+...-+                     +.....+.|+.+
T Consensus         9 gi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~---------------------~~~~~t~~pfgv   67 (330)
T PF03060_consen    9 GIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIR---------------------KIRALTDKPFGV   67 (330)
T ss_dssp             T-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHH---------------------HHHHH-SS-EEE
T ss_pred             CCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHH---------------------HHHhhccccccc
Confidence            5789999999999999999999999975 888766655544422110                     011112348999


Q ss_pred             EECCCC--HHHH--------H-HHHHHhh-c--------------CCCEEEEccCCCccccccccccccccCChHHHHHH
Q 020428           81 QMGTSD--AVRA--------L-TAAKMVC-K--------------DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDI  134 (326)
Q Consensus        81 Ql~g~~--~~~~--------~-~aa~~~~-~--------------~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~i  134 (326)
                      +++...  +...        . ....... .              +.+.|-..+|.|..                   ++
T Consensus        68 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~  128 (330)
T PF03060_consen   68 NLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP-------------------EV  128 (330)
T ss_dssp             EEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H-------------------HH
T ss_pred             cccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH-------------------HH
Confidence            997543  2221        0 0111111 1              34588888887743                   34


Q ss_pred             HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc--CCHHHHHHHHHhcCCcEEEeCCCC
Q 020428          135 LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP--AKWGEIADIVAALSIPVIANGDVF  212 (326)
Q Consensus       135 v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~--~~~~~i~~i~~~~~iPVi~nGgI~  212 (326)
                      ++.+++. ++.+....       .+.+.|+.+.+.|+|.|++.|....++....  ..+.++.++++.+++|||+.|||.
T Consensus       129 i~~l~~~-gi~v~~~v-------~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~  200 (330)
T PF03060_consen  129 IERLHAA-GIKVIPQV-------TSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIA  200 (330)
T ss_dssp             HHHHHHT-T-EEEEEE-------SSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--
T ss_pred             HHHHHHc-CCcccccc-------CCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcC
Confidence            5666554 78888877       3467788999999999999999877654422  247888999999999999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          213 EYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      |.+++..++ ..|||||++|+.++..+
T Consensus       201 dg~~iaaal-~lGA~gV~~GTrFl~t~  226 (330)
T PF03060_consen  201 DGRGIAAAL-ALGADGVQMGTRFLATE  226 (330)
T ss_dssp             SHHHHHHHH-HCT-SEEEESHHHHTST
T ss_pred             CHHHHHHHH-HcCCCEeecCCeEEecc
Confidence            999999999 69999999999999754

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=99.63  E-value=5.6e-15  Score=132.75  Aligned_cols=141  Identities=22%  Similarity=0.281  Sum_probs=110.8

Q ss_pred             EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec----CC
Q 020428           80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR----LL  153 (326)
Q Consensus        80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r----~g  153 (326)
                      +|+.|  .+.++..++   +..|++.|=              .|++++.+|+.+.++++...+.+.+++.+|.+    .+
T Consensus        77 v~~~GGI~~~ed~~~~---~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g  139 (233)
T PRK00748         77 VQVGGGIRSLETVEAL---LDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDG  139 (233)
T ss_pred             EEEcCCcCCHHHHHHH---HHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEcc
Confidence            44543  455555443   334777764              45778889999999999886655445554422    13


Q ss_pred             C---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          154 K---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       154 ~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      |   +..++.++++.+++.|++.|++|++++++.+.+ +||+.++++++.+++|||++|||.|.+|+.++++.+||+|||
T Consensus       140 ~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~  218 (233)
T PRK00748        140 WLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVI  218 (233)
T ss_pred             CeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEE
Confidence            4   234678999999999999999999999999888 699999999999999999999999999999999655599999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +||+++..
T Consensus       219 vg~a~~~~  226 (233)
T PRK00748        219 VGRALYEG  226 (233)
T ss_pred             EEHHHHcC
Confidence            99999875

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=99.62  E-value=1.8e-14  Score=136.27  Aligned_cols=207  Identities=16%  Similarity=0.177  Sum_probs=145.0

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++|||+...      +....+.|.+.|...+.+-+. ..++.                     + +...  ..+
T Consensus        78 ~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~s-s~slE---------------------e-v~~~--~~~  132 (367)
T TIGR02708        78 KLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYS-TADLP---------------------E-ISEA--LNG  132 (367)
T ss_pred             ccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccc-cCCHH---------------------H-HHhh--cCC
Confidence            356799999998532      366777888878766654331 11111                     0 1111  112


Q ss_pred             CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----cc-----------------ccccc-----cCC
Q 020428           76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GG-----------------MGAAL-----LSK  127 (326)
Q Consensus        76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~-----------------~G~~l-----~~~  127 (326)
                      .|..+||.- .|.+...+..+++++ |+..|=|...+|..-.+.    .+                 .+...     ..+
T Consensus       133 ~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (367)
T TIGR02708       133 TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAK  212 (367)
T ss_pred             CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccC
Confidence            479999964 666666777778776 999998888877532210    00                 01100     011


Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcE
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPV  205 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPV  205 (326)
                      +.+--+.++.+++.+++||++|-   .   ...+.++.+.++|+|+|.|.+.-..|.+.++++|+.+.++++.+  ++||
T Consensus       213 ~~~~w~~i~~l~~~~~~PvivKG---v---~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~v  286 (367)
T TIGR02708       213 QKLSPRDIEEIAGYSGLPVYVKG---P---QCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPI  286 (367)
T ss_pred             CCCCHHHHHHHHHhcCCCEEEeC---C---CCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcE
Confidence            22223567888888899999994   1   23677899999999999776555677788899999999999887  4999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |++|||++..|+.+++. .|||+|||||++|..-.
T Consensus       287 i~dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~~la  320 (367)
T TIGR02708       287 VFDSGVRRGQHVFKALA-SGADLVALGRPVIYGLA  320 (367)
T ss_pred             EeeCCcCCHHHHHHHHH-cCCCEEEEcHHHHHHHH
Confidence            99999999999999995 99999999999876533

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=99.61  E-value=1.6e-14  Score=134.06  Aligned_cols=186  Identities=14%  Similarity=0.146  Sum_probs=128.9

Q ss_pred             CCceEEccccCCCC-HHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccC-CCCcEEE
Q 020428            4 QNKLVLAPMVRVGT-LPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ-ERNHVVF   80 (326)
Q Consensus         4 ~~~iilAPM~g~t~-~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~v   80 (326)
                      +.||+++||.++|+ +.|...+.+.|. +++-....+++.+...                     +-++... .+.|+.|
T Consensus         2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~---------------------i~~~~~l~tdkPfGV   60 (320)
T cd04743           2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKAL---------------------LEETAELLGDKPWGV   60 (320)
T ss_pred             CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHH---------------------HHHHHHhccCCCeEE
Confidence            57999999999998 899999999975 7766555544443210                     1011111 2469999


Q ss_pred             EECC--CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428           81 QMGT--SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        81 Ql~g--~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~  157 (326)
                      +|..  .++ .+.+..+.+.+ ++..|-+..|.|..                     ++.+++. ++++....       
T Consensus        61 nl~~~~~~~-~~~~~l~vi~e~~v~~V~~~~G~P~~---------------------~~~lk~~-Gi~v~~~v-------  110 (320)
T cd04743          61 GILGFVDTE-LRAAQLAVVRAIKPTFALIAGGRPDQ---------------------ARALEAI-GISTYLHV-------  110 (320)
T ss_pred             EEeccCCCc-chHHHHHHHHhcCCcEEEEcCCChHH---------------------HHHHHHC-CCEEEEEe-------
Confidence            9954  332 22333344434 78888888776632                     3455543 78887766       


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc----------CCcEEEeCCCCCHHHHHHHHHhcCC-
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL----------SIPVIANGDVFEYDDFQRIKTAAGA-  226 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~----------~iPVi~nGgI~s~~d~~~~l~~~Ga-  226 (326)
                      .+.+.++.+++.|+|.|++.|....++-.....+.++.++.+.+          ++|||+.|||.+...+..++ ..|| 
T Consensus       111 ~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaal-aLGA~  189 (320)
T cd04743         111 PSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVS-ALAAP  189 (320)
T ss_pred             CCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHH-HcCCc
Confidence            34667899999999999999999887643223344455554433          79999999999999999888 5777 


Q ss_pred             -------cEEEeccchhcCccc
Q 020428          227 -------SSVMAARGALWNASI  241 (326)
Q Consensus       227 -------d~VmiGr~~l~~P~l  241 (326)
                             +||++|+.++..+.-
T Consensus       190 ~~~~Ga~~GV~mGTrFl~t~Es  211 (320)
T cd04743         190 LAERGAKVGVLMGTAYLFTEEA  211 (320)
T ss_pred             ccccccccEEEEccHHhcchhh
Confidence                   899999998875544

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=99.61  E-value=8.2e-15  Score=131.73  Aligned_cols=141  Identities=26%  Similarity=0.317  Sum_probs=110.0

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g--  153 (326)
                      .|+  |++ .++..+.++.+.+..|++.|.++              +.++.+|+++.++++...+. .++++++++.+  
T Consensus        75 ~pv--~~~-ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~  136 (232)
T TIGR03572        75 MPL--TVG-GGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELD  136 (232)
T ss_pred             CCE--EEE-CCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCC
Confidence            354  553 33333444444444589999875              67789999999998877443 25677766552  


Q ss_pred             ----------C---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428          154 ----------K---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       154 ----------~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~  220 (326)
                                |   +..++.++++.+++.|+|+|++|+++..+...+ .+|+.++++++.+++||+++|||+|++|+.++
T Consensus       137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~  215 (232)
T TIGR03572       137 GSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAVSIPVIALGGAGSLDDLVEV  215 (232)
T ss_pred             CCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhCCCCEEEECCCCCHHHHHHH
Confidence                      2   134578999999999999999999988877655 48999999999999999999999999999996


Q ss_pred             HHhcCCcEEEeccch
Q 020428          221 KTAAGASSVMAARGA  235 (326)
Q Consensus       221 l~~~Gad~VmiGr~~  235 (326)
                      +..+|||+|++|+++
T Consensus       216 l~~~gadgV~vg~a~  230 (232)
T TIGR03572       216 ALEAGASAVAAASLF  230 (232)
T ss_pred             HHHcCCCEEEEehhh
Confidence            768999999999986

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd04732 HisA HisA

Probab=99.60  E-value=1.2e-14  Score=130.70  Aligned_cols=143  Identities=24%  Similarity=0.300  Sum_probs=110.6

Q ss_pred             EEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEec----
Q 020428           79 VFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIR----  151 (326)
Q Consensus        79 ~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r----  151 (326)
                      -+|+.|  .++++..+   .+..|+|.|-+              |+.++.+|+.+.++.+.+.+ .+-+++.+|.+    
T Consensus        75 pv~~~GgI~~~e~~~~---~~~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~  137 (234)
T cd04732          75 PVQVGGGIRSLEDIER---LLDLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVAT  137 (234)
T ss_pred             CEEEeCCcCCHHHHHH---HHHcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEE
Confidence            355544  45554443   44458888754              46778899999999988754 33233333321    


Q ss_pred             CCC---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          152 LLK---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       152 ~g~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      .+|   +..++.++++.+++.|+++|++|++++.+.+.+ .+|+.++++++.+++||+++|||+|.+|+.++++ .||++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~g  215 (234)
T cd04732         138 KGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAATGIPVIASGGVSSLDDIKALKE-LGVAG  215 (234)
T ss_pred             CCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCE
Confidence            122   244678999999999999999999999888766 7899999999999999999999999999999995 79999


Q ss_pred             EEeccchhcCcc
Q 020428          229 VMAARGALWNAS  240 (326)
Q Consensus       229 VmiGr~~l~~P~  240 (326)
                      ||+||+++.++-
T Consensus       216 v~vg~~~~~~~~  227 (234)
T cd04732         216 VIVGKALYEGKI  227 (234)
T ss_pred             EEEeHHHHcCCC
Confidence            999999998873

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.60  E-value=1.3e-14  Score=131.37  Aligned_cols=145  Identities=22%  Similarity=0.266  Sum_probs=111.3

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEec---
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIR---  151 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r---  151 (326)
                      .|+++.=+-.+.+++.+..   ..|++.+.++              +.++.+|+.+.++++.+.+ .+-+++.+|.|   
T Consensus        72 ~pv~~~GGI~s~~d~~~~l---~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~  134 (243)
T cd04731          72 IPLTVGGGIRSLEDARRLL---RAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDG  134 (243)
T ss_pred             CCEEEeCCCCCHHHHHHHH---HcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCC
Confidence            4655431224555554443   3588888875              4667889999999998853 35455555543   


Q ss_pred             -------CCC--ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Q 020428          152 -------LLK--SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       152 -------~g~--~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~  222 (326)
                             .++  +..++.++++.+++.|+|+|++|+++..+...+ .+|+.++++++.+++||+++|||+|++|+.++++
T Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~  213 (243)
T cd04731         135 GYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFE  213 (243)
T ss_pred             ceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence                   332  245688999999999999999999988765444 5899999999999999999999999999999997


Q ss_pred             hcCCcEEEeccchhcC
Q 020428          223 AAGASSVMAARGALWN  238 (326)
Q Consensus       223 ~~Gad~VmiGr~~l~~  238 (326)
                      .+|||+||+||+++..
T Consensus       214 ~~g~dgv~vg~al~~~  229 (243)
T cd04731         214 EGGADAALAASIFHFG  229 (243)
T ss_pred             hCCCCEEEEeHHHHcC
Confidence            7799999999997654

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=99.59  E-value=3.2e-14  Score=134.38  Aligned_cols=208  Identities=16%  Similarity=0.198  Sum_probs=142.9

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++|||....      +....+.|.+.|...+.+-+. ...+.                     . +... . .+
T Consensus        70 ~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s-~~s~E---------------------e-i~~~-~-~~  124 (351)
T cd04737          70 KLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYS-NTSLE---------------------E-IAKA-S-NG  124 (351)
T ss_pred             cccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCC-CCCHH---------------------H-HHHh-c-CC
Confidence            356789999998522      256667777777766654321 11110                     0 1111 1 12


Q ss_pred             CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----ccc------------------ccccc-----C
Q 020428           76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGM------------------GAALL-----S  126 (326)
Q Consensus        76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~------------------G~~l~-----~  126 (326)
                      .|..+|+.. .|.+...+..++++. |+..|-+...+|..-.+.    .++                  |....     .
T Consensus       125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (351)
T cd04737         125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA  204 (351)
T ss_pred             CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence            378999964 566767777777766 999888888776533221    000                  00000     0


Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      ++.+.-+.++.+++.++.||.+|.-      ...+.++.+.++|+|+|+|++.-..+.+.+++.++.+.++++.+  ++|
T Consensus       205 ~~~~~~~~l~~lr~~~~~PvivKgv------~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~  278 (351)
T cd04737         205 KQKLSPADIEFIAKISGLPVIVKGI------QSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVP  278 (351)
T ss_pred             cCCCCHHHHHHHHHHhCCcEEEecC------CCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCe
Confidence            1223446778889888999999942      23477889999999999994333344556788899999999888  699


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      ||++|||++..|+.+++ ..||++||+||+++.....
T Consensus       279 vi~dGGIr~g~Di~kaL-alGA~~V~iGr~~l~~la~  314 (351)
T cd04737         279 IIFDSGVRRGEHVFKAL-ASGADAVAVGRPVLYGLAL  314 (351)
T ss_pred             EEEECCCCCHHHHHHHH-HcCCCEEEECHHHHHHHhh
Confidence            99999999999999999 5999999999998886544

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.56  E-value=6.8e-14  Score=126.43  Aligned_cols=148  Identities=23%  Similarity=0.333  Sum_probs=111.7

Q ss_pred             EEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-hcccCcEEEE---ec
Q 020428           78 VVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-RNLDVPVTCK---IR  151 (326)
Q Consensus        78 ~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~~~~~pv~vK---~r  151 (326)
                      +-+|++|  ++.++...+   +..|++.|-+              |+.++++|+.+.++++.+. +.+-+.+++|   +.
T Consensus        77 ~~l~v~GGi~~~~~~~~~---~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~  139 (241)
T PRK13585         77 VPVQLGGGIRSAEDAASL---LDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVV  139 (241)
T ss_pred             CcEEEcCCcCCHHHHHHH---HHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEE
Confidence            3345543  455554443   3358888876              4667889999999888873 3322223332   11


Q ss_pred             -CCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          152 -LLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       152 -~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                       .||..   .++.++++.+++.|++.|++|+++..+.+.+ .+|+.++++++.+++||+++|||+|++|+.+++ .+||+
T Consensus       140 ~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~-~~Ga~  217 (241)
T PRK13585        140 IKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG-VNTEPVKELVDSVDIPVIASGGVTTLDDLRALK-EAGAA  217 (241)
T ss_pred             ECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCC
Confidence             14432   2689999999999999999999988776644 699999999999999999999999999999977 79999


Q ss_pred             EEEeccchhcCcccccc
Q 020428          228 SVMAARGALWNASIFSS  244 (326)
Q Consensus       228 ~VmiGr~~l~~P~lf~~  244 (326)
                      +|++||+++.+|..+.+
T Consensus       218 gv~vgsa~~~~~~~~~~  234 (241)
T PRK13585        218 GVVVGSALYKGKFTLEE  234 (241)
T ss_pred             EEEEEHHHhcCCcCHHH
Confidence            99999999998876543

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=99.55  E-value=1.2e-13  Score=124.01  Aligned_cols=140  Identities=21%  Similarity=0.292  Sum_probs=108.8

Q ss_pred             EEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428           79 VFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL----  152 (326)
Q Consensus        79 ~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~----  152 (326)
                      -+|+.|  .+.++..++..   .|++.|=+              |+.++.+|+.+.++++++... .+.+++++|.    
T Consensus        74 pi~~ggGI~~~ed~~~~~~---~Ga~~vvl--------------gs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~  135 (230)
T TIGR00007        74 PVQVGGGIRSLEDVEKLLD---LGVDRVII--------------GTAAVENPDLVKELLKEYGPE-RIVVSLDARGGEVA  135 (230)
T ss_pred             CEEEeCCcCCHHHHHHHHH---cCCCEEEE--------------ChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCEEE
Confidence            345533  45555544333   57887744              466778899999999888522 2344454442    


Q ss_pred             --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                        +|.   ..+..++++.+++.|++.+++|++++.+...+ .||+.++++++.+++||+++|||+|.+|+.+++ .+|||
T Consensus       136 ~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~-~~Gad  213 (230)
T TIGR00007       136 VKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAVNVPVIASGGVSSIDDLIALK-KLGVY  213 (230)
T ss_pred             EcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HCCCC
Confidence              343   24678999999999999999999999887765 689999999999999999999999999999998 59999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      +||+||+++.+
T Consensus       214 gv~ig~a~~~~  224 (230)
T TIGR00007       214 GVIVGKALYEG  224 (230)
T ss_pred             EEEEeHHHHcC
Confidence            99999999976

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=99.53  E-value=5.2e-13  Score=126.12  Aligned_cols=209  Identities=19%  Similarity=0.170  Sum_probs=143.1

Q ss_pred             CCCCceEEccccCCC--C----HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG--T----LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t--~----~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++|||....  +    ....+.|.+.|...+.+-+.+ ..+.                     + +.+.. ..+
T Consensus        62 ~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~-~s~e---------------------~-v~~~~-~~~  117 (344)
T cd02922          62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNAS-CSLE---------------------E-IVDAR-PPD  117 (344)
T ss_pred             ccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCccc-CCHH---------------------H-HHHhc-CCC
Confidence            467899999999433  2    356677777777666543221 1110                     0 11111 112


Q ss_pred             CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----cccc-------------------cccc---cCC
Q 020428           76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGM-------------------GAAL---LSK  127 (326)
Q Consensus        76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~-------------------G~~l---~~~  127 (326)
                      .|+.+||. ..|.+...+..++++. |++.+-|++..|....+    +.++                   +...   ..+
T Consensus       118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (344)
T cd02922         118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID  197 (344)
T ss_pred             CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence            47889994 5677778888888876 99999999988854221    1110                   0000   123


Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh---c--C
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA---L--S  202 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~---~--~  202 (326)
                      +...-+.++.+++.++.||.+|--      ...+.++.+.++|+|+|+|.+....+....+..++.+.++++.   +  +
T Consensus       198 ~~~~~~~i~~l~~~~~~PvivKgv------~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~  271 (344)
T cd02922         198 PTLTWDDIKWLRKHTKLPIVLKGV------QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDK  271 (344)
T ss_pred             CCCCHHHHHHHHHhcCCcEEEEcC------CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            445667899999999999999942      2367788999999999999875433333334456667776663   3  5


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +|||+.|||++..|+.+++ ..||++|+|||+++..+..
T Consensus       272 ~~vi~~GGIr~G~Dv~kal-aLGA~aV~iG~~~l~~l~~  309 (344)
T cd02922         272 IEVYVDGGVRRGTDVLKAL-CLGAKAVGLGRPFLYALSA  309 (344)
T ss_pred             ceEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHHHHhh
Confidence            9999999999999999999 6999999999999987754

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=99.51  E-value=1.2e-12  Score=122.15  Aligned_cols=187  Identities=17%  Similarity=0.200  Sum_probs=135.7

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      ++.-|++.++|....+..+..++++.|. +.+.- | ..+...             +|.         +..+..  .+++
T Consensus        35 ~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e~~~-------------~~~---------r~~~~~--~l~v   88 (326)
T PRK05458         35 TFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPEARI-------------PFI---------KDMHEQ--GLIA   88 (326)
T ss_pred             EecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHHHHH-------------HHH---------Hhcccc--ccEE
Confidence            4678999999988888899999999864 33322 2 221111             011         111111  3466


Q ss_pred             EEC-CCCHHHHHHHHHHhhcCC--CEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEE-ecCCCC
Q 020428           81 QMG-TSDAVRALTAAKMVCKDV--AAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCK-IRLLKS  155 (326)
Q Consensus        81 Ql~-g~~~~~~~~aa~~~~~~~--d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK-~r~g~~  155 (326)
                      .+. |.+++++.++.++++.|+  |.|-|.+.-|               +.+.+.++++.+++.++ .||.++ +     
T Consensus        89 ~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g~V-----  148 (326)
T PRK05458         89 SISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAGNV-----  148 (326)
T ss_pred             EEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEEec-----
Confidence            664 567888899998888754  9888865433               33577888999999884 888887 4     


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEe---ecccCC---CCCCcCCHHH--HHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          156 SQDTVELARRIEKTGVSALAVH---GRKVAD---RPRDPAKWGE--IADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh---~r~~~~---~~~~~~~~~~--i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                        .+.+.++.+.++|+|.+.++   |+...+   ...+.++|.+  +.++++.+++|||+.|||.++.|+.+++ ..|||
T Consensus       149 --~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaL-a~GA~  225 (326)
T PRK05458        149 --GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGAT  225 (326)
T ss_pred             --CCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH-HhCCC
Confidence              25677899999999999887   333111   2234567775  8899888899999999999999999999 58999


Q ss_pred             EEEeccchhc
Q 020428          228 SVMAARGALW  237 (326)
Q Consensus       228 ~VmiGr~~l~  237 (326)
                      +||+|+.++.
T Consensus       226 aV~vG~~~~~  235 (326)
T PRK05458        226 MVMIGSLFAG  235 (326)
T ss_pred             EEEechhhcC
Confidence            9999999885

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.50  E-value=6.7e-13  Score=120.87  Aligned_cols=136  Identities=20%  Similarity=0.248  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-h----ccc-------CcEEEEecC
Q 020428           85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-R----NLD-------VPVTCKIRL  152 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~----~~~-------~pv~vK~r~  152 (326)
                      .+.+++.++..   .|++.+-++              +.++.+|+.+.++.+.+. +    .++       .|+.||+|.
T Consensus        84 ~s~~~~~~~l~---~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~  146 (253)
T PRK02083         84 RSVEDARRLLR---AGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHG  146 (253)
T ss_pred             CCHHHHHHHHH---cCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcC
Confidence            45666665544   478888764              567789999999998873 2    123       467899998


Q ss_pred             CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          153 LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       153 g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +++  ..+..++++.+++.|++.+++|+..+.+...++ ||+.++++++.+++|||++|||.|.+|+.++++.+||++||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvi  225 (253)
T PRK02083        147 GRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAAL  225 (253)
T ss_pred             CceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEe
Confidence            654  336789999999999999999886665554444 89999999999999999999999999999999768999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +|++++..
T Consensus       226 vg~al~~~  233 (253)
T PRK02083        226 AASIFHFG  233 (253)
T ss_pred             EhHHHHcC
Confidence            99997754

>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=99.47  E-value=1.1e-12  Score=118.53  Aligned_cols=235  Identities=18%  Similarity=0.186  Sum_probs=152.4

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccc-cccc---cccccCcc---cccccC-------Cccee
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK-CERR---VNEYIGST---DFVEKG-------TDSVV   67 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~---~~~~~~~~---~~~~~~-------~~~~~   67 (326)
                      +++|||.+|.=..-+.-+...++. .|+|++-+.-+.+.+-.. ..+.   +.++.+..   -|-...       ..+..
T Consensus        92 ~f~NPiglAAGfdk~~eaidgL~~-~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r  170 (398)
T KOG1436|consen   92 KFSNPIGLAAGFDKNAEAIDGLAN-SGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKR  170 (398)
T ss_pred             hccCchhhhhccCcchHHHHHHHh-CCCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHH
Confidence            578999998766655556666664 789998887665543211 1110   01111111   110000       00001


Q ss_pred             eecccCCCCcEEEEECCCC--H---HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428           68 FRTCHQERNHVVFQMGTSD--A---VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL  142 (326)
Q Consensus        68 ~~~~~~~~~p~~vQl~g~~--~---~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~  142 (326)
                      ....++...+++|+|+-+.  .   .++.+-.+...+.+|...||.+||+..      |-.-++....+.+++.++..+.
T Consensus       171 ~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtp------Glr~lq~k~~L~~ll~~v~~a~  244 (398)
T KOG1436|consen  171 QAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTP------GLRSLQKKSDLRKLLTKVVQAR  244 (398)
T ss_pred             HhcCCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCc------chhhhhhHHHHHHHHHHHHHHH
Confidence            1222344456889997543  2   355555555445679999999999873      3334444445555555554332


Q ss_pred             -------cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC--------------CCCCC----cCCHHHHHHH
Q 020428          143 -------DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA--------------DRPRD----PAKWGEIADI  197 (326)
Q Consensus       143 -------~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--------------~~~~~----~~~~~~i~~i  197 (326)
                             ..|+.+|+-......+..+++..+.+..+|.+++.+-|..              +..+|    +...+.++++
T Consensus       245 ~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~m  324 (398)
T KOG1436|consen  245 DKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAM  324 (398)
T ss_pred             hccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHH
Confidence                   4599999987667788999999999999999998754432              12223    3345677777


Q ss_pred             HHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          198 VAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       198 ~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      ...+  +||||++|||.|.+|+.+.+ ..||..|++++++.. .|.+|.+
T Consensus       325 Y~lt~g~IpiIG~GGV~SG~DA~Eki-raGASlvQlyTal~yeGp~i~~k  373 (398)
T KOG1436|consen  325 YTLTRGKIPIIGCGGVSSGKDAYEKI-RAGASLVQLYTALVYEGPAIIEK  373 (398)
T ss_pred             HHhccCCCceEeecCccccHhHHHHH-hcCchHHHHHHHHhhcCchhHHH
Confidence            7765  79999999999999999999 699999999999875 7888776

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=99.47  E-value=1.3e-12  Score=115.56  Aligned_cols=146  Identities=22%  Similarity=0.312  Sum_probs=114.2

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL----  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~----  152 (326)
                      ++-+|++|.= .+...+..++..|++.+-+              |+...++|+++.+++++....+-+.+.+|...    
T Consensus        75 ~~~vQvGGGI-Rs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~  139 (241)
T COG0106          75 DVPVQVGGGI-RSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVS  139 (241)
T ss_pred             CCCEEeeCCc-CCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccc
Confidence            5678997631 1222333344457776665              46668999999999999986543334443322    


Q ss_pred             CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc-CCcE
Q 020428          153 LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA-GASS  228 (326)
Q Consensus       153 g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~-Gad~  228 (326)
                      ||..   -+..++++.+++.|+..|.+|..++++..+|+ |++.+.++.+.+++||+++|||.|.+|++.+. .. |+.|
T Consensus       140 GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~-n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~-~~~G~~G  217 (241)
T COG0106         140 GWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGP-NVDLVKELAEAVDIPVIASGGVSSLDDIKALK-ELSGVEG  217 (241)
T ss_pred             cccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCC-CHHHHHHHHHHhCcCEEEecCcCCHHHHHHHH-hcCCCcE
Confidence            5653   36899999999999999999999999887766 89999999999999999999999999999988 46 8999


Q ss_pred             EEeccchhcCc
Q 020428          229 VMAARGALWNA  239 (326)
Q Consensus       229 VmiGr~~l~~P  239 (326)
                      |.+||+++..-
T Consensus       218 vIvG~ALy~g~  228 (241)
T COG0106         218 VIVGRALYEGK  228 (241)
T ss_pred             EEEehHHhcCC
Confidence            99999998754

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.46  E-value=5.7e-12  Score=120.57  Aligned_cols=214  Identities=17%  Similarity=0.143  Sum_probs=135.3

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCccccc-cc----CCcce--------
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFV-EK----GTDSV--------   66 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~-~~----~~~~~--------   66 (326)
                      +.++.||++|||.++|+..+...+.+.|. |++-. ..+++.+...-+..........+. ++    ...+.        
T Consensus        39 l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~  117 (404)
T PRK06843         39 ISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHK-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLE  117 (404)
T ss_pred             cCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecC-CCCHHHHHHHHHHHHhhcCCCceeecccccccchhheeccccch
Confidence            35788999999999999999999999875 66653 344544432221111000000000 00    00000        


Q ss_pred             -------------eeecccCCCCcEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHH
Q 020428           67 -------------VFRTCHQERNHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH  132 (326)
Q Consensus        67 -------------~~~~~~~~~~p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~  132 (326)
                                   .-....+....+.|-. .|..++.+.++..+++.|+|.|=|-+.-+               +.+.+.
T Consensus       118 ~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g---------------~~~~~~  182 (404)
T PRK06843        118 KSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHG---------------HSTRII  182 (404)
T ss_pred             HHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCC---------------CChhHH
Confidence                         0000011112233332 24567777777777777999887754432               245778


Q ss_pred             HHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CCCCcCCHHHHHH---HHHhc
Q 020428          133 DILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RPRDPAKWGEIAD---IVAAL  201 (326)
Q Consensus       133 ~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~~~~~~~~~i~~---i~~~~  201 (326)
                      ++++.+++.+ +.+|.++-=      .+.+.++.+.++|+|+|.+ |.+...       ...+.+++..+..   +.+..
T Consensus       183 ~~v~~ik~~~p~~~vi~g~V------~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~  255 (404)
T PRK06843        183 ELVKKIKTKYPNLDLIAGNI------VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNT  255 (404)
T ss_pred             HHHHHHHhhCCCCcEEEEec------CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhc
Confidence            8899999887 677777542      4567788999999999986 443221       1224456666644   44456


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ++|||+.|||+++.|+.+++ ..||++||+|+.+...
T Consensus       256 ~vpVIAdGGI~~~~Di~KAL-alGA~aVmvGs~~agt  291 (404)
T PRK06843        256 NICIIADGGIRFSGDVVKAI-AAGADSVMIGNLFAGT  291 (404)
T ss_pred             CCeEEEeCCCCCHHHHHHHH-HcCCCEEEEcceeeee
Confidence            89999999999999999999 6999999999998873

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=99.46  E-value=2.3e-12  Score=123.59  Aligned_cols=209  Identities=11%  Similarity=0.036  Sum_probs=123.3

Q ss_pred             CCCCCceEEcccc-CCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcE
Q 020428            1 MDYQNKLVLAPMV-RVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHV   78 (326)
Q Consensus         1 l~l~~~iilAPM~-g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   78 (326)
                      +.++.|||+|||+ |+|+..+...+.+.|. |.+-+...+++.+....+..                  -..... +.|+
T Consensus        10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~i------------------r~~lt~-~~Pf   70 (418)
T cd04742          10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERI------------------QAALGN-GEPY   70 (418)
T ss_pred             hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHH------------------HHhccC-CCCe
Confidence            3578899999999 7999999999999975 88877777666553211100                  000111 4599


Q ss_pred             EEEECCC--CHHHHHHHHHHhhc-CCCEEEEcc-CCCcccccc-ccccccccCChHHHHHHHHHHhhcccCcEEEEecC-
Q 020428           79 VFQMGTS--DAVRALTAAKMVCK-DVAAIDINM-GCPKSFSVS-GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-  152 (326)
Q Consensus        79 ~vQl~g~--~~~~~~~aa~~~~~-~~d~idlN~-gcP~~~~~~-~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-  152 (326)
                      +|||+.+  +++......+.+.+ ++..|+... +-|.+.... ...|...-.+-          +-.....|..|+.. 
T Consensus        71 GVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g----------~~~~~~~ViakVsr~  140 (418)
T cd04742          71 GVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADG----------RVQIANRIIAKVSRP  140 (418)
T ss_pred             EEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccc----------cccccceEEEecCCh
Confidence            9999863  33333344455444 888887653 112111100 00000000000          00001123333310 


Q ss_pred             -------CCChH-----------HHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHH---HHhc--------C
Q 020428          153 -------LKSSQ-----------DTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADI---VAAL--------S  202 (326)
Q Consensus       153 -------g~~~~-----------~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i---~~~~--------~  202 (326)
                             ++-+.           -+.+.|+.+++.| +|.|++. ....++......+.++..+   ++.+        +
T Consensus       141 evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~  219 (418)
T cd04742         141 EVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRP  219 (418)
T ss_pred             hhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCC
Confidence                   00000           1466778888888 5999998 5554443222234444444   4444        6


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +||++.|||.|++++..++ ..|||+|++|+.++..+.
T Consensus       220 ipViAAGGI~tg~~vaAA~-alGAd~V~~GT~flat~E  256 (418)
T cd04742         220 IRVGAAGGIGTPEAAAAAF-ALGADFIVTGSINQCTVE  256 (418)
T ss_pred             ceEEEECCCCCHHHHHHHH-HcCCcEEeeccHHHhCcc
Confidence            9999999999999999999 699999999999987553

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=99.45  E-value=4e-13  Score=126.53  Aligned_cols=188  Identities=19%  Similarity=0.256  Sum_probs=126.3

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCc---
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNH---   77 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---   77 (326)
                      .++.|||++||+++|+..+...+.+.|. |.+-.-....+.+....+                     +.......|   
T Consensus        12 ~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~---------------------~~~~~~~~p~~~   70 (336)
T COG2070          12 GIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIR---------------------KIRALTDKPFVA   70 (336)
T ss_pred             CccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHH---------------------HHHHhcCCcchh
Confidence            5788999999999999999999999864 644333333322211111                     111111223   


Q ss_pred             ---------EEEEECCCCHHHHHHHHHHhh-c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           78 ---------VVFQMGTSDAVRALTAAKMVC-K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        78 ---------~~vQl~g~~~~~~~~aa~~~~-~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                               +.+.+.......+.+....+. . +...+-..+|=|                |   .++++.++. .+..+
T Consensus        71 ~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~----------------~---~~~i~~~~~-~g~~v  130 (336)
T COG2070          71 NNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP----------------P---AEFVARLKA-AGIKV  130 (336)
T ss_pred             cccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCCCC----------------c---HHHHHHHHH-cCCeE
Confidence                     333333221123333333332 2 444555555421                1   223555554 47778


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC----CcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHH
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR----DPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIK  221 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~----~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l  221 (326)
                      ..++       .+...++..++.|+|.|+++|-...++..    .+....++.++++.++ ||||+.|||.|.+++..++
T Consensus       131 ~~~v-------~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAl  203 (336)
T COG2070         131 IHSV-------ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAAL  203 (336)
T ss_pred             EEEe-------CCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHH
Confidence            8777       45788999999999999999988877644    3445778899999999 9999999999999999999


Q ss_pred             HhcCCcEEEeccchhcC
Q 020428          222 TAAGASSVMAARGALWN  238 (326)
Q Consensus       222 ~~~Gad~VmiGr~~l~~  238 (326)
                       ..||++|++|+.++..
T Consensus       204 -alGA~gVq~GT~Fl~t  219 (336)
T COG2070         204 -ALGADGVQMGTRFLAT  219 (336)
T ss_pred             -HhccHHHHhhhhhhcc
Confidence             6999999999999864

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=99.45  E-value=1.2e-12  Score=119.38  Aligned_cols=141  Identities=20%  Similarity=0.248  Sum_probs=109.1

Q ss_pred             EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-hcc--cC-----cE---
Q 020428           80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-RNL--DV-----PV---  146 (326)
Q Consensus        80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~~~--~~-----pv---  146 (326)
                      +|+.|  .+.+++.++..   .|++.+-+              |+.++.+|+++.++.+... +.+  .+     ++   
T Consensus        77 v~~~GGi~s~~d~~~~~~---~Ga~~viv--------------gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~  139 (254)
T TIGR00735        77 LTVGGGIKSIEDVDKLLR---AGADKVSI--------------NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSY  139 (254)
T ss_pred             EEEECCCCCHHHHHHHHH---cCCCEEEE--------------ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence            45543  45666665433   47888766              3667789999999988874 333  22     11   


Q ss_pred             ---EEEecCCCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Q 020428          147 ---TCKIRLLKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIK  221 (326)
Q Consensus       147 ---~vK~r~g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l  221 (326)
                         -||+|.+++  ..+..++++.++++|++.|++|++++.+. .+.++|++++++++.+++|||++|||+|++|+.+++
T Consensus       140 ~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~-~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~  218 (254)
T TIGR00735       140 CWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT-KSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAF  218 (254)
T ss_pred             ccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC-CCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence               467776543  45688999999999999999999988655 456799999999999999999999999999999999


Q ss_pred             HhcCCcEEEeccchhcC
Q 020428          222 TAAGASSVMAARGALWN  238 (326)
Q Consensus       222 ~~~Gad~VmiGr~~l~~  238 (326)
                      +..|+|+|++|++++..
T Consensus       219 ~~g~~dgv~~g~a~~~~  235 (254)
T TIGR00735       219 TKGKADAALAASVFHYR  235 (254)
T ss_pred             HcCCcceeeEhHHHhCC
Confidence            66569999999996543

>PLN02535 glycolate oxidase

Probab=99.44  E-value=5.7e-12  Score=119.38  Aligned_cols=208  Identities=18%  Similarity=0.157  Sum_probs=141.9

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++||++...      +....+.+.+.|.-.+.+-+ +..++.                     + +.   ...+
T Consensus        70 ~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~-s~~slE---------------------e-va---~~~~  123 (364)
T PLN02535         70 TISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFM-ASCTVE---------------------E-VA---SSCN  123 (364)
T ss_pred             cccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCc-ccCCHH---------------------H-HH---hcCC
Confidence            356799999987522      35566777777766555432 111111                     0 11   1112


Q ss_pred             CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccc--------------------cc----c-
Q 020428           76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMG--------------------AA----L-  124 (326)
Q Consensus        76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G--------------------~~----l-  124 (326)
                      .|..+||.- .|.+...+..+++++ ||..+=+...+|..-.+    +.++.                    ..    . 
T Consensus       124 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (364)
T PLN02535        124 AVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFAS  203 (364)
T ss_pred             CCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHH
Confidence            479999964 667777788888876 99999888888774322    11110                    00    0 


Q ss_pred             -cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--
Q 020428          125 -LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--  201 (326)
Q Consensus       125 -~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--  201 (326)
                       .-++.+--+-++.+++.++.||.+|-=+      ..+.++.+.++|+|+|.|.+....+...+++..+.+.++++.+  
T Consensus       204 ~~~~~~~tW~~i~~lr~~~~~PvivKgV~------~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~  277 (364)
T PLN02535        204 ETFDASLSWKDIEWLRSITNLPILIKGVL------TREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGG  277 (364)
T ss_pred             hccCCCCCHHHHHHHHhccCCCEEEecCC------CHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhc
Confidence             0022233356788888889999999532      1344889999999999998654444334555678888888876  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccc
Q 020428          202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF  242 (326)
Q Consensus       202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf  242 (326)
                      ++|||+.|||++..|+.+++ ..||++|++||+++..+..-
T Consensus       278 ~ipVi~dGGIr~g~Dv~KAL-alGA~aV~vGr~~l~~l~~~  317 (364)
T PLN02535        278 RVPVLLDGGVRRGTDVFKAL-ALGAQAVLVGRPVIYGLAAK  317 (364)
T ss_pred             CCCEEeeCCCCCHHHHHHHH-HcCCCEEEECHHHHhhhhhc
Confidence            69999999999999999999 69999999999999876643

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=99.44  E-value=1.9e-11  Score=117.90  Aligned_cols=110  Identities=18%  Similarity=0.203  Sum_probs=86.1

Q ss_pred             cCChHHHHHHHHHHhhccc-CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCC--------CCcCCHHHHH
Q 020428          125 LSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP--------RDPAKWGEIA  195 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~--------~~~~~~~~i~  195 (326)
                      ..+++.+.++++.+++.++ +||.+|+-.+.   ...++++.++..|+|+|+|.|.......        .+.+....+.
T Consensus       195 ~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~  271 (392)
T cd02808         195 IYSIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLA  271 (392)
T ss_pred             CCCHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHH
Confidence            3567889999999999987 99999997643   3347788888888999999987543221        1333344555


Q ss_pred             HHHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          196 DIVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       196 ~i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ++.+.+       ++|||+.|||.|..|+.+++ ..|||+|.+||+++.-
T Consensus       272 ~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal-aLGAd~V~ig~~~l~a  320 (392)
T cd02808         272 RAHQALVKNGLRDRVSLIASGGLRTGADVAKAL-ALGADAVGIGTAALIA  320 (392)
T ss_pred             HHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH-HcCCCeeeechHHHHh
Confidence            555533       69999999999999999999 6999999999999953

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=99.43  E-value=1.2e-11  Score=115.15  Aligned_cols=190  Identities=16%  Similarity=0.167  Sum_probs=133.0

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      ++.-|++.+.|....+..+..++++.|.-.+.-.+ +++....             |+         +..++.+  +.+.
T Consensus        32 ~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~-~~E~~~s-------------fv---------rk~k~~~--L~v~   86 (321)
T TIGR01306        32 KFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF-DEESRIP-------------FI---------KDMQERG--LFAS   86 (321)
T ss_pred             EecCcEEeeccchhhhHHHHHHHHHcCCEEEEecC-CHHHHHH-------------HH---------Hhccccc--cEEE
Confidence            46789999999888899999999998753333332 2222111             11         1112222  3444


Q ss_pred             E-CCCCHHHHHHHHHHhhcC--CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428           82 M-GTSDAVRALTAAKMVCKD--VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD  158 (326)
Q Consensus        82 l-~g~~~~~~~~aa~~~~~~--~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~  158 (326)
                      + .|..++++.++.++++.+  .|.|-+-...               -+-+.+.+.++.+++.+..|+.++-..     .
T Consensus        87 ~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ah---------------g~s~~~~~~i~~i~~~~p~~~vi~GnV-----~  146 (321)
T TIGR01306        87 ISVGVKACEYEFVTQLAEEALTPEYITIDIAH---------------GHSNSVINMIKHIKTHLPDSFVIAGNV-----G  146 (321)
T ss_pred             EEcCCCHHHHHHHHHHHhcCCCCCEEEEeCcc---------------CchHHHHHHHHHHHHhCCCCEEEEecC-----C
Confidence            4 367888899999988776  5765553221               134678888999999887775555433     2


Q ss_pred             HHHHHHHHHHcCCcEEEEe---eccc---CCCCCCcCCH--HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          159 TVELARRIEKTGVSALAVH---GRKV---ADRPRDPAKW--GEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh---~r~~---~~~~~~~~~~--~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +.+.|+.+.++|+|+|.|+   |++.   .....+..+|  ..+.++++..++|||+.|||++..|+.+++ ..|||+||
T Consensus       147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KAL-a~GAd~Vm  225 (321)
T TIGR01306       147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGASMVM  225 (321)
T ss_pred             CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHH-HcCCCEEe
Confidence            5678999999999999998   5532   2211233344  478888888899999999999999999999 58999999


Q ss_pred             eccchhc
Q 020428          231 AARGALW  237 (326)
Q Consensus       231 iGr~~l~  237 (326)
                      +||.+-.
T Consensus       226 ig~~~ag  232 (321)
T TIGR01306       226 IGSLFAG  232 (321)
T ss_pred             echhhcC
Confidence            9987654

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=99.40  E-value=8.3e-12  Score=118.02  Aligned_cols=206  Identities=19%  Similarity=0.162  Sum_probs=144.7

Q ss_pred             CCCCceEEccccCC------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRV------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++||++..      .+....+.|.+.|...+.+-+.+. ++.                     + +.+   ..+
T Consensus        62 ~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~-siE---------------------e-va~---a~~  115 (361)
T cd04736          62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNM-SIE---------------------D-VAR---QAD  115 (361)
T ss_pred             cccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCC-CHH---------------------H-HHh---hcC
Confidence            35678999998742      246677788888877666543321 110                     0 111   112


Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----cccc-----------------------------
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGMG-----------------------------  121 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~G-----------------------------  121 (326)
                      .|..+||.-.+.+......++++. ||..+=++.-+|..-.+.    .++-                             
T Consensus       116 ~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~  195 (361)
T cd04736         116 GDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMP  195 (361)
T ss_pred             CCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccc
Confidence            479999977776666777777776 999999988877643221    1110                             


Q ss_pred             ----------cc-------c--cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC
Q 020428          122 ----------AA-------L--LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA  182 (326)
Q Consensus       122 ----------~~-------l--~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~  182 (326)
                                ..       +  .-++.+.-+.++.+++.++.|+.+|-=      ...+-++.+.+.|+|+|.|++....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV------~~~eda~~a~~~G~d~I~VSnhGGr  269 (361)
T cd04736         196 QLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI------VTAEDAKRCIELGADGVILSNHGGR  269 (361)
T ss_pred             cccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecC------CCHHHHHHHHHCCcCEEEECCCCcC
Confidence                      00       0  012233345788899999999999952      2345688889999999999765444


Q ss_pred             CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       183 ~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +....++..+.+.++++.+++|||+.|||++..|+.+.+ ..||++|++||+++..-.
T Consensus       270 qld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KAL-aLGA~aV~iGr~~l~~la  326 (361)
T cd04736         270 QLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKAL-ALGANAVLLGRATLYGLA  326 (361)
T ss_pred             CCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHHHHH
Confidence            444456678999999998899999999999999999999 699999999999886544

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02979 glycolate oxidase

Probab=99.39  E-value=2.7e-11  Score=113.94  Aligned_cols=205  Identities=19%  Similarity=0.180  Sum_probs=143.1

Q ss_pred             CCCCceEEccccCC------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRV------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++||++..      .+....+.|.+.|.-.+.+-+. ..++.                     + +..   ..+
T Consensus        67 ~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~s-s~slE---------------------e-Ia~---a~~  120 (366)
T PLN02979         67 KISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWA-TSSVE---------------------E-VAS---TGP  120 (366)
T ss_pred             ccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCc-CCCHH---------------------H-HHh---ccC
Confidence            35679999999842      2356677788877766654322 12211                     1 111   112


Q ss_pred             CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccc-------ccc------------------
Q 020428           76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMG-------AAL------------------  124 (326)
Q Consensus        76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G-------~~l------------------  124 (326)
                      .+..+||. ..|.+...+..+++++ |+..+=+...+|..-.+    +.++.       ..+                  
T Consensus       121 ~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (366)
T PLN02979        121 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS  200 (366)
T ss_pred             CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHH
Confidence            37899995 5677777777788876 99999888888875222    11110       000                  


Q ss_pred             ----cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428          125 ----LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA  200 (326)
Q Consensus       125 ----~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~  200 (326)
                          .-+|...=+-++.+++.++.||.+|-=.      ..+-|+.+.++|+|+|.|.+....+....++..+.+.++++.
T Consensus       201 ~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~  274 (366)
T PLN02979        201 YVAGQIDRTLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA  274 (366)
T ss_pred             HHhhcCCCCCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHH
Confidence                0012222255788899999999999852      356688999999999999877666655556668888888877


Q ss_pred             c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +  ++|||+.|||++..|+.+.+ ..|||+|++||.++..-
T Consensus       275 ~~~~~~Vi~dGGIr~G~Di~KAL-ALGAdaV~iGrp~L~~l  314 (366)
T PLN02979        275 TQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVFSL  314 (366)
T ss_pred             hCCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHHHH
Confidence            5  49999999999999999999 69999999999887543

>TIGR02814 pfaD_fam PfaD family protein

Probab=99.38  E-value=1.7e-11  Score=118.39  Aligned_cols=203  Identities=13%  Similarity=0.083  Sum_probs=123.4

Q ss_pred             CCCCCceEEcccc-CCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcE
Q 020428            1 MDYQNKLVLAPMV-RVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHV   78 (326)
Q Consensus         1 l~l~~~iilAPM~-g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   78 (326)
                      +.++.||++|||+ |+|+..+...+.+.|. |.+-+...+++.+....+..                  -...+ .++|+
T Consensus        15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~i------------------r~~~~-~~p~f   75 (444)
T TIGR02814        15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRI------------------QQALP-GGPAY   75 (444)
T ss_pred             hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHH------------------HHhcC-CCCce
Confidence            3578899999999 7999999999999975 88877777666553211110                  00011 12349


Q ss_pred             EEEECCCC--HHHHHHHHHHhh-cCCCEEEEccC---CCccccccccccc------------ccc---CChHHHHH----
Q 020428           79 VFQMGTSD--AVRALTAAKMVC-KDVAAIDINMG---CPKSFSVSGGMGA------------ALL---SKPELIHD----  133 (326)
Q Consensus        79 ~vQl~g~~--~~~~~~aa~~~~-~~~d~idlN~g---cP~~~~~~~~~G~------------~l~---~~p~~~~~----  133 (326)
                      .|||+.+.  ++.-.+..+.+. .++..|+...+   .|.. +.-...|.            .++   .+|+.+..    
T Consensus        76 GVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p  154 (444)
T TIGR02814        76 GVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSP  154 (444)
T ss_pred             EEEecccCCCcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhhccccccccccccccceEEEecCCHHHHHHhcCC
Confidence            99998653  322223334443 38888887633   3321 11011110            111   12332221    


Q ss_pred             ----HHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHH---HHhc----
Q 020428          134 ----ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADI---VAAL----  201 (326)
Q Consensus       134 ----iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i---~~~~----  201 (326)
                          +++.+.+. ++             -+.+.|..+++.| +|.|++. ....++......+.++..|   ++.+    
T Consensus       155 ~p~~~v~~L~~~-G~-------------it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~  219 (444)
T TIGR02814       155 APAHILQKLLAE-GR-------------ITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRY  219 (444)
T ss_pred             CcHHHHHHHHHc-CC-------------CCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcc
Confidence                22222221 10             1456677888888 5889886 5554443333345555555   3445    


Q ss_pred             ----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          202 ----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       202 ----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                          ++||++.|||.|++++..++ ..|||+|++|+.++..+
T Consensus       220 ~y~~~VpViAAGGI~t~~~vaAAl-aLGAdgV~~GT~flat~  260 (444)
T TIGR02814       220 GYRKPIRVGAAGGIGTPEAAAAAF-MLGADFIVTGSVNQCTV  260 (444)
T ss_pred             cCCCCceEEEeCCCCCHHHHHHHH-HcCCcEEEeccHHHhCc
Confidence                79999999999999999999 69999999999988754

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=99.34  E-value=4e-11  Score=113.55  Aligned_cols=205  Identities=18%  Similarity=0.166  Sum_probs=142.7

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++||++...      +....+.|.+.|...+.+-+.+ .++.                     + +.   ...+
T Consensus        68 ~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss-~slE---------------------e-va---~~~~  121 (367)
T PLN02493         68 KISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWAT-SSVE---------------------E-VA---STGP  121 (367)
T ss_pred             cccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCccc-CCHH---------------------H-HH---hcCC
Confidence            356799999987532      3566778888787666544222 1111                     1 11   1112


Q ss_pred             CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccc-------ccc------------------
Q 020428           76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMG-------AAL------------------  124 (326)
Q Consensus        76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G-------~~l------------------  124 (326)
                      .|..+||. ..|.+...+..+++++ ||..+=+...+|..-.+    +.++-       ..+                  
T Consensus       122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (367)
T PLN02493        122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS  201 (367)
T ss_pred             CCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHH
Confidence            47899995 5677777777888876 99999888888775222    11110       000                  


Q ss_pred             ----cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428          125 ----LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA  200 (326)
Q Consensus       125 ----~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~  200 (326)
                          .-++.+-=+-++.+++.++.||.+|-=.      ..+-++.+.++|+|+|.|.+....+....++..+.+.++++.
T Consensus       202 ~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~a  275 (367)
T PLN02493        202 YVAGQIDRTLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA  275 (367)
T ss_pred             HHhhcCCCCCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHH
Confidence                0012222244788888889999999853      356688999999999999877666655556668888888887


Q ss_pred             c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +  ++|||+.|||++..|+.+.+ ..||++|+|||.++..-
T Consensus       276 v~~~~~vi~dGGIr~G~Dv~KAL-ALGA~aV~iGr~~l~~l  315 (367)
T PLN02493        276 TQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVFSL  315 (367)
T ss_pred             hCCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHHHH
Confidence            6  59999999999999999999 68999999999988643

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=99.33  E-value=5.3e-11  Score=113.39  Aligned_cols=206  Identities=17%  Similarity=0.151  Sum_probs=139.6

Q ss_pred             CCCCceEEccccCC------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRV------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++||++..      .+....+.|.+.|...+.+.+.+ .++.                     + +.   ...+
T Consensus        68 ~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss-~slE---------------------e-ia---~~~~  121 (381)
T PRK11197         68 KLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSV-CPIE---------------------E-VA---PAIK  121 (381)
T ss_pred             ccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCc-CCHH---------------------H-HH---hccC
Confidence            35679999999842      34667778888887666554222 1111                     1 11   1122


Q ss_pred             CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----ccccccc---------ccCC-------------
Q 020428           76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGMGAA---------LLSK-------------  127 (326)
Q Consensus        76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~G~~---------l~~~-------------  127 (326)
                      .|..+||. -.|.+...+..++++. ||..+=+...+|..-.+    +.++-.-         .+.+             
T Consensus       122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~  201 (381)
T PRK11197        122 RPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRP  201 (381)
T ss_pred             CCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCC
Confidence            47999994 5577777788888876 99999998888863322    1111000         0000             


Q ss_pred             ----------------hHH------------HHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec
Q 020428          128 ----------------PEL------------IHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       128 ----------------p~~------------~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                                      .++            -=+-++.+++.++.||.+|-=      .+.+-|+.+.+.|+|+|.|.+.
T Consensus       202 ~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV------~s~~dA~~a~~~Gvd~I~Vs~h  275 (381)
T PRK11197        202 HDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI------LDPEDARDAVRFGADGIVVSNH  275 (381)
T ss_pred             CcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec------CCHHHHHHHHhCCCCEEEECCC
Confidence                            000            012277888888999999974      3356688899999999999765


Q ss_pred             ccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          180 KVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       180 ~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ...+....+...+.+.++.+.+  ++|||+.|||++..|+.+.+ ..||++|++||.++.--.
T Consensus       276 GGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KAL-aLGA~~V~iGr~~l~~la  337 (381)
T PRK11197        276 GGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMI-ALGADTVLLGRAFVYALA  337 (381)
T ss_pred             CCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHH-HcCcCceeEhHHHHHHHH
Confidence            4444333455577788887766  69999999999999999999 699999999999876543

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=99.31  E-value=6.8e-11  Score=112.81  Aligned_cols=204  Identities=20%  Similarity=0.159  Sum_probs=139.6

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+.+||++...      +....+.|.+.|.-.+.+-+.+ .++.                     + +...  ..+
T Consensus        83 ~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss-~slE---------------------e-Ia~~--~~~  137 (383)
T cd03332          83 TLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASS-SSIE---------------------D-VAAA--AGD  137 (383)
T ss_pred             cccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCC-CCHH---------------------H-HHhh--cCC
Confidence            456799999998532      4566777888787666554332 1110                     0 1111  012


Q ss_pred             CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----ccccccc--------c----------------
Q 020428           76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGMGAAL--------L----------------  125 (326)
Q Consensus        76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~G~~l--------~----------------  125 (326)
                      .|..+||.- .|.+...+..+++++ |+..+=|....|..-.+.    .++....        +                
T Consensus       138 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (383)
T cd03332         138 APRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGED  217 (383)
T ss_pred             CCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCC
Confidence            378999954 577777777778776 999888876666532211    1110000        0                


Q ss_pred             ------------------CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC
Q 020428          126 ------------------SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD  187 (326)
Q Consensus       126 ------------------~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~  187 (326)
                                        -+|.+-=+-++.+++.++.||.+|-=      ...+-++.+.+.|+|+|+|++....+...+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV------~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~  291 (383)
T cd03332         218 PEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI------LHPDDARRAVEAGVDGVVVSNHGGRQVDGS  291 (383)
T ss_pred             cccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecC------CCHHHHHHHHHCCCCEEEEcCCCCcCCCCC
Confidence                              01222225677788888999999932      234567888899999999986655555556


Q ss_pred             cCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 PAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 ~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++..+.+.++++.+  ++||++.|||++..|+.+.+ ..|||+|++||.++.
T Consensus       292 ~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KAL-aLGA~~v~iGr~~l~  342 (383)
T cd03332         292 IAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKAL-ALGAKAVLIGRPYAY  342 (383)
T ss_pred             cCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHH
Confidence            77788999998877  59999999999999999999 699999999999885

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=99.31  E-value=3.3e-11  Score=114.59  Aligned_cols=205  Identities=21%  Similarity=0.258  Sum_probs=137.7

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|+++|||.+.+      +....+.|.+.|...+.+-+.+. .+.                     + +.   ....
T Consensus        56 ~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~-~~e---------------------~-ia---~~~~  109 (356)
T PF01070_consen   56 KLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSA-SLE---------------------E-IA---AASG  109 (356)
T ss_dssp             EESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSS-CHH---------------------H-HH---HHCT
T ss_pred             cCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccC-CHH---------------------H-HH---hhcc
Confidence            356799999998632      35677788887865554332211 110                     0 11   1112


Q ss_pred             CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----ccc--------------------c--------
Q 020428           76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGM--------------------G--------  121 (326)
Q Consensus        76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~--------------------G--------  121 (326)
                      .|..+||. -.+.+...+..+++++ |++.+-++.-+|....+.    .++                    |        
T Consensus       110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~  189 (356)
T PF01070_consen  110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE  189 (356)
T ss_dssp             SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred             CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence            58999994 4577777888888876 999888877666521110    000                    0        


Q ss_pred             -------c----cc---cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC
Q 020428          122 -------A----AL---LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD  187 (326)
Q Consensus       122 -------~----~l---~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~  187 (326)
                             .    .+   .-++...-+-++.+++.++.||.+|-=      -..+-++.+.+.|+++|.|.+.-..+...+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv------~~~~da~~~~~~G~~~i~vs~hGGr~~d~~  263 (356)
T PF01070_consen  190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV------LSPEDAKRAVDAGVDGIDVSNHGGRQLDWG  263 (356)
T ss_dssp             CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHHHHHHHTT-SEEEEESGTGTSSTTS
T ss_pred             cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec------ccHHHHHHHHhcCCCEEEecCCCcccCccc
Confidence                   0    00   013334445688889999999999985      234558899999999999987766666667


Q ss_pred             cCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          188 PAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       188 ~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      ++..+.+.++++.+  ++|||+.|||++..|+.+.+ ..||++|.+||.++..-
T Consensus       264 ~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kal-aLGA~~v~igr~~l~~l  316 (356)
T PF01070_consen  264 PPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKAL-ALGADAVGIGRPFLYAL  316 (356)
T ss_dssp             -BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHH-HTT-SEEEESHHHHHHH
T ss_pred             cccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHH-HcCCCeEEEccHHHHHH
Confidence            88889999999877  59999999999999999999 69999999999877543

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.29  E-value=9.6e-12  Score=113.27  Aligned_cols=86  Identities=24%  Similarity=0.365  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++++.++++|++.|++|++++.+... +.+++.++++++.+++||+++|||+|.+|+++++ ..||++|++||+++
T Consensus        30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l-~~Ga~~Viigt~~l  107 (253)
T PRK02083         30 GDPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLL-RAGADKVSINSAAV  107 (253)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHH-HcCCCEEEEChhHh
Confidence            478899999999999999999999876554 6799999999999999999999999999999999 49999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||+++.+
T Consensus       108 ~~p~~~~e  115 (253)
T PRK02083        108 ANPELISE  115 (253)
T ss_pred             hCcHHHHH
Confidence            99998876

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=99.28  E-value=1.2e-10  Score=105.30  Aligned_cols=143  Identities=18%  Similarity=0.212  Sum_probs=112.2

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCC----hHHHHHHHHHH-hhcccCcEEEEec
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK----PELIHDILTML-KRNLDVPVTCKIR  151 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~----p~~~~~iv~~v-~~~~~~pv~vK~r  151 (326)
                      ++-+|++|.=- . .++.+++..|++-|-||              +...++    |+++.++++.. .+.+-+.+.+|..
T Consensus        83 ~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~  146 (262)
T PLN02446         83 PGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKK  146 (262)
T ss_pred             CCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEec
Confidence            47789976543 2 45555565699988875              556666    99999999998 4554444555511


Q ss_pred             -----C---CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428          152 -----L---LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       152 -----~---g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~  220 (326)
                           .   ||.   .-++.+++..+.+.|++.|.++...+++...|+ |+++++++++.+++|||++|||.|.+|+.++
T Consensus       147 ~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~-d~el~~~l~~~~~ipVIASGGv~sleDi~~L  225 (262)
T PLN02446        147 DGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGI-DEELVALLGEHSPIPVTYAGGVRSLDDLERV  225 (262)
T ss_pred             CCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHH
Confidence                 1   453   346888899999999999999999999887665 8999999999999999999999999999999


Q ss_pred             HHhc-CCcEEEeccchh
Q 020428          221 KTAA-GASSVMAARGAL  236 (326)
Q Consensus       221 l~~~-Gad~VmiGr~~l  236 (326)
                      .+.. |+.+|.+|++++
T Consensus       226 ~~~g~g~~gvIvGkAl~  242 (262)
T PLN02446        226 KVAGGGRVDVTVGSALD  242 (262)
T ss_pred             HHcCCCCEEEEEEeeHH
Confidence            8532 689999999984

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.27  E-value=1.5e-11  Score=111.38  Aligned_cols=86  Identities=22%  Similarity=0.339  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++++.++++|++.|+++.++..+ ..++.+++.++++++.+++||+++|||+|.+|+++++ ..||++|++||+++
T Consensus        27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~-~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l-~~G~~~v~ig~~~~  104 (243)
T cd04731          27 GDPVELAKRYNEQGADELVFLDITASS-EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLL-RAGADKVSINSAAV  104 (243)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEcCCccc-ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCceEEECchhh
Confidence            378999999999999999999998754 3457799999999999999999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||+++.+
T Consensus       105 ~~p~~~~~  112 (243)
T cd04731         105 ENPELIRE  112 (243)
T ss_pred             hChHHHHH
Confidence            99998775

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]

Probab=99.25  E-value=5.5e-11  Score=111.97  Aligned_cols=157  Identities=12%  Similarity=0.111  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhhc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC---
Q 020428           88 VRALTAAKMVCK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL---  152 (326)
Q Consensus        88 ~~~~~aa~~~~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~---  152 (326)
                      +.+..||+.+.+ |||+||||..         .|..+.+.++||+++.++-+++.|++++|++.++  .+..+-.+.   
T Consensus       174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~f  253 (400)
T KOG0134|consen  174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEF  253 (400)
T ss_pred             HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhh
Confidence            567788888855 9999999965         6888999999999999999999999999999872  333333331   


Q ss_pred             ---CCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CCCCc----CCHHHHHHHHHhcCCcEE-EeCCCCCHHHH
Q 020428          153 ---LKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RPRDP----AKWGEIADIVAALSIPVI-ANGDVFEYDDF  217 (326)
Q Consensus       153 ---g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~~~~----~~~~~i~~i~~~~~iPVi-~nGgI~s~~d~  217 (326)
                         +++.++...++..+++.|+|.+-+.|.+...       +.+-+    ...+....++...+.||| ++|+.+|.+.+
T Consensus       254 q~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~  333 (400)
T KOG0134|consen  254 QDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREAM  333 (400)
T ss_pred             hhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHHH
Confidence               4566788899999999999955554443321       11111    123445566666778877 56789999999


Q ss_pred             HHHHHhcCCcEEEeccchhcCcccccc
Q 020428          218 QRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       218 ~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      .++++....|+|..||.++.||+|.++
T Consensus       334 ~eav~~~~T~~ig~GR~f~anPDLp~r  360 (400)
T KOG0134|consen  334 VEAVKSGRTDLIGYGRPFLANPDLPKR  360 (400)
T ss_pred             HHHHhcCCceeEEecchhccCCchhHH
Confidence            999976667899999999999999987

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=99.24  E-value=1.5e-10  Score=104.59  Aligned_cols=145  Identities=19%  Similarity=0.132  Sum_probs=110.8

Q ss_pred             cEEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe----
Q 020428           77 HVVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI----  150 (326)
Q Consensus        77 p~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~----  150 (326)
                      ++-+|++|  .+.+++..   .+..|++-|-+|              +..+++|+++.++.+...+.+-+.+.+|.    
T Consensus        74 ~~~v~vgGGIrs~e~~~~---~l~~Ga~~vvig--------------T~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~  136 (243)
T TIGR01919        74 VVVEELSGGRRDDSSLRA---ALTGGRARVNGG--------------TAALENPWWAAAVIRYGGDIVAVGLDVLEDGEW  136 (243)
T ss_pred             CCCEEEcCCCCCHHHHHH---HHHcCCCEEEEC--------------chhhCCHHHHHHHHHHccccEEEEEEEecCCce
Confidence            45678865  35554443   333477777653              66778999999998887554433334441    


Q ss_pred             -cC---CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH--H
Q 020428          151 -RL---LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIK--T  222 (326)
Q Consensus       151 -r~---g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l--~  222 (326)
                       ..   ||.  ..+..++++.+++.|+..|.++...+++..+|+ |+++++++++.+++|||++|||.|.+|+.++.  .
T Consensus       137 ~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~-d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~  215 (243)
T TIGR01919       137 HTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGP-NELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLD  215 (243)
T ss_pred             EEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCc-CHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhc
Confidence             11   443  346889999999999999999999999887665 89999999999999999999999999999874  2


Q ss_pred             hcCCcEEEeccchhcCc
Q 020428          223 AAGASSVMAARGALWNA  239 (326)
Q Consensus       223 ~~Gad~VmiGr~~l~~P  239 (326)
                      ..|++||++|++++.+-
T Consensus       216 ~~Gv~gvivg~Al~~g~  232 (243)
T TIGR01919       216 EGGVSVAIGGKLLYARF  232 (243)
T ss_pred             cCCeeEEEEhHHHHcCC
Confidence            45999999999988754

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=99.22  E-value=1.2e-10  Score=104.48  Aligned_cols=145  Identities=20%  Similarity=0.302  Sum_probs=108.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEec----
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIR----  151 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r----  151 (326)
                      ++-+|++|. .....++.+++..|++.+=|+              +..+++|+++.++.+..-+ .+-+.+.+|-.    
T Consensus        73 ~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~  137 (229)
T PF00977_consen   73 GIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKVA  137 (229)
T ss_dssp             SSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred             CccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence            466788653 123334444555578876654              6788999999999999866 44344444443    


Q ss_pred             C-CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          152 L-LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       152 ~-g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      . +|..   .+..++++.+++.|+..+.++...+++...|+ |++.++++++.+++|||++|||.|.+|+.++. ..|++
T Consensus       138 ~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~-~~G~~  215 (229)
T PF00977_consen  138 TNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGP-DLELLKQLAEAVNIPVIASGGVRSLEDLRELK-KAGID  215 (229)
T ss_dssp             ETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH-HTTEC
T ss_pred             ecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCC-CHHHHHHHHHHcCCCEEEecCCCCHHHHHHHH-HCCCc
Confidence            1 4543   47899999999999999999999999887765 89999999999999999999999999999999 79999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      +|++|++++.+
T Consensus       216 gvivg~al~~g  226 (229)
T PF00977_consen  216 GVIVGSALHEG  226 (229)
T ss_dssp             EEEESHHHHTT
T ss_pred             EEEEehHhhCC
Confidence            99999998754

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=99.21  E-value=2.2e-09  Score=95.25  Aligned_cols=198  Identities=16%  Similarity=0.176  Sum_probs=128.4

Q ss_pred             CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +++.|+++.- ..|.+ ..++...+..|+.++..-   .+..   .......-+.            ++..+..+..+..
T Consensus         7 ~~~SRl~~Gt-gky~s~~~~~~ai~aSg~~ivTva---~rR~---~~~~~~~~~~------------~~~i~~~~~~~lp   67 (248)
T cd04728           7 TFSSRLLLGT-GKYPSPAIMKEAIEASGAEIVTVA---LRRV---NIGDPGGESF------------LDLLDKSGYTLLP   67 (248)
T ss_pred             EeecceEEec-CCCCCHHHHHHHHHHhCCCEEEEE---EEec---ccCCCCcchH------------HhhccccCCEECC
Confidence            4667777754 45644 455667777798877432   1111   0000001111            2222222223334


Q ss_pred             EE-CCCCHHHHHHHHHHhhc--CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           81 QM-GTSDAVRALTAAKMVCK--DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        81 Ql-~g~~~~~~~~aa~~~~~--~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      |- +..+.++..+.|+++.+  +-++|-|-. |-|          -.|+.|+....+-.+.+.+. +.-+.-=+.     
T Consensus        68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~-----  131 (248)
T cd04728          68 NTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPYCT-----  131 (248)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEEeC-----
Confidence            44 34678999999999887  557776643 112          24677776665555555332 333331221     


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                       +...+++.++++|++.|..+|...... .+..+.+.++.+++..++|||+.|||.|++|+.+++ +.|||+|++|+|+.
T Consensus       132 -dd~~~ar~l~~~G~~~vmPlg~pIGsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am-elGAdgVlV~SAIt  208 (248)
T cd04728         132 -DDPVLAKRLEDAGCAAVMPLGSPIGSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAVLLNTAIA  208 (248)
T ss_pred             -CCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEEChHhc
Confidence             446789999999999997776665544 466789999999998899999999999999999999 69999999999976


Q ss_pred             c
Q 020428          237 W  237 (326)
Q Consensus       237 ~  237 (326)
                      .
T Consensus       209 ~  209 (248)
T cd04728         209 K  209 (248)
T ss_pred             C
Confidence            3

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.18  E-value=4.2e-10  Score=101.54  Aligned_cols=140  Identities=14%  Similarity=0.159  Sum_probs=105.6

Q ss_pred             EEEECCC--CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428           79 VFQMGTS--DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL----  152 (326)
Q Consensus        79 ~vQl~g~--~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~----  152 (326)
                      -+|++|.  +.+++.+   .+..|++-|-||              +..+++|+++.++ .+..++  +-+++-.+-    
T Consensus        75 ~v~vGGGIrs~e~~~~---~l~~Ga~rvvig--------------T~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~  134 (241)
T PRK14114         75 HIQIGGGIRSLDYAEK---LRKLGYRRQIVS--------------SKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA  134 (241)
T ss_pred             cEEEecCCCCHHHHHH---HHHCCCCEEEEC--------------chhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence            3588653  4444443   343477776553              6678899999998 444333  334444332    


Q ss_pred             --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh----
Q 020428          153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA----  223 (326)
Q Consensus       153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~----  223 (326)
                        ||.   .-++.++++.+++.|+..|.++...+++..+|+ |++.++++++.+++|||++|||.|.+|+.++.+.    
T Consensus       135 ~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~-d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~  213 (241)
T PRK14114        135 FKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRET  213 (241)
T ss_pred             eCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCc-CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhccccc
Confidence              343   235899999999999999999999998887665 8999999999999999999999999999999853    


Q ss_pred             cC-CcEEEeccchhcCc
Q 020428          224 AG-ASSVMAARGALWNA  239 (326)
Q Consensus       224 ~G-ad~VmiGr~~l~~P  239 (326)
                      .| ++||.+|++++.+-
T Consensus       214 ~g~v~gvivg~Al~~g~  230 (241)
T PRK14114        214 NGLLKGVIVGRAFLEGI  230 (241)
T ss_pred             CCcEEEEEEehHHHCCC
Confidence            15 99999999987653

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.17  E-value=5.3e-10  Score=99.63  Aligned_cols=120  Identities=18%  Similarity=0.286  Sum_probs=91.2

Q ss_pred             cCCCEEEEccCCCccccccccccccccCCh--HHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE
Q 020428           99 KDVAAIDINMGCPKSFSVSGGMGAALLSKP--ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV  176 (326)
Q Consensus        99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p--~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v  176 (326)
                      .|++.|-++...              ..+|  +.+.++++++++..++|+.+.+.       +.+.+..+.+.|+|++.+
T Consensus        91 aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~~a~~~G~d~i~~  149 (219)
T cd04729          91 AGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIS-------TLEEALNAAKLGFDIIGT  149 (219)
T ss_pred             cCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECC-------CHHHHHHHHHcCCCEEEc
Confidence            489988876532              1123  26778888887765688888653       234568888899999965


Q ss_pred             --eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          177 --HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       177 --h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                        +|++.........+++.++++++.+++||+++|||.|++++.+++ ..|||+|++|++++...+
T Consensus       150 ~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l-~~GadgV~vGsal~~~~~  214 (219)
T cd04729         150 TLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKAL-ELGADAVVVGSAITRPEH  214 (219)
T ss_pred             cCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEchHHhChHh
Confidence              466554433345689999999999999999999999999999999 589999999999776443

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.17  E-value=8.9e-10  Score=99.12  Aligned_cols=140  Identities=12%  Similarity=0.214  Sum_probs=107.3

Q ss_pred             EEEECCC--CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec---C-
Q 020428           79 VFQMGTS--DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR---L-  152 (326)
Q Consensus        79 ~vQl~g~--~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r---~-  152 (326)
                      =+|++|.  +.++.   .+.+..|++-+-|              |+..+++|+++.++.+...+++-+.+.+|-.   . 
T Consensus        78 pi~vGGGIrs~e~v---~~~l~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~  140 (234)
T PRK13587         78 DIEVGGGIRTKSQI---MDYFAAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVN  140 (234)
T ss_pred             eEEEcCCcCCHHHH---HHHHHCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEec
Confidence            3788653  44443   3344447777655              4677889999999988885443222333221   1 


Q ss_pred             CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          153 LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       153 g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +|.   ..+..++++.+++.|+..+.++...+++...|+ |+++++++.+.+++||++.|||+|.+|+.+++ ..|+++|
T Consensus       141 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~v  218 (234)
T PRK13587        141 GWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGP-NFELTGQLVKATTIPVIASGGIRHQQDIQRLA-SLNVHAA  218 (234)
T ss_pred             CCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCcc-CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEE
Confidence            343   235799999999999999999999888877655 89999999999999999999999999999999 5899999


Q ss_pred             Eeccchhc
Q 020428          230 MAARGALW  237 (326)
Q Consensus       230 miGr~~l~  237 (326)
                      .+|++++.
T Consensus       219 ivG~a~~~  226 (234)
T PRK13587        219 IIGKAAHQ  226 (234)
T ss_pred             EEhHHHHh
Confidence            99999886

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=99.16  E-value=9.6e-11  Score=106.78  Aligned_cols=86  Identities=21%  Similarity=0.323  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|++.|+++..++.+. ..+.+++.++++++.+++||++.|||+|.+|+++++ ..||+.|++||+++
T Consensus        30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~-~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~-~~Ga~~vivgt~~~  107 (254)
T TIGR00735        30 GDPVELAQRYDEEGADELVFLDITASSE-GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLL-RAGADKVSINTAAV  107 (254)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCcccc-cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChhHh
Confidence            3788999999999999999999987754 456799999999999999999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||+++.+
T Consensus       108 ~~p~~~~~  115 (254)
T TIGR00735       108 KNPELIYE  115 (254)
T ss_pred             hChHHHHH
Confidence            99998775

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=99.15  E-value=8.4e-10  Score=99.80  Aligned_cols=133  Identities=20%  Similarity=0.313  Sum_probs=94.7

Q ss_pred             ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc--------------
Q 020428          116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV--------------  181 (326)
Q Consensus       116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~--------------  181 (326)
                      .+...|-+-+++|+.+.+|    ++.+++||.-|+|.|.     ...++.|+++|+|.|.-+.|.+              
T Consensus        44 ~r~~ggv~R~~~p~~I~~I----~~~V~iPVig~~kigh-----~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~K~~f~  114 (287)
T TIGR00343        44 IRASGGVARMSDPKMIKEI----MDAVSIPVMAKVRIGH-----FVEAQILEALGVDYIDESEVLTPADWTFHIDKKKFK  114 (287)
T ss_pred             hHhcCCeeecCCHHHHHHH----HHhCCCCEEEEeeccH-----HHHHHHHHHcCCCEEEccCCCCcHHHHHHHHHHHcC
Confidence            4566788899999876555    5566999999999764     4456677777777775332221              


Q ss_pred             ---------------------------CCCCCC-----------------------------------cCCHHHHHHHHH
Q 020428          182 ---------------------------ADRPRD-----------------------------------PAKWGEIADIVA  199 (326)
Q Consensus       182 ---------------------------~~~~~~-----------------------------------~~~~~~i~~i~~  199 (326)
                                                 ...|++                                   .+++++++++++
T Consensus       115 vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~  194 (287)
T TIGR00343       115 VPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLK  194 (287)
T ss_pred             CCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHH
Confidence                                       111111                                   357899999999


Q ss_pred             hcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHHhhccC
Q 020428          200 ALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENN  267 (326)
Q Consensus       200 ~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~  267 (326)
                      ..++||+  +.|||.|++++..++ +.|||+|++|+++...+         .+....+.|.+....|..+
T Consensus       195 ~~~iPVV~fAiGGI~TPedAa~~m-elGAdGVaVGSaI~ks~---------dP~~~akafv~ai~~~~~~  254 (287)
T TIGR00343       195 LGKLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSS---------NPEKLAKAIVEATTHYDNP  254 (287)
T ss_pred             hCCCCEEEeccCCCCCHHHHHHHH-HcCCCEEEEhHHhhcCC---------CHHHHHHHHHHHHHHcCCH
Confidence            8899998  999999999999999 59999999999976422         1334444555555555443

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=99.13  E-value=3.3e-09  Score=99.71  Aligned_cols=134  Identities=15%  Similarity=0.203  Sum_probs=113.3

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL  152 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~  152 (326)
                      ..|+..|+++.+++++.+.++.+.+ ||+.|.+++|.                +++...+.++++++.+ ++++.++.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~n~  186 (316)
T cd03319         123 PLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDANQ  186 (316)
T ss_pred             CceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeCCC
Confidence            4577889988899988887776655 99999999863                3455678888888877 4789999998


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.+++.++++.+++.|+.+|       ++.. .+.+++.++++++.+++||++++.+.+.+++.++++..++|.|++-
T Consensus       187 ~~~~~~A~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~  258 (316)
T cd03319         187 GWTPEEAVELLRELAELGVELI-------EQPV-PAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIK  258 (316)
T ss_pred             CcCHHHHHHHHHHHHhcCCCEE-------ECCC-CCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence            9999999999999999999888       3333 3568999999999999999999999999999999987889999875

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=99.10  E-value=9.2e-09  Score=91.49  Aligned_cols=197  Identities=16%  Similarity=0.163  Sum_probs=126.6

Q ss_pred             CCCCceEEccccCCCCH-HHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTL-PFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~-~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +++.|+++.- ..|.+. .++......|+.++..-   .....-..    ..-+            +++..+..+..+..
T Consensus         8 ~~~SRl~~Gt-gky~s~~~~~~ai~asg~~ivTva---lrR~~~~~----~~~~------------~~~~i~~~~~~~lp   67 (250)
T PRK00208          8 TFSSRLLLGT-GKYPSPQVMQEAIEASGAEIVTVA---LRRVNLGQ----GGDN------------LLDLLPPLGVTLLP   67 (250)
T ss_pred             EeeccceEec-CCCCCHHHHHHHHHHhCCCeEEEE---EEeecCCC----Ccch------------HHhhccccCCEECC
Confidence            4567777753 456554 55677777798877432   11110000    0001            12222322333444


Q ss_pred             EE-CCCCHHHHHHHHHHhhc--CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           81 QM-GTSDAVRALTAAKMVCK--DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        81 Ql-~g~~~~~~~~aa~~~~~--~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      |- ++.+.++..+.|+++.+  +-++|-|-. |-|          -.++.|+....+-.+.+.+. +.-+.-=+.     
T Consensus        68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~llpd~~~tv~aa~~L~~~-Gf~vlpyc~-----  131 (250)
T PRK00208         68 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFVVLPYCT-----  131 (250)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCC----------CCCCcCHHHHHHHHHHHHHC-CCEEEEEeC-----
Confidence            44 35688999999999887  557776643 112          23556665555544444322 333321221     


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                       +...+++.++++|++.|-.+|...... .+..+.+.++.+++..++|||..|||.+++|+.+++ +.|||+|++|+|+.
T Consensus       132 -~d~~~ak~l~~~G~~~vmPlg~pIGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am-elGAdgVlV~SAIt  208 (250)
T PRK00208        132 -DDPVLAKRLEEAGCAAVMPLGAPIGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM-ELGADAVLLNTAIA  208 (250)
T ss_pred             -CCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEChHhh
Confidence             446789999999999997766655533 466689999999998899999999999999999999 59999999999976


Q ss_pred             c
Q 020428          237 W  237 (326)
Q Consensus       237 ~  237 (326)
                      .
T Consensus       209 k  209 (250)
T PRK00208        209 V  209 (250)
T ss_pred             C
Confidence            3

>cd04732 HisA HisA

Probab=99.09  E-value=3.6e-10  Score=101.52  Aligned_cols=86  Identities=29%  Similarity=0.436  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|+|.++|+.+++... ..+.+++.++++++.+++||+++|||+|++++++++ +.|||.|++|++++
T Consensus        29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~-~~Gad~vvigs~~l  106 (234)
T cd04732          29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLL-DLGVSRVIIGTAAV  106 (234)
T ss_pred             CCHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECchHH
Confidence            4789999999999999999998876422 256789999999999999999999999999999999 59999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|+++.+
T Consensus       107 ~dp~~~~~  114 (234)
T cd04732         107 KNPELVKE  114 (234)
T ss_pred             hChHHHHH
Confidence            99998776

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=99.09  E-value=1.1e-08  Score=95.02  Aligned_cols=191  Identities=13%  Similarity=0.078  Sum_probs=128.1

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++-|++-|.|-.+++..+.....++|. +.+- -+.+.+....             |+.        ...++....+.+
T Consensus        43 ~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iH-k~~~~e~~~~-------------~v~--------~~~~~~~~~~~v  100 (343)
T TIGR01305        43 YSGVPIIAANMDTVGTFEMAAALSQHSIFTAIH-KHYSVDEWKA-------------FAT--------NSSPDCLQNVAV  100 (343)
T ss_pred             eeCCceEecCCCcccCHHHHHHHHHCCCeEEEe-eCCCHHHHHH-------------HHH--------hhcccccceEEE
Confidence            3577999999999999999988888765 4332 2122222111             110        001122223455


Q ss_pred             EECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428           81 QMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD  158 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~  158 (326)
                      .+ |..++++.++.++++.  ++|.|-|....               -+-+.+.+.++.+++.+.-+..+|-..     -
T Consensus       101 sv-G~~~~d~er~~~L~~a~~~~d~iviD~Ah---------------Ghs~~~i~~ik~ir~~~p~~~viaGNV-----~  159 (343)
T TIGR01305       101 SS-GSSDNDLEKMTSILEAVPQLKFICLDVAN---------------GYSEHFVEFVKLVREAFPEHTIMAGNV-----V  159 (343)
T ss_pred             Ee-ccCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHhhCCCCeEEEecc-----c
Confidence            43 5677888888888876  47876664321               134678889999999886556666543     3


Q ss_pred             HHHHHHHHHHcCCcEEEEe------ecccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          159 TVELARRIEKTGVSALAVH------GRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh------~r~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +.+-++.+.++|+|.|.|.      ..|+.....+.+.+..+.++++..   ++|||+-|||++.-|+.+.+ ..|||+|
T Consensus       160 T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KAL-A~GAd~V  238 (343)
T TIGR01305       160 TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAF-GAGADFV  238 (343)
T ss_pred             CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHH-HcCCCEE
Confidence            3466788889999999865      122222223435678887777654   78999999999999999999 6999999


Q ss_pred             Eeccchh
Q 020428          230 MAARGAL  236 (326)
Q Consensus       230 miGr~~l  236 (326)
                      |+|.-+.
T Consensus       239 MlG~llA  245 (343)
T TIGR01305       239 MLGGMFA  245 (343)
T ss_pred             EECHhhh
Confidence            9994433

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.08  E-value=3.3e-09  Score=96.06  Aligned_cols=146  Identities=9%  Similarity=0.071  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHH-----HHHHHHhhcccCcEE--EEecCCCChH
Q 020428           85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH-----DILTMLKRNLDVPVT--CKIRLLKSSQ  157 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~-----~iv~~v~~~~~~pv~--vK~r~g~~~~  157 (326)
                      .+.+++.++++.+.+++|.||||+.||.+.    .-|..+.+.++.+.     ++++++++.+++|+.  +|+..  -..
T Consensus        15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~----adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~--~~~   88 (244)
T PRK13125         15 PNVESFKEFIIGLVELVDILELGIPPKYPK----YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED--YVD   88 (244)
T ss_pred             CCHHHHHHHHHHHHhhCCEEEECCCCCCCC----CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch--hhh
Confidence            578899999998876799999999999884    33555666666666     799999988889974  56654  134


Q ss_pred             HHHHHHHHHHHcCCcEEEEeeccc---C---------------------------------------------CCCCCc-
Q 020428          158 DTVELARRIEKTGVSALAVHGRKV---A---------------------------------------------DRPRDP-  188 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~---~---------------------------------------------~~~~~~-  188 (326)
                      +..++++.+.++|+|+|++|....   +                                             ....+. 
T Consensus        89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~  168 (244)
T PRK13125         89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL  168 (244)
T ss_pred             CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence            566778888889999999884210   0                                             000000 


Q ss_pred             -CC-HHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          189 -AK-WGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       189 -~~-~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                       .+ .+.++++++.. +.||+.-|||.|++++.+++ ..|||++.+|++++.
T Consensus       169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~-~~gaD~vvvGSai~~  219 (244)
T PRK13125        169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDAL-SAGADGVVVGTAFIE  219 (244)
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence             11 34566777766 58999999999999999999 699999999999774

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.08  E-value=3.1e-09  Score=95.63  Aligned_cols=139  Identities=19%  Similarity=0.182  Sum_probs=105.0

Q ss_pred             EEEEECCC--CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--
Q 020428           78 VVFQMGTS--DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--  153 (326)
Q Consensus        78 ~~vQl~g~--~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g--  153 (326)
                      +-+|++|.  +.++.   .+.+..|++-+-||              +..+++ +++.++++...+. .+-+++-.+-+  
T Consensus        79 ~~v~vgGGir~~edv---~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~  139 (233)
T cd04723          79 LGLWVDGGIRSLENA---QEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQL  139 (233)
T ss_pred             CCEEEecCcCCHHHH---HHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCee
Confidence            34677653  43433   33444577766654              556677 8999999888551 23344443333  


Q ss_pred             ---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          154 ---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       154 ---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                         .+..+..++++.+++. ++.+++......+... ..|++.++++.+.+++||++.|||+|.+|+.+++ ..|+++|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~-g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vi  216 (233)
T cd04723         140 LKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQ-GPDLELLERLAARADIPVIAAGGVRSVEDLELLK-KLGASGAL  216 (233)
T ss_pred             ccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCC-CcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEE
Confidence               2345688999999999 9999999988877654 4589999999999999999999999999999999 58999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +|++++.+
T Consensus       217 vGsal~~g  224 (233)
T cd04723         217 VASALHDG  224 (233)
T ss_pred             EehHHHcC
Confidence            99998875

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=99.08  E-value=1.4e-09  Score=102.32  Aligned_cols=200  Identities=21%  Similarity=0.241  Sum_probs=122.1

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++-|++-|||-.+|+..+.....+.|. +.+.-.+...+......+ ....      .+.      ....++.+..+.+
T Consensus        35 ~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~-vK~~------~~~------a~~d~~~~l~V~a  101 (352)
T PF00478_consen   35 TLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKK-VKRY------YPN------ASKDEKGRLLVAA  101 (352)
T ss_dssp             EESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHH-HHTH------HTT------HHBHTTSCBCEEE
T ss_pred             eecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhh-hccc------ccc------ccccccccceEEE
Confidence            4677999999999999999977777764 777766553322211000 0000      000      0001122223444


Q ss_pred             EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCCChHHH
Q 020428           81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLKSSQDT  159 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~~~~~~  159 (326)
                      -++ ..++++.++..+++.|+|.|-|....               -+.+.+.+.++.+++..+ +||.+--=      .+
T Consensus       102 avg-~~~~~~er~~~L~~agvD~ivID~a~---------------g~s~~~~~~ik~ik~~~~~~~viaGNV------~T  159 (352)
T PF00478_consen  102 AVG-TRDDDFERAEALVEAGVDVIVIDSAH---------------GHSEHVIDMIKKIKKKFPDVPVIAGNV------VT  159 (352)
T ss_dssp             EEE-SSTCHHHHHHHHHHTT-SEEEEE-SS---------------TTSHHHHHHHHHHHHHSTTSEEEEEEE-------S
T ss_pred             Eec-CCHHHHHHHHHHHHcCCCEEEccccC---------------ccHHHHHHHHHHHHHhCCCceEEeccc------CC
Confidence            443 34456677777776799977664211               134567788999988874 77776431      35


Q ss_pred             HHHHHHHHHcCCcEEEEe---e---cccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          160 VELARRIEKTGVSALAVH---G---RKVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh---~---r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .+-++.|.++|+|+|.|-   |   -|+.....+.+.+..+.++++   ..++|||+-|||.+.-|+.++| ..|||+||
T Consensus       160 ~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAl-a~GAd~VM  238 (352)
T PF00478_consen  160 YEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKAL-AAGADAVM  238 (352)
T ss_dssp             HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHH-HTT-SEEE
T ss_pred             HHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeee-eeccccee
Confidence            567888999999999873   1   111111224445666655554   4589999999999999999999 69999999


Q ss_pred             eccchhc
Q 020428          231 AARGALW  237 (326)
Q Consensus       231 iGr~~l~  237 (326)
                      +|+-+-.
T Consensus       239 lG~llAg  245 (352)
T PF00478_consen  239 LGSLLAG  245 (352)
T ss_dssp             ESTTTTT
T ss_pred             echhhcc
Confidence            9997765

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.08  E-value=5.4e-09  Score=94.54  Aligned_cols=205  Identities=17%  Similarity=0.168  Sum_probs=128.8

Q ss_pred             CCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCHHHHHH
Q 020428           14 RVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALT   92 (326)
Q Consensus        14 g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~   92 (326)
                      .+++..-..++.+.|+ +...-|-+.++-  +..... ......        +.+......-..|++- +.  .-..+.+
T Consensus        14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~--~~~~~v-~R~~~~--------~~I~~Ik~~V~iPVIG-i~--K~~~~~E   79 (283)
T cd04727          14 DVTNAEQARIAEEAGAVAVMALERVPADI--RAAGGV-ARMADP--------KMIKEIMDAVSIPVMA-KV--RIGHFVE   79 (283)
T ss_pred             EeCCHHHHHHHHHcCceEEeeeccCchhh--hhcCCe-eecCCH--------HHHHHHHHhCCCCeEE-ee--ehhHHHH
Confidence            5788888999999997 444434333221  111000 000000        0011111222345542 22  1222666


Q ss_pred             HHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428           93 AAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS  172 (326)
Q Consensus        93 aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d  172 (326)
                      +-.+.+.|+|.||    |--            -.+|  +.+++..++...+.|+.+-++       +++.+....+.|+|
T Consensus        80 a~~L~eaGvDiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~s-------tleEal~a~~~Gad  134 (283)
T cd04727          80 AQILEALGVDMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGAR-------NLGEALRRISEGAA  134 (283)
T ss_pred             HHHHHHcCCCEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCC-------CHHHHHHHHHCCCC
Confidence            6555555999997    211            1123  577888888877999998885       46678888899999


Q ss_pred             EEEEe--ecccC------------------CCC----------CCcCCHHHHHHHHHhcCCcEE--EeCCCCCHHHHHHH
Q 020428          173 ALAVH--GRKVA------------------DRP----------RDPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRI  220 (326)
Q Consensus       173 ~i~vh--~r~~~------------------~~~----------~~~~~~~~i~~i~~~~~iPVi--~nGgI~s~~d~~~~  220 (326)
                      .|--+  |.|..                  ..|          ...++|+.++++++.+++||+  +.|||.|++++.++
T Consensus       135 ~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v  214 (283)
T cd04727         135 MIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALM  214 (283)
T ss_pred             EEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHH
Confidence            99644  34443                  111          124689999999999999997  99999999999999


Q ss_pred             HHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHHhhccC
Q 020428          221 KTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENN  267 (326)
Q Consensus       221 l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~  267 (326)
                      + +.||++|++|++++..+         .+....++|.+....|..+
T Consensus       215 ~-e~GAdgVaVGSAI~~a~---------dP~~~tk~f~~ai~~~~~~  251 (283)
T cd04727         215 M-QLGADGVFVGSGIFKSE---------NPEKRARAIVEAVTHYDDP  251 (283)
T ss_pred             H-HcCCCEEEEcHHhhcCC---------CHHHHHHHHHHHHHhcCCH
Confidence            9 59999999999977533         1334444555555555443

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.06  E-value=2.3e-09  Score=95.65  Aligned_cols=101  Identities=16%  Similarity=0.262  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEe--ecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          129 ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVH--GRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       129 ~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh--~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      +.+.++++.+++..++|+.+.+.       +.+.++.+.+.|+|++.++  |.+.......+.+++.++++++.+++||+
T Consensus       105 ~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvi  177 (221)
T PRK01130        105 ETLAELVKRIKEYPGQLLMADCS-------TLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVI  177 (221)
T ss_pred             CCHHHHHHHHHhCCCCeEEEeCC-------CHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEE
Confidence            56677888887634777776553       2344678999999999874  34333222345578999999999999999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.|||.|++++.+++ ..|||+|++|++++.
T Consensus       178 a~GGI~t~~~~~~~l-~~GadgV~iGsai~~  207 (221)
T PRK01130        178 AEGRINTPEQAKKAL-ELGAHAVVVGGAITR  207 (221)
T ss_pred             EECCCCCHHHHHHHH-HCCCCEEEEchHhcC
Confidence            999999999999999 589999999998654

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=99.05  E-value=2e-09  Score=91.97  Aligned_cols=128  Identities=17%  Similarity=0.283  Sum_probs=92.6

Q ss_pred             HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428           90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT  169 (326)
Q Consensus        90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~  169 (326)
                      +.++-+++..|+|.|-+.+-              .-.+|+.+.++++++++.. ..+..-+       .+.|-+..+.++
T Consensus        54 ~~ev~~l~~aGadIIAlDaT--------------~R~Rp~~l~~li~~i~~~~-~l~MADi-------st~ee~~~A~~~  111 (192)
T PF04131_consen   54 LKEVDALAEAGADIIALDAT--------------DRPRPETLEELIREIKEKY-QLVMADI-------STLEEAINAAEL  111 (192)
T ss_dssp             HHHHHHHHHCT-SEEEEE-S--------------SSS-SS-HHHHHHHHHHCT-SEEEEE--------SSHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEecC--------------CCCCCcCHHHHHHHHHHhC-cEEeeec-------CCHHHHHHHHHc
Confidence            45555566569998877641              1235678899999999987 7888877       357778999999


Q ss_pred             CCcEEE--EeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          170 GVSALA--VHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       170 G~d~i~--vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      |+|.|-  +.|.|..... ..+|+++++++++. ++|||+-|+|+|++++.+++ +.||++|.||++ +.+|++..
T Consensus       112 G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al-~~GA~aVVVGsA-ITrP~~It  183 (192)
T PF04131_consen  112 GFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKAL-ELGAHAVVVGSA-ITRPQEIT  183 (192)
T ss_dssp             T-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHH-HTT-SEEEE-HH-HH-HHHHH
T ss_pred             CCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHH-hcCCeEEEECcc-cCCHHHHH
Confidence            999996  4566665444 56799999999986 99999999999999999999 699999999987 56665533

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=99.05  E-value=8.5e-09  Score=91.97  Aligned_cols=134  Identities=14%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE-ec---CC
Q 020428           80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK-IR---LL  153 (326)
Q Consensus        80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK-~r---~g  153 (326)
                      +|++|  .+.++..++...+ .+++-|-|              |+..+++|+++.++..    .  +.+.+| -+   .+
T Consensus        80 v~vgGGirs~e~~~~~~~~l-~~a~rvvi--------------gT~a~~~p~~l~~~~~----v--vslD~~~g~v~~~g  138 (221)
T TIGR00734        80 LIADCGVRSPEDLETLPFTL-EFASRVVV--------------ATETLDITELLRECYT----V--VSLDFKEKFLDASG  138 (221)
T ss_pred             EEEcCccCCHHHHHHHHhhh-ccceEEee--------------cChhhCCHHHHHHhhh----E--EEEEeECCcccccc
Confidence            78865  4566655543322 23555543              4666789998887651    1  222233 11   14


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |. +...++.+.+.+.|+ .+.+....+++...+ +|+++++++++.+++|||++|||.|.+|+.++. ..|+++|++|+
T Consensus       139 ~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G-~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~-~~Ga~~vivgs  214 (221)
T TIGR00734       139 LF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMKG-PNLELLTKTLELSEHPVMLGGGISGVEDLELLK-EMGVSAVLVAT  214 (221)
T ss_pred             cc-ccHHHHHHHHHhcCC-EEEEEECCccccCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEhH
Confidence            43 367778888889998 788887777766544 589999999999999999999999999999977 58999999999


Q ss_pred             chhcC
Q 020428          234 GALWN  238 (326)
Q Consensus       234 ~~l~~  238 (326)
                      +++.+
T Consensus       215 al~~g  219 (221)
T TIGR00734       215 AVHKG  219 (221)
T ss_pred             HhhCC
Confidence            98754

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.04  E-value=4.1e-09  Score=94.63  Aligned_cols=137  Identities=13%  Similarity=0.148  Sum_probs=104.8

Q ss_pred             EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh-hcccCcEEEEec-----
Q 020428           80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK-RNLDVPVTCKIR-----  151 (326)
Q Consensus        80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~-~~~~~pv~vK~r-----  151 (326)
                      +|++|  .+.++..+   .+..|++-|-|              |+..+++|+++.++.+..- +.+  -+++-.|     
T Consensus        76 v~vGGGIrs~e~~~~---~l~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~~v  136 (232)
T PRK13586         76 IQVGGGIRDIEKAKR---LLSLDVNALVF--------------STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTKRV  136 (232)
T ss_pred             EEEeCCcCCHHHHHH---HHHCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCCEE
Confidence            78865  35554443   34347777755              4677889999999998883 332  2333332     


Q ss_pred             -C-CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          152 -L-LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       152 -~-g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                       . ||.  ..+..++++.+++.|+..|.++...+++...|+ |+++++.+++. ..|++++|||.|.+|+.++. ..|++
T Consensus       137 ~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~-d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~-~~G~~  213 (232)
T PRK13586        137 LIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGI-DYNVKDYARLI-RGLKEYAGGVSSDADLEYLK-NVGFD  213 (232)
T ss_pred             EccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCc-CHHHHHHHHhC-CCCEEEECCCCCHHHHHHHH-HCCCC
Confidence             1 353  235789999999999999999999999887665 89999998876 56799999999999999998 68999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      +|.+|++++.+
T Consensus       214 gvivg~Aly~g  224 (232)
T PRK13586        214 YIIVGMAFYLG  224 (232)
T ss_pred             EEEEehhhhcC
Confidence            99999998854

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=99.04  E-value=3e-09  Score=92.88  Aligned_cols=130  Identities=22%  Similarity=0.257  Sum_probs=104.3

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC-C----C--------
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL-L----K--------  154 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~-g----~--------  154 (326)
                      ....+-+++..|+|-|-||              ++.+.+|+++.++-+..-+++ -+.|..|-+. |    |        
T Consensus        85 s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr  150 (256)
T COG0107          85 SVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGR  150 (256)
T ss_pred             CHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCC
Confidence            3334446676799999998              456789999999988886665 4455566542 1    1        


Q ss_pred             --ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 --SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 --~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                        +.-+++++++.+++.|+..|.++...+++.. ...|+++++.+++.+++|||++||..+++++.+.+..+.||++..+
T Consensus       151 ~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk-~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAA  229 (256)
T COG0107         151 EDTGLDAVEWAKEVEELGAGEILLTSMDRDGTK-AGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAA  229 (256)
T ss_pred             cCCCcCHHHHHHHHHHcCCceEEEeeecccccc-cCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhh
Confidence              2247999999999999999999988887664 3459999999999999999999999999999999977779998777


Q ss_pred             c
Q 020428          233 R  233 (326)
Q Consensus       233 r  233 (326)
                      +
T Consensus       230 s  230 (256)
T COG0107         230 S  230 (256)
T ss_pred             h
Confidence            5

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.03  E-value=1.7e-08  Score=100.17  Aligned_cols=133  Identities=17%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      |..++...++..+++.|+|.|.|++.-               .+.....+.++.+++.. +.||.++.=      .+.+-
T Consensus       237 g~~~~~~~~~~~l~~ag~d~i~id~a~---------------G~s~~~~~~i~~ik~~~~~~~v~aG~V------~t~~~  295 (495)
T PTZ00314        237 STRPEDIERAAALIEAGVDVLVVDSSQ---------------GNSIYQIDMIKKLKSNYPHVDIIAGNV------VTADQ  295 (495)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEecCC---------------CCchHHHHHHHHHHhhCCCceEEECCc------CCHHH
Confidence            455677666666666699999998741               12234567788888875 577776421      34566


Q ss_pred             HHHHHHcCCcEEEEe---ec---ccCCCCCCcCCHHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          163 ARRIEKTGVSALAVH---GR---KVADRPRDPAKWGEIADIV---AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       163 a~~l~~~G~d~i~vh---~r---~~~~~~~~~~~~~~i~~i~---~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++.+.++|+|+|.+.   |.   |+.....+.+.+..+.+++   +..++|||+.|||.++.|+.+++ ..|||+||+|+
T Consensus       296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAl-a~GA~~Vm~G~  374 (495)
T PTZ00314        296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKAL-ALGADCVMLGS  374 (495)
T ss_pred             HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH-HcCCCEEEECc
Confidence            788889999999862   11   1111123444566655444   44689999999999999999999 69999999999


Q ss_pred             chhcC
Q 020428          234 GALWN  238 (326)
Q Consensus       234 ~~l~~  238 (326)
                      .+...
T Consensus       375 ~~a~~  379 (495)
T PTZ00314        375 LLAGT  379 (495)
T ss_pred             hhccc
Confidence            97763

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=98.99  E-value=1.5e-08  Score=91.38  Aligned_cols=143  Identities=14%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCC----hHHHHHHHHHH-hhcccCcEEEEe-
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK----PELIHDILTML-KRNLDVPVTCKI-  150 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~----p~~~~~iv~~v-~~~~~~pv~vK~-  150 (326)
                      .+-+|++|.=- . ..+.+.+..|++.+-|+              +.++++    |+++.++.+.. .+.+-+.+.+|. 
T Consensus        76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~  139 (253)
T TIGR02129        76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT  139 (253)
T ss_pred             CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence            35678865432 2 44555665699988874              455555    88999998888 454444445541 


Q ss_pred             -----cC---CCCh---HHHH-HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHH
Q 020428          151 -----RL---LKSS---QDTV-ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQ  218 (326)
Q Consensus       151 -----r~---g~~~---~~~~-e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~  218 (326)
                           +.   ||..   -++. ++++.+++. +..|.++...+++...|+ |+++++++++.+++|||++|||.|.+|+.
T Consensus       140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G~-dlel~~~l~~~~~ipVIASGGv~s~eDi~  217 (253)
T TIGR02129       140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKGI-DEELVSKLGEWSPIPITYAGGAKSIDDLD  217 (253)
T ss_pred             CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccccC-CHHHHHHHHhhCCCCEEEECCCCCHHHHH
Confidence                 11   4532   3566 999999999 999999999999887665 89999999999999999999999999999


Q ss_pred             HHHHh-cCCcEEEeccchhc
Q 020428          219 RIKTA-AGASSVMAARGALW  237 (326)
Q Consensus       219 ~~l~~-~Gad~VmiGr~~l~  237 (326)
                      ++.+. .|..++.+|++++.
T Consensus       218 ~l~~~~~g~~~aIvG~Alf~  237 (253)
T TIGR02129       218 LVDELSKGKVDLTIGSALDI  237 (253)
T ss_pred             HHHHhcCCCCcEEeeehHHH
Confidence            88532 36778999999764

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.97  E-value=4.9e-08  Score=90.64  Aligned_cols=189  Identities=13%  Similarity=0.124  Sum_probs=125.5

Q ss_pred             CCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeeccc-CCCCcEEEE
Q 020428            4 QNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCH-QERNHVVFQ   81 (326)
Q Consensus         4 ~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~vQ   81 (326)
                      +-|++-|+|-.+++..+.....++|. +.+- -+.+.+...             +|+.         ..+ +....+.+.
T Consensus        46 giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k~~~~e~~~-------------~fv~---------~~~~~~~~~~~va  102 (346)
T PRK05096         46 GVPIIAANMDTVGTFEMAKALASFDILTAVH-KHYSVEEWA-------------AFVN---------NSSADVLKHVMVS  102 (346)
T ss_pred             CCceEecCCCccccHHHHHHHHHCCCeEEEe-cCCCHHHHH-------------HHHH---------hccccccceEEEE
Confidence            47999999999999999988888765 3332 222222111             0110         111 111234554


Q ss_pred             ECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHH
Q 020428           82 MGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~  158 (326)
                      + |..++++.++.++++.  ++|.|-|....               -+-+.+.++++.+++.. +.+|.+--      -.
T Consensus       103 v-G~~~~d~er~~~L~~~~~g~D~iviD~Ah---------------Ghs~~~i~~ik~ik~~~P~~~vIaGN------V~  160 (346)
T PRK05096        103 T-GTSDADFEKTKQILALSPALNFICIDVAN---------------GYSEHFVQFVAKAREAWPDKTICAGN------VV  160 (346)
T ss_pred             e-cCCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHHhCCCCcEEEec------cc
Confidence            3 5677889988888873  78877664321               13467888999999876 56655422      13


Q ss_pred             HHHHHHHHHHcCCcEEEEe------ecccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          159 TVELARRIEKTGVSALAVH------GRKVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh------~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +.+.++.|.++|||.|-|-      .-|+.....|.+.+..+.++++   ..++|||+-|||.+.-|+.+.+ ..|||.|
T Consensus       161 T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAl-aaGAd~V  239 (346)
T PRK05096        161 TGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAF-GGGADFV  239 (346)
T ss_pred             CHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHH-HcCCCEE
Confidence            4567888999999999752      1122222234456666655544   4689999999999999999999 6999999


Q ss_pred             EeccchhcC
Q 020428          230 MAARGALWN  238 (326)
Q Consensus       230 miGr~~l~~  238 (326)
                      |+|+-+-..
T Consensus       240 MlGsllAGt  248 (346)
T PRK05096        240 MLGGMLAGH  248 (346)
T ss_pred             EeChhhcCc
Confidence            999877653

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=98.94  E-value=1.9e-09  Score=94.04  Aligned_cols=88  Identities=19%  Similarity=0.329  Sum_probs=78.7

Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +..+++++|+.+.+.|+|.++.-..|+.... ...++++++++++.+.||+...|||.|.+|+.+++ ..|||-|.|.++
T Consensus        28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g-r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll-~aGADKVSINsa  105 (256)
T COG0107          28 DAGDPVELAKRYNEEGADELVFLDITASSEG-RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLL-RAGADKVSINSA  105 (256)
T ss_pred             hcCChHHHHHHHHHcCCCeEEEEeccccccc-chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHH-HcCCCeeeeChh
Confidence            3457899999999999999998888776432 34579999999999999999999999999999999 799999999999


Q ss_pred             hhcCcccccc
Q 020428          235 ALWNASIFSS  244 (326)
Q Consensus       235 ~l~~P~lf~~  244 (326)
                      ++.||.+.++
T Consensus       106 Av~~p~lI~~  115 (256)
T COG0107         106 AVKDPELITE  115 (256)
T ss_pred             HhcChHHHHH
Confidence            9999998775

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=98.92  E-value=9.8e-08  Score=86.59  Aligned_cols=157  Identities=24%  Similarity=0.275  Sum_probs=114.6

Q ss_pred             EEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccc---------------------------cccccccc----c
Q 020428           78 VVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFS---------------------------VSGGMGAA----L  124 (326)
Q Consensus        78 ~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~---------------------------~~~~~G~~----l  124 (326)
                      -.+||.- .|-+--.+..+++++ ||..+=+...-|.--.                           ...+..+.    .
T Consensus       123 rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~  202 (363)
T KOG0538|consen  123 RWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYV  202 (363)
T ss_pred             EEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhh
Confidence            4678854 455556667777776 8887777655443100                           00000011    1


Q ss_pred             --cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-
Q 020428          125 --LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-  201 (326)
Q Consensus       125 --~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-  201 (326)
                        .-+|.+-=+-++.+++.+..||.+|-=+      +.|-|+.+.++|+++|+|++-...|....|+..+.+.++.+++ 
T Consensus       203 ~~~id~Sl~W~Di~wLr~~T~LPIvvKGil------t~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~  276 (363)
T KOG0538|consen  203 SSQIDPSLSWKDIKWLRSITKLPIVVKGVL------TGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVE  276 (363)
T ss_pred             hcCCCCCCChhhhHHHHhcCcCCeEEEeec------ccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhc
Confidence              1133344455788888889999999753      2344778889999999998877777777899999999999988 


Q ss_pred             -CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          202 -SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       202 -~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                       ++||+.-|||++..|+.+++ ..||.+|.+||++++.-..
T Consensus       277 ~ri~V~lDGGVR~G~DVlKAL-ALGAk~VfiGRP~v~gLA~  316 (363)
T KOG0538|consen  277 GRIPVFLDGGVRRGTDVLKAL-ALGAKGVFIGRPIVWGLAA  316 (363)
T ss_pred             CceEEEEecCcccchHHHHHH-hcccceEEecCchheeecc
Confidence             79999999999999999999 6999999999998876554

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=98.92  E-value=5.2e-09  Score=94.01  Aligned_cols=86  Identities=21%  Similarity=0.314  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++++.+++.|++.|+++...+.+. ..+.+++.++++++.+++||+++|||+|.+|+.+++ ..|+++|++|++++
T Consensus        30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~-~~G~~~vilg~~~l  107 (232)
T TIGR03572        30 GDPVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLL-SLGADKVSINTAAL  107 (232)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChhHh
Confidence            3789999999999999999999988643 346789999999999999999999999999999988 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       108 ~~~~~~~~  115 (232)
T TIGR03572       108 ENPDLIEE  115 (232)
T ss_pred             cCHHHHHH
Confidence            99987665

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=98.90  E-value=4e-07  Score=80.22  Aligned_cols=200  Identities=16%  Similarity=0.184  Sum_probs=119.6

Q ss_pred             CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +++.|+++.- ..|.+ ..++......|+.++..-   .+......              .....-+++..+..+..+..
T Consensus         6 ~f~SRL~lGT-gky~s~~~m~~ai~aSg~evvTva---lRR~~~~~--------------~~~~~~~~~~i~~~~~~lLP   67 (247)
T PF05690_consen    6 EFRSRLILGT-GKYPSPEVMREAIEASGAEVVTVA---LRRVNLGS--------------KPGGDNILDYIDRSGYTLLP   67 (247)
T ss_dssp             EES-SEEEE--STSSSHHHHHHHHHHTT-SEEEEE---CCGSTTTS---------------TTCHHCCCCTTCCTSEEEE
T ss_pred             EeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEE---EecccCCC--------------CCCCccHHHHhcccCCEECC
Confidence            4677888754 45655 456677777788877432   11111000              00001133444545556777


Q ss_pred             EEC-CCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428           81 QMG-TSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        81 Ql~-g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~  157 (326)
                      +-. +.+.++..+.|+++.+  +-++|-|-.-       .+  .-.|+-||-...+-.+.+.+. +.-|.-=+.      
T Consensus        68 NTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi-------~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~------  131 (247)
T PF05690_consen   68 NTAGCRTAEEAVRTARLAREAFGTNWIKLEVI-------GD--DKTLLPDPIETLKAAEILVKE-GFVVLPYCT------  131 (247)
T ss_dssp             E-TT-SSHHHHHHHHHHHHHTTS-SEEEE--B-------S---TTT--B-HHHHHHHHHHHHHT-T-EEEEEE-------
T ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEe-------CC--CCCcCCChhHHHHHHHHHHHC-CCEEeecCC------
Confidence            774 4689999999999987  5678877531       11  134667776666655555443 444544443      


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +-.-+|+.|+++|+..|.--|-.-. ...|..+...++.|.+..++|||.-+||.++.|+..++ +.|||+|.+.+++-.
T Consensus       132 ~D~v~akrL~d~GcaavMPlgsPIG-Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM-ElG~daVLvNTAiA~  209 (247)
T PF05690_consen  132 DDPVLAKRLEDAGCAAVMPLGSPIG-SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAVLVNTAIAK  209 (247)
T ss_dssp             S-HHHHHHHHHTT-SEBEEBSSSTT-T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHH-HTT-SEEEESHHHHT
T ss_pred             CCHHHHHHHHHCCCCEEEecccccc-cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH-HcCCceeehhhHHhc
Confidence            3356899999999999987654332 23466778899999999999999999999999999999 699999999999654

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=98.90  E-value=2.9e-08  Score=98.96  Aligned_cols=136  Identities=16%  Similarity=0.208  Sum_probs=101.8

Q ss_pred             HHHHHHhhcCCCEEEEccC---CCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEE-----------------
Q 020428           91 LTAAKMVCKDVAAIDINMG---CPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCK-----------------  149 (326)
Q Consensus        91 ~~aa~~~~~~~d~idlN~g---cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK-----------------  149 (326)
                      ..+.+++..|+|-|-||..   .|-.     -+-+.-..+|+++.++.+..-++ +-+.|.+|                 
T Consensus       338 e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~  412 (538)
T PLN02617        338 EVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKV  412 (538)
T ss_pred             HHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccc
Confidence            4555566569999999742   1100     01112345789999999988554 22222222                 


Q ss_pred             ----------------ecCCC---ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428          150 ----------------IRLLK---SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD  210 (326)
Q Consensus       150 ----------------~r~g~---~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg  210 (326)
                                      +. ||   +..++.++++.+++.|+..|.++...+++...|+ |+++++++++.+++|||++||
T Consensus       413 ~~~~~~~~~~~~~~v~~~-gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~-d~~l~~~v~~~~~ipviasGG  490 (538)
T PLN02617        413 TNPGPNGEEYAWYQCTVK-GGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGF-DIELVKLVSDAVTIPVIASSG  490 (538)
T ss_pred             cccCcCcccceEEEEEEe-cCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCc-CHHHHHHHHhhCCCCEEEECC
Confidence                            11 22   2347899999999999999999999998876555 899999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCcEEEecc
Q 020428          211 VFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +.+++|+.++++.+|+|+++.|.
T Consensus       491 ~g~~~d~~~~~~~~~~~a~~aa~  513 (538)
T PLN02617        491 AGTPEHFSDVFSKTNASAALAAG  513 (538)
T ss_pred             CCCHHHHHHHHhcCCccEEEEEe
Confidence            99999999999778899999884

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=6.7e-10  Score=104.27  Aligned_cols=188  Identities=45%  Similarity=0.633  Sum_probs=159.6

Q ss_pred             EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC
Q 020428          103 AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA  182 (326)
Q Consensus       103 ~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~  182 (326)
                      ..++|.+||..+....+.+.+.+..+..+.++.+..++..+.|+ .|.|+-.++.++.++++.+++.+  .+.+|+|..-
T Consensus       289 l~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f  365 (477)
T KOG2334|consen  289 LRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIF  365 (477)
T ss_pred             hhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccc
Confidence            35889999999999999999999999999999999999999998 99999888889999999999988  6678888766


Q ss_pred             CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHH
Q 020428          183 DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSI  262 (326)
Q Consensus       183 ~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~  262 (326)
                      .+...|+.|+.++.......+|++.+|.+....+-   . ..++..+|..++...+..+|...++..|++....++....
T Consensus       366 ~r~~~pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~-d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~  441 (477)
T KOG2334|consen  366 DRPTDPAKWDTPKMVLADLCVKTKANGPVYETVQR---T-DKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSN  441 (477)
T ss_pred             cccCCCcCCCCHHHHHHHhhhhhcCCCcchhhhhh---h-hhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcC
Confidence            66677889999998888889999999998766653   3 4778899999999999999998888888888778888887


Q ss_pred             hhccCcchHHHHHHHHHHHhhcCCCchhHHHhccC
Q 020428          263 FWENNVKSTKHTLKEMIMHYSSLELPEGKAIIKSE  297 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (326)
                      .+......+...+++|..+...++.|+.+.++++.
T Consensus       442 l~e~~V~~~~~sl~~~~a~~~~qe~~~~~~~~~a~  476 (477)
T KOG2334|consen  442 LWEADVGSENYSLKEMIAHHSCQELPEGKSINKAD  476 (477)
T ss_pred             cchhhhcccchhHHHHHhhchhhccCCchhhhccC
Confidence            77777666777899998887777888877766543

>cd00945 Aldolase_Class_I Class I aldolases

Probab=98.86  E-value=2.4e-07  Score=80.41  Aligned_cols=143  Identities=13%  Similarity=0.148  Sum_probs=111.5

Q ss_pred             CCcEEEEECCCC----HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEE
Q 020428           75 RNHVVFQMGTSD----AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVT  147 (326)
Q Consensus        75 ~~p~~vQl~g~~----~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~  147 (326)
                      +.|++++++.++    .++..+.++.+.+ |+|++.+..  |.        +...-.+++.+.+.++++.+.+  ++|+.
T Consensus        48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~pv~  117 (201)
T cd00945          48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEAADGGLPLK  117 (201)
T ss_pred             CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence            468999998887    7888888888777 999998842  21        1111125788889899998874  89999


Q ss_pred             EEecCCC--ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHh
Q 020428          148 CKIRLLK--SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       148 vK~r~g~--~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      +....+.  +.+...++++.+.+.|++.|..+...    +.+..+++.++++++..  ++||+..||+.+++.+...+ .
T Consensus       118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~----~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~-~  192 (201)
T cd00945         118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGF----GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAI-E  192 (201)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHH-H
Confidence            9998753  45667777888889999999876432    22455889999998887  67999999999999999999 5


Q ss_pred             cCCcEEEec
Q 020428          224 AGASSVMAA  232 (326)
Q Consensus       224 ~Gad~VmiG  232 (326)
                      .|++|+++|
T Consensus       193 ~Ga~g~~~g  201 (201)
T cd00945         193 AGADGIGTS  201 (201)
T ss_pred             hccceeecC
Confidence            799999876

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=98.85  E-value=4.6e-08  Score=85.43  Aligned_cols=112  Identities=23%  Similarity=0.383  Sum_probs=82.5

Q ss_pred             ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE-----------e-------
Q 020428          116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV-----------H-------  177 (326)
Q Consensus       116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v-----------h-------  177 (326)
                      .+...|-+-|.||+.+.+|+.++    .+||..|.|+|.-.     .|+.|+..|+|+|.=           |       
T Consensus        54 iR~aGGVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~-----EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~Ft  124 (296)
T COG0214          54 IRAAGGVARMADPKMIEEIMDAV----SIPVMAKVRIGHFV-----EAQILEALGVDMIDESEVLTPADEEFHINKWKFT  124 (296)
T ss_pred             HHhccCccccCCHHHHHHHHHhc----ccceeeeeecchhH-----HHHHHHHhCCCccccccccCCCchhhhcchhhcc
Confidence            45667888999999888777554    89999999998533     378999999999851           1       


Q ss_pred             ------e-----------------cccCCCCCC----------------------------------cCCHHHHHHHHHh
Q 020428          178 ------G-----------------RKVADRPRD----------------------------------PAKWGEIADIVAA  200 (326)
Q Consensus       178 ------~-----------------r~~~~~~~~----------------------------------~~~~~~i~~i~~~  200 (326)
                            +                 ||+....+|                                  .+.++++.++++.
T Consensus       125 VPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~  204 (296)
T COG0214         125 VPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL  204 (296)
T ss_pred             cceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh
Confidence                  0                 122111111                                  2335666777766


Q ss_pred             cCCcE--EEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          201 LSIPV--IANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       201 ~~iPV--i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      -++||  ++.|||.||.|+.-++ +.|||||.+|+|++.
T Consensus       205 grLPVvnFAAGGvATPADAALMM-~LGadGVFVGSGIFK  242 (296)
T COG0214         205 GRLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFK  242 (296)
T ss_pred             CCCCeEeecccCcCChhHHHHHH-HhCCCeEEecccccC
Confidence            67887  4999999999999999 799999999999543

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=98.81  E-value=1.7e-08  Score=91.22  Aligned_cols=84  Identities=17%  Similarity=0.201  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++|+.+.+.|++.|++-.-....  ..+.+.+.++++.+.+++||.+.|||+|.+|+++++ ..||+.|.+|++++.
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l-~~Ga~kvviGs~~l~  109 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAAL-ATGCARVNIGTAALE  109 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECchHhC
Confidence            78899999999999999998876553  355688999999999999999999999999999999 699999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      ||.++.+
T Consensus       110 ~p~l~~~  116 (241)
T PRK14024        110 NPEWCAR  116 (241)
T ss_pred             CHHHHHH
Confidence            9998876

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.81  E-value=1.9e-08  Score=90.24  Aligned_cols=86  Identities=26%  Similarity=0.338  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++++.+++.|++.+++........ ..+.+++.++++++.+++||++.|||+|.+|+++++ ..||++|++|++++
T Consensus        30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~-~~Ga~~vilg~~~l  107 (233)
T PRK00748         30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-GKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALL-DAGVSRVIIGTAAV  107 (233)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCcccc-CCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHH-HcCCCEEEECchHH
Confidence            3788999999999999999998744322 235689999999999999999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|.++.+
T Consensus       108 ~~~~~l~e  115 (233)
T PRK00748        108 KNPELVKE  115 (233)
T ss_pred             hCHHHHHH
Confidence            99977654

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.80  E-value=1.1e-07  Score=94.52  Aligned_cols=132  Identities=17%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      |..++...++..+++.|+|.|-|.+  ++.             +...+.++++.+++.+ +.+|.++-=      .+.+-
T Consensus       244 g~~~~~~~r~~~l~~ag~d~i~iD~--~~g-------------~~~~~~~~i~~ik~~~p~~~vi~g~v------~t~e~  302 (505)
T PLN02274        244 GTRESDKERLEHLVKAGVDVVVLDS--SQG-------------DSIYQLEMIKYIKKTYPELDVIGGNV------VTMYQ  302 (505)
T ss_pred             cCCccHHHHHHHHHHcCCCEEEEeC--CCC-------------CcHHHHHHHHHHHHhCCCCcEEEecC------CCHHH
Confidence            4456777777777777999887754  221             2345668899999877 577776521      45667


Q ss_pred             HHHHHHcCCcEEEEee--c----ccCCC---CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          163 ARRIEKTGVSALAVHG--R----KVADR---PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~--r----~~~~~---~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++.+.++|+|.|.+..  .    |+...   ......+..+.++.+..++|||+-|||.++.|+.+++ ..||++||+|+
T Consensus       303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAl-a~GA~~V~vGs  381 (505)
T PLN02274        303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKAL-TLGASTVMMGS  381 (505)
T ss_pred             HHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEch
Confidence            8899999999998731  1    11101   1112356667888888899999999999999999999 59999999999


Q ss_pred             chhc
Q 020428          234 GALW  237 (326)
Q Consensus       234 ~~l~  237 (326)
                      .+..
T Consensus       382 ~~~~  385 (505)
T PLN02274        382 FLAG  385 (505)
T ss_pred             hhcc
Confidence            9886

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.80  E-value=1.5e-07  Score=92.69  Aligned_cols=136  Identities=21%  Similarity=0.206  Sum_probs=99.5

Q ss_pred             CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHH
Q 020428           86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      .++.+.++..+++.|+|.|.|++.-.               +-+.+.+.++.+++.. +.||.++.=      .+.+-++
T Consensus       222 ~~~~~~r~~~L~~aG~d~I~vd~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~G~v------~t~~~a~  280 (450)
T TIGR01302       222 REFDKERAEALVKAGVDVIVIDSSHG---------------HSIYVIDSIKEIKKTYPDLDIIAGNV------ATAEQAK  280 (450)
T ss_pred             chhHHHHHHHHHHhCCCEEEEECCCC---------------cHhHHHHHHHHHHHhCCCCCEEEEeC------CCHHHHH
Confidence            45677777777766999999986432               2246778899998884 789888553      3456688


Q ss_pred             HHHHcCCcEEEEe-ec-----ccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          165 RIEKTGVSALAVH-GR-----KVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       165 ~l~~~G~d~i~vh-~r-----~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .+.++|+|+|.|. |.     |+.....+.+.+..+.++++   ..++|||+.|||.++.|+.+++ ..||++||+|+.+
T Consensus       281 ~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAl-a~GA~~V~~G~~~  359 (450)
T TIGR01302       281 ALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL-AAGADAVMLGSLL  359 (450)
T ss_pred             HHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECchh
Confidence            8889999999864 11     22212234456667666644   4689999999999999999999 6999999999998


Q ss_pred             hcCccccc
Q 020428          236 LWNASIFS  243 (326)
Q Consensus       236 l~~P~lf~  243 (326)
                      ....+-..
T Consensus       360 a~~~e~pg  367 (450)
T TIGR01302       360 AGTTESPG  367 (450)
T ss_pred             hcCCcCCC
Confidence            87554433

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=98.78  E-value=3.3e-07  Score=81.44  Aligned_cols=136  Identities=13%  Similarity=0.203  Sum_probs=94.7

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +.|+.++=+..++.+   +......|+|+|-+..  +            .+ .++.+.++++.... .++.+.+-+.   
T Consensus        72 ~iPi~~~~~i~~~~~---v~~~~~~Gad~v~l~~--~------------~~-~~~~~~~~~~~~~~-~g~~~~v~v~---  129 (217)
T cd00331          72 SLPVLRKDFIIDPYQ---IYEARAAGADAVLLIV--A------------AL-DDEQLKELYELARE-LGMEVLVEVH---  129 (217)
T ss_pred             CCCEEECCeecCHHH---HHHHHHcCCCEEEEee--c------------cC-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence            357776534455542   2222334899887642  1            12 23677777777644 3555544453   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                          ..+.++.+.+.|++.+.+++++...   .+.+.+.+.++++.+  ++||++.|||.|++|+.+++ ..|||+|++|
T Consensus       130 ----~~~e~~~~~~~g~~~i~~t~~~~~~---~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~-~~Ga~gvivG  201 (217)
T cd00331         130 ----DEEELERALALGAKIIGINNRDLKT---FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLA-EAGADAVLIG  201 (217)
T ss_pred             ----CHHHHHHHHHcCCCEEEEeCCCccc---cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHH-HcCCCEEEEC
Confidence                2233677788999999999776442   245678899998874  79999999999999999999 6899999999


Q ss_pred             cchhcCcc
Q 020428          233 RGALWNAS  240 (326)
Q Consensus       233 r~~l~~P~  240 (326)
                      ++++..+.
T Consensus       202 sai~~~~~  209 (217)
T cd00331         202 ESLMRAPD  209 (217)
T ss_pred             HHHcCCCC
Confidence            99987554

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.76  E-value=1.8e-07  Score=83.87  Aligned_cols=131  Identities=13%  Similarity=0.080  Sum_probs=95.0

Q ss_pred             EEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----
Q 020428           79 VFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL----  152 (326)
Q Consensus        79 ~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~----  152 (326)
                      -+|+.|  .+.++..++.   ..|++.+=++              ++.. +|+++.++.+...+   +-+++-.|-    
T Consensus        75 pv~~gGGIrs~edv~~l~---~~G~~~vivG--------------taa~-~~~~l~~~~~~~g~---ivvslD~~~g~v~  133 (228)
T PRK04128         75 KVQVGGGLRTYESIKDAY---EIGVENVIIG--------------TKAF-DLEFLEKVTSEFEG---ITVSLDVKGGRIA  133 (228)
T ss_pred             CEEEcCCCCCHHHHHHHH---HCCCCEEEEC--------------chhc-CHHHHHHHHHHcCC---EEEEEEccCCeEe
Confidence            355644  4666665543   2378877653              4555 89999999887732   334444433    


Q ss_pred             --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428          153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                        ||.   ..+..++++.+++. +..|.++...+++...|+.  +    +.+. .++|||++|||.|.+|+.++. ..|+
T Consensus       134 ~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d--~----l~~~~~~~pviasGGv~~~~Dl~~l~-~~g~  205 (228)
T PRK04128        134 VKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE--E----IERFWGDEEFIYAGGVSSAEDVKKLA-EIGF  205 (228)
T ss_pred             cCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH--H----HHHhcCCCCEEEECCCCCHHHHHHHH-HCCC
Confidence              342   33577899999988 9999999999998877763  3    2333 589999999999999999999 4899


Q ss_pred             cEEEeccchhcC
Q 020428          227 SSVMAARGALWN  238 (326)
Q Consensus       227 d~VmiGr~~l~~  238 (326)
                      +||.+|++++..
T Consensus       206 ~gvivg~al~~g  217 (228)
T PRK04128        206 SGVIIGKALYEG  217 (228)
T ss_pred             CEEEEEhhhhcC
Confidence            999999998654

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=98.76  E-value=4e-07  Score=83.02  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=101.4

Q ss_pred             EEEEEC-C-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhc-ccCc
Q 020428           78 VVFQMG-T-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRN-LDVP  145 (326)
Q Consensus        78 ~~vQl~-g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~-~~~p  145 (326)
                      ++.=|. | .+.+...++++.+.+ |+|.|||.+  |.+.-..+|      .--+|-  -+.+.+.++++++++. .++|
T Consensus        12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p   89 (256)
T TIGR00262        12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGV--PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP   89 (256)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            444443 3 467888888887766 999999965  432211111      011111  2456788899999876 6788


Q ss_pred             EEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeeccc-------------------------------------C---
Q 020428          146 VTCKIRLLKSS---QDTVELARRIEKTGVSALAVHGRKV-------------------------------------A---  182 (326)
Q Consensus       146 v~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~-------------------------------------~---  182 (326)
                      +..  -...++   --..++++.+.++|+|.|++|.-..                                     .   
T Consensus        90 lv~--m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi  167 (256)
T TIGR00262        90 IGL--LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV  167 (256)
T ss_pred             EEE--EEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE
Confidence            652  112222   1235677777777777777663111                                     0   


Q ss_pred             -----CCCCC------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          183 -----DRPRD------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       183 -----~~~~~------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           .+.+|      +...+.++++++..+.||+..|||.|++++.++. ..|||+|++|++++.
T Consensus       168 y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~-~~GADgvVvGSaiv~  232 (256)
T TIGR00262       168 YLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAI-DAGADGVIVGSAIVK  232 (256)
T ss_pred             EEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence                 01112      2246778888988899999999999999999999 699999999999763

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=98.73  E-value=8.1e-07  Score=81.39  Aligned_cols=133  Identities=14%  Similarity=0.216  Sum_probs=106.8

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      .|+...+...+++.+.+.++...+ |+..+.+.+|                .+++.-.+.++++++.+  +.++.+..+.
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan~  138 (265)
T cd03315          75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDANR  138 (265)
T ss_pred             eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            466666766678887777766554 9999999765                13466678899999887  4677777777


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.+++.++++.+++.|+++|.       +. ..+.+++..+++++.+++||.+.+.+.++.++.++++...+|.|++-
T Consensus       139 ~~~~~~a~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k  210 (265)
T cd03315         139 GWTPKQAIRALRALEDLGLDYVE-------QP-LPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIK  210 (265)
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence            89999999999999999999983       22 23457899999999999999999999999999999976778988764

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=98.72  E-value=1e-07  Score=90.46  Aligned_cols=109  Identities=22%  Similarity=0.255  Sum_probs=72.8

Q ss_pred             cCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC--------CcCCHHHHH
Q 020428          125 LSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR--------DPAKWGEIA  195 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--------~~~~~~~i~  195 (326)
                      +.+++.+.+.|+.+|+.. +.||++|+-.+...++   ++..+.++|+|.|+|.|.......+        |.+-...+.
T Consensus       184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~  260 (368)
T PF01645_consen  184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALA  260 (368)
T ss_dssp             -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHH
Confidence            457889999999999998 8999999987654432   3333888999999999886553322        222122334


Q ss_pred             HHHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          196 DIVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       196 ~i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.+.+       .+.+++.||+.|+.|+.+++ ..|||+|.+||++|.
T Consensus       261 ~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kal-aLGAD~v~igt~~li  308 (368)
T PF01645_consen  261 RAHQALVKNGLRDRVSLIASGGLRTGDDVAKAL-ALGADAVYIGTAALI  308 (368)
T ss_dssp             HHHHHHHCTT-CCCSEEEEESS--SHHHHHHHH-HCT-SEEE-SHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEEeCCccCHHHHHHHH-hcCCCeeEecchhhh
Confidence            444332       58999999999999999999 699999999999984

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.72  E-value=5.4e-08  Score=88.88  Aligned_cols=86  Identities=16%  Similarity=0.276  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+.+.|++.|++..-.+.... ...+.+.++++.+.+++||++.|||+|.+|+.+++ ..|+++|.+|++++
T Consensus        30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~-~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~-~~G~~~vvigs~~~  107 (258)
T PRK01033         30 GDPINAVRIFNEKEVDELIVLDIDASKRG-SEPNYELIENLASECFMPLCYGGGIKTLEQAKKIF-SLGVEKVSINTAAL  107 (258)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEECCCCcCC-CcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHH-HCCCCEEEEChHHh
Confidence            37899999999999999999988776543 34589999999999999999999999999999999 68999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|.++.+
T Consensus       108 ~~~~~~~~  115 (258)
T PRK01033        108 EDPDLITE  115 (258)
T ss_pred             cCHHHHHH
Confidence            99987665

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.70  E-value=4.4e-08  Score=88.43  Aligned_cols=84  Identities=23%  Similarity=0.330  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCC-CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~-~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.++++.+.+.|++.+++-  +..... ....+++.++++.+.+++|++.+|||+|.+|++.++ ..|||+|++|+.++
T Consensus        33 ~~~e~a~~~~~~G~~~l~i~--dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~-~~Ga~~v~iGs~~~  109 (241)
T PRK13585         33 DPVEVAKRWVDAGAETLHLV--DLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLL-DLGVDRVILGTAAV  109 (241)
T ss_pred             CHHHHHHHHHHcCCCEEEEE--echhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHH-HcCCCEEEEChHHh
Confidence            67899999999999998664  444332 235679999999999999999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|+++.+
T Consensus       110 ~~~~~~~~  117 (241)
T PRK13585        110 ENPEIVRE  117 (241)
T ss_pred             hChHHHHH
Confidence            99988765

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=98.70  E-value=5.5e-07  Score=86.00  Aligned_cols=139  Identities=16%  Similarity=0.181  Sum_probs=111.3

Q ss_pred             CcEEEEECCC--CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEe
Q 020428           76 NHVVFQMGTS--DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~g~--~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~  150 (326)
                      .|+-..+.+.  +++++.+.++.+.+ ||+.+.|.+|.....          .++++...++++++++.+  +.++.+..
T Consensus       127 v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~vDa  196 (357)
T cd03316         127 VRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLMVDA  196 (357)
T ss_pred             eeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence            3455555444  58889888887765 999999998754221          166888899999999987  57888888


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .-+|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.+++++.++++...+|.|+
T Consensus       197 N~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~  268 (357)
T cd03316         197 NGRWDLAEAIRLARALEEYDLFWFE-------EP-VPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQ  268 (357)
T ss_pred             CCCCCHHHHHHHHHHhCccCCCeEc-------CC-CCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEe
Confidence            8789999999999999999988764       21 233478899999999999999999999999999999766789887


Q ss_pred             ec
Q 020428          231 AA  232 (326)
Q Consensus       231 iG  232 (326)
                      +-
T Consensus       269 ~k  270 (357)
T cd03316         269 PD  270 (357)
T ss_pred             cC
Confidence            65

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=98.70  E-value=1.4e-06  Score=76.44  Aligned_cols=73  Identities=18%  Similarity=0.172  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++....+...+..|++.|++..-+..   ..+.+.+.++++++.+++|++..|||+|++++++++ ..|||+|.+|
T Consensus       133 ~e~~~~~a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~-~~GAD~VVVG  205 (205)
T TIGR01769       133 PEIAAAYCLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIV-LAGADAIVTG  205 (205)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHH-HcCCCEEEeC
Confidence            466777788888888888887443222   335678999999999999999999999999999998 5899999987

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.69  E-value=6.4e-08  Score=87.09  Aligned_cols=85  Identities=9%  Similarity=0.083  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHH-cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          158 DTVELARRIEK-TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       158 ~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.++|+.+.+ .|++.++|-.-..... ..+.+.+.|+++.+.+++||.+.|||+|.+|+++++ ..||+-|.+|+.++
T Consensus        32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~-~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l-~~Ga~kvvigt~a~  109 (234)
T PRK13587         32 SAEESIAYYSQFECVNRIHIVDLIGAKA-QHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYF-AAGINYCIVGTKGI  109 (234)
T ss_pred             CHHHHHHHHHhccCCCEEEEEECccccc-CCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHH-HCCCCEEEECchHh
Confidence            67789999999 7999999987765532 346789999999999999999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       110 ~~~~~l~~  117 (234)
T PRK13587        110 QDTDWLKE  117 (234)
T ss_pred             cCHHHHHH
Confidence            99988775

>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]

Probab=98.69  E-value=1.4e-08  Score=93.19  Aligned_cols=150  Identities=18%  Similarity=0.268  Sum_probs=114.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      ++-..+.+.+....+ |.|..|+|+.||+. ...+++|.++-..|..+.|+...++..+.+|+.-|+...  ..+..+.+
T Consensus       215 ynk~~w~el~d~~eqag~d~lE~nlscphg-m~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPN--itd~reva  291 (471)
T KOG1799|consen  215 YNKKCWMELNDSGEQAGQDDLETNLSCPHG-MCERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPN--ITDKREVA  291 (471)
T ss_pred             hhhhhHHHHhhhHHhhcccchhccCCCCCC-CccccccceeccChhhhHHHhhhhhhccccccccccCCC--cccccccc
Confidence            344556666666665 89999999999987 455689999999999999999999999999999999753  33445677


Q ss_pred             HHHHHcCCcEEE---------------------EeecccCCCCCC----cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHH
Q 020428          164 RRIEKTGVSALA---------------------VHGRKVADRPRD----PAKWGEIADIVAAL-SIPVIANGDVFEYDDF  217 (326)
Q Consensus       164 ~~l~~~G~d~i~---------------------vh~r~~~~~~~~----~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~  217 (326)
                      +.....|+.+|+                     +.+|+..++|++    |..+..+..|++.. ..|+.+.|||.|.+|+
T Consensus       292 r~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~  371 (471)
T KOG1799|consen  292 RSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDA  371 (471)
T ss_pred             hhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhhcCccccccCcccccch
Confidence            777777777775                     234555555554    33333344444443 6899999999999999


Q ss_pred             HHHHHhcCCcEEEeccchhcC
Q 020428          218 QRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       218 ~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ..++ ..|+.-|++.+|.+..
T Consensus       372 ~~Fi-l~Gs~~vQVCt~V~~~  391 (471)
T KOG1799|consen  372 AEFI-LLGSNTVQVCTGVMMH  391 (471)
T ss_pred             hhHh-hcCCcHhhhhhHHHhc
Confidence            9999 7999999999997753

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.68  E-value=6.8e-08  Score=86.57  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++++.+.+. ++.+++-.+..... ..+.+++.++++.+.+++||++.|||+|.+|+++++ ..|+++|.+|++++ 
T Consensus        31 dp~~~a~~~~~~-~~~l~ivDldga~~-g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~-~~G~~~vivGtaa~-  106 (228)
T PRK04128         31 DPVEIALRFSEY-VDKIHVVDLDGAFE-GKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAY-EIGVENVIIGTKAF-  106 (228)
T ss_pred             CHHHHHHHHHHh-CCEEEEEECcchhc-CCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECchhc-
Confidence            688999999998 99999976654321 234689999999999999999999999999999999 58999999999999 


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      ||.++++
T Consensus       107 ~~~~l~~  113 (228)
T PRK04128        107 DLEFLEK  113 (228)
T ss_pred             CHHHHHH
Confidence            9988765

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.65  E-value=1.8e-06  Score=78.89  Aligned_cols=126  Identities=18%  Similarity=0.243  Sum_probs=82.7

Q ss_pred             HHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEec-----CC-CChHHHHHHH
Q 020428           93 AAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIR-----LL-KSSQDTVELA  163 (326)
Q Consensus        93 aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r-----~g-~~~~~~~e~a  163 (326)
                      +.+.+..|+++|++-.-          .|+  ..+.+.+ +.++++++.+   ++|+.+..-     ++ .+.+...+.+
T Consensus        96 v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~  162 (258)
T TIGR01949        96 VEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAA  162 (258)
T ss_pred             HHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHH
Confidence            33444449998887431          111  1122333 4555555543   788877433     12 2233444446


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC--CHHHHHHHHH---hcCCcEEEeccchhcC
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF--EYDDFQRIKT---AAGASSVMAARGALWN  238 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~--s~~d~~~~l~---~~Gad~VmiGr~~l~~  238 (326)
                      +.+.+.|+|+|-+.       +  +.+.+.++++.+..++||.+.|||+  |.+++.+.++   +.||+|+.+||+++..
T Consensus       163 ~~a~~~GADyikt~-------~--~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~  233 (258)
T TIGR01949       163 RLGAELGADIVKTP-------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH  233 (258)
T ss_pred             HHHHHHCCCEEecc-------C--CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence            88889999999864       1  1368889999988899999999999  6555544432   5999999999998865


Q ss_pred             cc
Q 020428          239 AS  240 (326)
Q Consensus       239 P~  240 (326)
                      ++
T Consensus       234 ~d  235 (258)
T TIGR01949       234 DD  235 (258)
T ss_pred             CC
Confidence            53

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=98.65  E-value=3.3e-07  Score=78.99  Aligned_cols=133  Identities=22%  Similarity=0.341  Sum_probs=88.3

Q ss_pred             ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE----------e--------
Q 020428          116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV----------H--------  177 (326)
Q Consensus       116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v----------h--------  177 (326)
                      .+...|-+-|.||..+.+|    +.++.+||..|.|+|.-.+     |+.++..|+|+|.=          |        
T Consensus        55 iR~~GgV~RMsDP~mIKei----~~aVsiPVMAk~RiGHFVE-----AQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFk  125 (296)
T KOG1606|consen   55 IRAQGGVARMSDPRMIKEI----KNAVSIPVMAKVRIGHFVE-----AQILEALGVDYIDESEVLTPADWDHHIEKHNFK  125 (296)
T ss_pred             HHhcCCeeecCCHHHHHHH----HHhccchhhhhhhhhhhhH-----HHHHHHhccCccchhhhcccccccchhhhhcCc
Confidence            3456678889999875554    5667899999999974332     67888888888751          1        


Q ss_pred             ------e-----------------cccCCCCCC----------------------------------cCCHHHHHHHHHh
Q 020428          178 ------G-----------------RKVADRPRD----------------------------------PAKWGEIADIVAA  200 (326)
Q Consensus       178 ------~-----------------r~~~~~~~~----------------------------------~~~~~~i~~i~~~  200 (326)
                            .                 ||+....+|                                  .+.++++++.++.
T Consensus       126 vPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~  205 (296)
T KOG1606|consen  126 VPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL  205 (296)
T ss_pred             CceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc
Confidence                  0                 111111111                                  1224555555555


Q ss_pred             cCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHHHhhccC
Q 020428          201 LSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENN  267 (326)
Q Consensus       201 ~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~~~~~~~  267 (326)
                      -++||+  +.|||.||.|+.-++ +.|||||.+|+|++..+.=++         ..+..++...+|..+
T Consensus       206 GrlPVV~FAaGGvaTPADAALmM-QLGCdGVFVGSgiFks~dP~k---------~a~aiVqAvthy~dp  264 (296)
T KOG1606|consen  206 GRLPVVNFAAGGVATPADAALMM-QLGCDGVFVGSGIFKSGDPVK---------RARAIVQAVTHYDDP  264 (296)
T ss_pred             CCCceEEecccCcCChhHHHHHH-HcCCCeEEeccccccCCCHHH---------HHHHHHHHHHccCCH
Confidence            578884  999999999999999 799999999999665443222         334455555556554

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=98.65  E-value=3.4e-06  Score=75.20  Aligned_cols=200  Identities=16%  Similarity=0.133  Sum_probs=124.4

Q ss_pred             CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      ++..|+++.- ..|.+ ..++......|+.++..-   .+...-..  ....-+.+++            .+..+..+..
T Consensus        14 ~f~SRL~lGT-gky~s~~~~~~ai~aSg~evvTva---lRR~~~~~--~~~~~~~l~~------------i~~~~~~~LP   75 (267)
T CHL00162         14 SFNSRLMLGT-GKYKSLKDAIQSIEASGCEIVTVA---IRRLNNNL--LNDNSNLLNG------------LDWNKLWLLP   75 (267)
T ss_pred             EeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEE---EEEeccCc--CCCcchHHHh------------hchhccEECC
Confidence            3566776643 45644 455567777788877432   11110000  0001112222            2222223334


Q ss_pred             EE-CCCCHHHHHHHHHHhhc-C-------CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428           81 QM-GTSDAVRALTAAKMVCK-D-------VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        81 Ql-~g~~~~~~~~aa~~~~~-~-------~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      +- ++.+.++..+.|+++.+ +       -++|-|-.-       .+  --.|+-||-...+..+.+.+. +.-|..=+.
T Consensus        76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi-------~D--~~~LlPD~~etl~Aae~Lv~e-GF~VlPY~~  145 (267)
T CHL00162         76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVI-------SD--PKYLLPDPIGTLKAAEFLVKK-GFTVLPYIN  145 (267)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEe-------CC--CcccCCChHHHHHHHHHHHHC-CCEEeecCC
Confidence            44 35678999998888765 3       356655421       11  135777776666655555443 444443332


Q ss_pred             CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          152 LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                            +-.-+|+.|+++|+..|.--|-.-. ...|-.+...++.|.+..++||+.-+||.+++|+..++ +.|||||.+
T Consensus       146 ------~D~v~a~rLed~Gc~aVMPlgsPIG-Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am-ElGaDgVL~  217 (267)
T CHL00162        146 ------ADPMLAKHLEDIGCATVMPLGSPIG-SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM-ELGASGVLL  217 (267)
T ss_pred             ------CCHHHHHHHHHcCCeEEeeccCccc-CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH-HcCCCEEee
Confidence                  2346799999999999976554322 22456678889999999999999999999999999999 699999999


Q ss_pred             ccchhc
Q 020428          232 ARGALW  237 (326)
Q Consensus       232 Gr~~l~  237 (326)
                      .+|+..
T Consensus       218 nSaIak  223 (267)
T CHL00162        218 NTAVAQ  223 (267)
T ss_pred             cceeec
Confidence            999774

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=98.65  E-value=8.8e-07  Score=80.18  Aligned_cols=148  Identities=14%  Similarity=0.152  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccccc------cccc--CChHHHHHHHHHHhhcccCcEEE--EecCC
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMG------AALL--SKPELIHDILTMLKRNLDVPVTC--KIRLL  153 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G------~~l~--~~p~~~~~iv~~v~~~~~~pv~v--K~r~g  153 (326)
                      .+.+.+.+.++.+.+ |+|.|+|++  |.+.-.-+|-=      -+|.  -+.+...++++.+++..++|+.+  +...-
T Consensus        11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~   88 (242)
T cd04724          11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI   88 (242)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH
Confidence            466789999998887 899999997  55332222200      0000  12457788999999877888654  43310


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeec--------------------------ccC-------------------CCCCC-
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGR--------------------------KVA-------------------DRPRD-  187 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r--------------------------~~~-------------------~~~~~-  187 (326)
                      .. .-...+++.+.++|+++++++.-                          |..                   ....| 
T Consensus        89 ~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~  167 (242)
T cd04724          89 LQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGA  167 (242)
T ss_pred             HH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCC
Confidence            00 01355677777777777776210                          000                   00011 


Q ss_pred             -----cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 -----PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 -----~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           +...+.++++++..++||+..|||++.+++.++. .. ||+|.+|++++.
T Consensus       168 ~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~-~~-ADgvVvGSaiv~  220 (242)
T cd04724         168 RTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVA-KY-ADGVIVGSALVK  220 (242)
T ss_pred             ccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHH-cc-CCEEEECHHHHH
Confidence                 1224667888888899999999999999999999 56 999999998763

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=98.65  E-value=8.1e-07  Score=81.15  Aligned_cols=155  Identities=17%  Similarity=0.202  Sum_probs=101.8

Q ss_pred             EEEEEC-C-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhcccCcE
Q 020428           78 VVFQMG-T-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        78 ~~vQl~-g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      ++.=|. | .+.+...+.++.+.+ |+|.|||.+  |.+.-..+|      .--+|-  -+.+.+.++++++|+..++|+
T Consensus        17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~   94 (263)
T CHL00200         17 LIPFITAGDPDIVITKKALKILDKKGADIIELGI--PYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPI   94 (263)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence            454443 3 467888888887766 999999965  432211111      111111  245678888999987778886


Q ss_pred             EEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccC-----------------------------------------
Q 020428          147 TCKIRLLKSS---QDTVELARRIEKTGVSALAVHGRKVA-----------------------------------------  182 (326)
Q Consensus       147 ~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------------------------------  182 (326)
                      .  +-..+++   --..++++.+.++|+|++++|.-..+                                         
T Consensus        95 v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY  172 (263)
T CHL00200         95 V--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY  172 (263)
T ss_pred             E--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence            4  3223332   13456777778888888877632110                                         


Q ss_pred             ----CCCCCc-----C-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          183 ----DRPRDP-----A-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       183 ----~~~~~~-----~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                          .+.+|.     . --+.++++++.++.||...+||.|++++.++. ..|||||.+|++++.
T Consensus       173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~-~~GADGvVVGSalv~  236 (263)
T CHL00200        173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIK-GWNINGIVIGSACVQ  236 (263)
T ss_pred             EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence                000111     1 13457788888899999999999999999988 689999999999865

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=98.64  E-value=1.9e-07  Score=88.65  Aligned_cols=109  Identities=24%  Similarity=0.220  Sum_probs=85.3

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--  202 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--  202 (326)
                      +.+|-...+.+..+++.+..|+.+|-=.      ..+-+..+-+.|+++|.++.....+...+++..+.+.++++.++  
T Consensus       200 ~~~P~i~ked~~~i~~~~~~~lv~kGV~------~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~  273 (360)
T COG1304         200 LSVPVISKEDGAGISKEWAGPLVLKGIL------APEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDR  273 (360)
T ss_pred             cCCCcccHHHHhHHHHhcCCcHHHhCCC------CHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCC
Confidence            3566666677777777777776665421      12235666778999999986666666678888999999999986  


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +||++.|||++..|+.+++ ..||++|++||+++..-.
T Consensus       274 ~~vi~dGGiR~G~Dv~KAl-ALGA~~v~igrp~L~~l~  310 (360)
T COG1304         274 IEVIADGGIRSGLDVAKAL-ALGADAVGIGRPFLYGLA  310 (360)
T ss_pred             eEEEecCCCCCHHHHHHHH-HhCCchhhhhHHHHHHHH
Confidence            9999999999999999999 699999999999876543

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.63  E-value=4e-07  Score=86.96  Aligned_cols=135  Identities=25%  Similarity=0.213  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      ++.+..+.++.+.+ |+|.|-++..-.     ...+++.- .+++.+.++++.    .++||.+.-  .    .+.+.++
T Consensus       139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~-----~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~--V----~t~e~A~  202 (368)
T PRK08649        139 SPQRAQELAPTVVEAGVDLFVIQGTVV-----SAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG--C----VTYTTAL  202 (368)
T ss_pred             CCcCHHHHHHHHHHCCCCEEEEeccch-----hhhccCCc-CCHHHHHHHHHH----CCCCEEEeC--C----CCHHHHH
Confidence            34445555555555 999999975311     11121110 145554444443    478988722  1    2345567


Q ss_pred             HHHHcCCcEEEEeecccCCC-----CC--CcCCHHHHHHHHHh-------c---CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          165 RIEKTGVSALAVHGRKVADR-----PR--DPAKWGEIADIVAA-------L---SIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~-----~~--~~~~~~~i~~i~~~-------~---~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      .+.++|+|.|.+ |+.....     ..  +.+.+..+.++++.       .   ++|||+.|||.+..|+.+++ ..|||
T Consensus       203 ~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAl-alGAd  280 (368)
T PRK08649        203 HLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAI-ACGAD  280 (368)
T ss_pred             HHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHH-HcCCC
Confidence            777799999977 5533210     01  22334445444321       1   59999999999999999999 59999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      +||+|+.+...
T Consensus       281 ~Vm~Gs~fa~t  291 (368)
T PRK08649        281 AVMLGSPLARA  291 (368)
T ss_pred             eecccchhccc
Confidence            99999998864

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=98.63  E-value=6.8e-07  Score=78.73  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=91.1

Q ss_pred             EEECCCCHHHHHHHHHHhhc-CCCEEEEc-cCCCccccccccccccccCChHHHHHHHHHHhhcccCcE--EEEecCCCC
Q 020428           80 FQMGTSDAVRALTAAKMVCK-DVAAIDIN-MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV--TCKIRLLKS  155 (326)
Q Consensus        80 vQl~g~~~~~~~~aa~~~~~-~~d~idlN-~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv--~vK~r~g~~  155 (326)
                      +.|...|++.+.+.++.+.+ |+|.|++. +.+|.-.            +.....++++++++..+.|+  -++.+    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~------------~~~~~~~~v~~i~~~~~~~v~v~lm~~----   66 (210)
T TIGR01163         3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP------------NLTFGPPVLEALRKYTDLPIDVHLMVE----   66 (210)
T ss_pred             chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC------------CcccCHHHHHHHHhcCCCcEEEEeeeC----
Confidence            45677888999999998887 89999996 3333321            11233455666665555664  34443    


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-cC
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-PA  189 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-~~  189 (326)
                        +..++++.+.++|+|.|++|+...+                                             ...++ ..
T Consensus        67 --~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~  144 (210)
T TIGR01163        67 --NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKF  144 (210)
T ss_pred             --CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccc
Confidence              2345677777888888887754210                                             00011 22


Q ss_pred             CHHH---HHHHHHhcC-----CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          190 KWGE---IADIVAALS-----IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       190 ~~~~---i~~i~~~~~-----iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++..   ++++++.++     +||.+.|||+ ++.+.+++ .+|+|++.+||+++..+.
T Consensus       145 ~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~-~~gad~iivgsai~~~~d  201 (210)
T TIGR01163       145 IPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELA-EAGADILVAGSAIFGADD  201 (210)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH-HcCCCEEEEChHHhCCCC
Confidence            3433   444444333     7999999996 79999999 699999999999876543

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=98.63  E-value=4.3e-07  Score=86.62  Aligned_cols=134  Identities=25%  Similarity=0.242  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428           87 AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus        87 ~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      +....+.++.+.+ |+|.|-++.-     .+...+.+. -.+|..+.+++++    .++||.+.-  ..+    .+.++.
T Consensus       141 ~~~~~e~a~~l~eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~--V~t----~e~A~~  204 (369)
T TIGR01304       141 PQNAREIAPIVVKAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG--VND----YTTALH  204 (369)
T ss_pred             CcCHHHHHHHHHHCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC--CCC----HHHHHH
Confidence            4455666666655 9999998731     122233111 1256655555543    478998722  122    344566


Q ss_pred             HHHcCCcEEEEeecccC---CCC--CCcCCHHHHHHHHHh-------c---CCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          166 IEKTGVSALAVHGRKVA---DRP--RDPAKWGEIADIVAA-------L---SIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~---~~~--~~~~~~~~i~~i~~~-------~---~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +.++|+|.|.+ |+...   ...  .+.+....+.++.+.       .   .+|||+.|||.+..|+.+++ ..|||+||
T Consensus       205 ~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAl-AlGAdaV~  282 (369)
T TIGR01304       205 LMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAI-ACGADAVV  282 (369)
T ss_pred             HHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHH-HcCCCEee
Confidence            66699999983 33221   111  123334455554322       2   39999999999999999999 59999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +|++++.-
T Consensus       283 iGt~~a~a  290 (369)
T TIGR01304       283 LGSPLARA  290 (369)
T ss_pred             eHHHHHhh
Confidence            99999863

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=98.59  E-value=2.7e-06  Score=75.72  Aligned_cols=127  Identities=17%  Similarity=0.230  Sum_probs=91.5

Q ss_pred             HHHHHHHhhcCCCEEEE--ccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---CCChHHHHHHHH
Q 020428           90 ALTAAKMVCKDVAAIDI--NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---LKSSQDTVELAR  164 (326)
Q Consensus        90 ~~~aa~~~~~~~d~idl--N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---g~~~~~~~e~a~  164 (326)
                      ..++.+.+.+|++.||+  |.|+|..            .+.+.+.+-+.++++.+ .|+.+|+=+   ..+.++....++
T Consensus        77 ~~e~~~Ai~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~  143 (221)
T PRK00507         77 AFEAKDAIANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACE  143 (221)
T ss_pred             HHHHHHHHHcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHH
Confidence            34444455569998886  4444433            45777787788888765 467777733   356677889999


Q ss_pred             HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          165 RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .+.++|+|+|-...    +...+.+..+.++.+++.+  +++|.++|||+|.+++.+++ ..||+-+-..++
T Consensus       144 ~~~~agadfIKTsT----G~~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i-~aGA~riGtS~~  210 (221)
T PRK00507        144 IAKEAGADFVKTST----GFSTGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMI-EAGATRLGTSAG  210 (221)
T ss_pred             HHHHhCCCEEEcCC----CCCCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHH-HcCcceEccCcH
Confidence            99999999775421    1223456788888888776  59999999999999999999 689987655544

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=98.58  E-value=1.6e-07  Score=85.11  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|++++||..-..    ..+.+.+.+++|++ +++||-..|||++ +++++++ ..||+-|++|+.++
T Consensus        43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l-~~Ga~rViigT~Av  115 (262)
T PLN02446         43 KSAAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYL-DAGASHVIVTSYVF  115 (262)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHH-HcCCCEEEEchHHH
Confidence            4789999999999999999987743    34667999999999 8999999999997 9999999 69999999999999


Q ss_pred             cC----cccccc
Q 020428          237 WN----ASIFSS  244 (326)
Q Consensus       237 ~~----P~lf~~  244 (326)
                      .|    |.++.+
T Consensus       116 ~~~~~~p~~v~~  127 (262)
T PLN02446        116 RDGQIDLERLKD  127 (262)
T ss_pred             hCCCCCHHHHHH
Confidence            99    877654

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.57  E-value=2.3e-07  Score=83.78  Aligned_cols=85  Identities=13%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|++.+++-.-+.... ..+.+++.+++|.+.+ +||...|||+|.+++++++ ..||+-|.+|+.++
T Consensus        30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~-g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l-~~Ga~rvvigT~a~  106 (241)
T PRK14114         30 KDPAELVEKLIEEGFTLIHVVDLSKAIE-NSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLR-KLGYRRQIVSSKVL  106 (241)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCccc-CCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHH-HCCCCEEEECchhh
Confidence            4789999999999999999987764321 3456899999999987 8999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       107 ~~p~~l~~  114 (241)
T PRK14114        107 EDPSFLKF  114 (241)
T ss_pred             CCHHHHHH
Confidence            99977654

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=98.57  E-value=7.7e-06  Score=73.54  Aligned_cols=89  Identities=16%  Similarity=0.171  Sum_probs=66.7

Q ss_pred             ccCcEEEEecC-C------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCC--C
Q 020428          142 LDVPVTCKIRL-L------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDV--F  212 (326)
Q Consensus       142 ~~~pv~vK~r~-g------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI--~  212 (326)
                      .++|+.+-... |      .+.++....++.+.+.|+|+|-+..         +.+.+.++++++.+++||++.||+  .
T Consensus       121 ~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~---------~~~~~~~~~i~~~~~~pvv~~GG~~~~  191 (235)
T cd00958         121 YGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY---------TGDAESFKEVVEGCPVPVVIAGGPKKD  191 (235)
T ss_pred             cCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC---------CCCHHHHHHHHhcCCCCEEEeCCCCCC
Confidence            48888875543 1      1233334447888899999998831         226888999999999999999987  5


Q ss_pred             CHHH----HHHHHHhcCCcEEEeccchhcCcc
Q 020428          213 EYDD----FQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       213 s~~d----~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |.++    +.+++ +.|++||.+||.++..|+
T Consensus       192 ~~~~~l~~~~~~~-~~Ga~gv~vg~~i~~~~d  222 (235)
T cd00958         192 SEEEFLKMVYDAM-EAGAAGVAVGRNIFQRPD  222 (235)
T ss_pred             CHHHHHHHHHHHH-HcCCcEEEechhhhcCCC
Confidence            6766    66777 699999999999886663

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=1.8e-06  Score=74.39  Aligned_cols=123  Identities=12%  Similarity=0.163  Sum_probs=90.7

Q ss_pred             HHHHHhhcCCCEEEEccCCCccccccccccccccCChH-HHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC
Q 020428           92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPE-LIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG  170 (326)
Q Consensus        92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~-~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G  170 (326)
                      +.-++++.|++.|-+.+-+              -.+|+ .+.++++..+ ..+.-+..-+       .+.|.+..+.++|
T Consensus        90 eVd~L~~~Ga~IIA~DaT~--------------R~RP~~~~~~~i~~~k-~~~~l~MAD~-------St~ee~l~a~~~G  147 (229)
T COG3010          90 EVDALAEAGADIIAFDATD--------------RPRPDGDLEELIARIK-YPGQLAMADC-------STFEEGLNAHKLG  147 (229)
T ss_pred             HHHHHHHCCCcEEEeeccc--------------CCCCcchHHHHHHHhh-cCCcEEEecc-------CCHHHHHHHHHcC
Confidence            3334444588887775432              23555 6777887743 2355455555       3466788889999


Q ss_pred             CcEE--EEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          171 VSAL--AVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       171 ~d~i--~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +|.|  |++|.|........+|+++++++.+ .+++||+-|.+.||+.+.+.+ +.||++|.||.+ +.+|
T Consensus       148 ~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~-~~Ga~aVvVGsA-ITRp  215 (229)
T COG3010         148 FDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAI-EIGADAVVVGSA-ITRP  215 (229)
T ss_pred             CcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHH-HhCCeEEEECcc-cCCH
Confidence            9998  5788887444344569999999988 799999999999999999999 699999999976 4444

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=98.57  E-value=2.8e-07  Score=82.57  Aligned_cols=86  Identities=23%  Similarity=0.369  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|++.+++........ ..+.+++.++++.+.+++|+...|||.+.+|+++++ ..||+.|++|+.++
T Consensus        28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~-g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~-~~Ga~~vvlgs~~l  105 (230)
T TIGR00007        28 DDPVEAAKKWEEEGAERIHVVDLDGAKE-GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLL-DLGVDRVIIGTAAV  105 (230)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCcccc-CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEEChHHh
Confidence            3688999999999999999976655422 245689999999999999999999999999999999 59999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|.++.+
T Consensus       106 ~d~~~~~~  113 (230)
T TIGR00007       106 ENPDLVKE  113 (230)
T ss_pred             hCHHHHHH
Confidence            99987665

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=98.57  E-value=2.1e-07  Score=83.91  Aligned_cols=71  Identities=15%  Similarity=0.078  Sum_probs=65.6

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      .+.|+.+++.|+++|||-.-      ..+ +.+.++++.+.+++||...|||++ +++++++ ..||+.|.+|+.++.+|
T Consensus        41 ~~~A~~~~~~Ga~~lHvVDL------g~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l-~aGa~rVvIGS~av~~~  111 (253)
T TIGR02129        41 SYYAKLYKDDGVKGCHVIML------GPN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWL-DEGASHVIVTSWLFTKG  111 (253)
T ss_pred             HHHHHHHHHcCCCEEEEEEC------CCC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHH-HcCCCEEEECcHHHhCC
Confidence            89999999999999999876      234 899999999999999999999998 9999999 69999999999999984

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PLN02591 tryptophan synthase

Probab=98.57  E-value=2.5e-06  Score=77.25  Aligned_cols=148  Identities=15%  Similarity=0.207  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .+.+...+.++.+.+ |+|.|||.+  |.+.-..+|      .--+|-  -+.+.+.++++++|+..++|+.  +-..++
T Consensus        13 P~~e~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i--lm~Y~N   88 (250)
T PLN02591         13 PDLDTTAEALRLLDACGADVIELGV--PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV--LFTYYN   88 (250)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE--EEeccc
Confidence            477888998887766 899999965  432211111      111111  2456788889999877788864  222222


Q ss_pred             h---HHHHHHHHHHHHcCCcEEEEeec--------------------------ccC-------------------CCCCC
Q 020428          156 S---QDTVELARRIEKTGVSALAVHGR--------------------------KVA-------------------DRPRD  187 (326)
Q Consensus       156 ~---~~~~e~a~~l~~~G~d~i~vh~r--------------------------~~~-------------------~~~~~  187 (326)
                      +   --..++++.+.++|+|++++-.-                          +..                   ..-+|
T Consensus        89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG  168 (250)
T PLN02591         89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTG  168 (250)
T ss_pred             HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcC
Confidence            2   12345566666666666654211                          100                   00011


Q ss_pred             -----cCC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 -----PAK-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 -----~~~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           +.+ -+.++++++..++||+..-||+|++++.+++ ..|||||.+|++++.
T Consensus       169 ~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~-~~GADGvIVGSalVk  223 (250)
T PLN02591        169 ARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIA-GWGADGVIVGSAMVK  223 (250)
T ss_pred             CCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence                 223 3447888888899999999999999999998 689999999999874

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.56  E-value=1.9e-06  Score=85.61  Aligned_cols=130  Identities=26%  Similarity=0.237  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHH
Q 020428           86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      +++.+..+..++..|++.|=++.  ++             .+.+.+.+.++.+++.. +.||.++-=      .+.+-++
T Consensus       226 ~~~~~e~a~~L~~agvdvivvD~--a~-------------g~~~~vl~~i~~i~~~~p~~~vi~g~v------~t~e~a~  284 (486)
T PRK05567        226 GADNEERAEALVEAGVDVLVVDT--AH-------------GHSEGVLDRVREIKAKYPDVQIIAGNV------ATAEAAR  284 (486)
T ss_pred             CcchHHHHHHHHHhCCCEEEEEC--CC-------------CcchhHHHHHHHHHhhCCCCCEEEecc------CCHHHHH
Confidence            34444444444544888764432  11             12345677888888887 889888542      3456678


Q ss_pred             HHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          165 RIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVAA---LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~~---~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .+.++|+|+|.+-..      ++.....+.++++.+.++++.   .++|||+.|||+++.|+.+++ ..|||+||+|+.+
T Consensus       285 ~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAl-a~GA~~v~~G~~~  363 (486)
T PRK05567        285 ALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKAL-AAGASAVMLGSML  363 (486)
T ss_pred             HHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHH-HhCCCEEEECccc
Confidence            888999999986221      111112345678888777764   479999999999999999999 5999999999987


Q ss_pred             hc
Q 020428          236 LW  237 (326)
Q Consensus       236 l~  237 (326)
                      -.
T Consensus       364 a~  365 (486)
T PRK05567        364 AG  365 (486)
T ss_pred             cc
Confidence            65

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.56  E-value=1.4e-06  Score=85.98  Aligned_cols=104  Identities=23%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHhhcc-cCcEEE-EecCCCChHHHHHHHHHHHHcCCcEEEEe---ec---ccCCCCCCcCCHHHHHHHHH
Q 020428          128 PELIHDILTMLKRNL-DVPVTC-KIRLLKSSQDTVELARRIEKTGVSALAVH---GR---KVADRPRDPAKWGEIADIVA  199 (326)
Q Consensus       128 p~~~~~iv~~v~~~~-~~pv~v-K~r~g~~~~~~~e~a~~l~~~G~d~i~vh---~r---~~~~~~~~~~~~~~i~~i~~  199 (326)
                      -..+.++++.+++.. +.+|.+ -+       .+.+-++.+.++|+|.|-|-   |.   |+.-...+.+++..+.++++
T Consensus       252 ~~~~~~~i~~ik~~~p~~~v~agnv-------~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~  324 (479)
T PRK07807        252 QEKMLEALRAVRALDPGVPIVAGNV-------VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA  324 (479)
T ss_pred             cHHHHHHHHHHHHHCCCCeEEeecc-------CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHH
Confidence            357788999999886 677766 33       45677888889999999752   11   11111224568899888877


Q ss_pred             ---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          200 ---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       200 ---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                         ..++|||+-|||.++.|+.+++ ..||++||+|+.+....
T Consensus       325 ~~~~~~~~via~ggi~~~~~~~~al-~~ga~~v~~g~~~ag~~  366 (479)
T PRK07807        325 AARELGAHVWADGGVRHPRDVALAL-AAGASNVMIGSWFAGTY  366 (479)
T ss_pred             HHHhcCCcEEecCCCCCHHHHHHHH-HcCCCeeeccHhhccCc
Confidence               4689999999999999999999 59999999999988643

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.53  E-value=9.6e-07  Score=87.14  Aligned_cols=128  Identities=18%  Similarity=0.101  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHH
Q 020428           88 VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRI  166 (326)
Q Consensus        88 ~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l  166 (326)
                      +....+..++..|+|.|-|-...+               +++.+.++++.+++.. ++||.+-.      ..+.+-++.|
T Consensus       225 ~~~~ra~~Lv~aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~g~------~~t~~~~~~l  283 (475)
T TIGR01303       225 DVGGKAKALLDAGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVAGN------VVSAEGVRDL  283 (475)
T ss_pred             cHHHHHHHHHHhCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEEec------cCCHHHHHHH
Confidence            344444455555888766654322               4578899999999876 78988831      1345668888


Q ss_pred             HHcCCcEEEEeecccC----CCC--CCcCCHHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          167 EKTGVSALAVHGRKVA----DRP--RDPAKWGEIADIV---AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~----~~~--~~~~~~~~i~~i~---~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .++|+|.|-|-+....    ..+  .+.+....+.+++   +..++|||+.|||.++.|+.+.+ ..||++||+|+-+-.
T Consensus       284 ~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kal-a~GA~~vm~g~~~ag  362 (475)
T TIGR01303       284 LEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALAL-AAGASNVMVGSWFAG  362 (475)
T ss_pred             HHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEeechhhcc
Confidence            8999999986433111    111  1233333333332   23489999999999999999999 699999999998765

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.52  E-value=4.1e-07  Score=81.72  Aligned_cols=84  Identities=13%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++|+.+.+.|++.+++-.-.+..  ..+.+.+.++++.+....||...|||+|.+|+++++ ..||+-|.+|+.++.
T Consensus        31 dP~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l-~~Ga~kvvigt~a~~  107 (232)
T PRK13586         31 NPIEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLL-SLDVNALVFSTIVFT  107 (232)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHH-HCCCCEEEECchhhC
Confidence            78999999999999999998776553  345678999999985546999999999999999999 689999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      ||.++++
T Consensus       108 ~p~~~~~  114 (232)
T PRK13586        108 NFNLFHD  114 (232)
T ss_pred             CHHHHHH
Confidence            9988775

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=98.52  E-value=1.1e-07  Score=85.40  Aligned_cols=86  Identities=23%  Similarity=0.366  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|++.+++..-.+... ..+.+++.++++.+.+.+||...|||+|.+|+++++ ..||+.|.+|+.++
T Consensus        29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~-g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll-~~Ga~~Vvigt~~~  106 (229)
T PF00977_consen   29 GDPVEVAKAFNEQGADELHIVDLDAAKE-GRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLL-DAGADRVVIGTEAL  106 (229)
T ss_dssp             CCHHHHHHHHHHTT-SEEEEEEHHHHCC-THHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHH-HTT-SEEEESHHHH
T ss_pred             cCHHHHHHHHHHcCCCEEEEEEccCccc-CchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHH-HhCCCEEEeChHHh
Confidence            4688999999999999999987755421 235689999999999999999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       107 ~~~~~l~~  114 (229)
T PF00977_consen  107 EDPELLEE  114 (229)
T ss_dssp             HCCHHHHH
T ss_pred             hchhHHHH
Confidence            99998775

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.51  E-value=2.4e-06  Score=84.95  Aligned_cols=129  Identities=16%  Similarity=0.142  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEK  168 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~  168 (326)
                      .+.++..++..|+|.|+|..  ...             ..+.+.+.++.+++.++.++.++..--    .+.+-++.+.+
T Consensus       243 ~~~ra~~Lv~aGvd~i~vd~--a~g-------------~~~~~~~~i~~ir~~~~~~~~V~aGnV----~t~e~a~~li~  303 (502)
T PRK07107        243 YAERVPALVEAGADVLCIDS--SEG-------------YSEWQKRTLDWIREKYGDSVKVGAGNV----VDREGFRYLAE  303 (502)
T ss_pred             HHHHHHHHHHhCCCeEeecC--ccc-------------ccHHHHHHHHHHHHhCCCCceEEeccc----cCHHHHHHHHH
Confidence            34455555555999998851  111             234557889999988765566655321    23455777778


Q ss_pred             cCCcEEEE--eec----ccCCCCCCcCCHHHHHHHHHhc-------C--CcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          169 TGVSALAV--HGR----KVADRPRDPAKWGEIADIVAAL-------S--IPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       169 ~G~d~i~v--h~r----~~~~~~~~~~~~~~i~~i~~~~-------~--iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +|+|+|.|  |+.    |+.+...+.+.+..+.++++..       +  +|||+-|||++..|+.+++ ..|||+||+||
T Consensus       304 aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAl-a~GA~~vm~G~  382 (502)
T PRK07107        304 AGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLAL-AMGADFIMLGR  382 (502)
T ss_pred             cCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHH-HcCCCeeeeCh
Confidence            99999987  222    3334445667788887777654       3  8999999999999999999 59999999999


Q ss_pred             chhc
Q 020428          234 GALW  237 (326)
Q Consensus       234 ~~l~  237 (326)
                      .+-.
T Consensus       383 ~~ag  386 (502)
T PRK07107        383 YFAR  386 (502)
T ss_pred             hhhc
Confidence            8876

>PRK07695 transcriptional regulator TenI; Provisional

Probab=98.49  E-value=1.4e-06  Score=76.65  Aligned_cols=76  Identities=30%  Similarity=0.361  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCC--CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          160 VELARRIEKTGVSALAVHGRKVAD--RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .+.+..+++.|+|++.++......  ....+..++.++++++.+++||++.||| +++++.+++ ..|+++|++||+++.
T Consensus       105 ~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~-~~Ga~gvav~s~i~~  182 (201)
T PRK07695        105 LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVL-AAGVSGIAVMSGIFS  182 (201)
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEHHHhc
Confidence            344677889999999764322111  1123457899999999899999999999 899999999 599999999999874

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.48  E-value=6.3e-07  Score=80.66  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+.+.|++.+++-.-.+..  ..+.+.+.++++.+.+.+||...|||+|.+|+++++ ..||+-|.+|+.++
T Consensus        35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l-~~Ga~~viigt~~~  111 (233)
T cd04723          35 SDPLDVARAYKELGFRGLYIADLDAIM--GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWL-KRGASRVIVGTETL  111 (233)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEeCcccc--CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHH-HcCCCeEEEcceec
Confidence            378899999999999999998887653  466789999999999999999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .| .++.+
T Consensus       112 ~~-~~~~~  118 (233)
T cd04723         112 PS-DDDED  118 (233)
T ss_pred             cc-hHHHH
Confidence            88 66554

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=98.48  E-value=5.4e-07  Score=80.06  Aligned_cols=86  Identities=22%  Similarity=0.371  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.+.|+.+.+.|+.++|+-.-+..-. .++.+.++++++.+.+++||-..|||+|.+++++++ ..|++-|.+|+.++
T Consensus        31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~-g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll-~~G~~rViiGt~av  108 (241)
T COG0106          31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA-GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALL-DAGVARVIIGTAAV  108 (241)
T ss_pred             CCHHHHHHHHHHcCCcEEEEeecccccc-CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHH-HCCCCEEEEeccee
Confidence            4789999999999999999876654322 356788999999999999999999999999999999 59999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       109 ~~p~~v~~  116 (241)
T COG0106         109 KNPDLVKE  116 (241)
T ss_pred             cCHHHHHH
Confidence            99998876

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=98.46  E-value=7.3e-07  Score=80.68  Aligned_cols=84  Identities=14%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.+.++.+++.|+..++|..-....  ..+.+.+.++++.+.+.+||...|||+|.+++++++ ..||+-|++|+.++.
T Consensus        32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l-~~Ga~~vvigT~a~~  108 (243)
T TIGR01919        32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAAL-TGGRARVNGGTAALE  108 (243)
T ss_pred             CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHH-HcCCCEEEECchhhC
Confidence            56788899999999999987665443  456689999999999999999999999999999999 589999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      ||+++.+
T Consensus       109 ~p~~~~~  115 (243)
T TIGR01919       109 NPWWAAA  115 (243)
T ss_pred             CHHHHHH
Confidence            9987765

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.45  E-value=6.4e-06  Score=75.11  Aligned_cols=154  Identities=15%  Similarity=0.185  Sum_probs=94.6

Q ss_pred             EEEEEC-C-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHh-hcccCc
Q 020428           78 VVFQMG-T-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLK-RNLDVP  145 (326)
Q Consensus        78 ~~vQl~-g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~-~~~~~p  145 (326)
                      ++.=+. | .+.+...++++.+.+ |+|.|||.+  |.+.-..+|      .--+|-  -+.+.+.+++++++ +..++|
T Consensus        14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p   91 (258)
T PRK13111         14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGI--PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIP   91 (258)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            444443 3 467888998887766 999999965  432211111      111111  14557788888888 445788


Q ss_pred             EEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEe--------------------------ecccC--------------
Q 020428          146 VTCKIRLLKSS---QDTVELARRIEKTGVSALAVH--------------------------GRKVA--------------  182 (326)
Q Consensus       146 v~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh--------------------------~r~~~--------------  182 (326)
                      +.+  -..+++   -...++++.+.++|+|++++.                          .-+..              
T Consensus        92 ~vl--m~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI  169 (258)
T PRK13111         92 IVL--MTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV  169 (258)
T ss_pred             EEE--EecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence            642  222221   123345555555555555542                          11100              


Q ss_pred             -----CCCCC-----cCC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          183 -----DRPRD-----PAK-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       183 -----~~~~~-----~~~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           .+.+|     +.+ .+.++++++..++||+..+||.|++++.++++ . ||||.+|++++.
T Consensus       170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv~  233 (258)
T PRK13111        170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALVK  233 (258)
T ss_pred             EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHHH
Confidence                 00011     222 45788999988999999999999999999994 4 999999999874

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=98.44  E-value=1e-05  Score=73.93  Aligned_cols=136  Identities=15%  Similarity=0.211  Sum_probs=96.8

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      ..|+...=|-.++-+.   .+....|+|+|=|...              .+ +++.+.++++..++. +..+.|-+.   
T Consensus       111 ~iPvl~kdfi~~~~qi---~~a~~~GAD~VlLi~~--------------~l-~~~~l~~li~~a~~l-Gl~~lvevh---  168 (260)
T PRK00278        111 SLPVLRKDFIIDPYQI---YEARAAGADAILLIVA--------------AL-DDEQLKELLDYAHSL-GLDVLVEVH---  168 (260)
T ss_pred             CCCEEeeeecCCHHHH---HHHHHcCCCEEEEEec--------------cC-CHHHHHHHHHHHHHc-CCeEEEEeC---
Confidence            3577754455555532   2223348888887532              12 356888888888764 777666663   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                          ..+.++.+.++|+|.|-+|+|+...   -..+++...++.+.+  .+|+|+-|||.|++++.+++ ..|+|+|.||
T Consensus       169 ----~~~E~~~A~~~gadiIgin~rdl~~---~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~-~~Gad~vlVG  240 (260)
T PRK00278        169 ----DEEELERALKLGAPLIGINNRNLKT---FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLA-KAGADAVLVG  240 (260)
T ss_pred             ----CHHHHHHHHHcCCCEEEECCCCccc---ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHH-HcCCCEEEEC
Confidence                1223455778899999999886542   245688888888765  36999999999999999999 5899999999


Q ss_pred             cchhcCcc
Q 020428          233 RGALWNAS  240 (326)
Q Consensus       233 r~~l~~P~  240 (326)
                      ++++..+.
T Consensus       241 saI~~~~d  248 (260)
T PRK00278        241 ESLMRADD  248 (260)
T ss_pred             HHHcCCCC
Confidence            99997654

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.43  E-value=8.7e-06  Score=74.76  Aligned_cols=126  Identities=13%  Similarity=0.225  Sum_probs=84.0

Q ss_pred             HHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEe-------cCCCChHHHHHH
Q 020428           93 AAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKI-------RLLKSSQDTVEL  162 (326)
Q Consensus        93 aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~-------r~g~~~~~~~e~  162 (326)
                      +.+.+..|+|.|++-.-          .|+.   ..+...+.+.++++.+   ++|+.+-.       ....+.+.....
T Consensus        99 ve~A~~~Gad~v~~~~~----------~g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a  165 (267)
T PRK07226         99 VEEAIKLGADAVSVHVN----------VGSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHA  165 (267)
T ss_pred             HHHHHHcCCCEEEEEEe----------cCCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHH
Confidence            33344459998887531          1110   0223344455554443   78877732       112334455566


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC--CHHHHHHHHH---hcCCcEEEeccchhc
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF--EYDDFQRIKT---AAGASSVMAARGALW  237 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~--s~~d~~~~l~---~~Gad~VmiGr~~l~  237 (326)
                      ++.+.+.|+|+|-..       +.  .+.+.++++.+..++||++.|||.  |.+++.++++   +.||+|+.+||.++.
T Consensus       166 ~~~a~e~GAD~vKt~-------~~--~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~  236 (267)
T PRK07226        166 ARVAAELGADIVKTN-------YT--GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ  236 (267)
T ss_pred             HHHHHHHCCCEEeeC-------CC--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence            788889999999554       22  257888888887899999999999  8888887752   589999999999887


Q ss_pred             Ccc
Q 020428          238 NAS  240 (326)
Q Consensus       238 ~P~  240 (326)
                      .|.
T Consensus       237 ~~~  239 (267)
T PRK07226        237 HED  239 (267)
T ss_pred             CCC
Confidence            554

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=98.43  E-value=1.2e-06  Score=87.42  Aligned_cols=85  Identities=16%  Similarity=0.209  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCC--CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCH-----------HHHHHHHHh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVAD--RPRDPAKWGEIADIVAALSIPVIANGDVFEY-----------DDFQRIKTA  223 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~-----------~d~~~~l~~  223 (326)
                      .+++++|+.+.+.|+|.|++-..++..  ......+++.++++++.+.+|+.+.|||+|.           +++++++ .
T Consensus       267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l-~  345 (538)
T PLN02617        267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF-R  345 (538)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH-H
Confidence            479999999999999999998887632  2223345899999999999999999999997           6699999 6


Q ss_pred             cCCcEEEeccchhcCcccc
Q 020428          224 AGASSVMAARGALWNASIF  242 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf  242 (326)
                      .|||-|.||++++.||..|
T Consensus       346 ~GadkV~i~s~Av~~~~~~  364 (538)
T PLN02617        346 SGADKISIGSDAVYAAEEY  364 (538)
T ss_pred             cCCCEEEEChHHHhChhhh
Confidence            9999999999999998433

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=98.42  E-value=3.4e-05  Score=71.63  Aligned_cols=141  Identities=15%  Similarity=0.109  Sum_probs=95.3

Q ss_pred             EEEEE-CCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           78 VVFQM-GTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        78 ~~vQl-~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +..+- ++.+.++..+.|+++.+  +-++|-|-.--.         .-.++.|+....+-.+.+.+. +.-+.+=+.   
T Consensus       139 ~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e---------~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~---  205 (326)
T PRK11840        139 YLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGD---------AKTLYPDMVETLKATEILVKE-GFQVMVYCS---  205 (326)
T ss_pred             ECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCC---------CCCcccCHHHHHHHHHHHHHC-CCEEEEEeC---
Confidence            33444 35688999999999887  557776653211         123555565555544444322 444433332   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                         +....++.+++.|+-++.-- -..-+...+..+.+.++.+.+..++||+.-+||.+++|+..++ +.|||||.+.+|
T Consensus       206 ---~d~~~a~~l~~~g~~avmPl-~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Am-elGadgVL~nSa  280 (326)
T PRK11840        206 ---DDPIAAKRLEDAGAVAVMPL-GAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAM-ELGCDGVLMNTA  280 (326)
T ss_pred             ---CCHHHHHHHHhcCCEEEeec-cccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEEcce
Confidence               44678999999999443321 1111222344488899999999999999999999999999999 699999999999


Q ss_pred             hh
Q 020428          235 AL  236 (326)
Q Consensus       235 ~l  236 (326)
                      +.
T Consensus       281 Ia  282 (326)
T PRK11840        281 IA  282 (326)
T ss_pred             ec
Confidence            76

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=98.42  E-value=5.3e-06  Score=72.96  Aligned_cols=145  Identities=11%  Similarity=0.145  Sum_probs=86.0

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCEEEEccC-CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAAIDINMG-CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~g-cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      +.+.|..-|+..+.+.++.+.+ |++.|.+.+. .+..            .+..+-.++++.+++.++.|+.+.+-. . 
T Consensus         2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~v~l~~-~-   67 (211)
T cd00429           2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFV------------PNLTFGPPVVKALRKHTDLPLDVHLMV-E-   67 (211)
T ss_pred             ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCC------------CccccCHHHHHHHHhhCCCcEEEEeee-C-
Confidence            4567788899999998888877 8999988421 1100            001111234555554433444333221 1 


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-cC
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-PA  189 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-~~  189 (326)
                        +..++++.+.++|+|++++|+...+                                             ...++ ..
T Consensus        68 --d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~  145 (211)
T cd00429          68 --NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKF  145 (211)
T ss_pred             --CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCccc
Confidence              2234455555666777666643210                                             00011 22


Q ss_pred             CH---HHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          190 KW---GEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       190 ~~---~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++   +.+.++++..     ++|+++.|||+. +++.+++ ..|+|+|.+||+++..+.
T Consensus       146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~-~~gad~iivgsai~~~~~  202 (211)
T cd00429         146 IPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLA-EAGADVLVAGSALFGSDD  202 (211)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHH-HcCCCEEEECHHHhCCCC
Confidence            23   3445555554     389999999995 9999999 699999999999886554

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=98.41  E-value=7.1e-06  Score=71.32  Aligned_cols=145  Identities=18%  Similarity=0.185  Sum_probs=106.9

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEE-ccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDI-NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL  152 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idl-N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~  152 (326)
                      .-|+.|+  +-+|+.|..+.+   .|+|.||| |+.|=+..        ...-..+.+.++.++.|+-+ ++|++|-+.-
T Consensus        61 ~lPICVS--aVep~~f~~aV~---AGAdliEIGNfDsFY~q--------Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH  127 (242)
T PF04481_consen   61 NLPICVS--AVEPELFVAAVK---AGADLIEIGNFDSFYAQ--------GRRFSAEEVLALTRETRSLLPDITLSVTVPH  127 (242)
T ss_pred             CCCeEee--cCCHHHHHHHHH---hCCCEEEecchHHHHhc--------CCeecHHHHHHHHHHHHHhCCCCceEEecCc
Confidence            3578774  678998887654   58999999 55554432        22335678899999999887 7889988765


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc---------CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP---------AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~---------~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      ....++=+++|..|++.|+|.|.--|.+.....+..         +.+.....|.+.+++||+...|+.+..-= -.+ .
T Consensus       128 iL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~P-mAi-a  205 (242)
T PF04481_consen  128 ILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAP-MAI-A  205 (242)
T ss_pred             cccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHH-HHH-H
Confidence            445567789999999999999988887766443221         12344456777889999999999866543 345 4


Q ss_pred             cCCcEEEeccc
Q 020428          224 AGASSVMAARG  234 (326)
Q Consensus       224 ~Gad~VmiGr~  234 (326)
                      .||.||-||++
T Consensus       206 aGAsGVGVGSa  216 (242)
T PF04481_consen  206 AGASGVGVGSA  216 (242)
T ss_pred             cCCcccchhHH
Confidence            89999999987

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=98.40  E-value=1.1e-05  Score=71.38  Aligned_cols=133  Identities=16%  Similarity=0.152  Sum_probs=92.8

Q ss_pred             CCCH--HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-CChHHH
Q 020428           84 TSDA--VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-KSSQDT  159 (326)
Q Consensus        84 g~~~--~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-~~~~~~  159 (326)
                      |..+  ....++...+..|+|.||+-+          .+|...-.+.+.+.+-+.++++.+ ++|+-|-+-.+ .+.++.
T Consensus        65 G~~~~~~K~~E~~~Av~~GAdEiDvv~----------n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei  134 (211)
T TIGR00126        65 GASTTDVKLYETKEAIKYGADEVDMVI----------NIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI  134 (211)
T ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEeec----------chHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence            5443  355566666666999999865          245555567788888888888877 56665544434 455677


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ...++...++|+|+|-..    .+...+++..+-++.+++.+  ++||-++|||+|.+++.+++ ..|++-+-.
T Consensus       135 ~~a~~ia~eaGADfvKTs----TGf~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i-~aGa~riGt  203 (211)
T TIGR00126       135 RKACEICIDAGADFVKTS----TGFGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMI-EAGASRIGA  203 (211)
T ss_pred             HHHHHHHHHhCCCEEEeC----CCCCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHH-HHhhHHhCc
Confidence            788899999999999553    22223445566666555554  69999999999999999999 578775433

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>cd02812 PcrB_like PcrB_like proteins

Probab=98.36  E-value=2.3e-06  Score=75.77  Aligned_cols=84  Identities=13%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .++++....|...+..|...+-+.   ..+   ...+.+.++++++.+ ++|+++.|||+|++++++++ ..|||+|.+|
T Consensus       132 ~~~e~~~ayA~aae~~g~~ivyLe---~SG---~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVG  204 (219)
T cd02812         132 LKPEDAAAYALAAEYLGMPIVYLE---YSG---AYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMA-EAGADTIVVG  204 (219)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeC---CCC---CcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEC
Confidence            456778888999999995555454   111   125789999999998 99999999999999999999 6899999999


Q ss_pred             cchhcCcccccc
Q 020428          233 RGALWNASIFSS  244 (326)
Q Consensus       233 r~~l~~P~lf~~  244 (326)
                      +++..||.++.+
T Consensus       205 sai~~~p~~~~~  216 (219)
T cd02812         205 NIVEEDPNAALE  216 (219)
T ss_pred             chhhCCHHHHHH
Confidence            999999887764

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=98.34  E-value=3.4e-05  Score=67.88  Aligned_cols=181  Identities=17%  Similarity=0.141  Sum_probs=108.4

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCc--eecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC-CHHH
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEE--IIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS-DAVR   89 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~-~~~~   89 (326)
                      .|.++..--..+.+.|++++--=+  .|++.+..      .      .     -..+.+.++..-  -.+-++-+ +++.
T Consensus         4 CGi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~------~------~-----a~~l~~~~~~~~--~~V~v~vn~~~~~   64 (203)
T cd00405           4 CGITTLEDALAAAEAGADAIGFIFAPKSPRYVSP------E------Q-----AREIVAALPPFV--KRVGVFVNEDLEE   64 (203)
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEecCCCCCCCCCH------H------H-----HHHHHHhCCCCC--cEEEEEeCCCHHH
Confidence            578888888888899987663111  11111100      0      0     001222233211  22333433 4555


Q ss_pred             HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428           90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT  169 (326)
Q Consensus        90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~  169 (326)
                      ..+.+..+  ++|+|-||-.-                ++    +.++.+++..+.++...+.....  ...+. ......
T Consensus        65 i~~ia~~~--~~d~Vqlhg~e----------------~~----~~~~~l~~~~~~~~i~~i~~~~~--~~~~~-~~~~~~  119 (203)
T cd00405          65 ILEIAEEL--GLDVVQLHGDE----------------SP----EYCAQLRARLGLPVIKAIRVKDE--EDLEK-AAAYAG  119 (203)
T ss_pred             HHHHHHhc--CCCEEEECCCC----------------CH----HHHHHHHhhcCCcEEEEEecCCh--hhHHH-hhhccc
Confidence            55554432  78999997421                12    23555666556666644443221  11222 233457


Q ss_pred             CCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcC-CcEEEeccchhcCccc
Q 020428          170 GVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG-ASSVMAARGALWNASI  241 (326)
Q Consensus       170 G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~G-ad~VmiGr~~l~~P~l  241 (326)
                      |+|++.+...++...  ...+.+|+.+++++  .++|+++.||| |++.+.++++ .+ ++||.+++++...|..
T Consensus       120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~-~~~~~gvdv~S~ie~~pg~  190 (203)
T cd00405         120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIR-LVRPYGVDVSSGVETSPGI  190 (203)
T ss_pred             cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHH-hcCCCEEEcCCcccCCCCC
Confidence            999998876665432  23467999998876  68999999999 8999999995 56 9999999998877765

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=98.34  E-value=3.5e-05  Score=67.79  Aligned_cols=138  Identities=15%  Similarity=0.202  Sum_probs=92.2

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .+++-+--.|+..+  .++.+. .|+|.|-+|+-+|                +..+.++++.+++. ++++.+-+-   +
T Consensus        54 ~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~----------------~~~~~~~i~~~~~~-g~~~~~~~~---~  111 (206)
T TIGR03128        54 KVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVAD----------------DATIKGAVKAAKKH-GKEVQVDLI---N  111 (206)
T ss_pred             EEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEec---C
Confidence            46655533365543  233333 4999999886543                13456677777664 888877641   2


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +.+..+.++.+.+.|+|.+.++.....+.. ++..++.++++++.++ .++...||| +++.+.+++ ..|+|+|.+||+
T Consensus       112 ~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~-~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~-~~Ga~~v~vGsa  188 (206)
T TIGR03128       112 VKDKVKRAKELKELGADYIGVHTGLDEQAK-GQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVI-KLGPDIVIVGGA  188 (206)
T ss_pred             CCChHHHHHHHHHcCCCEEEEcCCcCcccC-CCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHH-HcCCCEEEEeeh
Confidence            234556677778889999998754443333 3445677888887665 445569999 789999999 699999999999


Q ss_pred             hhcCc
Q 020428          235 ALWNA  239 (326)
Q Consensus       235 ~l~~P  239 (326)
                      ++..+
T Consensus       189 i~~~~  193 (206)
T TIGR03128       189 ITKAA  193 (206)
T ss_pred             hcCCC
Confidence            76543

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=98.32  E-value=1.5e-05  Score=70.05  Aligned_cols=134  Identities=14%  Similarity=0.141  Sum_probs=97.6

Q ss_pred             CCCCHHH--HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-CChH
Q 020428           83 GTSDAVR--ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQ  157 (326)
Q Consensus        83 ~g~~~~~--~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~  157 (326)
                      +|.++..  ..++-..++.|+|.||+=.          ..|...-.+.+.+.+-+++++++++-++.+|.=+  + .+.+
T Consensus        71 ~G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~e  140 (228)
T COG0274          71 LGANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDE  140 (228)
T ss_pred             CCCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHH
Confidence            3555543  5555556666999999732          2455556789999999999999986444555543  3 4566


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +....++...++|+|+|-    |..+...+.+..+-+.-+++.+  .+.|=++|||+|.+|+..++ ..|+.-+-.
T Consensus       141 e~~~A~~i~~~aGAdFVK----TSTGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i-~aga~RiGt  211 (228)
T COG0274         141 EKRKACEIAIEAGADFVK----TSTGFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMI-EAGATRIGT  211 (228)
T ss_pred             HHHHHHHHHHHhCCCEEE----cCCCCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHH-HHhHHHhcc
Confidence            678889999999999994    4444445677788887777776  48888999999999999999 577554433

>PLN02334 ribulose-phosphate 3-epimerase

Probab=98.30  E-value=3e-05  Score=69.53  Aligned_cols=139  Identities=10%  Similarity=0.146  Sum_probs=91.9

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccC-CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMG-CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~g-cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      +.++.+.|..++|+++.+.+  ...|+|+|-+|.+ +.                .+...+.++.+++. +.-+.+-+.  
T Consensus        65 ~~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~----------------~d~~~~~~~~i~~~-g~~iGls~~--  123 (229)
T PLN02334         65 DAPLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAS----------------TIHLHRLIQQIKSA-GMKAGVVLN--  123 (229)
T ss_pred             CCcEEEEeccCCHHHHHHHH--HHcCCCEEEEeecccc----------------chhHHHHHHHHHHC-CCeEEEEEC--
Confidence            34678899999999988766  3348999999876 12                12334556666543 332333232  


Q ss_pred             CChHHHHHHHHHHHHcC-CcEEE---EeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          154 KSSQDTVELARRIEKTG-VSALA---VHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G-~d~i~---vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      +  .+..+.++.+.+.| +|+|.   ++..+..+. ..+...+.++++++. .++||.+-||| +.+++..+. ..|+|+
T Consensus       124 ~--~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~-~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~-~aGad~  198 (229)
T PLN02334        124 P--GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS-FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAA-EAGANV  198 (229)
T ss_pred             C--CCCHHHHHHHHhccCCCEEEEEEEecCCCccc-cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHH-HcCCCE
Confidence            1  13345555555554 99995   444333332 234456677777776 36899999999 699999999 699999


Q ss_pred             EEeccchhcCc
Q 020428          229 VMAARGALWNA  239 (326)
Q Consensus       229 VmiGr~~l~~P  239 (326)
                      +.+||+++..+
T Consensus       199 vvvgsai~~~~  209 (229)
T PLN02334        199 IVAGSAVFGAP  209 (229)
T ss_pred             EEEChHHhCCC
Confidence            99999977544

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=98.30  E-value=4.3e-05  Score=66.91  Aligned_cols=138  Identities=20%  Similarity=0.224  Sum_probs=91.2

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      +.|+++.+--.++...  .++.+.+ |+|+|-++.-.                .++.+.++++.+++. ++++.+-+   
T Consensus        53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~~-g~~~~v~~---  110 (202)
T cd04726          53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKKY-GKEVQVDL---  110 (202)
T ss_pred             CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHHc-CCeEEEEE---
Confidence            3578777655555422  1233334 99999987521                234566777777754 66665532   


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVH-GRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .++.+..+..+ +.+.|+|.+.++ +++.. ....+...+.++++++..++||++.|||+ ++++.+++ +.|||+|.+|
T Consensus       111 ~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~-~~Gad~vvvG  186 (202)
T cd04726         111 IGVEDPEKRAK-LLKLGVDIVILHRGIDAQ-AAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFK-KAGADIVIVG  186 (202)
T ss_pred             eCCCCHHHHHH-HHHCCCCEEEEcCccccc-ccCCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHH-hcCCCEEEEe
Confidence            11223344444 677899999885 33222 22134457788888876789999999995 99999999 6899999999


Q ss_pred             cchhcC
Q 020428          233 RGALWN  238 (326)
Q Consensus       233 r~~l~~  238 (326)
                      |++...
T Consensus       187 sai~~~  192 (202)
T cd04726         187 RAITGA  192 (202)
T ss_pred             ehhcCC
Confidence            997643

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=98.28  E-value=6.3e-05  Score=68.13  Aligned_cols=206  Identities=17%  Similarity=0.122  Sum_probs=130.5

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEeCceecc-cccccccccccccCcccccccCCcceeeecccCCCCcEEEEE--
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDH-KLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM--   82 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl--   82 (326)
                      ..+++|  ++-|....+++.+.|.+.+++.-.... ....      .+.+...+.+.  ....-...+....|+++-+  
T Consensus         9 ~~i~~~--~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~------pD~~~~~~~e~--~~~~~~I~~~~~~Pv~~D~~~   78 (243)
T cd00377           9 GPLVLP--GAWDALSARLAERAGFKAIYTSGAGVAASLGL------PDGGLLTLDEV--LAAVRRIARAVDLPVIADADT   78 (243)
T ss_pred             CcEEec--CCCCHHHHHHHHHcCCCEEEeccHHHHHhcCC------CCCCcCCHHHH--HHHHHHHHhhccCCEEEEcCC
Confidence            445544  777999999999999988775422211 1111      11111111000  0001122233456888876  


Q ss_pred             CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccC--cEEEEec-----CC-
Q 020428           83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV--PVTCKIR-----LL-  153 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~--pv~vK~r-----~g-  153 (326)
                      +..+++...+.++.+.+ |+++|.|.=+..-+ . .+..|..-+-.++...+.+++++++.+-  ++.+=-|     .+ 
T Consensus        79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k-~-~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~  156 (243)
T cd00377          79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPK-K-CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE  156 (243)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-c-ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC
Confidence            22366788888877766 99999996553311 1 1222444455777777778888776542  5555555     23 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC--CC--CCHHHHHHHHHhcCCcEE
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG--DV--FEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG--gI--~s~~d~~~~l~~~Gad~V  229 (326)
                      ...+++++-++.+.++|+|.+-+++..         +.+.++++.+.++.||+.+-  +-  .+.++   +- +.|+..|
T Consensus       157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~---------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~---l~-~lG~~~v  223 (243)
T cd00377         157 EGLDEAIERAKAYAEAGADGIFVEGLK---------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAE---LA-ELGVRRV  223 (243)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHH---HH-HCCCeEE
Confidence            457889999999999999999998653         67899999999999998762  22  24443   44 6899999


Q ss_pred             Eeccchh
Q 020428          230 MAARGAL  236 (326)
Q Consensus       230 miGr~~l  236 (326)
                      .+|-.++
T Consensus       224 ~~~~~~~  230 (243)
T cd00377         224 SYGLALL  230 (243)
T ss_pred             EEChHHH
Confidence            9987654

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=98.26  E-value=3e-05  Score=70.33  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=97.6

Q ss_pred             CCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-
Q 020428           74 ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-  152 (326)
Q Consensus        74 ~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-  152 (326)
                      -..|++||+.-||+......|..  .|+++|-+|.-|=.. +...   +.+..+...+.+.-+.+..  ++.|...+.. 
T Consensus        78 ~~~p~GvnvL~nd~~aal~iA~a--~ga~FIRv~~~~g~~-~~d~---G~~~~~a~e~~r~r~~l~~--~v~i~adV~~k  149 (257)
T TIGR00259        78 VSIPLGINVLRNDAVAALAIAMA--VGAKFIRVNVLTGVY-ASDQ---GIIEGNAGELIRYKKLLGS--EVKILADIVVK  149 (257)
T ss_pred             cCCCeeeeeecCCCHHHHHHHHH--hCCCEEEEccEeeeE-eccc---ccccccHHHHHHHHHHcCC--CcEEEeceeec
Confidence            34589999998887655554443  378888887533222 1111   1233344444444444442  4444433332 


Q ss_pred             -C--CChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          153 -L--KSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       153 -g--~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                       +  ....+..+.++.....| +|+|+|+|....    .+.+|+.++++++.. ++||+.+|||+ ++.+.++++ . +|
T Consensus       150 h~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG----~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~-~-ad  222 (257)
T TIGR00259       150 HAVHLGNRDLESIALDTVERGLADAVILSGKTTG----TEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLS-I-AD  222 (257)
T ss_pred             ccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC----CCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHh-h-CC
Confidence             1  12345667777777666 999999998544    356899999998855 79999999995 888999995 3 99


Q ss_pred             EEEeccchh
Q 020428          228 SVMAARGAL  236 (326)
Q Consensus       228 ~VmiGr~~l  236 (326)
                      ||.+|+++=
T Consensus       223 GviVgS~~K  231 (257)
T TIGR00259       223 GVIVATTIK  231 (257)
T ss_pred             EEEECCCcc
Confidence            999999855

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=98.25  E-value=3.6e-06  Score=75.08  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh-cCCcEEEeccch
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA-AGASSVMAARGA  235 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~-~Gad~VmiGr~~  235 (326)
                      .++.++|+.+.+.|+|.+++-.-.+..  ..+.+.+.++++.+.  +|+...|||+|.+|+++++.. .+|+-|.+|+.+
T Consensus        36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a  111 (221)
T TIGR00734        36 SSPDDAAKVIEEIGARFIYIADLDRIV--GLGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVATET  111 (221)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEEccccc--CCcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecChh
Confidence            478899999999999999998776642  456789999999987  499999999999999999642 369999999999


Q ss_pred             hcCcccccc
Q 020428          236 LWNASIFSS  244 (326)
Q Consensus       236 l~~P~lf~~  244 (326)
                      +.||.++.+
T Consensus       112 ~~~p~~l~~  120 (221)
T TIGR00734       112 LDITELLRE  120 (221)
T ss_pred             hCCHHHHHH
Confidence            999998776

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=98.24  E-value=6.4e-05  Score=66.19  Aligned_cols=124  Identities=15%  Similarity=0.191  Sum_probs=84.1

Q ss_pred             HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-CChHHHHHHHHHHH
Q 020428           90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-KSSQDTVELARRIE  167 (326)
Q Consensus        90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-~~~~~~~e~a~~l~  167 (326)
                      ..++-+.+..|+|.||+.+          .+|...-.+.+.+.+-+.++++.+ +.|+-+=+-.+ .+.+.....++...
T Consensus        72 ~~eve~A~~~GAdevdvv~----------~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~  141 (203)
T cd00959          72 VAEAREAIADGADEIDMVI----------NIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAI  141 (203)
T ss_pred             HHHHHHHHHcCCCEEEEee----------cHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            3334444445999999865          244434456676777778887776 45555533333 34567788889999


Q ss_pred             HcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          168 KTGVSALAVH-GRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       168 ~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      ++|+|+|-.. |.     ..+++..+.++.+++.  .++||-++|||+|.+++.+++ ..||+-+
T Consensus       142 e~GaD~IKTsTG~-----~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~-~~g~~ri  200 (203)
T cd00959         142 EAGADFIKTSTGF-----GPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMI-EAGATRI  200 (203)
T ss_pred             HhCCCEEEcCCCC-----CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HhChhhc
Confidence            9999999663 22     2234555555555554  469999999999999999999 5787753

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=98.21  E-value=6.6e-05  Score=66.26  Aligned_cols=145  Identities=21%  Similarity=0.242  Sum_probs=94.5

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc----cccccc------ccccCChHHHHHHH----------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS----VSGGMG------AALLSKPELIHDIL----------  135 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~----~~~~~G------~~l~~~p~~~~~iv----------  135 (326)
                      |++.=+-+.++++..+.++.+.+ |+..+|+-+-.|....    .+..++      +.-.-+++.+...+          
T Consensus        11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp   90 (206)
T PRK09140         11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP   90 (206)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence            56666778899999999998877 8999999765553210    011111      11122333333222          


Q ss_pred             -------HHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEE
Q 020428          136 -------TMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVI  206 (326)
Q Consensus       136 -------~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi  206 (326)
                             +..+ ..+.++..-+       .+.+.+....+.|+|+|.+..       .....++.++.+++..  ++|++
T Consensus        91 ~~~~~v~~~~~-~~~~~~~~G~-------~t~~E~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipvv  155 (206)
T PRK09140         91 NTDPEVIRRAV-ALGMVVMPGV-------ATPTEAFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPVF  155 (206)
T ss_pred             CCCHHHHHHHH-HCCCcEEccc-------CCHHHHHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeEE
Confidence                   2211 1133332222       223446667789999998733       2234578899998877  49999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.||| |.+.+.+++ ..|+++|.++++++..
T Consensus       156 aiGGI-~~~n~~~~~-~aGa~~vav~s~l~~~  185 (206)
T PRK09140        156 AVGGV-TPENLAPYL-AAGAAGFGLGSALYRP  185 (206)
T ss_pred             EECCC-CHHHHHHHH-HCCCeEEEEehHhccc
Confidence            99999 789999999 6999999999998763

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=98.19  E-value=6.8e-05  Score=65.30  Aligned_cols=143  Identities=18%  Similarity=0.245  Sum_probs=91.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc----cccccc-----cccccCChHHHHH-------------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF----SVSGGM-----GAALLSKPELIHD-------------  133 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~----~~~~~~-----G~~l~~~p~~~~~-------------  133 (326)
                      |++.=+-+.+++++...++.+.+ |++.|++.+-.|...    ..++.+     |+...-+++.+.+             
T Consensus         5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~   84 (190)
T cd00452           5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG   84 (190)
T ss_pred             cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence            45555667888888888887766 788888866544210    011111     3323333333332             


Q ss_pred             ----HHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428          134 ----ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN  208 (326)
Q Consensus       134 ----iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n  208 (326)
                          +++..+. .+.++.+-+.       +.+.+..+.++|+|+|-+...       .+...+.++.+++.. ++|+++.
T Consensus        85 ~~~~~~~~~~~-~~~~~i~gv~-------t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~~~p~~a~  149 (190)
T cd00452          85 LDPEVVKAANR-AGIPLLPGVA-------TPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFPQVRFMPT  149 (190)
T ss_pred             CCHHHHHHHHH-cCCcEECCcC-------CHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCCCCeEEEe
Confidence                3333222 2444443221       334466667899999998431       222467888888766 5999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ||| +++.+.+++ ..|+++|.+|+.+.
T Consensus       150 GGI-~~~n~~~~~-~~G~~~v~v~s~i~  175 (190)
T cd00452         150 GGV-SLDNAAEWL-AAGVVAVGGGSLLP  175 (190)
T ss_pred             CCC-CHHHHHHHH-HCCCEEEEEchhcc
Confidence            999 899999999 68999999999977

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=98.19  E-value=3.1e-05  Score=68.97  Aligned_cols=140  Identities=15%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             EEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCC
Q 020428           79 VFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLK  154 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~  154 (326)
                      ..+|...|...+.+..+.+.+ |+|.  +|+==|+=+|+             ..+--++++++++. ++.|+.|=+=.  
T Consensus         3 ~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn-------------~tfg~~~i~~i~~~~~~~~~dvHLMv--   67 (220)
T PRK08883          3 APSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN-------------LTFGAPICKALRDYGITAPIDVHLMV--   67 (220)
T ss_pred             chhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCc-------------cccCHHHHHHHHHhCCCCCEEEEecc--
Confidence            456778888888888888876 7775  45533443332             12223567888876 57888776643  


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC--
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD--  187 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~--  187 (326)
                        .++..+++.+.++|+|.|++|.-...                                             .++.|  
T Consensus        68 --~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~  145 (220)
T PRK08883         68 --KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQS  145 (220)
T ss_pred             --CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCce
Confidence              34667788889999999999854211                                             11111  


Q ss_pred             --cCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 --PAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 --~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                        +..++.++++++..     ++||.+-|||+ .+.+..+. +.|||++++|+++..
T Consensus       146 fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~-~aGAd~vVvGSaIf~  200 (220)
T PRK08883        146 FIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIA-EAGADMFVAGSAIFG  200 (220)
T ss_pred             ecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-HcCCCEEEEeHHHhC
Confidence              22355667776654     48999999998 89999999 699999999999654

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=98.19  E-value=5e-05  Score=67.37  Aligned_cols=146  Identities=11%  Similarity=0.165  Sum_probs=83.3

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      +.+.|...|+..+.+.++.+.+ |++.|.+...        +   +.+..+..+..+.++++++.+..++.+-+-. .  
T Consensus         6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d---~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v-~--   71 (220)
T PRK05581          6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D---GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMV-E--   71 (220)
T ss_pred             EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c---CCcCCCcCcCHHHHHHHHhcCCCcEEEEeee-C--
Confidence            6678888899899888888877 8999888321        1   0111111122345555555443333222211 1  


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccC----------------------------------------------CCCCCcCC
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVA----------------------------------------------DRPRDPAK  190 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~----------------------------------------------~~~~~~~~  190 (326)
                       +..+.+..+.++|+|++++|+...+                                              +......+
T Consensus        72 -d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~  150 (220)
T PRK05581         72 -NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI  150 (220)
T ss_pred             -CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence             2233344445667777666653210                                              00001223


Q ss_pred             HHHH---HHHHHhcC-----CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          191 WGEI---ADIVAALS-----IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       191 ~~~i---~~i~~~~~-----iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +..+   .++++..+     .+|...|||+. +++.+++ ..|+|+|.+||+++.+++
T Consensus       151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~-~~GaD~vvvgSai~~~~d  206 (220)
T PRK05581        151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECA-EAGADVFVAGSAVFGAPD  206 (220)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHH-HcCCCEEEEChhhhCCCC
Confidence            4333   34443332     33557799987 8999988 589999999999886554

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=98.18  E-value=4.1e-05  Score=69.38  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=96.5

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--  152 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--  152 (326)
                      +.|++||+.-+++......|..  .|+++|-+|.=|=..-  .+  .+.+..+...+.+.-+.+..  ++.|...+..  
T Consensus        80 ~~p~GVnvL~nd~~aalaiA~A--~ga~FIRv~~~~g~~~--~d--~G~~~~~a~e~~r~R~~l~a--~v~ilaDV~~kh  151 (254)
T PF03437_consen   80 SVPVGVNVLRNDPKAALAIAAA--TGADFIRVNVFVGAYV--TD--EGIIEGCAGELLRYRKRLGA--DVKILADVHVKH  151 (254)
T ss_pred             CCCEEeeeecCCCHHHHHHHHH--hCCCEEEecCEEceec--cc--CccccccHHHHHHHHHHcCC--CeEEEeeechhh
Confidence            4699999998887655554443  2778888875433221  11  12223333333333333322  2444443332  


Q ss_pred             --CCChHHHHHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          153 --LKSSQDTVELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       153 --g~~~~~~~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                        .....+..+.++.. +..++|+|+|+|....    .+++.+.++++++.+++||+.++|++ ++.+.++++  -|||+
T Consensus       152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG----~~~~~~~l~~vr~~~~~PVlvGSGvt-~~Ni~~~l~--~ADG~  224 (254)
T PF03437_consen  152 SSPLATRDLEEAAKDAVERGGADAVIVTGKATG----EPPDPEKLKRVREAVPVPVLVGSGVT-PENIAEYLS--YADGA  224 (254)
T ss_pred             cccCCCCCHHHHHHHHHHhcCCCEEEECCcccC----CCCCHHHHHHHHhcCCCCEEEecCCC-HHHHHHHHH--hCCEE
Confidence              12223344555444 7789999999988544    46689999999999999999999985 888888884  39999


Q ss_pred             EeccchhcCccc
Q 020428          230 MAARGALWNASI  241 (326)
Q Consensus       230 miGr~~l~~P~l  241 (326)
                      .||+.+-.|-.+
T Consensus       225 IVGS~~K~~G~~  236 (254)
T PF03437_consen  225 IVGSYFKKDGKW  236 (254)
T ss_pred             EEeeeeeeCCEe
Confidence            999975544443

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=98.18  E-value=6.9e-05  Score=65.88  Aligned_cols=136  Identities=21%  Similarity=0.235  Sum_probs=95.5

Q ss_pred             CCCCHHHHHHHHHHhhc--CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHH
Q 020428           83 GTSDAVRALTAAKMVCK--DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT  159 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~--~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~  159 (326)
                      ++.+.++....|+++.+  +-++|-|.. |++          -.|+-|+-...+-.+.+.+. +.-|..-+.      +-
T Consensus        78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~----------~tLlPD~~etl~Aae~Lv~e-GF~VlPY~~------dD  140 (262)
T COG2022          78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDE----------KTLLPDPIETLKAAEQLVKE-GFVVLPYTT------DD  140 (262)
T ss_pred             ccCCHHHHHHHHHHHHHHccCCeEEEEEecCC----------cccCCChHHHHHHHHHHHhC-CCEEeeccC------CC
Confidence            35688999999999887  557776653 222          23666665444444444332 333333232      22


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .-+|++|++.|+..|.=-+-.. +...|..+-..++-|.+..++|||.--||.++.|+...+ +.|||+|++.+++-.
T Consensus       141 ~v~arrLee~GcaavMPl~aPI-GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aM-ElG~DaVL~NTAiA~  216 (262)
T COG2022         141 PVLARRLEEAGCAAVMPLGAPI-GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAM-ELGADAVLLNTAIAR  216 (262)
T ss_pred             HHHHHHHHhcCceEeccccccc-cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHH-hcccceeehhhHhhc
Confidence            4579999999999886433321 223466778888889999999999999999999999999 699999999988653

>TIGR02317 prpB methylisocitrate lyase

Probab=98.15  E-value=0.00013  Score=67.40  Aligned_cols=206  Identities=16%  Similarity=0.091  Sum_probs=126.8

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEeCcee-cccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE--
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEII-DHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM--   82 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl--   82 (326)
                      ..+++|  ++-|..-.+++.+.|...++|--.. +..+..      .+.+...+.+.  ...+-+.....+.|+++-+  
T Consensus        13 ~~l~~p--~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~------pD~g~lt~~e~--~~~~~~I~~~~~iPviaD~d~   82 (285)
T TIGR02317        13 DILQIP--GAINAMAALLAERAGFEAIYLSGAAVAASLGL------PDLGITTLDEV--AEDARRITRVTDLPLLVDADT   82 (285)
T ss_pred             CcEEeC--CCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCC------CCCCCCCHHHH--HHHHHHHHhccCCCEEEECCC
Confidence            456666  7778888889999999777653222 212211      22222111100  0001122233456999988  


Q ss_pred             -CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC----CC
Q 020428           83 -GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL----KS  155 (326)
Q Consensus        83 -~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g----~~  155 (326)
                       +|+ +....+.++.+.+ |+.+|.|.=... ++.+....|..+ -.++...+-+++++++. +.++.+--|..    ..
T Consensus        83 GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~-pK~cgh~~g~~l-v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g  159 (285)
T TIGR02317        83 GFGE-AFNVARTVREMEDAGAAAVHIEDQVL-PKRCGHLPGKEL-VSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEG  159 (285)
T ss_pred             CCCC-HHHHHHHHHHHHHcCCeEEEEecCCC-ccccCCCCCccc-cCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccC
Confidence             355 8999899988877 999999865431 222222223333 35555555566666554 55677666652    34


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe---CCCCCHHHHHHHHHhcCCcEEEec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN---GDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n---GgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+++++-++.+.++|+|.|-+++-         .+.+.++++.+.++.|+..|   ||-.-.-++.++. +.|+..|..|
T Consensus       160 ~deAI~Ra~ay~~AGAD~vfi~g~---------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~-~lGv~~v~~~  229 (285)
T TIGR02317       160 LDAAIERAKAYVEAGADMIFPEAL---------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELR-EAGYKMVIYP  229 (285)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHH-HcCCcEEEEc
Confidence            678999999999999999999863         25678899999999998433   3321112344455 6899999988


Q ss_pred             cc
Q 020428          233 RG  234 (326)
Q Consensus       233 r~  234 (326)
                      ..
T Consensus       230 ~~  231 (285)
T TIGR02317       230 VT  231 (285)
T ss_pred             hH
Confidence            54

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=98.15  E-value=1.5e-05  Score=70.72  Aligned_cols=83  Identities=13%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHH-cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          158 DTVELARRIEK-TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       158 ~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +....+....+ .|...+-+-..   ..+..+.+.+.++++++.+ ++|++..|||+|.+++++++ ..|||+|++|+.+
T Consensus       136 ~~aa~~~lA~~~~g~~~vYlE~g---s~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs~~  211 (223)
T TIGR01768       136 DLAAYAAMAEEMLGMPIIYLEAG---SGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA-EAGADTIVTGNVI  211 (223)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEec---CCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH-HcCCCEEEECcHH
Confidence            33333444444 57766655432   2345667899999999998 99999999999999999999 6899999999999


Q ss_pred             hcCcccccc
Q 020428          236 LWNASIFSS  244 (326)
Q Consensus       236 l~~P~lf~~  244 (326)
                      ..||.++.+
T Consensus       212 ~~dp~~~~~  220 (223)
T TIGR01768       212 EEDVDKALE  220 (223)
T ss_pred             hhCHHHHHH
Confidence            999877654

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=98.15  E-value=5.4e-05  Score=68.57  Aligned_cols=120  Identities=9%  Similarity=0.065  Sum_probs=85.4

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCC-CChH-HHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLL-KSSQ-DTVELAR  164 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g-~~~~-~~~e~a~  164 (326)
                      ...++...+..|+|.||+=+          .+|..+-.+.+.+.+-+.++++.++  .|+-|=+-.+ .+.+ .....++
T Consensus        85 K~~Ea~~Ai~~GAdEiD~Vi----------nig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~  154 (257)
T PRK05283         85 ALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE  154 (257)
T ss_pred             HHHHHHHHHHcCCCEEeeec----------cHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence            55666666667999999843          3555566688888888999988764  3444434333 3444 4778899


Q ss_pred             HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHH
Q 020428          165 RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-------SIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-------~iPVi~nGgI~s~~d~~~~l~  222 (326)
                      .+.++|+|+|-    |..+...+++..+.++.+++.+       ++-|=++|||+|.+++..+++
T Consensus       155 ~a~~aGADFVK----TSTGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~  215 (257)
T PRK05283        155 IAIKAGADFIK----TSTGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA  215 (257)
T ss_pred             HHHHhCCCEEE----cCCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH
Confidence            99999999994    3333334556677776666554       477889999999999999995

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=98.09  E-value=2.1e-05  Score=68.00  Aligned_cols=77  Identities=22%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             HHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          161 ELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+..+.+.|+|+|.+......   +....+..++.++++++..++||++.|||. .+++.+++ ..|+++|++|++++.
T Consensus       106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~-~~Ga~~i~~g~~i~~  183 (196)
T cd00564         106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVL-AAGADGVAVISAITG  183 (196)
T ss_pred             HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCCEEEEehHhhc
Confidence            4456677789999998755322   122246678999999888899999999995 79999999 699999999999876


Q ss_pred             Cc
Q 020428          238 NA  239 (326)
Q Consensus       238 ~P  239 (326)
                      ++
T Consensus       184 ~~  185 (196)
T cd00564         184 AD  185 (196)
T ss_pred             CC
Confidence            43

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=98.08  E-value=0.00032  Score=64.91  Aligned_cols=211  Identities=15%  Similarity=0.083  Sum_probs=124.9

Q ss_pred             ceEEccccCCCCHHHHHHHHHc---------CCCeEEeCc-eecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQY---------GADITYGEE-IIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~---------G~~l~~te~-i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      +.+++|  ++-|..-.+++.+.         |.+.++|-- -.+..+..      .+.+...+.+.  ...+-...+...
T Consensus         9 ~~l~~p--~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~------pD~~~~~~~e~--~~~~~~I~~a~~   78 (285)
T TIGR02320         9 PLERLM--EAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGV------PDIEEASWTQR--LDVVEFMFDVTT   78 (285)
T ss_pred             CCEEEe--cCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCC------CCcCcCCHHHH--HHHHHHHHhhcC
Confidence            355655  77788888889999         997777532 11211111      22222211110  000112233445


Q ss_pred             CcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc--ccccccccCChHHHHHHHHHHhhc-ccCcEEEEe
Q 020428           76 NHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS--GGMGAALLSKPELIHDILTMLKRN-LDVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~--~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~  150 (326)
                      .|+++-+ .|.++..+.+.++.+.+ |+.+|.|.=.+ .++.+.  ++.|...+-.++...+-+++++++ .+.++.+--
T Consensus        79 ~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~-~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA  157 (285)
T TIGR02320        79 KPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKL-GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA  157 (285)
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccC-CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence            6898887 45789999999988876 99999984321 111111  122223344666667777777665 344444444


Q ss_pred             cC-----CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHH
Q 020428          151 RL-----LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       151 r~-----g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~  220 (326)
                      |.     +...+++++-++.+.++|||.|-+++.        +.+.+.+.++.+.+     ++|++.+.+-.-.-.+.++
T Consensus       158 RTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~--------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL  229 (285)
T TIGR02320       158 RVESLILGKGMEDALKRAEAYAEAGADGIMIHSR--------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEF  229 (285)
T ss_pred             ecccccccCCHHHHHHHHHHHHHcCCCEEEecCC--------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHH
Confidence            42     234688999999999999999999831        23456677777665     4688876531111134455


Q ss_pred             HHhcCCcEEEeccchh
Q 020428          221 KTAAGASSVMAARGAL  236 (326)
Q Consensus       221 l~~~Gad~VmiGr~~l  236 (326)
                      - +.|++.|..|..++
T Consensus       230 ~-~lG~~~v~~~~~~~  244 (285)
T TIGR02320       230 R-DAGISVVIYANHLL  244 (285)
T ss_pred             H-HcCCCEEEEhHHHH
Confidence            5 68999998885543

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=98.07  E-value=0.00015  Score=67.01  Aligned_cols=78  Identities=23%  Similarity=0.325  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeC--CCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANG--DVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nG--gI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ..+..+..++.|+|+|.+.-.+.-+.  ...+.+++.++++++.+++|+++-|  ||. .+++.+++ ..|+++|-+.++
T Consensus       155 ~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~~~~i-~~G~~kinv~T~  232 (281)
T PRK06806        155 TTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDFKKCI-QHGIRKINVATA  232 (281)
T ss_pred             HHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEEhHH
Confidence            33434444567999998732222222  2345789999999999999999999  985 78899999 699999999999


Q ss_pred             hhcC
Q 020428          235 ALWN  238 (326)
Q Consensus       235 ~l~~  238 (326)
                      +..+
T Consensus       233 i~~a  236 (281)
T PRK06806        233 TFNS  236 (281)
T ss_pred             HHHH
Confidence            8874

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=98.07  E-value=0.00019  Score=65.11  Aligned_cols=147  Identities=16%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc-----cc-ccc--cCChHHHHHHHHHHhhc-ccCcEEEEecCCC
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG-----MG-AAL--LSKPELIHDILTMLKRN-LDVPVTCKIRLLK  154 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~-----~G-~~l--~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~  154 (326)
                      .+++...++++.+.+ |+|.|||.+  |.+.-..+|     .+ -+|  --.++...++++.+++. .++|+.+=.=  .
T Consensus        28 P~~e~s~e~i~~L~~~GaD~iELGv--PfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y--~  103 (265)
T COG0159          28 PDLETSLEIIKTLVEAGADILELGV--PFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTY--Y  103 (265)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEecC--CCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEe--c
Confidence            477899999998766 899999965  442221111     00 011  12467888999999855 5778765321  1


Q ss_pred             Ch---HHHHHHHHHHHHcCCcEEEE-------------------------eecccC-----------CCC---------C
Q 020428          155 SS---QDTVELARRIEKTGVSALAV-------------------------HGRKVA-----------DRP---------R  186 (326)
Q Consensus       155 ~~---~~~~e~a~~l~~~G~d~i~v-------------------------h~r~~~-----------~~~---------~  186 (326)
                      ++   .-..++.+.+.++|+|++.+                         -.-|..           +++         +
T Consensus       104 Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvT  183 (265)
T COG0159         104 NPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVT  183 (265)
T ss_pred             cHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccccc
Confidence            11   12233455555555555543                         211111           000         1


Q ss_pred             C---c---CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          187 D---P---AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       187 ~---~---~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      |   +   .--+.++++++..++||...=||.+++++.++.+ . ||||.+|+++..
T Consensus       184 G~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~-~-ADGVIVGSAiV~  238 (265)
T COG0159         184 GARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAE-A-ADGVIVGSAIVK  238 (265)
T ss_pred             CCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHH-h-CCeEEEcHHHHH
Confidence            1   1   1246678888888999999999999999999994 6 999999999764

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=98.05  E-value=0.00031  Score=65.06  Aligned_cols=207  Identities=15%  Similarity=0.071  Sum_probs=127.1

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEeC-ceec-ccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYGE-EIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-   82 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te-~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-   82 (326)
                      ..+++|  ++-|..-.+++.+.|...+||- .-.+ ..+..      .+.+...+.+.  ...+-+.......|+++-+ 
T Consensus        17 ~~l~~p--~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~------PD~g~l~~~e~--~~~~~~I~~~~~iPviaD~d   86 (292)
T PRK11320         17 KPLQIV--GTINAYHALLAERAGFKAIYLSGGGVAAASLGL------PDLGITTLDDV--LIDVRRITDACDLPLLVDID   86 (292)
T ss_pred             CcEEec--CCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCC------CCCCCCCHHHH--HHHHHHHHhccCCCEEEECC
Confidence            455655  7778888889999999777643 2212 22211      22222211110  0001122233456999988 


Q ss_pred             --CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC----C
Q 020428           83 --GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL----K  154 (326)
Q Consensus        83 --~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g----~  154 (326)
                        +| ++....+..+.+.+ |+.+|.|-=.. .++.+....|.. +-.++...+=+++++++. +.++.+--|..    .
T Consensus        87 ~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~-~pK~cg~~~~~~-lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~  163 (292)
T PRK11320         87 TGFG-GAFNIARTVKSMIKAGAAAVHIEDQV-GAKRCGHRPNKE-IVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVE  163 (292)
T ss_pred             CCCC-CHHHHHHHHHHHHHcCCeEEEEecCC-CccccCCCCCCc-ccCHHHHHHHHHHHHHhccCCCeEEEEecCccccc
Confidence              35 89999999998877 99999885443 122222222333 345555555566665543 56677766652    3


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE---eCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA---NGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~---nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ..+++++-++.+.++|||.|-+++-         .+.+.++++.+.++.|+.+   ++|-.-.-++.++. +.|+..|..
T Consensus       164 g~deAI~Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~-~lGv~~v~~  233 (292)
T PRK11320        164 GLDAAIERAQAYVEAGADMIFPEAM---------TELEMYRRFADAVKVPILANITEFGATPLFTTEELA-SAGVAMVLY  233 (292)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHH-HcCCcEEEE
Confidence            4678999999999999999999863         2578899999999999844   23322111233444 689999999


Q ss_pred             ccch
Q 020428          232 ARGA  235 (326)
Q Consensus       232 Gr~~  235 (326)
                      |..+
T Consensus       234 ~~~~  237 (292)
T PRK11320        234 PLSA  237 (292)
T ss_pred             ChHH
Confidence            8653

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=98.04  E-value=2.6e-05  Score=70.25  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCC-C------ChHHH
Q 020428           90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLL-K------SSQDT  159 (326)
Q Consensus        90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g-~------~~~~~  159 (326)
                      ..++.+.++.|+|+|++-+          .+|...-.+.+.+.+.+.++++.+   ++|+.+-.-+. .      +++..
T Consensus        79 ~~~ve~A~~~GAd~vd~vi----------~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I  148 (236)
T PF01791_consen   79 VAEVEEAIRLGADEVDVVI----------NYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLI  148 (236)
T ss_dssp             HHHHHHHHHTT-SEEEEEE----------EHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHH
T ss_pred             HHHHHHHHHcCCceeeeec----------cccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHH
Confidence            5555555656999999854          122222223444555555555544   77877763221 0      12236


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc----EEEeCCC------CCHHHHHHHHHhcCC--c
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIP----VIANGDV------FEYDDFQRIKTAAGA--S  227 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP----Vi~nGgI------~s~~d~~~~l~~~Ga--d  227 (326)
                      ...++.+.+.|+|.|-..--. . ......+.+.+.++.+..++|    |.++|||      .+.+++.+++ +.||  -
T Consensus       149 ~~a~ria~e~GaD~vKt~tg~-~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i-~aGa~~~  225 (236)
T PF01791_consen  149 ARAARIAAELGADFVKTSTGK-P-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFI-EAGADRI  225 (236)
T ss_dssp             HHHHHHHHHTT-SEEEEE-SS-S-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHH-HTTHSEE
T ss_pred             HHHHHHHHHhCCCEEEecCCc-c-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHH-HcCChhH
Confidence            777888899999999765331 1 112233556667777777899    9999999      9999999999 6999  9


Q ss_pred             EEEeccchhc
Q 020428          228 SVMAARGALW  237 (326)
Q Consensus       228 ~VmiGr~~l~  237 (326)
                      |++.||.++.
T Consensus       226 G~~~Gr~i~q  235 (236)
T PF01791_consen  226 GTSSGRNIWQ  235 (236)
T ss_dssp             EEEEHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999998753

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=98.02  E-value=0.00013  Score=65.82  Aligned_cols=161  Identities=16%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecc-cccccccccccccCcccccccCCcceeeecccCC-CCcEEEEE---CCCC
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDH-KLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE-RNHVVFQM---GTSD   86 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~vQl---~g~~   86 (326)
                      |.+.-|....+++.+.|++.+++.-.... .+.+      .+.+...+-+.  ....-..+... ..|+++-+   +|.+
T Consensus        16 ~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~------pD~~~vtl~em--~~~~~~I~r~~~~~pviaD~~~G~g~~   87 (240)
T cd06556          16 TLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGY------DDTLPYPVNDV--PYHVRAVRRGAPLALIVADLPFGAYGA   87 (240)
T ss_pred             EecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCC------CCCCCcCHHHH--HHHHHHHHhhCCCCCEEEeCCCCCCcC
Confidence            44778999999999999988876532221 1111      11111110000  00000111122 25889888   3556


Q ss_pred             HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-----------
Q 020428           87 AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-----------  154 (326)
Q Consensus        87 ~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-----------  154 (326)
                      ++...+.++.+.+ |+++|.|--+                   ....+.+++++++ .+||...+..-+           
T Consensus        88 ~~~~~~~~~~l~~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~  147 (240)
T cd06556          88 PTAAFELAKTFMRAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEG  147 (240)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCcee
Confidence            7888888887766 9999998532                   1344556777665 477777665411           


Q ss_pred             ------ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428          155 ------SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD  210 (326)
Q Consensus       155 ------~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg  210 (326)
                            ..++.++-++.++++|+|.|.+.+.          +.+.++++.+.+++|++++|.
T Consensus       148 ~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~----------~~e~~~~i~~~~~~P~~~~ga  199 (240)
T cd06556         148 QYRGDEAGEQLIADALAYAPAGADLIVMECV----------PVELAKQITEALAIPLAGIGA  199 (240)
T ss_pred             eccCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEEec
Confidence                  1346788899999999999999643          578899999999999998874

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK06801 hypothetical protein; Provisional

Probab=98.01  E-value=0.00029  Score=65.20  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCC--cCCHHHHHHHHHhcCCcEEEeCC--CCCHHHHHHHHHhcCCcEEEeccch
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRD--PAKWGEIADIVAALSIPVIANGD--VFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i~~i~~~~~iPVi~nGg--I~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .+..+.+++.|+|+|.+.-.+..+.|.+  +.+++.++++++.+++|++.-||  |. .+++.+++ ..|++.|-+++.+
T Consensus       159 e~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i-~~Gi~KINv~T~~  236 (286)
T PRK06801        159 QLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAI-ELGIHKINFYTGM  236 (286)
T ss_pred             HHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEehhHH
Confidence            3334444589999999966666666654  36999999999999999999998  76 67888998 6999999999985


Q ss_pred             h
Q 020428          236 L  236 (326)
Q Consensus       236 l  236 (326)
                      .
T Consensus       237 ~  237 (286)
T PRK06801        237 S  237 (286)
T ss_pred             H
Confidence            4

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=98.01  E-value=8.7e-05  Score=67.56  Aligned_cols=154  Identities=17%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             EEEEECC--CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHh-hcccCc
Q 020428           78 VVFQMGT--SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLK-RNLDVP  145 (326)
Q Consensus        78 ~~vQl~g--~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~-~~~~~p  145 (326)
                      ++.=|..  .+.+.+.++++.+.+ |+|.|||.+  |.+.-..+|      .--+|-  -+.+.+.++++.++ +..++|
T Consensus        12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGi--PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p   89 (259)
T PF00290_consen   12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGI--PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP   89 (259)
T ss_dssp             EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence            4444433  467899999999887 999999965  332211111      000111  24677888999998 777888


Q ss_pred             EEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeec--------------------------ccC--------------
Q 020428          146 VTCKIRLLKSS---QDTVELARRIEKTGVSALAVHGR--------------------------KVA--------------  182 (326)
Q Consensus       146 v~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r--------------------------~~~--------------  182 (326)
                      +.+=.  .+++   ....++++.+.++|+|++++-+-                          |..              
T Consensus        90 ivlm~--Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFi  167 (259)
T PF00290_consen   90 IVLMT--YYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFI  167 (259)
T ss_dssp             EEEEE---HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEE
T ss_pred             EEEEe--eccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEE
Confidence            76532  1121   12345666666777777665321                          000              


Q ss_pred             -----CCCCCc---C---CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          183 -----DRPRDP---A---KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       183 -----~~~~~~---~---~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           ..-+|.   .   -.+.++++++.+++||+..=||.|++++.++.  .|||||.||++++.
T Consensus       168 Y~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v~  231 (259)
T PF00290_consen  168 YLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFVK  231 (259)
T ss_dssp             EEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred             EeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence                 000111   1   13567888888899999999999999999988  79999999999775

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.00  E-value=0.00011  Score=69.74  Aligned_cols=104  Identities=23%  Similarity=0.304  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC--CCCc----CCHHHHHHHHHhc
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR--PRDP----AKWGEIADIVAAL  201 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~----~~~~~i~~i~~~~  201 (326)
                      ++...+.+..+++.+++|++++++. .+.++..++++.++++|+|+|.+|-......  ..+.    .-++.++.+++.+
T Consensus        86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~  164 (334)
T PRK07565         86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV  164 (334)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence            4566677777777778999999964 5667889999999999999999974321111  1111    1257778898888


Q ss_pred             CCcEEEe--CCCCCHHHHHHHHHhcCCcEEEec
Q 020428          202 SIPVIAN--GDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       202 ~iPVi~n--GgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++||++.  +++.+..++.+.+++.|+|+|.+-
T Consensus       165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~  197 (334)
T PRK07565        165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF  197 (334)
T ss_pred             CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence            9999966  556567778777778999999774

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=97.99  E-value=0.00032  Score=67.48  Aligned_cols=134  Identities=20%  Similarity=0.250  Sum_probs=94.4

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      .++.+.|--.|+..+.  ++.+.+ |+|.+-+|...+                ++.+.+.++++++. ++-+.+-+   .
T Consensus       227 ~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-GikvgVD~---l  284 (391)
T PRK13307        227 AFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP----------------ISTIEKAIHEAQKT-GIYSILDM---L  284 (391)
T ss_pred             CeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEE---c
Confidence            4789999888888775  434444 999999986422                33466677777765 54444422   1


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEee-cccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHG-RKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~-r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+..+.++.+ ..++|.|.+|. ....  . ....|+.++++++. .+++|...|||. .+++..++ ..|+|.+.+|
T Consensus       285 np~tp~e~i~~l-~~~vD~Vllht~vdp~--~-~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~-~aGADivVVG  358 (391)
T PRK13307        285 NVEDPVKLLESL-KVKPDVVELHRGIDEE--G-TEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEAL-KAGADILVVG  358 (391)
T ss_pred             CCCCHHHHHHHh-hCCCCEEEEccccCCC--c-ccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHH-HcCCCEEEEe
Confidence            223455666666 67999999994 3332  1 23357888888874 478999999998 88899998 6999999999


Q ss_pred             cchhc
Q 020428          233 RGALW  237 (326)
Q Consensus       233 r~~l~  237 (326)
                      |++..
T Consensus       359 saIf~  363 (391)
T PRK13307        359 RAITK  363 (391)
T ss_pred             HHHhC
Confidence            99654

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=97.97  E-value=4.5e-05  Score=67.20  Aligned_cols=76  Identities=21%  Similarity=0.247  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCcEEEEeecccCC---CCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          161 ELARRIEKTGVSALAVHGRKVAD---RPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~---~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.+....+.|+|+|.++......   .+..+..++.++++++..+ +||++.||| +.+++.+++ ..|+++|.+|++++
T Consensus       115 ~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~-~~Ga~gv~~gs~i~  192 (212)
T PRK00043        115 EEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVL-EAGADGVAVVSAIT  192 (212)
T ss_pred             HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEEEEeHHhh
Confidence            33566667899999987443322   2222334899999998887 999999999 689999999 69999999999976


Q ss_pred             cC
Q 020428          237 WN  238 (326)
Q Consensus       237 ~~  238 (326)
                      .+
T Consensus       193 ~~  194 (212)
T PRK00043        193 GA  194 (212)
T ss_pred             cC
Confidence            53

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=97.95  E-value=0.0002  Score=70.31  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=73.9

Q ss_pred             HHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428          131 IHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD  210 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg  210 (326)
                      +.++++.+++ .+.++.+-+   .+..+..+.++.+.+.|+|+|.++.....+. .++..++.++++++.+++||++.||
T Consensus        96 ~~~~i~~a~~-~G~~~~~g~---~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~-~~~~~~~~l~~l~~~~~iPI~a~GG  170 (430)
T PRK07028         96 IEDAVRAARK-YGVRLMADL---INVPDPVKRAVELEELGVDYINVHVGIDQQM-LGKDPLELLKEVSEEVSIPIAVAGG  170 (430)
T ss_pred             HHHHHHHHHH-cCCEEEEEe---cCCCCHHHHHHHHHhcCCCEEEEEeccchhh-cCCChHHHHHHHHhhCCCcEEEECC
Confidence            4566777666 366666532   1222345667888889999998874322222 2334578899999888999999999


Q ss_pred             CCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          211 VFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      | +.+.+.+++ ..|||+|.+||+++..+
T Consensus       171 I-~~~n~~~~l-~aGAdgv~vGsaI~~~~  197 (430)
T PRK07028        171 L-DAETAAKAV-AAGADIVIVGGNIIKSA  197 (430)
T ss_pred             C-CHHHHHHHH-HcCCCEEEEChHHcCCC
Confidence            9 688899999 69999999999987654

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=97.95  E-value=0.00021  Score=64.07  Aligned_cols=142  Identities=13%  Similarity=0.179  Sum_probs=95.2

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL  153 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g  153 (326)
                      +.++|.+.|+..+.+..+.+.+ |+|.  +|+==|.=+|+             ..+=.++++++++.. ++|+.+|+-  
T Consensus         9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn-------------~~~G~~~v~~lr~~~~~~~lDvHLm--   73 (228)
T PTZ00170          9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN-------------LSFGPPVVKSLRKHLPNTFLDCHLM--   73 (228)
T ss_pred             EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-------------cCcCHHHHHHHHhcCCCCCEEEEEC--
Confidence            5678889999999999998877 7774  45533322221             112235678888876 899999996  


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCC------------------------------------------------CC
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVAD------------------------------------------------RP  185 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~------------------------------------------------~~  185 (326)
                        ..++...++.+.++|+|.+++|.-....                                                +.
T Consensus        74 --~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~  151 (228)
T PTZ00170         74 --VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGF  151 (228)
T ss_pred             --CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCC
Confidence              2355667788899999999999653210                                                00


Q ss_pred             CCc----CCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          186 RDP----AKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       186 ~~~----~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      .+.    ..++-++++++.. ...|...|||+ .+.+..+. ..|+|.+++||++...
T Consensus       152 ~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~-~aGad~iVvGsaI~~a  207 (228)
T PTZ00170        152 GGQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAA-DAGANVIVAGSSIFKA  207 (228)
T ss_pred             CCcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHH-HcCCCEEEEchHHhCC
Confidence            000    0123344444433 36678899996 67888888 6999999999996543

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=97.95  E-value=0.00069  Score=62.82  Aligned_cols=207  Identities=10%  Similarity=0.053  Sum_probs=123.0

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEe-Cceec-ccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYG-EEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-   82 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~t-e~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-   82 (326)
                      ..+++|  ++-|..-.+++.+.|...+++ ..-.+ ..+..      .+.+...+.+.  ...+-+.......|+++-+ 
T Consensus        16 ~~l~~p--~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~------pD~g~l~~~e~--~~~~~~I~~~~~lPv~aD~d   85 (294)
T TIGR02319        16 EILVVP--SAYDALSAKVIQQAGFPAVHMTGSGTSASMLGL------PDLGFTSVSEQ--AINAKNIVLAVDVPVIMDAD   85 (294)
T ss_pred             CcEEee--cCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCC------CCcCCCCHHHH--HHHHHHHHhccCCCEEEECC
Confidence            355555  777888889999999987774 32222 21221      12222111100  0001222334456999988 


Q ss_pred             --CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC----CC
Q 020428           83 --GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL----LK  154 (326)
Q Consensus        83 --~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~----g~  154 (326)
                        +|+.++ ..+.++.+.+ |+.+|.|.=... ++.+. ..++.-+-.++...+=+++++++. +.++.+--|.    ..
T Consensus        86 tGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~-pK~cg-~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~  162 (294)
T TIGR02319        86 AGYGNAMS-VWRATREFERVGIVGYHLEDQVN-PKRCG-HLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESF  162 (294)
T ss_pred             CCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC-ccccC-CCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccC
Confidence              456666 6677777766 999999964421 22222 222332334444444455555543 4456665565    23


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE---EEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV---IANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV---i~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ..+++++-++.+.++|+|.|-+++-         .+.+.++++.+.++.|+   +..|+-.-.-.+.++. +.|++.|..
T Consensus       163 g~deaI~Ra~aY~eAGAD~ifi~~~---------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~-~lG~~~v~~  232 (294)
T TIGR02319       163 GLDEAIRRSREYVAAGADCIFLEAM---------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELE-SIGYNLAIY  232 (294)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEecCC---------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHH-HcCCcEEEE
Confidence            4678999999999999999999852         35678999999998887   3344332222344555 689999988


Q ss_pred             ccch
Q 020428          232 ARGA  235 (326)
Q Consensus       232 Gr~~  235 (326)
                      |..+
T Consensus       233 ~~~~  236 (294)
T TIGR02319       233 PLSG  236 (294)
T ss_pred             cHHH
Confidence            8543

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=97.95  E-value=7.5e-05  Score=66.83  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=56.9

Q ss_pred             HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCC-cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          168 KTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSI-PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~i-PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      -.|...+.+-...   .+..+.+.+.++++++.+++ ||++.|||+|.+++++++ ..|||+|.+|+++..||.
T Consensus       152 ~~g~~~vYle~gs---~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l-~~GAD~VVVGSai~~d~~  221 (232)
T PRK04169        152 YLGMPIVYLEYGG---GAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELM-AAGADTIVVGNIIEEDPK  221 (232)
T ss_pred             HcCCCeEEEECCC---CCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH-HhCCCEEEEChHHhhCHH
Confidence            3566655554332   23456789999999999998 999999999999999989 589999999999999887

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=97.94  E-value=4.9e-05  Score=82.53  Aligned_cols=108  Identities=18%  Similarity=0.163  Sum_probs=80.4

Q ss_pred             CChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-------cCCHHH-HHH
Q 020428          126 SKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-------PAKWGE-IAD  196 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-------~~~~~~-i~~  196 (326)
                      ..++.+.++|..++... +.||+||+-.+...   -+++.-+.++|+|.|+|.|......-..       ...|+. +.+
T Consensus       978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v---g~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~ 1054 (1485)
T PRK11750        978 YSIEDLAQLIFDLKQVNPKALVSVKLVSEPGV---GTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAE 1054 (1485)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEEccCCCc---cHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHH
Confidence            46778999999999887 68999999754222   2345566789999999998865432211       122544 444


Q ss_pred             HHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          197 IVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       197 i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.+       ++.+++.||+.|+.|+.+++ ..|||.|.+||++|.
T Consensus      1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~-aLGAd~~~~gt~~li 1101 (1485)
T PRK11750       1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAA-ILGAESFGFGTGPMV 1101 (1485)
T ss_pred             HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHH-HcCCcccccchHHHH
Confidence            43332       58999999999999999999 699999999999984

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=97.92  E-value=0.00052  Score=63.48  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=56.6

Q ss_pred             HHHHHHHH-HcCCcEEEEeecccCCCC--CCcCCHHHHHHHHHhcCCcEEEeC--CCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          160 VELARRIE-KTGVSALAVHGRKVADRP--RDPAKWGEIADIVAALSIPVIANG--DVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       160 ~e~a~~l~-~~G~d~i~vh~r~~~~~~--~~~~~~~~i~~i~~~~~iPVi~nG--gI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .+.++.+. +.|+|+|.+.-.+..+.|  .+..+++.+++|++.+++|+++-|  ||. .+++.+++ ..|+++|-+++.
T Consensus       155 ~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~i-~~Gi~kiNv~T~  232 (282)
T TIGR01859       155 PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKAI-KLGIAKINIDTD  232 (282)
T ss_pred             HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHH-HcCCCEEEECcH
Confidence            34444444 589999996433222222  245689999999999999999999  885 67788899 689999999988


Q ss_pred             hh
Q 020428          235 AL  236 (326)
Q Consensus       235 ~l  236 (326)
                      +.
T Consensus       233 l~  234 (282)
T TIGR01859       233 CR  234 (282)
T ss_pred             HH
Confidence            54

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=97.89  E-value=0.00029  Score=62.32  Aligned_cols=150  Identities=17%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEe
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKI  150 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~  150 (326)
                      +-..|+++++.-||+......|..  -|+++|-+|.=|-..-  .+ - +-+.-+...+.+.-..+...+.  ..+-||-
T Consensus        83 ~v~iPvGvNVLrNd~vaA~~IA~a--~gA~FIRVN~~tg~~~--td-q-Giieg~A~e~~r~r~~L~~~v~vlADv~VKH  156 (263)
T COG0434          83 EVSIPVGVNVLRNDAVAALAIAYA--VGADFIRVNVLTGAYA--TD-Q-GIIEGNAAELARYRARLGSRVKVLADVHVKH  156 (263)
T ss_pred             hccccceeeeeccccHHHHHHHHh--cCCCEEEEEeeeceEe--cc-c-ceecchHHHHHHHHHhccCCcEEEeecchhc
Confidence            345799999998887654443332  2788898886443221  01 1 1233333344444444442221  1233344


Q ss_pred             cCCCChHHHHHHHHH-HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          151 RLLKSSQDTVELARR-IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       151 r~g~~~~~~~e~a~~-l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      .......+..+.++- ++..++|+++++|....    .++|.+.++.+++.+++||+++.|+. ++.+..+++ . |||+
T Consensus       157 a~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG----~~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~-~-adG~  229 (263)
T COG0434         157 AVHLGNRSLEEAVKDTVERGLADAVIVTGSRTG----SPPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLK-I-ADGV  229 (263)
T ss_pred             ccccCCcCHHHHHHHHHHccCCCEEEEecccCC----CCCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHH-H-cCce
Confidence            332222344455555 67788999999998544    57799999999999999999998884 888999995 3 9999


Q ss_pred             Eeccch
Q 020428          230 MAARGA  235 (326)
Q Consensus       230 miGr~~  235 (326)
                      .+|+.+
T Consensus       230 IvgT~l  235 (263)
T COG0434         230 IVGTSL  235 (263)
T ss_pred             EEEEEE
Confidence            999863

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=97.88  E-value=0.00048  Score=64.04  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCC---CCcCCHHHHHHHHHhc-CCcEEEeCC--CCCHHHHHHHHHhcCCcEEEe
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRP---RDPAKWGEIADIVAAL-SIPVIANGD--VFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~---~~~~~~~~i~~i~~~~-~iPVi~nGg--I~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +..+.|+.+.+.|+|+|.+.-.+..+.|   ..+.+++.+++|++.+ ++|+++-||  |. .+++.+++ ..|++.|-+
T Consensus       154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i-~~Gi~KiNv  231 (293)
T PRK07315        154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAI-KLGVAKVNV  231 (293)
T ss_pred             CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHH-HcCCCEEEE
Confidence            3455566666899999976422222222   2357999999999999 599999999  85 68899999 699999999


Q ss_pred             ccchhc
Q 020428          232 ARGALW  237 (326)
Q Consensus       232 Gr~~l~  237 (326)
                      ++.+..
T Consensus       232 ~T~i~~  237 (293)
T PRK07315        232 NTECQI  237 (293)
T ss_pred             ccHHHH
Confidence            999775

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.83  E-value=0.00046  Score=61.19  Aligned_cols=143  Identities=20%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----ccc-------ccccccccCChHHHHHH---------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----SVS-------GGMGAALLSKPELIHDI---------  134 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----~~~-------~~~G~~l~~~p~~~~~i---------  134 (326)
                      |++.=|-+.++++....++.+.+ |+..+|+.+-.|..-     .++       ---|+.-..+++.+.+.         
T Consensus        14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv   93 (213)
T PRK06552         14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV   93 (213)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence            56666788999999999999887 899999988766521     000       01233333344444332         


Q ss_pred             --------HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcE
Q 020428          135 --------LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPV  205 (326)
Q Consensus       135 --------v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPV  205 (326)
                              ++..++. ++|+.--+       .+...+..+.++|+|.|-+...       ...-.+.++.++...+ +|+
T Consensus        94 sP~~~~~v~~~~~~~-~i~~iPG~-------~T~~E~~~A~~~Gad~vklFPa-------~~~G~~~ik~l~~~~p~ip~  158 (213)
T PRK06552         94 SPSFNRETAKICNLY-QIPYLPGC-------MTVTEIVTALEAGSEIVKLFPG-------STLGPSFIKAIKGPLPQVNV  158 (213)
T ss_pred             CCCCCHHHHHHHHHc-CCCEECCc-------CCHHHHHHHHHcCCCEEEECCc-------ccCCHHHHHHHhhhCCCCEE
Confidence                    2222211 33332211       1223344556799999998542       1223577888887765 999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.|||+ .+.+.+++ ..|+++|.+|+.++
T Consensus       159 ~atGGI~-~~N~~~~l-~aGa~~vavgs~l~  187 (213)
T PRK06552        159 MVTGGVN-LDNVKDWF-AAGADAVGIGGELN  187 (213)
T ss_pred             EEECCCC-HHHHHHHH-HCCCcEEEEchHHh
Confidence            9999997 89999999 69999999999985

>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4

Probab=97.83  E-value=0.00079  Score=64.67  Aligned_cols=124  Identities=15%  Similarity=0.097  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.++.+.+ ||+.|.|..|-+              ..++.-.+.++++|+.+  ++++.+-..-+|+.+++.++
T Consensus       143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~  208 (368)
T cd03329         143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL  208 (368)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence            78888877776655 999998843211              11456678899999987  46777777778999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEe
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+++.++.++-       + +..+.+++..+++++.+++||.+...+.+ ++++.++++...+|.|++
T Consensus       209 ~~~l~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~  270 (368)
T cd03329         209 GRALEELGFFWYE-------D-PLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA  270 (368)
T ss_pred             HHHhhhcCCCeEe-------C-CCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence            9999999987762       1 22344788889999999999988888999 999999997655788776

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.83  E-value=0.0002  Score=71.50  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEec--c
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAA--R  233 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG--r  233 (326)
                      .+..+-++.|.++|+|.|.+..-.   . ....-|+.+++|++..+ .+| ..|+|.|.++++.++ +.|||+|.+|  +
T Consensus       247 ~~~~~r~~~l~~ag~d~i~iD~~~---g-~~~~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~-~aGaD~i~vg~g~  320 (505)
T PLN02274        247 ESDKERLEHLVKAGVDVVVLDSSQ---G-DSIYQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLI-QAGVDGLRVGMGS  320 (505)
T ss_pred             ccHHHHHHHHHHcCCCEEEEeCCC---C-CcHHHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHH-HcCcCEEEECCCC
Confidence            356788999999999999986521   1 11224789999998764 555 458999999999999 6999999776  5


Q ss_pred             chh
Q 020428          234 GAL  236 (326)
Q Consensus       234 ~~l  236 (326)
                      |..
T Consensus       321 G~~  323 (505)
T PLN02274        321 GSI  323 (505)
T ss_pred             Ccc
Confidence            533

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=97.82  E-value=0.00019  Score=64.64  Aligned_cols=202  Identities=19%  Similarity=0.137  Sum_probs=122.9

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEeC-ceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE--
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYGE-EIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM--   82 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te-~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl--   82 (326)
                      +.+++|  ++-|..-.+++.+.|...++|- .-.+..+..      .+.+...+.+.  ...+-+.+...+.|+++-+  
T Consensus         9 ~~l~~p--~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~------pD~~~lt~~e~--~~~~~~I~~~~~iPv~vD~d~   78 (238)
T PF13714_consen    9 KPLVLP--NVWDALSARLAERAGFDAIATSGAGVAASLGY------PDGGLLTLTEM--LAAVRRIARAVSIPVIVDADT   78 (238)
T ss_dssp             SSEEEE--EESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-------SSS-S-HHHH--HHHHHHHHHHSSSEEEEE-TT
T ss_pred             CcEEeC--CCcCHHHHHHHHHcCCCEEEechHHHHHHcCC------CCCCCCCHHHH--HHHHHHHHhhhcCcEEEEccc
Confidence            566666  6668888899999999777653 222222211      22222221110  0001122233457999998  


Q ss_pred             -CCCCHHHHHHHHHHhhc-CCCEEEEccC-CCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC--C--
Q 020428           83 -GTSDAVRALTAAKMVCK-DVAAIDINMG-CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL--K--  154 (326)
Q Consensus        83 -~g~~~~~~~~aa~~~~~-~~d~idlN~g-cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g--~--  154 (326)
                       +|+++....+.++.+.+ |+.+|.|.=. |.       ..|..++ .++...+=+++++++. +..+.+--|..  .  
T Consensus        79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-------~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~  150 (238)
T PF13714_consen   79 GYGNDPENVARTVRELERAGAAGINIEDQRCG-------HGGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRA  150 (238)
T ss_dssp             TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-------TSTT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHH
T ss_pred             ccCchhHHHHHHHHHHHHcCCcEEEeeccccC-------CCCCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccC
Confidence             47779999999998877 9999999755 32       1334455 5665555566665543 33354544542  2  


Q ss_pred             --ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 --SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 --~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                        ..+++++-++.+.++|+|.|-+++.         .+.+.++++.+.++.|+..+-+ ...-++.++. +.|+..|..|
T Consensus       151 ~~~~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL~-~lGv~~v~~~  219 (238)
T PF13714_consen  151 EEGLDEAIERAKAYAEAGADMIFIPGL---------QSEEEIERIVKAVDGPLNVNPG-PGTLSAEELA-ELGVKRVSYG  219 (238)
T ss_dssp             HHHHHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHHHHHSSEEEEETT-SSSS-HHHHH-HTTESEEEET
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEcC-CCCCCHHHHH-HCCCcEEEEc
Confidence              3467899999999999999999875         2456689999999999887654 2124455566 6899999998


Q ss_pred             cchh
Q 020428          233 RGAL  236 (326)
Q Consensus       233 r~~l  236 (326)
                      -.++
T Consensus       220 ~~~~  223 (238)
T PF13714_consen  220 NSLL  223 (238)
T ss_dssp             SHHH
T ss_pred             HHHH
Confidence            6654

...

>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid

Probab=97.80  E-value=0.00057  Score=65.37  Aligned_cols=133  Identities=14%  Similarity=0.206  Sum_probs=98.9

Q ss_pred             cEEEEECCCCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+-..++..+++++.+.++. .++||..+-+-.|-               .+++.-.+.++++|+.+  ++.+.+-..-+
T Consensus       132 ~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~  196 (355)
T cd03321         132 QAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYNQS  196 (355)
T ss_pred             eEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCCCC
Confidence            44444444566666555544 44588777765431               23455667899999887  35666766667


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+.++++++++.+++.++.+|-       + +..+.|++..+++++.+++||.+...+.++.++.++++...+|.+++-
T Consensus       197 ~~~~~A~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~  267 (355)
T cd03321         197 LTVPEAIERGQALDQEGLTWIE-------E-PTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPD  267 (355)
T ss_pred             cCHHHHHHHHHHHHcCCCCEEE-------C-CCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecC
Confidence            9999999999999999998874       1 223458999999999999999998899999999999976668887664

MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK04302 triosephosphate isomerase; Provisional

Probab=97.78  E-value=0.00042  Score=61.86  Aligned_cols=125  Identities=14%  Similarity=0.120  Sum_probs=77.8

Q ss_pred             HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428           94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS  172 (326)
Q Consensus        94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d  172 (326)
                      ++.+.+ |+++|-+.-.    . ++        ...+.+.+.++..++. ++.+.+-+.   +    .+.++.+.+.|.+
T Consensus        78 ~~~l~~~G~~~vii~~s----e-r~--------~~~~e~~~~v~~a~~~-Gl~~I~~v~---~----~~~~~~~~~~~~~  136 (223)
T PRK04302         78 PEAVKDAGAVGTLINHS----E-RR--------LTLADIEAVVERAKKL-GLESVVCVN---N----PETSAAAAALGPD  136 (223)
T ss_pred             HHHHHHcCCCEEEEecc----c-cc--------cCHHHHHHHHHHHHHC-CCeEEEEcC---C----HHHHHHHhcCCCC
Confidence            455555 8998877431    0 00        1233466777777663 654444332   2    2334456778899


Q ss_pred             EEEEeecccCCCC-----CCcCC-HHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          173 ALAVHGRKVADRP-----RDPAK-WGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       173 ~i~vh~r~~~~~~-----~~~~~-~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      .|-+-++...+..     ..+.. .+.++.+++.. ++||++.|||.+++++..++ ..|+|||.+|++++..+.
T Consensus       137 ~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~-~~gadGvlVGsa~l~~~~  210 (223)
T PRK04302        137 YVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAAL-ELGADGVLLASGVVKAKD  210 (223)
T ss_pred             EEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH-cCCCCEEEEehHHhCCcC
Confidence            8887654221111     01111 22334455533 79999999999999999999 699999999999986554

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.78  E-value=0.00071  Score=58.79  Aligned_cols=144  Identities=19%  Similarity=0.186  Sum_probs=89.9

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----------cccccccccccCChHHHHHHHHH-------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----------SVSGGMGAALLSKPELIHDILTM-------  137 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----------~~~~~~G~~l~~~p~~~~~iv~~-------  137 (326)
                      |++.=+.+.++++..+.++.+.+ |+..|++-+-.|...           ....+.|.-+..  +.+...++.       
T Consensus        13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--d~~~~A~~~gAdgv~~   90 (187)
T PRK07455         13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--EDLEEAIAAGAQFCFT   90 (187)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH--HHHHHHHHcCCCEEEC
Confidence            56655678888888888887776 888999865443311           111222332221  332222111       


Q ss_pred             ---------HhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEE
Q 020428          138 ---------LKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIA  207 (326)
Q Consensus       138 ---------v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~  207 (326)
                               ++...+++..    +|  . .+.+.+....+.|+|+|-+..-      ....-.+.++.++..+ ++|+++
T Consensus        91 p~~~~~~~~~~~~~~~~~i----~G--~-~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~~ipvva  157 (187)
T PRK07455         91 PHVDPELIEAAVAQDIPII----PG--A-LTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLGHIPLIP  157 (187)
T ss_pred             CCCCHHHHHHHHHcCCCEE----cC--c-CCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCCCCcEEE
Confidence                     1111122211    23  1 2334456666799999998331      1122468899999888 699999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .||| |++++..++ ..|+++|.++++++.
T Consensus       158 iGGI-~~~n~~~~l-~aGa~~vav~s~i~~  185 (187)
T PRK07455        158 TGGV-TLENAQAFI-QAGAIAVGLSGQLFP  185 (187)
T ss_pred             eCCC-CHHHHHHHH-HCCCeEEEEehhccc
Confidence            9999 689999999 599999999998754

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=97.77  E-value=0.00017  Score=62.81  Aligned_cols=74  Identities=22%  Similarity=0.297  Sum_probs=56.5

Q ss_pred             HHHHHHcCCcEEEEeecccCC---CCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          163 ARRIEKTGVSALAVHGRKVAD---RPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~---~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +..+.+.|+|++.+...-...   ....+..++.++++++.. ++||++.||| +.+++.+++ .+|+++|++|++++..
T Consensus       109 ~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~-~~G~~gva~~~~i~~~  186 (196)
T TIGR00693       109 LAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL-AAGADGVAVVSAIMQA  186 (196)
T ss_pred             HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEEEEhHHhhCC
Confidence            345777899999875442221   122344789999988765 5999999999 589999999 6999999999998853

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.77  E-value=0.00099  Score=61.42  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecC--CCC---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-CCHHH
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRL--LKS---------SQDTVELARRIEKTGVSALAVHGRKVADRPRDP-AKWGE  193 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-~~~~~  193 (326)
                      .|-+..+++++.... .+++|-.-+..  |.+         ..++.+..+.+++.|+|.+.+.-.|..+.|.+| .|++.
T Consensus       112 eNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~  190 (283)
T PRK07998        112 ENIAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPL  190 (283)
T ss_pred             HHHHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHH
Confidence            455566666666654 37776554433  111         124566677778899999987766666666543 47899


Q ss_pred             HHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccchh
Q 020428          194 IADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       194 i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +++|++.+++|++.-||=..+ +++++++ ..|+..|=++|.+.
T Consensus       191 l~~I~~~~~vPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~Tel~  233 (283)
T PRK07998        191 LKRIAEVSPVPLVIHGGSGIPPEILRSFV-NYKVAKVNIASDLR  233 (283)
T ss_pred             HHHHHhhCCCCEEEeCCCCCCHHHHHHHH-HcCCcEEEECHHHH
Confidence            999999999999988876665 6777788 69999999998753

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=97.71  E-value=0.0014  Score=57.91  Aligned_cols=56  Identities=14%  Similarity=0.240  Sum_probs=46.4

Q ss_pred             CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          185 PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       185 ~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +..|...+.++++++..  |+|+.|||+|+|++.++. ..|||.+++|..+..+|.-+.
T Consensus       176 a~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a-~agAD~IVtG~iiee~~~~~~  231 (240)
T COG1646         176 AGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMA-EAGADTIVTGTIIEEDPDKAL  231 (240)
T ss_pred             CCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHH-HcCCCEEEECceeecCHHHHH
Confidence            34567778887777654  999999999999999999 689999999999988884433

>PRK08185 hypothetical protein; Provisional

Probab=97.70  E-value=0.0022  Score=59.23  Aligned_cols=76  Identities=18%  Similarity=0.293  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHcCCcEEEE-----eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEec
Q 020428          159 TVELARRIEKTGVSALAV-----HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~v-----h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiG  232 (326)
                      +.+..+..++.|+|++.+     ||...... ....+++.+++|++.+++|++.-||+..+ +++++++ ..|+.-|=++
T Consensus       151 peea~~f~~~TgvD~LAvaiGt~HG~y~~~~-kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai-~~GI~KiNi~  228 (283)
T PRK08185        151 PEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK-KPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESV-QLGVGKINIS  228 (283)
T ss_pred             HHHHHHHHHhhCCCEEEeccCcccCCcCCCC-CCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHH-HCCCeEEEeC
Confidence            344445555669999999     66544321 23457999999999999999999999665 5677777 6899999888


Q ss_pred             cchh
Q 020428          233 RGAL  236 (326)
Q Consensus       233 r~~l  236 (326)
                      +.+.
T Consensus       229 T~l~  232 (283)
T PRK08185        229 SDMK  232 (283)
T ss_pred             hHHH
Confidence            7643

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=97.68  E-value=0.00018  Score=63.46  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ..+.+..+++.|+|+|.+-..-....  ...+.-++.+..+++...+|+++-|||. ++.+.+++ .+|++||.+-|+++
T Consensus       113 ~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~-~~Ga~gVAvvsai~  190 (211)
T COG0352         113 DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVL-EAGADGVAVVSAIT  190 (211)
T ss_pred             CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHH-HhCCCeEEehhHhh
Confidence            45678888899999998754422211  1156679999999998899999999995 88899999 69999999999988


Q ss_pred             cCccc
Q 020428          237 WNASI  241 (326)
Q Consensus       237 ~~P~l  241 (326)
                      .++..
T Consensus       191 ~a~d~  195 (211)
T COG0352         191 SAADP  195 (211)
T ss_pred             cCCCH
Confidence            75543

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.0023  Score=58.53  Aligned_cols=202  Identities=17%  Similarity=0.131  Sum_probs=122.4

Q ss_pred             eEEccccCCCCHHHHHHHHHcCCCeEE-eCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE---
Q 020428            7 LVLAPMVRVGTLPFRLLAAQYGADITY-GEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM---   82 (326)
Q Consensus         7 iilAPM~g~t~~~fr~~~~~~G~~l~~-te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl---   82 (326)
                      +++.|  +.=|..-..++.+.|...+| |....+..+..      .+.+...+.+  .-...-+.....+-|+.+-+   
T Consensus        19 ~~~~p--g~~d~~sA~la~~aGF~al~~sg~~vA~slG~------pD~~~~t~~e--~~~~vrrI~~a~~lPv~vD~dtG   88 (289)
T COG2513          19 PLVLP--GAWDAGSALLAERAGFKALYLSGAGVAASLGL------PDLGITTLDE--VLADARRITDAVDLPVLVDIDTG   88 (289)
T ss_pred             CEEec--CCcCHHHHHHHHHcCCeEEEeccHHHHHhcCC------CccccccHHH--HHHHHHHHHhhcCCceEEeccCC
Confidence            44444  66678888899999985555 44333333322      2222111100  00001223344567999998   


Q ss_pred             CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC---C-Ch
Q 020428           83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL---K-SS  156 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g---~-~~  156 (326)
                      +|+ +....+.++.+.+ |+.+|.|-=- -.++.+..--|..+. +++...+-|++++++. +.++.+--|..   . -.
T Consensus        89 fG~-~~nvartV~~~~~aG~agi~iEDq-~~pk~cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~l  165 (289)
T COG2513          89 FGE-ALNVARTVRELEQAGAAGIHIEDQ-VGPKRCGHLPGKELV-SIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGL  165 (289)
T ss_pred             CCc-HHHHHHHHHHHHHcCcceeeeeec-ccchhcCCCCCCCcC-CHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccH
Confidence            566 8888888888876 8888777411 001111111233343 4555555556665554 56677766651   1 25


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe----CC--CCCHHHHHHHHHhcCCcEEE
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN----GD--VFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n----Gg--I~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +++++-++.+.++|+|.|-.++.+         +.+.++++++.+++|+.+|    |+  ..|.+   ++- ..|++.|.
T Consensus       166 d~AI~Ra~AY~eAGAD~if~~al~---------~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~---~L~-~~Gv~~V~  232 (289)
T COG2513         166 DDAIERAQAYVEAGADAIFPEALT---------DLEEIRAFAEAVPVPLPANITEFGKTPLLTVA---ELA-ELGVKRVS  232 (289)
T ss_pred             HHHHHHHHHHHHcCCcEEccccCC---------CHHHHHHHHHhcCCCeeeEeeccCCCCCcCHH---HHH-hcCceEEE
Confidence            789999999999999999887763         4788999999999776555    33  34443   344 68999998


Q ss_pred             eccc
Q 020428          231 AARG  234 (326)
Q Consensus       231 iGr~  234 (326)
                      .|-.
T Consensus       233 ~~~~  236 (289)
T COG2513         233 YGLT  236 (289)
T ss_pred             ECcH
Confidence            8743

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.66  E-value=0.00029  Score=66.79  Aligned_cols=77  Identities=18%  Similarity=0.158  Sum_probs=60.0

Q ss_pred             HHHHHHHHHcCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          160 VELARRIEKTGVSALAVHGRKVA--DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .+-+..+.+.|+|+|.+...-..  -....+..++.++.+++..++||++-|||. ++++.+++ .+|+++|.++++++.
T Consensus       250 ~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~-~~Ga~gVAvisaI~~  327 (347)
T PRK02615        250 PEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVL-QAGAKRVAVVRAIMG  327 (347)
T ss_pred             HHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCcEEEEeHHHhC
Confidence            34456666789999998644221  111235679999999998999999999995 89999988 699999999999885


Q ss_pred             C
Q 020428          238 N  238 (326)
Q Consensus       238 ~  238 (326)
                      .
T Consensus       328 a  328 (347)
T PRK02615        328 A  328 (347)
T ss_pred             C
Confidence            3

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=97.66  E-value=0.00078  Score=60.77  Aligned_cols=108  Identities=18%  Similarity=0.272  Sum_probs=78.2

Q ss_pred             HHHHHHhhcccCcEEEEecC------------CC----------ChHHHHHHHHHHHHcCCcEEE-Eeeccc--------
Q 020428          133 DILTMLKRNLDVPVTCKIRL------------LK----------SSQDTVELARRIEKTGVSALA-VHGRKV--------  181 (326)
Q Consensus       133 ~iv~~v~~~~~~pv~vK~r~------------g~----------~~~~~~e~a~~l~~~G~d~i~-vh~r~~--------  181 (326)
                      +.++.+++.+++||-+|-=+            |-          +.++..++.....+.|.+.++ ||...-        
T Consensus        97 e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~g  176 (254)
T COG0134          97 EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLG  176 (254)
T ss_pred             HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCC
Confidence            34677788889999888532            11          234577788888888887776 664321        


Q ss_pred             --------CCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          182 --------ADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       182 --------~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                              ....+-..|.+...++....  +..+|.-+||.|++|+.++. ..|+||+.||+++|.++..
T Consensus       177 a~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~-~~ga~a~LVG~slM~~~~~  245 (254)
T COG0134         177 AKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLA-KAGADAFLVGEALMRADDP  245 (254)
T ss_pred             CCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHH-HcCCCEEEecHHHhcCCCH
Confidence                    11111244677777777765  36788999999999999999 6999999999999998875

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.65  E-value=0.00031  Score=62.65  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=58.4

Q ss_pred             HHHHHHcCCcEEEEeecc-cCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          163 ARRIEKTGVSALAVHGRK-VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~-~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +..+.+.|+|+|.+..-. .......|...+.++++++.+++||++-||| +.+++.+++ .+||+||.+-++++..+
T Consensus       124 a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~-~~GA~giAvisai~~~~  199 (221)
T PRK06512        124 AMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVA-ETGAEFVALERAVFDAH  199 (221)
T ss_pred             HHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHH-HhCCCEEEEhHHhhCCC
Confidence            444667999999986542 1111234556788888888899999999999 799999999 69999999999987533

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=97.63  E-value=0.0025  Score=58.96  Aligned_cols=109  Identities=16%  Similarity=0.206  Sum_probs=76.4

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC--CC-C--------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cCCH
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S--------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--PAKW  191 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~--------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~  191 (326)
                      ..|-+..+++++..... +++|-.-+..  |. +        ..++.+..+.+++.|+|.+.+.-.|..+.|.+  ..||
T Consensus       114 eeNi~~Trevv~~Ah~~-gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~  192 (285)
T PRK07709        114 EENVETTKKVVEYAHAR-NVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGF  192 (285)
T ss_pred             HHHHHHHHHHHHHHHHc-CCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCH
Confidence            34555666666666543 6666555433  11 1        12455666667788999999876666666654  4689


Q ss_pred             HHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428          192 GEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       192 ~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.+++|++.+++|++.-||=..+ +++++++ ..|+.-|=|++.+
T Consensus       193 ~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l  236 (285)
T PRK07709        193 AEMEQVRDFTGVPLVLHGGTGIPTADIEKAI-SLGTSKINVNTEN  236 (285)
T ss_pred             HHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEeChHH
Confidence            99999999999999988887665 6777888 6899888888764

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=97.62  E-value=0.001  Score=60.44  Aligned_cols=116  Identities=13%  Similarity=0.264  Sum_probs=81.7

Q ss_pred             cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEee
Q 020428           99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG  178 (326)
Q Consensus        99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~  178 (326)
                      .|+|+|=|..+               +-.++.+.++++...+ .+.-+.|-+.       ..+.++.+.++|++.|-|..
T Consensus       130 ~GADaVLLI~~---------------~L~~~~l~~l~~~a~~-lGle~lVEVh-------~~~El~~al~~~a~iiGINn  186 (254)
T PF00218_consen  130 AGADAVLLIAA---------------ILSDDQLEELLELAHS-LGLEALVEVH-------NEEELERALEAGADIIGINN  186 (254)
T ss_dssp             TT-SEEEEEGG---------------GSGHHHHHHHHHHHHH-TT-EEEEEES-------SHHHHHHHHHTT-SEEEEES
T ss_pred             cCCCEeehhHH---------------hCCHHHHHHHHHHHHH-cCCCeEEEEC-------CHHHHHHHHHcCCCEEEEeC
Confidence            37888877642               2245667777777765 4776677664       22335555688999999999


Q ss_pred             cccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          179 RKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       179 r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      |.-..   -..|++...++...+  ++.+|+-+||.|++|+..+. ..|+|+|.||++++..|..
T Consensus       187 RdL~t---f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~-~~G~davLVGe~lm~~~d~  247 (254)
T PF00218_consen  187 RDLKT---FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLA-RAGADAVLVGEALMRSPDP  247 (254)
T ss_dssp             BCTTT---CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHC-TTT-SEEEESHHHHTSSSH
T ss_pred             ccccC---cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHH-HCCCCEEEECHHHhCCCCH
Confidence            86553   345667777777665  47799999999999999998 7999999999999997764

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=97.59  E-value=0.0028  Score=58.55  Aligned_cols=110  Identities=17%  Similarity=0.204  Sum_probs=75.9

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-C--------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cCC
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S--------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--PAK  190 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~--------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~  190 (326)
                      +..|-+...++++.... .+++|-.-+..  |. +        ..++.+..+.+++.|+|.+.+.-.|..+.|.+  ..|
T Consensus       113 ~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld  191 (286)
T PRK08610        113 FEENVATTKKVVEYAHE-KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLG  191 (286)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCC
Confidence            34455566666666553 36665554432  11 1        12455555666789999999876666666654  357


Q ss_pred             HHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428          191 WGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       191 ~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      ++.+++|++.+++|++.-||=..+ +++++++ ..|+.-|=+++.+
T Consensus       192 ~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai-~~GI~KiNi~T~l  236 (286)
T PRK08610        192 FKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAI-PFGTAKINVNTEN  236 (286)
T ss_pred             HHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH-HCCCeEEEeccHH
Confidence            899999999999999988887666 6677788 6898888888764

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.0022  Score=56.53  Aligned_cols=145  Identities=15%  Similarity=0.228  Sum_probs=99.4

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      ++..+|...|...+.+-.+.+.+ |+|.+  |+==|.=+             .|.-+=-.+++++++.+..|+.|-+=. 
T Consensus         5 ~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFV-------------PNiTfGp~~v~~l~~~t~~p~DvHLMV-   70 (220)
T COG0036           5 KIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFV-------------PNITFGPPVVKALRKITDLPLDVHLMV-   70 (220)
T ss_pred             eeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcC-------------CCcccCHHHHHHHhhcCCCceEEEEec-
Confidence            57889999999999998888876 88865  44223212             222333467888988888999987753 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-  187 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-  187 (326)
                         +++..+++.+.++|+|.|++|.-...                                             .++.| 
T Consensus        71 ---~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ  147 (220)
T COG0036          71 ---ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQ  147 (220)
T ss_pred             ---CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCccc
Confidence               35577889999999999999854110                                             11112 


Q ss_pred             ---cCCHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          188 ---PAKWGEIADIVAALS----IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       188 ---~~~~~~i~~i~~~~~----iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                         +.-.+-++++++..+    +-|-.-|||+ .+.+..+. ..|||.+++|+++..+++
T Consensus       148 ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~-~AGad~~VaGSalF~~~d  205 (220)
T COG0036         148 KFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLA-AAGADVFVAGSALFGADD  205 (220)
T ss_pred             ccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHH-HcCCCEEEEEEEEeCCcc
Confidence               122344455554432    3466889996 67777777 699999999998776665

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=97.58  E-value=0.0056  Score=56.81  Aligned_cols=205  Identities=16%  Similarity=0.108  Sum_probs=120.7

Q ss_pred             CceEEccccCCCCHHHHHHHHHcCCCeEEeCcee-cccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-
Q 020428            5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEII-DHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-   82 (326)
Q Consensus         5 ~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-   82 (326)
                      +.++++|  |+-|.--.+++.+.|...++|--.. +..+..      .+.+...+.+.  ...+-+.......|+++-+ 
T Consensus        14 ~~~~~~p--g~~D~lSAri~e~aGf~ai~~ss~~va~slG~------pD~g~l~~~e~--~~~~~~I~~~~~lPv~aD~d   83 (290)
T TIGR02321        14 GRLFTAM--AAHNPLVAKLAEQAGFGGIWGSGFELSASYAV------PDANILSMSTH--LEMMRAIASTVSIPLIADID   83 (290)
T ss_pred             CCCEEec--cccCHHHHHHHHHcCCCEEEECHHHHHHHCCC------CCcccCCHHHH--HHHHHHHHhccCCCEEEECC
Confidence            4577777  7778888889999999877754221 111211      22222211110  0001122233456999988 


Q ss_pred             --CCCCHHHHHHHHHHhhc-CCCEEEEccCC-Ccccccccc-ccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC---
Q 020428           83 --GTSDAVRALTAAKMVCK-DVAAIDINMGC-PKSFSVSGG-MGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL---  153 (326)
Q Consensus        83 --~g~~~~~~~~aa~~~~~-~~d~idlN~gc-P~~~~~~~~-~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g---  153 (326)
                        +|+.+ ...+.++.+.+ |+.+|.|.=+. |..  +... .|..-+-+++...+-+++++++- +.++.+--|..   
T Consensus        84 ~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~--cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~  160 (290)
T TIGR02321        84 TGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKD--TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALI  160 (290)
T ss_pred             CCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcc--cccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence              46666 57787887776 99999996542 221  1100 12122345555555566665543 55676666652   


Q ss_pred             --CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEEEeC---CCCCHHHHHHHHHhcC-
Q 020428          154 --KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVIANG---DVFEYDDFQRIKTAAG-  225 (326)
Q Consensus       154 --~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi~nG---gI~s~~d~~~~l~~~G-  225 (326)
                        ...+++++-++.+.++|+|.|-+++..        .+.+.+.++.+.++  +||..+.   ...+.++   +. +.| 
T Consensus       161 ~~~g~deAI~Ra~aY~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~---l~-~lg~  228 (290)
T TIGR02321       161 AGLGQQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEAD---IA-ALSK  228 (290)
T ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHH---HH-HhcC
Confidence              245789999999999999999998631        24677888888876  5886543   3334444   33 455 


Q ss_pred             CcEEEeccc
Q 020428          226 ASSVMAARG  234 (326)
Q Consensus       226 ad~VmiGr~  234 (326)
                      +..|..|..
T Consensus       229 ~~~v~~g~~  237 (290)
T TIGR02321       229 VGIVIYGNH  237 (290)
T ss_pred             CcEEEEChH
Confidence            566666643

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=97.58  E-value=0.0012  Score=60.08  Aligned_cols=98  Identities=18%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             cccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428          117 SGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       117 ~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                      +...|-+-++.|+.+    +++++.+++||.-+++.+.     ...++.+.++|+|.|..+.|.+      | ..+.+..
T Consensus        43 ~~~~~v~R~~~~~~I----~~Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDiIDaT~r~r------P-~~~~~~~  106 (283)
T cd04727          43 RAAGGVARMADPKMI----KEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEVLT------P-ADEEHHI  106 (283)
T ss_pred             hhcCCeeecCCHHHH----HHHHHhCCCCeEEeeehhH-----HHHHHHHHHcCCCEEeccCCCC------c-HHHHHHH
Confidence            455677788888775    5556667999999998654     6779999999999996444422      2 4678888


Q ss_pred             HHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          197 IVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       197 i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +++..++|++  .|+.|.+++.+.. +.|+|.  ||+-+
T Consensus       107 iK~~~~~l~M--AD~stleEal~a~-~~Gad~--I~TTl  140 (283)
T cd04727         107 DKHKFKVPFV--CGARNLGEALRRI-SEGAAM--IRTKG  140 (283)
T ss_pred             HHHHcCCcEE--ccCCCHHHHHHHH-HCCCCE--EEecC
Confidence            8887777775  5899999999999 689985  45554

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=97.56  E-value=0.00026  Score=61.02  Aligned_cols=72  Identities=24%  Similarity=0.300  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          161 ELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.++.+.+.|+|++.+..--..   ..+ .+..|+.+.++++..++||++-||| +++++..+. .+|++||.+-|++
T Consensus       106 ~e~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~-~~Ga~gvAvi~aI  180 (180)
T PF02581_consen  106 EEAREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARASPIPVYALGGI-TPENIPELR-EAGADGVAVISAI  180 (180)
T ss_dssp             HHHHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHH-HTT-SEEEESHHH
T ss_pred             HHHHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEeeC
Confidence            3378888999999998765221   122 5667999999999999999999999 688899988 6999999998864

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00031  Score=65.03  Aligned_cols=94  Identities=23%  Similarity=0.372  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ...|+.+.+++.|+..|.+.....++... ..|.++++.++..++||||++.|-.++++.+++++++.||+...+ |   
T Consensus       442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~-GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaA-G---  516 (541)
T KOG0623|consen  442 GVFELTRACEALGAGEILLNCIDCDGSNK-GYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAA-G---  516 (541)
T ss_pred             chhhHHHHHHHhCcchheeeeeccCCCCC-CcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhc-c---
Confidence            57899999999999999999888776543 458999999999999999999999999999999999999875332 3   


Q ss_pred             CcccccccCCCCHHHHHHHHHHHH
Q 020428          238 NASIFSSQGKLHWEDVKREYVRKS  261 (326)
Q Consensus       238 ~P~lf~~~~~~~~~~~~~~~~~~~  261 (326)
                         +|.+. +.+..++ ++||+.+
T Consensus       517 ---iFHR~-e~~i~dV-KEyL~eh  535 (541)
T KOG0623|consen  517 ---IFHRK-EVPIQDV-KEYLQEH  535 (541)
T ss_pred             ---ceecC-ccchHHH-HHHHHhh
Confidence               56652 3333333 4777655

>PRK08005 epimerase; Validated

Probab=97.55  E-value=0.0043  Score=54.80  Aligned_cols=142  Identities=12%  Similarity=0.158  Sum_probs=93.1

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +..+|.+.|+..+.+..+.+.+ |+|.  +|+==|.=+|             +..+--++++++++.++.|+.|=+=.  
T Consensus         3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVP-------------N~tfG~~~i~~l~~~t~~~~DvHLMv--   67 (210)
T PRK08005          3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFIN-------------NITFGMKTIQAVAQQTRHPLSFHLMV--   67 (210)
T ss_pred             EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCC-------------ccccCHHHHHHHHhcCCCCeEEEecc--
Confidence            4568888999999888888877 7775  4553232222             22233456788887778887776642  


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCCc-
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRDP-  188 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~~-  188 (326)
                        .++..+++.+.++|+|.|++|.-...                                             .++.|. 
T Consensus        68 --~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~  145 (210)
T PRK08005         68 --SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQ  145 (210)
T ss_pred             --CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccce
Confidence              24566788888999999999854211                                             011111 


Q ss_pred             ---CCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          189 ---AKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       189 ---~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                         .-++-++++++.. ...|-+-|||+ .+.+..+. +.|||.+++|+++..+
T Consensus       146 f~~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~-~aGad~~V~GsaiF~~  197 (210)
T PRK08005        146 FIAAMCEKVSQSREHFPAAECWADGGIT-LRAARLLA-AAGAQHLVIGRALFTT  197 (210)
T ss_pred             ecHHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhCC
Confidence               1123344444432 24688999997 78888888 6999999999986543

>PRK06852 aldolase; Validated

Probab=97.55  E-value=0.0072  Score=56.22  Aligned_cols=94  Identities=16%  Similarity=0.059  Sum_probs=62.5

Q ss_pred             ccCcEEEEe-cCC------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCC-
Q 020428          142 LDVPVTCKI-RLL------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVF-  212 (326)
Q Consensus       142 ~~~pv~vK~-r~g------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~-  212 (326)
                      .++|+.+=+ ..|      .+++.....++...+.|+|.|-+-.-+..    +..+.+.++++.+.+ .+||+..||=. 
T Consensus       166 ~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~----~~g~~e~f~~vv~~~g~vpVviaGG~k~  241 (304)
T PRK06852        166 HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKE----GANPAELFKEAVLAAGRTKVVCAGGSST  241 (304)
T ss_pred             hCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcC----CCCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence            489987511 112      23345666678889999999977432211    113567888888888 89988888866 


Q ss_pred             CHHHHHHH----HHhcCCcEEEeccchhcCc
Q 020428          213 EYDDFQRI----KTAAGASSVMAARGALWNA  239 (326)
Q Consensus       213 s~~d~~~~----l~~~Gad~VmiGr~~l~~P  239 (326)
                      +.+++.++    ++..|+.||.+||=++..|
T Consensus       242 ~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~  272 (304)
T PRK06852        242 DPEEFLKQLYEQIHISGASGNATGRNIHQKP  272 (304)
T ss_pred             CHHHHHHHHHHHHHHcCCceeeechhhhcCC
Confidence            44445444    4338999999999765543

>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway

Probab=97.54  E-value=0.0034  Score=59.98  Aligned_cols=141  Identities=16%  Similarity=0.210  Sum_probs=101.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+-..+++.+++++.+.++.. ..||..+-+..|-+.++..       .-.+++.-.+.++++++.+  ++.+.+-..-+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~-------~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~  186 (352)
T cd03325         114 RVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWID-------TSKKVDAAVERVAALREAVGPDIDIGVDFHGR  186 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccCC-------CHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence            444445556788776555544 4499999997763321100       0023556677888998887  45677766667


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+.+++.++++.+++.|+.+|-       | +..+.|++..+++++.+++||.+.=.+.+++++..+++...+|.+++-
T Consensus       187 ~~~~~A~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d  257 (352)
T cd03325         187 VSKPMAKDLAKELEPYRLLFIE-------E-PVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPD  257 (352)
T ss_pred             CCHHHHHHHHHhccccCCcEEE-------C-CCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecC
Confidence            9999999999999999988872       2 223457899999999999999887788999999999976667877664

D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00054  Score=67.00  Aligned_cols=107  Identities=20%  Similarity=0.260  Sum_probs=77.2

Q ss_pred             ChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-------cCCHHH-HHHH
Q 020428          127 KPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-------PAKWGE-IADI  197 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-------~~~~~~-i~~i  197 (326)
                      .++.+.++|..+++.. ..+|+||+-.+.-.+   .++.-..++++|.|+|.|......-+.       ..-|++ +.+.
T Consensus       286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~---~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~  362 (485)
T COG0069         286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVG---TIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAET  362 (485)
T ss_pred             CHHHHHHHHHHHHhcCCCCeEEEEEecccchH---HHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHH
Confidence            5788999999999886 467999997643221   223337889999999998755432211       112443 3333


Q ss_pred             HHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          198 VAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       198 ~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .+.+       ++-|++.||+.|..|+.+.+ ..|||.|-+||+.|-
T Consensus       363 ~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~-aLGAd~v~~gTa~li  408 (485)
T COG0069         363 HQTLVLNGLRDKVKLIADGGLRTGADVAKAA-ALGADAVGFGTAALV  408 (485)
T ss_pred             HHHHHHcCCcceeEEEecCCccCHHHHHHHH-HhCcchhhhchHHHH
Confidence            3322       57789999999999999999 699999999999884

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=97.53  E-value=0.003  Score=57.79  Aligned_cols=159  Identities=20%  Similarity=0.219  Sum_probs=96.4

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceec-ccccccccccccccCcccccccCCcceeeecccCCCC-cEEEEE-CC---C
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERN-HVVFQM-GT---S   85 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~vQl-~g---~   85 (326)
                      |.+.-|....+++.+.|++.++|..... ..+.+      .+.....+-+.  ....-..+...+. ++++-+ ||   .
T Consensus        19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~------~Dt~~vtl~em--~~h~~~V~r~~~~p~vvaD~pfg~y~~   90 (264)
T PRK00311         19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGY------DSTLPVTLDDM--IYHTKAVARGAPRALVVADMPFGSYQA   90 (264)
T ss_pred             EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCC------CCCCCcCHHHH--HHHHHHHHhcCCCCcEEEeCCCCCccC
Confidence            3467799999999999999998762221 11211      11111100000  0000001112222 466666 23   3


Q ss_pred             CHHH-HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE---------------E
Q 020428           86 DAVR-ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT---------------C  148 (326)
Q Consensus        86 ~~~~-~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~---------------v  148 (326)
                      ++++ ...+.+.+++ |+++|.|--|                   +...+.+++++++ ++||.               .
T Consensus        91 ~~~~av~~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~  150 (264)
T PRK00311         91 SPEQALRNAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGY  150 (264)
T ss_pred             CHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCe
Confidence            5666 4556666764 9999998643                   2455667777655 88885               2


Q ss_pred             EecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          149 KIRLLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       149 K~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                      |+ .|.+.   ++.++-++.++++|++.|.+-+-          .-+.+++|.+.+++|+|+-|
T Consensus       151 ~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----------~~~~~~~i~~~l~iP~igiG  203 (264)
T PRK00311        151 KV-QGRDEEAAEKLLEDAKALEEAGAFALVLECV----------PAELAKEITEALSIPTIGIG  203 (264)
T ss_pred             ee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEec
Confidence            22 23333   46888899999999999988643          22688999999999999765

>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3

Probab=97.52  E-value=0.0029  Score=60.48  Aligned_cols=122  Identities=16%  Similarity=0.251  Sum_probs=92.9

Q ss_pred             CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.++. +..||..+-+-.|                .+++.-.+.++++|+.+  ++.+.+-...+|+..+++++
T Consensus       138 ~~e~~~~~a~~~~~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~  201 (352)
T cd03328         138 DDDRLREQLSGWVAQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL  201 (352)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence            56666555544 4459998888543                13466677889999887  45677777767999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+++.++.++       +| +..+-|++..+++++.  +++||.+.=.+.|..++.++++...+|.|++
T Consensus       202 ~~~l~~~~~~~~-------Ee-P~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~  264 (352)
T cd03328         202 ARAFADEGVTWF-------EE-PVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA  264 (352)
T ss_pred             HHHHHHhCcchh-------hC-CCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence            999999988765       22 2344578999999999  8899998888999999999996555777754

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=97.50  E-value=0.00052  Score=60.92  Aligned_cols=77  Identities=26%  Similarity=0.329  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      ..+..++|+.++++|+++|++......-    ....+.++.+++.+++||+.-|+|.+.++++.++ +.|||+|.++...
T Consensus        30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~----~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~-~~Gad~v~l~~~~  104 (217)
T cd00331          30 DFDPVEIAKAYEKAGAAAISVLTEPKYF----QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEAR-AAGADAVLLIVAA  104 (217)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCcccc----CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHH-HcCCCEEEEeecc
Confidence            4578999999999999999887553221    1246788888888899999999999999999999 6999999998776


Q ss_pred             hc
Q 020428          236 LW  237 (326)
Q Consensus       236 l~  237 (326)
                      +.
T Consensus       105 ~~  106 (217)
T cd00331         105 LD  106 (217)
T ss_pred             CC
Confidence            54

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=97.49  E-value=0.0045  Score=55.23  Aligned_cols=141  Identities=15%  Similarity=0.180  Sum_probs=94.9

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLL  153 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g  153 (326)
                      +..+|.+.|...+.+-.+.+.+ |+|.  +|+==|.=+|+             ..+--++++++++. ++.|+.|=+=. 
T Consensus         6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN-------------~tfg~~~i~~lr~~~~~~~~dvHLMv-   71 (223)
T PRK08745          6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN-------------LTIGPMVCQALRKHGITAPIDVHLMV-   71 (223)
T ss_pred             EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-------------cccCHHHHHHHHhhCCCCCEEEEecc-
Confidence            6678899999999998988877 7775  45533432222             22234568888887 58888877643 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-  187 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-  187 (326)
                         .++..+++.+.++|+|.|++|.-...                                             .++.| 
T Consensus        72 ---~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ  148 (223)
T PRK08745         72 ---EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ  148 (223)
T ss_pred             ---CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence               24566788888899999999854210                                             01111 


Q ss_pred             ---cCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 ---PAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 ---~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                         +..++-++++++.     .++.|-.-|||+ .+.+..+. ..|||.+++||++..
T Consensus       149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~-~aGaDi~V~GSaiF~  204 (223)
T PRK08745        149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIA-AAGADTFVAGSAIFN  204 (223)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-HcCCCEEEEChhhhC
Confidence               1123344444443     146688999997 78888888 699999999998543

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=97.48  E-value=0.0055  Score=56.66  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=76.3

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P  188 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~  188 (326)
                      +..|-+..+++++..+.. +++|-.-+..  |. +          ..++.+..+.+++.|+|.+.+.-.|..+.|.+  .
T Consensus       110 ~eeNi~~T~evv~~Ah~~-gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~  188 (286)
T PRK12738        110 FAENVKLVKSVVDFCHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPK  188 (286)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCc
Confidence            345566667777666553 5555443332  11 0          11455666667788999999876666666654  4


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .|++.+++|++.+++|++.-||=.. .++++++. ..|+.-|=+++.+.
T Consensus       189 Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai-~~GI~KiNi~T~l~  236 (286)
T PRK12738        189 IDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI-ELGVTKVNVATELK  236 (286)
T ss_pred             CCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence            6899999999999999997776544 56677777 69999898887643

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=97.47  E-value=0.0052  Score=56.53  Aligned_cols=145  Identities=14%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             CCcEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-
Q 020428           75 RNHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-  152 (326)
Q Consensus        75 ~~p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-  152 (326)
                      ..|++++| .|.+.+...+|.   ..||+.|-+-.           ..-.+..|-+..+++++..+.. +++|-.-+.- 
T Consensus        69 ~VPV~lHLDH~~~~~~i~~ai---~~GftSVMiD~-----------S~l~~eeNi~~t~~vv~~ah~~-gv~VEaElG~i  133 (276)
T cd00947          69 SVPVALHLDHGSSFELIKRAI---RAGFSSVMIDG-----------SHLPFEENVAKTKEVVELAHAY-GVSVEAELGRI  133 (276)
T ss_pred             CCCEEEECCCCCCHHHHHHHH---HhCCCEEEeCC-----------CCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEeee
Confidence            45677777 455555554442   23666555532           1122445666677777666654 5555444332 


Q ss_pred             -CCC---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC---cCCHHHHHHHHHhcCCcEEEeCCCCCH-HHHH
Q 020428          153 -LKS---------SQDTVELARRIEKTGVSALAVHGRKVADRPRD---PAKWGEIADIVAALSIPVIANGDVFEY-DDFQ  218 (326)
Q Consensus       153 -g~~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~  218 (326)
                       |.+         ..++.+..+.+++.|+|.|.+.-.|..+.|.+   ..||+.+++|.+.+++|++.-||=..+ ++++
T Consensus       134 ~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~  213 (276)
T cd00947         134 GGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIR  213 (276)
T ss_pred             cCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence             111         11345555666778999998765555555533   468999999999999999988877665 5588


Q ss_pred             HHHHhcCCcEEEeccch
Q 020428          219 RIKTAAGASSVMAARGA  235 (326)
Q Consensus       219 ~~l~~~Gad~VmiGr~~  235 (326)
                      +++ ..|+.-|=+++.+
T Consensus       214 ~ai-~~Gi~KiNi~T~l  229 (276)
T cd00947         214 KAI-KLGVCKININTDL  229 (276)
T ss_pred             HHH-HcCCeEEEeChHH
Confidence            888 6999989888875

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA

Probab=97.47  E-value=0.0048  Score=60.26  Aligned_cols=124  Identities=13%  Similarity=0.101  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      +.+++++.+.++.. .+||..+-+..|                .+++.-.+.++++|+.+  ++.+.+-...+|+.+++.
T Consensus       194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~  257 (415)
T cd03324         194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI  257 (415)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence            45677776555544 459999888654                24566677889999887  455666666679999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++++.+++.++.+|-       + +..+.+++..+++++.+   ++||.+.=.+.|..++.++++...+|.+++
T Consensus       258 ~~~~~L~~~~l~~iE-------E-P~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~  323 (415)
T cd03324         258 EWVKQLAEFKPWWIE-------E-PTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI  323 (415)
T ss_pred             HHHHHhhccCCCEEE-------C-CCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence            999999999988762       2 22455788899999988   699988778999999999996555787754

rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.46  E-value=0.0012  Score=60.54  Aligned_cols=91  Identities=12%  Similarity=0.249  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCC
Q 020428          131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSI  203 (326)
Q Consensus       131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~i  203 (326)
                      +.+.++.++....  .+|.|-+       ++.+.++.+.++|+|.|.+...          +.+.++++.+.     .++
T Consensus       168 i~~~v~~~k~~~p~~~~I~VEv-------~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~  230 (273)
T PRK05848        168 LKEFIQHARKNIPFTAKIEIEC-------ESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHV  230 (273)
T ss_pred             HHHHHHHHHHhCCCCceEEEEe-------CCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCe
Confidence            4566777776653  5566655       3566677777899998876433          45666665553     245


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      .+.++||| |++.+.++. .+|+|.+.+|.....-|+
T Consensus       231 ~ieAsGgI-t~~ni~~ya-~~GvD~IsvG~l~~sa~~  265 (273)
T PRK05848        231 LLEASGNI-TLENINAYA-KSGVDAISSGSLIHQATW  265 (273)
T ss_pred             EEEEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCCc
Confidence            69999999 999999999 699999999987654443

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=97.45  E-value=0.0053  Score=56.91  Aligned_cols=110  Identities=16%  Similarity=0.212  Sum_probs=75.2

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-c--
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD-P--  188 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~--  188 (326)
                      ..|-+..+++++..... +++|-.-+..  |. +          ..++.+..+.+++.|+|.+.+.-.|..+.|.+ |  
T Consensus       114 eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~  192 (288)
T TIGR00167       114 EENIELTKKVVERAHKM-GVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKG  192 (288)
T ss_pred             HHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCc
Confidence            34555666666665443 5555554432  11 0          01344555566778999999876666666643 3  


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccchh
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .|++.+++|.+.+++|++.-||=..+ +++++++ ..|+.-|=+++.+.
T Consensus       193 Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l~  240 (288)
T TIGR00167       193 LDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAI-SLGVVKVNIDTELQ  240 (288)
T ss_pred             cCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEcChHHH
Confidence            58999999999999999988887766 5788888 68999888888753

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=97.44  E-value=0.006  Score=56.30  Aligned_cols=111  Identities=20%  Similarity=0.273  Sum_probs=75.5

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P  188 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~  188 (326)
                      +..|-+..+++++..+.. +++|-.-+.-  |. +          ..++.+..+.+++.|+|.+.|.-.|..+.|.+  .
T Consensus       108 ~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~  186 (282)
T TIGR01858       108 FAQNVKLVKEVVDFCHRQ-DCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPK  186 (282)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCc
Confidence            344556666666666543 6665544432  10 0          11345555667789999999876666666654  4


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccchh
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .|++.+++|++.+++|++.-||=..+ +++++++ ..|+.-|=+++.+.
T Consensus       187 Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l~  234 (282)
T TIGR01858       187 LDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTI-ELGICKVNVATELK  234 (282)
T ss_pred             cCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence            68999999999999999987765554 5677777 68999898888743

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]

Probab=97.42  E-value=0.0045  Score=59.54  Aligned_cols=123  Identities=20%  Similarity=0.285  Sum_probs=98.9

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~  162 (326)
                      .++...++++.+.+ ||+.+-+..|++...               .-.+.++++|++++  +.+.+-..-+|+..+.+++
T Consensus       143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~  207 (372)
T COG4948         143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL  207 (372)
T ss_pred             CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence            57778888888875 999999999988552               45567888888874  5667777768999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+++.++.++        +.+..+-|.+..+++++.+++||.+.=-+.|..|+.++++...+|.|++
T Consensus       208 ~~~l~~~~l~~i--------EeP~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~  268 (372)
T COG4948         208 ARALEEYGLEWI--------EEPLPPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP  268 (372)
T ss_pred             HHHhcccCcceE--------ECCCCccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence            999999997776        2233455788999999988899999999999999999996444777755

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=97.41  E-value=0.0057  Score=53.71  Aligned_cols=136  Identities=18%  Similarity=0.180  Sum_probs=87.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      +++.-+=..|.-.+  -++++.+ |+|.+-+-+--|                .+-+.+.++..++. +.-+.+-+=-.| 
T Consensus        58 ~IvAD~Kt~D~G~~--e~~ma~~aGAd~~tV~g~A~----------------~~TI~~~i~~A~~~-~~~v~iDl~~~~-  117 (217)
T COG0269          58 IIVADLKTADAGAI--EARMAFEAGADWVTVLGAAD----------------DATIKKAIKVAKEY-GKEVQIDLIGVW-  117 (217)
T ss_pred             eEEeeeeecchhHH--HHHHHHHcCCCEEEEEecCC----------------HHHHHHHHHHHHHc-CCeEEEEeecCC-
Confidence            56666544443222  2334444 899888754333                33445555555443 555555553223 


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-CCHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDP-AKWGEIADIVAALS--IPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-~~~~~i~~i~~~~~--iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                        +..+.++.++++|+|.+.+|-..-.|. .|. ..|+.+.++++..+  .+|-..|||. ++++..+. ..|++.|.+|
T Consensus       118 --~~~~~~~~l~~~gvd~~~~H~g~D~q~-~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~-~~~~~ivIvG  192 (217)
T COG0269         118 --DPEQRAKWLKELGVDQVILHRGRDAQA-AGKSWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFK-GIGADIVIVG  192 (217)
T ss_pred             --CHHHHHHHHHHhCCCEEEEEecccHhh-cCCCccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHh-cCCCCEEEEC
Confidence              456677888889999999993322222 222 23677888887665  7899999995 99999998 6899999999


Q ss_pred             cchhc
Q 020428          233 RGALW  237 (326)
Q Consensus       233 r~~l~  237 (326)
                      |++-.
T Consensus       193 raIt~  197 (217)
T COG0269         193 RAITG  197 (217)
T ss_pred             chhcC
Confidence            99654

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=97.41  E-value=0.0075  Score=55.76  Aligned_cols=110  Identities=18%  Similarity=0.250  Sum_probs=74.5

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC--CC--C---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cC
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL--LK--S---------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--PA  189 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~--~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~  189 (326)
                      ..|-+..+++++..+.. ++.|-.-+.-  |.  +         ..++.+..+.+++.|+|.+.|.-.|..+.|.+  ..
T Consensus       111 eeNi~~T~~vv~~Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~L  189 (284)
T PRK12737        111 EENIAIVKEVVEFCHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKL  189 (284)
T ss_pred             HHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcC
Confidence            34555666666666543 5555444432  11  0         11345666667789999998766666666654  35


Q ss_pred             CHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428          190 KWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       190 ~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ||+.+++|++.+++|++.-||=.. .+++++++ ..|+.-|=|++.+-
T Consensus       190 d~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai-~~Gi~KiNi~T~l~  236 (284)
T PRK12737        190 DFERLAEIREKVSIPLVLHGASGVPDEDVKKAI-SLGICKVNVATELK  236 (284)
T ss_pred             CHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HCCCeEEEeCcHHH
Confidence            899999999999999997776554 45677777 69999998988743

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=97.41  E-value=0.0041  Score=57.34  Aligned_cols=126  Identities=18%  Similarity=0.255  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|-++.          ..|-...-..+.-.++++.+++.+  .+||.+.+.. .+..++++
T Consensus        15 iD~~~~~~~i~~l~~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~   83 (281)
T cd00408          15 VDLDALRRLVEFLIEAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIE   83 (281)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHH
Confidence            477888888888766 999998874          244455556677777787777766  5788887753 46678999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE------EeCCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI------ANGDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi------~nGgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-.-.. .+...-.+++.+|.+.+++||+      ..|---+++.+.++.+
T Consensus        84 ~a~~a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~  149 (281)
T cd00408          84 LARHAEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE  149 (281)
T ss_pred             HHHHHHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence            9999999999999986542211 1112234566788888899987      3466667888888774

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=97.41  E-value=0.00056  Score=61.02  Aligned_cols=70  Identities=17%  Similarity=0.248  Sum_probs=47.3

Q ss_pred             HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          168 KTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      =.|...|-+-..+..  + ++..-+.++..++..++|+|+.|||+|.+++.++. +.|||.|++|..+..|+++
T Consensus       151 ~~g~~~iYLEaGSGa--~-~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~-~aGAD~IVvGn~iee~~~~  220 (230)
T PF01884_consen  151 YLGMPIIYLEAGSGA--Y-GPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMA-EAGADTIVVGNAIEEDPDL  220 (230)
T ss_dssp             HTT-SEEEEE--TTS--S-S-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHH-CTTSSEEEESCHHHHHH-H
T ss_pred             HhCCCEEEEEeCCCC--C-CCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHH-HCCCCEEEECCEEEEcchH
Confidence            367888877653222  2 22223344444445699999999999999999999 6999999999999998873

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK14017 galactonate dehydratase; Provisional

Probab=97.41  E-value=0.0068  Score=58.55  Aligned_cols=141  Identities=16%  Similarity=0.216  Sum_probs=101.4

Q ss_pred             cEEEEECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+-..+++.+++++.+.++.. .+||..+-+..|-+.+.     .+  -..+++.-.+.++++|+.+  ++.+.+-...+
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~-----~~--~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~  187 (382)
T PRK14017        115 RVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQY-----ID--SPRKVDAAVARVAAVREAVGPEIGIGVDFHGR  187 (382)
T ss_pred             eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCccc-----cc--cHHHHHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence            444445566888876555544 45999988865311100     00  0123456677889999887  45666766667


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+.+++.++++.+++.|+.+|-       + +..+.+++..+++++.+++||.+.=.+.|..++..+++...+|.+++-
T Consensus       188 w~~~~A~~~~~~l~~~~~~~iE-------e-P~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d  258 (382)
T PRK14017        188 VHKPMAKVLAKELEPYRPMFIE-------E-PVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPD  258 (382)
T ss_pred             CCHHHHHHHHHhhcccCCCeEE-------C-CCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecC
Confidence            9999999999999999988862       2 223457889999999999999998889999999999975567887764

>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1

Probab=97.40  E-value=0.0069  Score=58.60  Aligned_cols=123  Identities=12%  Similarity=0.181  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.++. ..+||..+-+..|-               .+++.-.+.++++|+.+  ++.+.+-...+|+.++++++
T Consensus       160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~  224 (385)
T cd03326         160 DLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY  224 (385)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence            56666555544 44599999886541               23455567888888887  46677777767999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCC----cEEEe
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGA----SSVMA  231 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Ga----d~Vmi  231 (326)
                      ++.+++.++.+|-       | +..+.|++..+++++.+++||.+.=.+.|..++.++++...+    |.+++
T Consensus       225 ~~~l~~~~~~~iE-------e-P~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~  289 (385)
T cd03326         225 AKALAPYGLRWYE-------E-PGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQF  289 (385)
T ss_pred             HHHhhCcCCCEEE-------C-CCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence            9999999988862       2 234458899999999999999998899999999999954334    66654

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=97.38  E-value=0.0087  Score=55.33  Aligned_cols=111  Identities=19%  Similarity=0.245  Sum_probs=74.7

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC-C-C--C---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL-L-K--S---------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P  188 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~--~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~  188 (326)
                      +..|-+..+++++..+.. +++|-.-+.. | .  .         ..++.+..+.+++.|+|.+.|.-.|..+.|.+  .
T Consensus       110 ~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~  188 (284)
T PRK09195        110 FAQNISLVKEVVDFCHRF-DVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPK  188 (284)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCc
Confidence            445556666666666543 5555544432 1 1  0         01344555666689999998765555555543  4


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .|++.+++|++.+++|++.-||=.. .+++.+++ ..|+.-|=+++.+.
T Consensus       189 Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai-~~Gi~KiNi~T~l~  236 (284)
T PRK09195        189 LDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTI-KLGICKVNVATELK  236 (284)
T ss_pred             CCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence            6899999999999999997776444 46677788 69999999998754

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=97.38  E-value=0.0065  Score=56.61  Aligned_cols=148  Identities=15%  Similarity=0.216  Sum_probs=84.2

Q ss_pred             eecccCCCCcEEEEECCC-----CHHHHHHHHHHhhcCC--CEEEEccC-CCcc----cccccccccc--------ccCC
Q 020428           68 FRTCHQERNHVVFQMGTS-----DAVRALTAAKMVCKDV--AAIDINMG-CPKS----FSVSGGMGAA--------LLSK  127 (326)
Q Consensus        68 ~~~~~~~~~p~~vQl~g~-----~~~~~~~aa~~~~~~~--d~idlN~g-cP~~----~~~~~~~G~~--------l~~~  127 (326)
                      ++...+.+.|+++|+.-.     ..+.+...++.+.+.+  --|-||+- |...    ...+.|+.|-        +..|
T Consensus        34 i~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeN  113 (307)
T PRK05835         34 FEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEEN  113 (307)
T ss_pred             HHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence            444455667888887532     2333444444343322  13445543 2111    1112333322        3344


Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecC--CC-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCC--C--cCC
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRL--LK-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPR--D--PAK  190 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~--g~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~--~~~  190 (326)
                      -+..+++++..+.. +++|-.-+..  |. +          ..++.+..+.+++.|+|.+.+.-.|..+.|.  +  ..|
T Consensus       114 i~~T~~vve~Ah~~-gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~  192 (307)
T PRK05835        114 LELTSKVVKMAHNA-GVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLD  192 (307)
T ss_pred             HHHHHHHHHHHHHc-CCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccC
Confidence            55555665555433 5555544432  11 0          1124566666778999999986666666664  3  468


Q ss_pred             HHHHHHHHHhcCCcEEEeCCCCCHHH
Q 020428          191 WGEIADIVAALSIPVIANGDVFEYDD  216 (326)
Q Consensus       191 ~~~i~~i~~~~~iPVi~nGgI~s~~d  216 (326)
                      |+.+++|++.+++|++.-||=..+++
T Consensus       193 f~~L~~I~~~~~iPLVLHGgSGip~e  218 (307)
T PRK05835        193 FERLQEVKRLTNIPLVLHGASAIPDD  218 (307)
T ss_pred             HHHHHHHHHHhCCCEEEeCCCCCchH
Confidence            99999999999999999998777775

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=97.36  E-value=0.007  Score=56.60  Aligned_cols=159  Identities=16%  Similarity=0.147  Sum_probs=97.7

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCccee---eecccCCCCcEEE-EE-CC--
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV---FRTCHQERNHVVF-QM-GT--   84 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~v-Ql-~g--   84 (326)
                      |...-|.++.+++.+.|++++-++-.......       ..-.+..   -..+.++   -........|+++ -+ ||  
T Consensus        39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~l-------G~~~T~~---Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY  108 (332)
T PLN02424         39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVH-------GHDTTLP---ITLDEMLVHCRAVARGANRPLLVGDLPFGSY  108 (332)
T ss_pred             EEecCCHHHHHHHHHcCCCEEEECCcHHHHhc-------CCCCCCC---cCHHHHHHHHHHHhccCCCCEEEeCCCCCCC
Confidence            34566899999999999998876532211110       0000100   0000101   0111223346665 55 55  


Q ss_pred             -CCHHHHHHHHHHh-hc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---------
Q 020428           85 -SDAVRALTAAKMV-CK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---------  152 (326)
Q Consensus        85 -~~~~~~~~aa~~~-~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---------  152 (326)
                       .++++..+.|.++ ++ |+++|.|-.|.                  ....++++++. ..++||.--+.+         
T Consensus       109 ~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lG  169 (332)
T PLN02424        109 ESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLG  169 (332)
T ss_pred             CCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhc
Confidence             4688777777666 55 89999996542                  22345666666 348998843332         


Q ss_pred             -----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 -----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 -----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                           |.+.   ...++-|+.++++|++.|.+-+.          .-++.++|.+.++||+|+-|
T Consensus       170 GykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V----------p~~la~~It~~l~IPtIGIG  224 (332)
T PLN02424        170 GFRPQGRTAESAVKVVETALALQEAGCFAVVLECV----------PAPVAAAITSALQIPTIGIG  224 (332)
T ss_pred             CccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC----------cHHHHHHHHHhCCCCEEeec
Confidence                 1222   35788899999999999998654          23478899999999999765

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.36  E-value=0.003  Score=55.54  Aligned_cols=149  Identities=14%  Similarity=0.191  Sum_probs=93.5

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----ccc----ccccccccCChHHHHHHHH----------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----SVS----GGMGAALLSKPELIHDILT----------  136 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----~~~----~~~G~~l~~~p~~~~~iv~----------  136 (326)
                      |++.=|.+.++++..+.++.+.+ |+..||+.+-.|...     .++    ---|+.-.-+++.+.+.++          
T Consensus         9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~   88 (204)
T TIGR01182         9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG   88 (204)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC
Confidence            56666788999999999999887 899999988766521     110    1122222334444443332          


Q ss_pred             -------HHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428          137 -------MLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN  208 (326)
Q Consensus       137 -------~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n  208 (326)
                             ..++. ++|+.--+       -+...+..+.++|++.|-+..-..-   .|   ..+++.++.-+ ++|++..
T Consensus        89 ~~~~v~~~~~~~-~i~~iPG~-------~TptEi~~A~~~Ga~~vKlFPA~~~---GG---~~yikal~~plp~i~~~pt  154 (204)
T TIGR01182        89 LTPELAKHAQDH-GIPIIPGV-------ATPSEIMLALELGITALKLFPAEVS---GG---VKMLKALAGPFPQVRFCPT  154 (204)
T ss_pred             CCHHHHHHHHHc-CCcEECCC-------CCHHHHHHHHHCCCCEEEECCchhc---CC---HHHHHHHhccCCCCcEEec
Confidence                   22211 23222211       1223344556688888888753211   11   35677776543 7999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      |||. .+.+.+.+ ..|+.+|.+|+.+.....+
T Consensus       155 GGV~-~~N~~~~l-~aGa~~vg~Gs~L~~~~~~  185 (204)
T TIGR01182       155 GGIN-LANVRDYL-AAPNVACGGGSWLVPKDLI  185 (204)
T ss_pred             CCCC-HHHHHHHH-hCCCEEEEEChhhcCchhh
Confidence            9996 58999999 6999999999987754443

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2

Probab=97.35  E-value=0.0082  Score=57.07  Aligned_cols=131  Identities=15%  Similarity=0.210  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHh-hcCCCEEEEccCC-CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHH
Q 020428           84 TSDAVRALTAAKMV-CKDVAAIDINMGC-PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDT  159 (326)
Q Consensus        84 g~~~~~~~~aa~~~-~~~~d~idlN~gc-P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~  159 (326)
                      ..+++.+.+.++.+ .+||..+-+..|. |..          -..+++.-.+.++++|+.+  ++.+.+-...+|+.+++
T Consensus       118 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~----------~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A  187 (341)
T cd03327         118 PTDLDELPDEAKEYLKEGYRGMKMRFGYGPSD----------GHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYA  187 (341)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCc----------chHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHH
Confidence            35778776555554 4599999887653 100          0023466677889999887  45666666667999999


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .++++.+++.++.+|       ++ +..+.+++..+++++.+++||.+.=.+.+..++.++++...+|.+++-
T Consensus       188 ~~~~~~l~~~~~~~i-------Ee-P~~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d  252 (341)
T cd03327         188 IKMARALEKYELRWI-------EE-PLIPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPD  252 (341)
T ss_pred             HHHHHHhhhcCCccc-------cC-CCCccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecC
Confidence            999999999988765       22 234557899999999999999887789999999999976667877654

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=97.33  E-value=0.0026  Score=60.74  Aligned_cols=109  Identities=25%  Similarity=0.375  Sum_probs=76.1

Q ss_pred             ccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCC-hHHHHHHHHHHHHcCCcEEEEeecccC--CCCCCcCCH----HH
Q 020428          122 AALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKS-SQDTVELARRIEKTGVSALAVHGRKVA--DRPRDPAKW----GE  193 (326)
Q Consensus       122 ~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~----~~  193 (326)
                      +..+.+|+ ..+-++.+|+.. +.||.+-+..... ..+..++.+.++..++|++.+|--...  ..+.+..++    +.
T Consensus        99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~  177 (352)
T PRK05437         99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDN  177 (352)
T ss_pred             HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHH
Confidence            44567888 777788888876 8899887765211 112344556667778999999853211  122344456    56


Q ss_pred             HHHHHHhcCCcEEE--eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          194 IADIVAALSIPVIA--NGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       194 i~~i~~~~~iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+++.+++||+.  +|.-.|.++++.+. +.|+|++.++
T Consensus       178 i~~i~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~Vs  217 (352)
T PRK05437        178 IAEIVSALPVPVIVKEVGFGISKETAKRLA-DAGVKAIDVA  217 (352)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCcHHHHHHHH-HcCCCEEEEC
Confidence            88888888999996  66667899998887 6999999984

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.33  E-value=0.01  Score=54.82  Aligned_cols=111  Identities=19%  Similarity=0.245  Sum_probs=74.6

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC--CC-------C----hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL--LK-------S----SQDTVELARRIEKTGVSALAVHGRKVADRPRD--P  188 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~-------~----~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~  188 (326)
                      +..|-+..+++++..+. .+++|-.-+..  |.       +    ..++.+..+.+++.|+|.+.|.-.|..+.|.+  .
T Consensus       110 ~eeNi~~T~~vv~~Ah~-~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~  188 (284)
T PRK12857        110 LEENIALTKKVVEIAHA-VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPK  188 (284)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCc
Confidence            34555666666666654 25555444332  11       0    11345555666788999998766666666654  4


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .|++.+++|++.+++|++.-||=.. .+++.+++ ..|+.-|=+++.+.
T Consensus       189 Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~~~  236 (284)
T PRK12857        189 LDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAI-SLGVRKVNIDTNIR  236 (284)
T ss_pred             CCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEeCcHHH
Confidence            6899999999999999997776554 45677777 68998888887743

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=97.32  E-value=0.013  Score=52.98  Aligned_cols=141  Identities=18%  Similarity=0.239  Sum_probs=93.5

Q ss_pred             eeecccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        67 ~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      +.+.+.+.+-|++-.++  ++++...+++    .+|.+-|              |+..+.+.+++.    ++.+ .+.||
T Consensus        71 L~~~~~~~Gl~~~Tev~--d~~~v~~~~e----~vdilqI--------------gs~~~~n~~LL~----~va~-tgkPV  125 (250)
T PRK13397         71 LHEVCQEFGLLSVSEIM--SERQLEEAYD----YLDVIQV--------------GARNMQNFEFLK----TLSH-IDKPI  125 (250)
T ss_pred             HHHHHHHcCCCEEEeeC--CHHHHHHHHh----cCCEEEE--------------CcccccCHHHHH----HHHc-cCCeE
Confidence            44556666777777665  3333333332    4577665              466677766544    4433 48999


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEE-Ee-ecccCCCC-CCcCCHHHHHHHHHhcCCcEEEe----CCCCC--HHHH
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALA-VH-GRKVADRP-RDPAKWGEIADIVAALSIPVIAN----GDVFE--YDDF  217 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~-vh-~r~~~~~~-~~~~~~~~i~~i~~~~~iPVi~n----GgI~s--~~d~  217 (326)
                      .+|.....+.++....++.+.+.|..-|. +| |-..-..+ ....|+..+..+++..++|||..    +|.+.  +.-+
T Consensus       126 ilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a  205 (250)
T PRK13397        126 LFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAA  205 (250)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHH
Confidence            99998778889999999999999996555 45 33111111 12568888899998889999874    45433  2345


Q ss_pred             HHHHHhcCCcEEEecc
Q 020428          218 QRIKTAAGASSVMAAR  233 (326)
Q Consensus       218 ~~~l~~~Gad~VmiGr  233 (326)
                      ...+ ..||||+||=+
T Consensus       206 ~AAv-A~GAdGl~IE~  220 (250)
T PRK13397        206 KIAK-AVGANGIMMEV  220 (250)
T ss_pred             HHHH-HhCCCEEEEEe
Confidence            5556 58999999875

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=97.32  E-value=0.013  Score=52.99  Aligned_cols=101  Identities=13%  Similarity=0.211  Sum_probs=74.7

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      .++.+.++++...+ .+.-+.|-+.       ..+.++.+.++|++.|-|..|.-...   ..|.+...++...+  +..
T Consensus       136 ~~~~l~~l~~~a~~-lGle~LVEVh-------~~~El~~a~~~ga~iiGINnRdL~t~---~vd~~~~~~L~~~ip~~~~  204 (247)
T PRK13957        136 TPSQIKSFLKHASS-LGMDVLVEVH-------TEDEAKLALDCGAEIIGINTRDLDTF---QIHQNLVEEVAAFLPPNIV  204 (247)
T ss_pred             CHHHHHHHHHHHHH-cCCceEEEEC-------CHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcE
Confidence            45667777766654 3666666653       23446667778999999988865532   44666677777665  567


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +|+-+||.|++|+.++. .. +|||.||++++..+.
T Consensus       205 ~IsESGI~t~~d~~~l~-~~-~davLvG~~lm~~~d  238 (247)
T PRK13957        205 KVGESGIESRSDLDKFR-KL-VDAALIGTYFMEKKD  238 (247)
T ss_pred             EEEcCCCCCHHHHHHHH-Hh-CCEEEECHHHhCCCC
Confidence            88999999999999988 45 999999999998776

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=97.31  E-value=0.0077  Score=55.85  Aligned_cols=110  Identities=20%  Similarity=0.234  Sum_probs=74.7

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC-C-C----Ch--------HHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL-L-K----SS--------QDTVELARRIEKTGVSALAVHGRKVADRPRD--P  188 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~----~~--------~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~  188 (326)
                      ..|-+..+++++..+.. +++|-.-+.. + .    +.        .++.+..+.+++.|+|.|.+.=.|..+.|.+  .
T Consensus       110 eeNi~~T~~vv~~ah~~-gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~  188 (287)
T PF01116_consen  110 EENIAITREVVEYAHAY-GVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKK  188 (287)
T ss_dssp             HHHHHHHHHHHHHHHHT-T-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSS
T ss_pred             HHHHHHHHHHHHhhhhh-CCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCC
Confidence            34455556666555543 6666555443 1 1    01        1456667777899999999876666666665  3


Q ss_pred             --CCHHHHHHHHHhc-CCcEEEeCCCCCHH-HHHHHHHhcCCcEEEeccchh
Q 020428          189 --AKWGEIADIVAAL-SIPVIANGDVFEYD-DFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       189 --~~~~~i~~i~~~~-~iPVi~nGgI~s~~-d~~~~l~~~Gad~VmiGr~~l  236 (326)
                        .|++.+++|++.+ ++|++.-||=..++ ++.+++ ..|+.-|=+++.+.
T Consensus       189 p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~T~~~  239 (287)
T PF01116_consen  189 PKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAI-KNGISKINIGTELR  239 (287)
T ss_dssp             TC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHH-HTTEEEEEESHHHH
T ss_pred             cccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHH-HcCceEEEEehHHH
Confidence              4789999999999 99999888876654 788888 68999998988754

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=97.30  E-value=0.0052  Score=58.08  Aligned_cols=104  Identities=21%  Similarity=0.267  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC--CCCCcC----CHHHHHHHHHhcC
Q 020428          129 ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD--RPRDPA----KWGEIADIVAALS  202 (326)
Q Consensus       129 ~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~----~~~~i~~i~~~~~  202 (326)
                      +...+-+...++..+.||.+-+. +.+.++..+.++.++++|+|+|.++-.....  ...+..    -.+.++.+++.++
T Consensus        85 ~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~  163 (325)
T cd04739          85 EEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT  163 (325)
T ss_pred             HHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence            34444444455555789988873 5667888999999999999999988653111  111111    1467788888889


Q ss_pred             CcEEE--eCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          203 IPVIA--NGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       203 iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +||++  ++++.+..++.+.+++.|+|++.+.-
T Consensus       164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n  196 (325)
T cd04739         164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN  196 (325)
T ss_pred             CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence            99984  45666777777777789999987743

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.29  E-value=0.0018  Score=57.36  Aligned_cols=77  Identities=17%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             HHHHHHHHcCCcEEEEeeccc---CCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          161 ELARRIEKTGVSALAVHGRKV---ADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~---~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.+..+.+.|+|++.+..--.   ...+..+..|+.+.++.+. .++||++-|||. .+++.+++ .+|++||.+-++++
T Consensus       113 ~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~-~~Ga~GiAvisai~  190 (211)
T PRK03512        113 MEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVL-ATGVGSIAVVSAIT  190 (211)
T ss_pred             HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHH-HcCCCEEEEhhHhh
Confidence            335666788999999865422   2223345678888888776 489999999997 88899999 69999999999987


Q ss_pred             cCc
Q 020428          237 WNA  239 (326)
Q Consensus       237 ~~P  239 (326)
                      ..+
T Consensus       191 ~~~  193 (211)
T PRK03512        191 QAA  193 (211)
T ss_pred             CCC
Confidence            544

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=97.28  E-value=0.0048  Score=57.58  Aligned_cols=86  Identities=21%  Similarity=0.278  Sum_probs=69.3

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~  222 (326)
                      ..|+.+.+-...+.+...+.++.+++.|++.|.+|.-......  ...|+.++++++.+++||+.- ++.|.+++..+. 
T Consensus       115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~-  190 (299)
T cd02809         115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGR--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV-  190 (299)
T ss_pred             CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH-
Confidence            4688888865556778888899999999999999865443221  247899999999999999886 478999999888 


Q ss_pred             hcCCcEEEec
Q 020428          223 AAGASSVMAA  232 (326)
Q Consensus       223 ~~Gad~VmiG  232 (326)
                      +.|+|+|.+.
T Consensus       191 ~~G~d~I~v~  200 (299)
T cd02809         191 DAGADGIVVS  200 (299)
T ss_pred             HCCCCEEEEc
Confidence            6999999884

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd03322 rpsA The starvation sensing protein RpsA from E

Probab=97.27  E-value=0.011  Score=56.71  Aligned_cols=120  Identities=10%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             ECCCCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHH
Q 020428           82 MGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        82 l~g~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~  158 (326)
                      +.+.+++.+.+.++. ..+||..+-+..                       .+.++++++.+  ++.+.+-...+|+.++
T Consensus       122 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~~w~~~~  178 (361)
T cd03322         122 ASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHHRLTPNQ  178 (361)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCCCCCHHH
Confidence            345566766555544 445888887632                       56688888887  4567776666799999


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.++++.+++.++.++-       + +..+.+++..+++++.+++||.+.=.+.|++++..+++...+|.+++-
T Consensus       179 A~~~~~~l~~~~l~~iE-------e-P~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d  244 (361)
T cd03322         179 AARFGKDVEPYRLFWME-------D-PTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTT  244 (361)
T ss_pred             HHHHHHHhhhcCCCEEE-------C-CCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecC
Confidence            99999999999988762       2 224557899999999999999988788999999999965557877664

coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.

>PRK08999 hypothetical protein; Provisional

Probab=97.26  E-value=0.0017  Score=60.83  Aligned_cols=73  Identities=23%  Similarity=0.409  Sum_probs=57.1

Q ss_pred             HHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          161 ELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +-+..+.+.|+|++.+..--....  ...+..++.++++++.+++||++-||| |.+++..++ .+|+++|.+-+++
T Consensus       237 ~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~-~~g~~gva~i~~~  311 (312)
T PRK08999        237 EELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAR-EHGAQGIAGIRGL  311 (312)
T ss_pred             HHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHH-HhCCCEEEEEEEe
Confidence            345667788999999865422111  123556889999999999999999999 899999999 6999999998775

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=97.22  E-value=0.013  Score=53.36  Aligned_cols=158  Identities=22%  Similarity=0.275  Sum_probs=92.9

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCccee---eecccCCCCcEEE-EE-C-CC
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV---FRTCHQERNHVVF-QM-G-TS   85 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~v-Ql-~-g~   85 (326)
                      |.+.=|.++.+++.+.|++.+.+.-.......       ....+..   -..+.++   -..+.....|+++ .+ + +.
T Consensus        19 m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~l-------G~~~t~~---vtldem~~h~~aV~rg~~~~~vv~DmPf~sy   88 (263)
T TIGR00222        19 AITAYDYSFAKLFADAGVDVILVGDSLGMVVL-------GHDSTLP---VTVADMIYHTAAVKRGAPNCLIVTDLPFMSY   88 (263)
T ss_pred             EEeccCHHHHHHHHHcCCCEEEECccHhHHhc-------CCCCCCC---cCHHHHHHHHHHHHhhCCCceEEeCCCcCCC
Confidence            44666999999999999999887622211110       0000100   0000000   0111111234443 44 2 22


Q ss_pred             -CHHHHHHHHH-Hhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE-------EEecC---
Q 020428           86 -DAVRALTAAK-MVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT-------CKIRL---  152 (326)
Q Consensus        86 -~~~~~~~aa~-~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~-------vK~r~---  152 (326)
                       ++++..+.|. .+++ |+++|.|--|                   ..+.+.++++.+. ++||.       ...|.   
T Consensus        89 ~~~e~a~~na~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~~~-gIpV~gHiGltPq~a~~~gg  148 (263)
T TIGR00222        89 ATPEQALKNAARVMQETGANAVKLEGG-------------------EWLVETVQMLTER-GVPVVGHLGLTPQSVNILGG  148 (263)
T ss_pred             CCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHHHC-CCCEEEecCCCceeEeecCC
Confidence             4776655555 4554 8999998642                   3344556666554 78877       33332   


Q ss_pred             ----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 ----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 ----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                          |.+.   +..++-++.++++|++.|.+-+-        |  -+..++|.+.+++|+|+-|
T Consensus       149 y~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v--------p--~~~a~~It~~l~iP~iGIG  202 (263)
T TIGR00222       149 YKVQGKDEEAAKKLLEDALALEEAGAQLLVLECV--------P--VELAAKITEALAIPVIGIG  202 (263)
T ss_pred             eeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC--------c--HHHHHHHHHhCCCCEEeec
Confidence                2232   36888899999999999998654        2  4788999999999998765

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.22  E-value=0.0084  Score=59.80  Aligned_cols=69  Identities=25%  Similarity=0.357  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+.++.+.++|++.|++..-.  +.  ...-++.++.+++.. ++||++ |+|.|.+++..+. +.|||+|-+|
T Consensus       228 ~~~e~a~~L~~agvdvivvD~a~--g~--~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~-~aGad~i~vg  297 (486)
T PRK05567        228 DNEERAEALVEAGVDVLVVDTAH--GH--SEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALI-EAGADAVKVG  297 (486)
T ss_pred             chHHHHHHHHHhCCCEEEEECCC--Cc--chhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHH-HcCCCEEEEC
Confidence            45889999999999988764321  11  112367788888876 899888 9999999999999 6999999876

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=97.21  E-value=0.0043  Score=56.89  Aligned_cols=83  Identities=14%  Similarity=0.285  Sum_probs=59.5

Q ss_pred             HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEEE
Q 020428          132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVIA  207 (326)
Q Consensus       132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi~  207 (326)
                      ..-++.+|+.++  .+|.+-++       +.+-+..+.++|+|+|.+...          ..+.++++.+.++  +||.+
T Consensus       165 ~~av~~~r~~~~~~~~Igvev~-------t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~A  227 (265)
T TIGR00078       165 EKAVKRARAAAPFALKIEVEVE-------SLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEA  227 (265)
T ss_pred             HHHHHHHHHhCCCCCeEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEE
Confidence            344666666653  44555442       345577778999999988432          3366677666553  89999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .||| +.+.+.++. .+|+|++.+|.
T Consensus       228 sGGI-~~~ni~~~a-~~Gvd~Isvga  251 (265)
T TIGR00078       228 SGGI-TLDNLEEYA-ETGVDVISSGA  251 (265)
T ss_pred             ECCC-CHHHHHHHH-HcCCCEEEeCH
Confidence            9999 599999999 69999999954

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=97.20  E-value=0.021  Score=50.48  Aligned_cols=184  Identities=17%  Similarity=0.136  Sum_probs=104.0

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCHHHHH
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRAL   91 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~   91 (326)
                      .+|.++..-..+|.++|++.+.-  +....   +.|          ++..+..+.+....+..-.+++| +...+++...
T Consensus         7 ICGi~~~eda~~~~~~Gad~iGf--I~~~~---S~R----------~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~   70 (210)
T PRK01222          7 ICGITTPEDAEAAAELGADAIGF--VFYPK---SPR----------YVSPEQAAELAAALPPFVKVVGV-FVNASDEEID   70 (210)
T ss_pred             ECCCCcHHHHHHHHHcCCCEEEE--ccCCC---CCC----------cCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHH
Confidence            46889998889999999876642  21000   000          00000001112222221223443 2245677776


Q ss_pred             HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC
Q 020428           92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV  171 (326)
Q Consensus        92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~  171 (326)
                      +.++..  +.|.|.||...+                +++    ++.+++..++++.-.++.... .+... +... ...+
T Consensus        71 ~~~~~~--~~d~vQLHg~e~----------------~~~----~~~l~~~~~~~iik~i~v~~~-~~l~~-~~~~-~~~~  125 (210)
T PRK01222         71 EIVETV--PLDLLQLHGDET----------------PEF----CRQLKRRYGLPVIKALRVRSA-GDLEA-AAAY-YGDA  125 (210)
T ss_pred             HHHHhc--CCCEEEECCCCC----------------HHH----HHHHHhhcCCcEEEEEecCCH-HHHHH-HHhh-hccC
Confidence            665532  679999985432                222    556665556777655554321 12211 1111 1258


Q ss_pred             cEEEEeecccC-CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          172 SALAVHGRKVA-DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       172 d~i~vh~r~~~-~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |++.+...+.. +......||+.+.   +..+.|++..|||. ++.+.++++..+..||=+.+|+=..|.
T Consensus       126 d~~L~Ds~~~~~GGtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~G  191 (210)
T PRK01222        126 DGLLLDAYVGLPGGTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAPG  191 (210)
T ss_pred             CEEEEcCCCCCCCCCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCCC
Confidence            99988765531 1222356898872   12367999999995 888988886678899999998665454

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=97.20  E-value=0.0083  Score=61.93  Aligned_cols=102  Identities=19%  Similarity=0.303  Sum_probs=75.6

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      +++.+.++++...+ .+.-+.|-+.       ..+.++.+.++|++.|-|..|.-...   ..|.+...++...+  ++.
T Consensus       145 ~~~~l~~l~~~a~~-lGme~LvEvh-------~~~el~~a~~~ga~iiGINnRdL~tf---~vd~~~t~~L~~~ip~~~~  213 (695)
T PRK13802        145 DDAQLKHLLDLAHE-LGMTVLVETH-------TREEIERAIAAGAKVIGINARNLKDL---KVDVNKYNELAADLPDDVI  213 (695)
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeC-------CHHHHHHHHhCCCCEEEEeCCCCccc---eeCHHHHHHHHhhCCCCcE
Confidence            34566666666654 3666666653       23445666778999888888865532   44667777777665  567


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +|+-+||.|++|+.++. ..|+|+|.||.++|..|+
T Consensus       214 ~VsESGI~~~~d~~~l~-~~G~davLIGeslm~~~d  248 (695)
T PRK13802        214 KVAESGVFGAVEVEDYA-RAGADAVLVGEGVATADD  248 (695)
T ss_pred             EEEcCCCCCHHHHHHHH-HCCCCEEEECHHhhCCCC
Confidence            88999999999999999 699999999999999765

>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases

Probab=97.19  E-value=0.021  Score=54.86  Aligned_cols=132  Identities=14%  Similarity=0.254  Sum_probs=94.0

Q ss_pred             cEEEEECCCCHH-HHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC
Q 020428           77 HVVFQMGTSDAV-RALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~-~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~  152 (326)
                      |+-..+...+++ .+.++.+.+. .||..+-+-.|-               .+++.-.+.++++++.++  +.+.+-..-
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~~re~~g~~~~l~~DaN~  196 (368)
T TIGR02534       132 DVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGA---------------RDPADDVAHVVAIAKALGDRASVRVDVNA  196 (368)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeCC---------------CCcHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence            444444444544 4444444444 489888875431               235555677888888873  445555555


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +|+.+++.++++.+++.++.+|       + .+..+.+++.++++++.+++||.+.-.+.+..++.++++..++|.+++
T Consensus       197 ~~~~~~A~~~~~~l~~~~~~~i-------E-eP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~  267 (368)
T TIGR02534       197 AWDERTALHYLPQLADAGVELI-------E-QPTPAENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFAL  267 (368)
T ss_pred             CCCHHHHHHHHHHHHhcChhhe-------E-CCCCcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence            6999999999999999887665       2 222345788899999999999999888999999999997667898876

This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=97.19  E-value=0.01  Score=54.34  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=81.3

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE-eecccC--CCCCCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV-HGRKVA--DRPRDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v-h~r~~~--~~~~~~~~~~~i~~  196 (326)
                      -|+..+.+.+++.    ++. ..+.||.+|.....+.++....++.+.+.|.+-|++ |..+..  .......|+..+..
T Consensus       114 I~s~~~~n~~LL~----~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~  188 (260)
T TIGR01361       114 IGARNMQNFELLK----EVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPV  188 (260)
T ss_pred             ECcccccCHHHHH----HHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHH
Confidence            3566777777544    443 458999999988778889999999999999976665 532322  22334678999999


Q ss_pred             HHHhcCCcEEE-eCCCCC-----HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          197 IVAALSIPVIA-NGDVFE-----YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       197 i~~~~~iPVi~-nGgI~s-----~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +++..++||+. .+-...     +..+.... ..||+|+||=+=+--+..+
T Consensus       189 lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAv-a~Ga~gl~iE~H~t~d~a~  238 (260)
T TIGR01361       189 LKKETHLPIIVDPSHAAGRRDLVIPLAKAAI-AAGADGLMIEVHPDPEKAL  238 (260)
T ss_pred             HHHhhCCCEEEcCCCCCCccchHHHHHHHHH-HcCCCEEEEEeCCCccccC
Confidence            99888999999 333222     44455566 5899999888655444444

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.014  Score=54.42  Aligned_cols=125  Identities=19%  Similarity=0.259  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+++.+  .+||.+-+. +.+.+++++
T Consensus        22 vD~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~eai~   90 (299)
T COG0329          22 VDEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAEAIE   90 (299)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHHHHH
Confidence            577888888887766 999998864          244445556777788888888877  477777664 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..-.-... +....++.++.|.+++++|+| +|     |-=.+++.+.++-
T Consensus        91 lak~a~~~Gad~il~v~PyY~k~-~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la  155 (299)
T COG0329          91 LAKHAEKLGADGILVVPPYYNKP-SQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLA  155 (299)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCC-ChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence            99999999999998865421111 112235677888888899875 55     4446677776665

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=97.17  E-value=0.0056  Score=58.06  Aligned_cols=111  Identities=23%  Similarity=0.302  Sum_probs=75.2

Q ss_pred             cccccCChHHHHHHHHHHhh-cccCcEEEEecCCCCh-HHHHHHHHHHHHcCCcEEEEeecccC--CCCCCcCCH----H
Q 020428          121 GAALLSKPELIHDILTMLKR-NLDVPVTCKIRLLKSS-QDTVELARRIEKTGVSALAVHGRKVA--DRPRDPAKW----G  192 (326)
Q Consensus       121 G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r~g~~~-~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~----~  192 (326)
                      +++.+.+|+...+. +.+++ ..++|+.+-+...... ....++.+.++..++|++.+|--...  ..+.+..++    +
T Consensus        91 ~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le  169 (333)
T TIGR02151        91 QRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLE  169 (333)
T ss_pred             chhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHH
Confidence            34456689877776 77777 5689999877542111 11445566666667888888742111  122334455    6


Q ss_pred             HHHHHHHhcCCcEEE--eCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          193 EIADIVAALSIPVIA--NGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       193 ~i~~i~~~~~iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .++.+++.+++||+.  +|.-.+.++++.+. +.|+|+|.++-
T Consensus       170 ~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~-~aGvd~I~Vsg  211 (333)
T TIGR02151       170 KIAEICSQLSVPVIVKEVGFGISKEVAKLLA-DAGVSAIDVAG  211 (333)
T ss_pred             HHHHHHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEECC
Confidence            788899999999985  56557888888777 69999999963

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=97.16  E-value=0.02  Score=54.07  Aligned_cols=81  Identities=16%  Similarity=0.062  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecc-------------cCCCCC---CcCCHHHHHHHHHhc---CCcEEEeCCCC-CHHHH
Q 020428          158 DTVELARRIEKTGVSALAVHGRK-------------VADRPR---DPAKWGEIADIVAAL---SIPVIANGDVF-EYDDF  217 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~-------------~~~~~~---~~~~~~~i~~i~~~~---~iPVi~nGgI~-s~~d~  217 (326)
                      -....++...+.|+|.|-+---+             ..-.|.   -...-+.++.+.+.+   ++||+..||=. +.+++
T Consensus       218 ~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~  297 (348)
T PRK09250        218 LTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDL  297 (348)
T ss_pred             HHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHH
Confidence            34555677789999999764221             111111   112345566667777   79999888877 44444


Q ss_pred             H----HH---HHhcCCcEEEeccchhcCc
Q 020428          218 Q----RI---KTAAGASSVMAARGALWNA  239 (326)
Q Consensus       218 ~----~~---l~~~Gad~VmiGr~~l~~P  239 (326)
                      .    ..   + +.|+.|+.+||-+...|
T Consensus       298 L~~v~~a~~~i-~aGa~Gv~iGRNIfQ~~  325 (348)
T PRK09250        298 LDAVRTAVINK-RAGGMGLIIGRKAFQRP  325 (348)
T ss_pred             HHHHHHHHHhh-hcCCcchhhchhhhcCC
Confidence            3    44   4 47999999999755444

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.16  E-value=0.0041  Score=57.56  Aligned_cols=91  Identities=10%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH-----hcCC
Q 020428          131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA-----ALSI  203 (326)
Q Consensus       131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~-----~~~i  203 (326)
                      +.+.++.+++.++  .+|.|-+       ++.+-+..+.++|+|.|-+...          ..+.++++.+     ..++
T Consensus       182 i~~av~~~r~~~~~~~~I~VEv-------~tleea~eA~~~GaD~I~LDn~----------~~e~l~~av~~~~~~~~~i  244 (288)
T PRK07428        182 IGEAITRIRQRIPYPLTIEVET-------ETLEQVQEALEYGADIIMLDNM----------PVDLMQQAVQLIRQQNPRV  244 (288)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEC-------CCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHHHhcCCCe
Confidence            3455666666553  3344443       2344555666899999988733          2344444333     3478


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |+.++||| +.+.+.++. .+|+|++.+|+....-|+
T Consensus       245 ~leAsGGI-t~~ni~~ya-~tGvD~Isvgsl~~sa~~  279 (288)
T PRK07428        245 KIEASGNI-TLETIRAVA-ETGVDYISSSAPITRSPW  279 (288)
T ss_pred             EEEEECCC-CHHHHHHHH-HcCCCEEEEchhhhCCCc
Confidence            99999999 599999998 699999999997765554

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=97.16  E-value=0.011  Score=53.73  Aligned_cols=159  Identities=22%  Similarity=0.213  Sum_probs=96.0

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCceec-ccccccccccccccCcccccccCCcceeeecccCCCCc-EEEEEC-C---CC
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNH-VVFQMG-T---SD   86 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~vQl~-g---~~   86 (326)
                      .+.-|..+.+++.+.|++.++|..... ..+.+      .+.....+-+.  ....-..+...+.| +++-+. |   ++
T Consensus        17 ~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~------pDt~~vtl~em--~~~~~~V~r~~~~p~viaD~~fg~y~~~   88 (254)
T cd06557          17 LTAYDYPTAKLADEAGVDVILVGDSLGMVVLGY------DSTLPVTLDEM--IYHTRAVRRGAPRALVVADMPFGSYQTS   88 (254)
T ss_pred             EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCC------CCCCCcCHHHH--HHHHHHHHhcCCCCeEEEeCCCCcccCC
Confidence            366799999999999999998763222 11211      11111110000  00000112223346 666562 3   45


Q ss_pred             HHHHHHH-HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC------------
Q 020428           87 AVRALTA-AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL------------  152 (326)
Q Consensus        87 ~~~~~~a-a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~------------  152 (326)
                      +++..+. .+.+++ |+++|.|--|                   +...+.+++++++ ++||..-+.+            
T Consensus        89 ~~~av~~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~  148 (254)
T cd06557          89 PEQALRNAARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYK  148 (254)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCce
Confidence            7776555 455664 9999998543                   3555667777654 7776622221            


Q ss_pred             --CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 --LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 --g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                        +.+   .++.++-++.++++|++.|.+-+-          .-+.+++|.+.+++|+|+-|
T Consensus       149 ~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----------~~~~~~~i~~~v~iP~igiG  200 (254)
T cd06557         149 VQGKTEEEAERLLEDALALEEAGAFALVLECV----------PAELAKEITEALSIPTIGIG  200 (254)
T ss_pred             eccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEec
Confidence              222   256888899999999999988653          13688999999999999766

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=97.15  E-value=0.018  Score=53.92  Aligned_cols=96  Identities=16%  Similarity=0.272  Sum_probs=60.3

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC-C-C-C--------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC------
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL-L-K-S--------SQDTVELARRIEKTGVSALAVHGRKVADRPRD------  187 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~-~--------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~------  187 (326)
                      ..|-+..+++++..+. .+++|-.-+.. + . +        ..++.+..+.+++.|+|.+.+.-.|..+.|.+      
T Consensus       122 eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~  200 (321)
T PRK07084        122 EENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCP  200 (321)
T ss_pred             HHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCC
Confidence            3455556666665553 25555444332 1 1 0        11355555666778999998766666555543      


Q ss_pred             -cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHH
Q 020428          188 -PAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIK  221 (326)
Q Consensus       188 -~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l  221 (326)
                       ..||+.+++|.+.+ ++|++.-||=..+++..+.+
T Consensus       201 p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~  236 (321)
T PRK07084        201 PPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTI  236 (321)
T ss_pred             CccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHH
Confidence             36899999999999 79999888865554433333

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.14  E-value=0.005  Score=56.72  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=62.2

Q ss_pred             HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEE
Q 020428          131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVI  206 (326)
Q Consensus       131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi  206 (326)
                      +.+-++.+|+..+  ..|.+-+       ++.+.++.+.+.|+|+|.+.          ....+.++++++..+  +|+.
T Consensus       174 ~~~~v~~aR~~~~~~~~Igvsv-------~tleea~~A~~~gaDyI~lD----------~~~~e~l~~~~~~~~~~i~i~  236 (277)
T PRK08072        174 ITKAVTSVREKLGHMVKIEVET-------ETEEQVREAVAAGADIIMFD----------NRTPDEIREFVKLVPSAIVTE  236 (277)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEe-------CCHHHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHhcCCCceEE
Confidence            3455666666653  2333333       23455666678999999882          134577777777654  7778


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +.||| +.+.+.++. .+|+|++.+|.-...-|
T Consensus       237 AiGGI-t~~ni~~~a-~~Gvd~IAvg~l~~sa~  267 (277)
T PRK08072        237 ASGGI-TLENLPAYG-GTGVDYISLGFLTHSVK  267 (277)
T ss_pred             EECCC-CHHHHHHHH-HcCCCEEEEChhhcCCc
Confidence            99999 699999999 69999999997544333

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=97.14  E-value=0.0087  Score=52.95  Aligned_cols=144  Identities=19%  Similarity=0.163  Sum_probs=84.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      ++.+-|=-.+.++..+.++.+.+..++|+++..+=              .  .+-.++++++++...+++.+|+-.-  .
T Consensus         5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~--------------~--~~G~~~v~~ir~~~~i~~D~k~~di--~   66 (215)
T PRK13813          5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPLV--------------L--ASGLGIIEELKRYAPVIADLKVADI--P   66 (215)
T ss_pred             CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHH--------------H--hhCHHHHHHHHhcCCEEEEeecccc--H
Confidence            45555545566666666665544567888764321              1  1113667777877677777888421  1


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCC----------CC----------C-----------------------------C
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVAD----------RP----------R-----------------------------D  187 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~----------~~----------~-----------------------------~  187 (326)
                      .+....++.+.++|+|.+++|......          .+          +                             .
T Consensus        67 ~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~  146 (215)
T PRK13813         67 NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP  146 (215)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence            223334477778999999999653200          00          0                             0


Q ss_pred             cCCHHHHHHHHHhcCCc-EEEeCCCCCH-HHHHHHHHhcCCcEEEeccchhcCc
Q 020428          188 PAKWGEIADIVAALSIP-VIANGDVFEY-DDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       188 ~~~~~~i~~i~~~~~iP-Vi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +...+.++++++..+-+ .+..|||+.. .++..++ ..|+|++++||+++..+
T Consensus       147 ~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~-~aGad~iV~Gr~I~~~~  199 (215)
T PRK13813        147 ATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAI-KAGADYVIVGRSIYNAA  199 (215)
T ss_pred             CCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHH-HcCCCEEEECcccCCCC
Confidence            11123334554444333 3477999864 2477788 58999999999966544

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=97.14  E-value=0.0021  Score=56.49  Aligned_cols=141  Identities=13%  Similarity=0.192  Sum_probs=87.8

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +..+|...|...+.+..+.+.+ |+|.  +|+-=|.=+|+             .-+--++++++++.+++|+.|=+=. .
T Consensus         2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn-------------~~~g~~~i~~i~~~~~~~~DvHLMv-~   67 (201)
T PF00834_consen    2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN-------------LTFGPDIIKAIRKITDLPLDVHLMV-E   67 (201)
T ss_dssp             EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS-------------B-B-HHHHHHHHTTSSSEEEEEEES-S
T ss_pred             eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc-------------ccCCHHHHHHHhhcCCCcEEEEeee-c
Confidence            5667778888888888888876 7874  56644432222             1123456788888888898887743 1


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCCc-
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRDP-  188 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~~-  188 (326)
                         ++..+++.+.++|++.|++|.....                                             .++.|. 
T Consensus        68 ---~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~  144 (201)
T PF00834_consen   68 ---NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK  144 (201)
T ss_dssp             ---SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred             ---cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence               3445677788888888888854321                                             111121 


Q ss_pred             ---CCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          189 ---AKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       189 ---~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                         ..++-|+++++.     .++.|..-|||+ .+.+..+. +.|||.+++||++..
T Consensus       145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~-~aGad~~V~Gs~iF~  199 (201)
T PF00834_consen  145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLV-EAGADIFVAGSAIFK  199 (201)
T ss_dssp             -HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHH-HHT--EEEESHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHH-HcCCCEEEECHHHhC
Confidence               123344444432     358899999997 55777888 699999999998765

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=97.12  E-value=0.0031  Score=54.38  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +...++..+..+.+...---.+++-...+.+..+|+ |++++.++.+...-||+..|||.-.||.+.+. ..|++||.+|
T Consensus       133 ~~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~-~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~-~~Gv~gvLva  210 (229)
T COG1411         133 GPWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKSGP-DYELLTKVLELSEHPVLLGGGVGGMEDLELLL-GMGVSGVLVA  210 (229)
T ss_pred             CCCchhHHHHHHHHhccCCCCeEEEEccccccccCC-CHHHHHHHHHhccCceeecCCcCcHHHHHHHh-cCCCceeeeh
Confidence            344778888888887665555555555555554444 89999999999999999999999999999888 5999999999


Q ss_pred             cchhc
Q 020428          233 RGALW  237 (326)
Q Consensus       233 r~~l~  237 (326)
                      |++..
T Consensus       211 Talh~  215 (229)
T COG1411         211 TALHE  215 (229)
T ss_pred             hhhhc
Confidence            99654

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=97.12  E-value=0.032  Score=52.07  Aligned_cols=91  Identities=15%  Similarity=0.291  Sum_probs=63.0

Q ss_pred             hcccCcEEEEecCCCChHHHHHHHHHHHHcC-CcEEEEeecccCCCC---C----CcCCHHHHHHHHHhcCCcEEE--eC
Q 020428          140 RNLDVPVTCKIRLLKSSQDTVELARRIEKTG-VSALAVHGRKVADRP---R----DPAKWGEIADIVAALSIPVIA--NG  209 (326)
Q Consensus       140 ~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~---~----~~~~~~~i~~i~~~~~iPVi~--nG  209 (326)
                      +..+.|+.+-+. +.+.++..+.|+.++++| +|+|.++........   .    ...-++.++.+++.+++||++  +.
T Consensus        88 ~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~  166 (301)
T PRK07259         88 EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP  166 (301)
T ss_pred             hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            344789988885 567889999999999999 999998532211111   0    112356677888888999985  44


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEe
Q 020428          210 DVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       210 gI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+..++.+.+++.|+|++.+
T Consensus       167 ~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        167 NVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             CchhHHHHHHHHHHcCCCEEEE
Confidence            4555555666666899999865

>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway

Probab=97.12  E-value=0.029  Score=53.76  Aligned_cols=132  Identities=16%  Similarity=0.242  Sum_probs=92.7

Q ss_pred             cEEEEECCCCHHHH-HHHHHHhhcC-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC
Q 020428           77 HVVFQMGTSDAVRA-LTAAKMVCKD-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~-~~aa~~~~~~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~  152 (326)
                      |+-..+...++++. .++.+.+.+| |..+-+-.|-               .+++.-.+.++++++.++  +.+.+-..-
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN~  197 (365)
T cd03318         133 PVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVNQ  197 (365)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            44434444454444 4455555568 9988886541               134445567888888774  445555555


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +|+..++.++++.+++.|+.+|       + .+..+.+++..+++++..++||.+.=.+.+.+++.++++...+|.+++
T Consensus       198 ~~~~~~A~~~~~~l~~~~~~~i-------E-eP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~  268 (365)
T cd03318         198 AWDESTAIRALPRLEAAGVELI-------E-QPVPRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSL  268 (365)
T ss_pred             CCCHHHHHHHHHHHHhcCccee-------e-CCCCcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEE
Confidence            6899999999999999987765       1 122344788899999999999998778899999999996556788755

This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.

>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway

Probab=97.11  E-value=0.02  Score=52.31  Aligned_cols=132  Identities=12%  Similarity=0.118  Sum_probs=91.8

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g  153 (326)
                      .|+..-+.+.+++...++.+....||..+-+-+|               -.+++.-.+.++++++.++  ..+.+-..-+
T Consensus        73 v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~  137 (263)
T cd03320          73 IPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDANGG  137 (263)
T ss_pred             cceeEEecCCCHHHHHHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCCCC
Confidence            3555556666665555544445459998888654               1234555677888888763  4455555557


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+.+++..+++.+++.++.+|-       |. ..+.+++..+++.  .++||.+.=.+.+..++.++++...+|.+++=
T Consensus       138 w~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k  206 (263)
T cd03320         138 WSLEEALAFLEALAAGRIEYIE-------QP-LPPDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGALVLK  206 (263)
T ss_pred             CCHHHHHHHHHhhcccCCceEE-------CC-CChHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEEEEC
Confidence            9999999999999998887762       22 2244677777776  78999998889999999999965567777653

Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.11  E-value=0.021  Score=50.90  Aligned_cols=138  Identities=11%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      +++.=+.+.++++....++.+.+ |+..|||.+-.|..              .+.+.++.+...+..+ -+.+-...   
T Consensus        16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a--------------~~~i~~l~~~~~~~~p-~~~vGaGT---   77 (222)
T PRK07114         16 GMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFA--------------HEVFAELVKYAAKELP-GMILGVGS---   77 (222)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH--------------HHHHHHHHHHHHhhCC-CeEEeeEe---
Confidence            56666788999999999999887 89999998866643              1222222222222211 02111111   


Q ss_pred             hHHHHHHHHHHHHcCCcEEE-----------------------------------------EeecccCCCCCCcCCHHHH
Q 020428          156 SQDTVELARRIEKTGVSALA-----------------------------------------VHGRKVADRPRDPAKWGEI  194 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~-----------------------------------------vh~r~~~~~~~~~~~~~~i  194 (326)
                       --+.+-++.+.++|++++.                                         +..-       +.....++
T Consensus        78 -Vl~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA-------~~~G~~~i  149 (222)
T PRK07114         78 -IVDAATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPG-------SVYGPGFV  149 (222)
T ss_pred             -CcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcc-------cccCHHHH
Confidence             0112233444455555544                                         3321       01124566


Q ss_pred             HHHHHhc-CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          195 ADIVAAL-SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       195 ~~i~~~~-~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +.++.-+ ++|++..|||.. .+++.+.+ ..|+.+|.+|+.+..+.++
T Consensus       150 kal~~p~p~i~~~ptGGV~~~~~n~~~yl-~aGa~avg~Gs~L~~~~~~  197 (222)
T PRK07114        150 KAIKGPMPWTKIMPTGGVEPTEENLKKWF-GAGVTCVGMGSKLIPKEAL  197 (222)
T ss_pred             HHHhccCCCCeEEeCCCCCcchhcHHHHH-hCCCEEEEEChhhcCcccc
Confidence            6666533 689999999984 58999999 5999999999987755543

>PRK08227 autoinducer 2 aldolase; Validated

Probab=97.10  E-value=0.012  Score=53.74  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             ccCcEEEEecCCC---C-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC-CHHH
Q 020428          142 LDVPVTCKIRLLK---S-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF-EYDD  216 (326)
Q Consensus       142 ~~~pv~vK~r~g~---~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~-s~~d  216 (326)
                      .++|+.+=...|.   + .+-....++...+.|+|.|-+-       |.+    +.++++.+.+.+||+..||=. +.++
T Consensus       139 ~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~-------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~  207 (264)
T PRK08227        139 YGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY-------YVE----EGFERITAGCPVPIVIAGGKKLPERD  207 (264)
T ss_pred             hCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC-------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHH
Confidence            4899887222242   2 2234445677789999999653       222    678888888999999998876 3344


Q ss_pred             HHH----HHHhcCCcEEEeccchhcC
Q 020428          217 FQR----IKTAAGASSVMAARGALWN  238 (326)
Q Consensus       217 ~~~----~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.+    .+ +.||.||.+||-+...
T Consensus       208 ~L~~v~~ai-~aGa~Gv~~GRNIfQ~  232 (264)
T PRK08227        208 ALEMCYQAI-DEGASGVDMGRNIFQS  232 (264)
T ss_pred             HHHHHHHHH-HcCCceeeechhhhcc
Confidence            443    44 4899999999975543

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=97.09  E-value=0.0065  Score=55.82  Aligned_cols=85  Identities=12%  Similarity=0.222  Sum_probs=61.8

Q ss_pred             HHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          133 DILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       133 ~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      .-++.+|+..+  .+|.+-++       +.+.+..+.++|+|+|.+...          ..+.++++.+..  ++|+.+.
T Consensus       170 ~~v~~~r~~~~~~~~Igvev~-------s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~Ai  232 (268)
T cd01572         170 EAVRRARAAAPFTLKIEVEVE-------TLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEAS  232 (268)
T ss_pred             HHHHHHHHhCCCCCeEEEEEC-------CHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEE
Confidence            34566666653  34444442       245566677899999988543          357777777766  5999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ||| +.+.+.++. .+|+|++.+|+-..
T Consensus       233 GGI-~~~ni~~~a-~~Gvd~Iav~sl~~  258 (268)
T cd01572         233 GGI-TLENIRAYA-ETGVDYISVGALTH  258 (268)
T ss_pred             CCC-CHHHHHHHH-HcCCCEEEEEeeec
Confidence            999 589999999 69999999998554

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=97.09  E-value=0.02  Score=54.23  Aligned_cols=76  Identities=22%  Similarity=0.148  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCC---c----CCHHHHHHHHHhc-CCcEEEeCCCCCH----------------
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRD---P----AKWGEIADIVAAL-SIPVIANGDVFEY----------------  214 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~----~~~~~i~~i~~~~-~iPVi~nGgI~s~----------------  214 (326)
                      +.+..+.+++.|+|.+.+.-.|..+.|.+   |    .+++.+++|.+.+ ++|++.-||=..+                
T Consensus       173 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~  252 (347)
T TIGR01521       173 PEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKE  252 (347)
T ss_pred             HHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccc
Confidence            45566667789999998765555555543   3    7899999999999 7999988876655                


Q ss_pred             ------HHHHHHHHhcCCcEEEeccch
Q 020428          215 ------DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       215 ------~d~~~~l~~~Gad~VmiGr~~  235 (326)
                            +++++++ +.|+.-|=|++.+
T Consensus       253 ~~g~p~e~i~~ai-~~GI~KVNi~Tdl  278 (347)
T TIGR01521       253 TYGVPVEEIVEGI-KYGVRKVNIDTDL  278 (347)
T ss_pred             cCCCCHHHHHHHH-HCCCeeEEeChHH
Confidence                  6667777 5777777776654

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.09  E-value=0.021  Score=54.13  Aligned_cols=78  Identities=23%  Similarity=0.191  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCC---c----CCHHHHHHHHHhc-CCcEEEeCCCCC----------------
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRD---P----AKWGEIADIVAAL-SIPVIANGDVFE----------------  213 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~----~~~~~i~~i~~~~-~iPVi~nGgI~s----------------  213 (326)
                      ++.+..+.+++.|+|.|.|.-.|..+.|.+   |    .+++.+++|++.+ ++|++.-||=..                
T Consensus       174 ~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~  253 (347)
T PRK09196        174 DPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMP  253 (347)
T ss_pred             CHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence            356666777889999998655555545543   3    6899999999999 799998886544                


Q ss_pred             ------HHHHHHHHHhcCCcEEEeccchh
Q 020428          214 ------YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       214 ------~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                            .+++++++ ..|+.-|=+++.+.
T Consensus       254 ~~~G~~~e~i~~ai-~~GI~KINi~Tdl~  281 (347)
T PRK09196        254 ETYGVPVEEIQEGI-KHGVRKVNIDTDLR  281 (347)
T ss_pred             ccCCCCHHHHHHHH-HCCCceEEeChHHH
Confidence                  36677777 57777777776643

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.08  E-value=0.0067  Score=55.87  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .+.+..+.++|+|+|.+.          +...+.++++.+..  ++|+.+.||| +.+.+.++. .+|+|++.+|.-...
T Consensus       199 leea~eA~~~gaD~I~LD----------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a-~tGvD~Isvg~lt~s  266 (277)
T PRK05742        199 LDELRQALAAGADIVMLD----------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIA-ETGVDYISIGAMTKD  266 (277)
T ss_pred             HHHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHH-HcCCCEEEEChhhcC
Confidence            555667778999999763          22456677766655  8999999999 599999998 699999999975444


Q ss_pred             Ccc
Q 020428          238 NAS  240 (326)
Q Consensus       238 ~P~  240 (326)
                      -|+
T Consensus       267 ~~~  269 (277)
T PRK05742        267 VKA  269 (277)
T ss_pred             Ccc
Confidence            343

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=97.07  E-value=0.009  Score=54.80  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=80.5

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec---ccCCCCCCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR---KVADRPRDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r---~~~~~~~~~~~~~~i~~  196 (326)
                      .|+..+.+.+++.++     ...+.||.+|.....+.++....++.+...|-.-+++--|   +....+....|+..+..
T Consensus       116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~  190 (266)
T PRK13398        116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAV  190 (266)
T ss_pred             ECcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHH
Confidence            356677776665544     3568999999988778888888899999999866554333   22222223457778888


Q ss_pred             HHHhcCCcEEE-eCCCCC-----HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          197 IVAALSIPVIA-NGDVFE-----YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       197 i~~~~~iPVi~-nGgI~s-----~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +++..++||++ ..--..     +..+...+ ..||+|+||=+-+--+..+
T Consensus       191 lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~  240 (266)
T PRK13398        191 IKELSHLPIIVDPSHATGRRELVIPMAKAAI-AAGADGLMIEVHPEPEKAL  240 (266)
T ss_pred             HHhccCCCEEEeCCCcccchhhHHHHHHHHH-HcCCCEEEEeccCCccccC
Confidence            88888999998 343333     55566666 5899999998765544444

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.07  E-value=0.0044  Score=58.98  Aligned_cols=118  Identities=20%  Similarity=0.298  Sum_probs=78.0

Q ss_pred             HhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEE
Q 020428           96 MVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSAL  174 (326)
Q Consensus        96 ~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i  174 (326)
                      .++.|+|.|-|..+-        |       +-..-.++++.+++.. ...|..--      .-+.+-++.|-.+|+|.+
T Consensus       259 l~~aGvdvviLDSSq--------G-------nS~~qiemik~iK~~yP~l~ViaGN------VVT~~qa~nLI~aGaDgL  317 (503)
T KOG2550|consen  259 LVQAGVDVVILDSSQ--------G-------NSIYQLEMIKYIKETYPDLQIIAGN------VVTKEQAANLIAAGADGL  317 (503)
T ss_pred             hhhcCCcEEEEecCC--------C-------cchhHHHHHHHHHhhCCCceeeccc------eeeHHHHHHHHHccCcee
Confidence            344588887775321        1       2235567888888875 33333211      124567888999999999


Q ss_pred             EEe------ecccC----CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          175 AVH------GRKVA----DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       175 ~vh------~r~~~----~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .|-      ..|.+    ++..+.+-+ -+.+.+...++|||+-|||.+..++.+.+ ..||+.||+|.=+-
T Consensus       318 rVGMGsGSiCiTqevma~GrpQ~TAVy-~va~~A~q~gvpviADGGiq~~Ghi~KAl-~lGAstVMmG~lLA  387 (503)
T KOG2550|consen  318 RVGMGSGSICITQKVMACGRPQGTAVY-KVAEFANQFGVPCIADGGIQNVGHVVKAL-GLGASTVMMGGLLA  387 (503)
T ss_pred             EeccccCceeeeceeeeccCCcccchh-hHHHHHHhcCCceeecCCcCccchhHhhh-hcCchhheecceee
Confidence            873      22222    222333322 24455667899999999999999999999 69999999995443

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=97.06  E-value=0.03  Score=50.18  Aligned_cols=139  Identities=14%  Similarity=0.204  Sum_probs=90.6

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      .+.++|...|...+.+-.+.+..++|.  +|+==|.=+|             +.-+-.++++++++.++.|+.|=+=.  
T Consensus         4 ~I~pSil~ad~~~l~~el~~l~~g~d~lH~DiMDG~FVP-------------N~tfg~~~i~~ir~~t~~~~DvHLMv--   68 (229)
T PRK09722          4 KISPSLMCMDLLKFKEQIEFLNSKADYFHIDIMDGHFVP-------------NLTLSPFFVSQVKKLASKPLDVHLMV--   68 (229)
T ss_pred             eEEeehhhcCHHHHHHHHHHHHhCCCEEEEecccCccCC-------------CcccCHHHHHHHHhcCCCCeEEEEEe--
Confidence            367788899988888888888667775  4442232222             22233456788888778887776642  


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeeccc-C---------------------------------------------CCCCCc
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKV-A---------------------------------------------DRPRDP  188 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~-~---------------------------------------------~~~~~~  188 (326)
                        .++..+++.+.++|+|.|++|.-.. .                                             .++.|.
T Consensus        69 --~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ  146 (229)
T PRK09722         69 --TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQ  146 (229)
T ss_pred             --cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcch
Confidence              3566788888889999999886521 0                                             011111


Q ss_pred             -C---CHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          189 -A---KWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       189 -~---~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                       .   -++-|+++++.     .++.|-+-|||+ .+.+.++. +.|||.+++|++
T Consensus       147 ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~-~aGad~~V~Gss  199 (229)
T PRK09722        147 PFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLM-EAGADVFIVGTS  199 (229)
T ss_pred             hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHH-HcCCCEEEEChH
Confidence             1   12233444432     235588999997 77888888 699999999975

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.06  E-value=0.018  Score=50.95  Aligned_cols=147  Identities=11%  Similarity=0.159  Sum_probs=86.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c----cccccccccCChHHH---------------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V----SGGMGAALLSKPELI---------------  131 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~----~~~~G~~l~~~p~~~---------------  131 (326)
                      +++.=|.+.++++....++.+.+ |++.||+.+-.|....     +    +---|+....+++.+               
T Consensus        16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~   95 (212)
T PRK05718         16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG   95 (212)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence            56666789999999999999988 7999999876664210     0    011222222222222               


Q ss_pred             --HHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428          132 --HDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN  208 (326)
Q Consensus       132 --~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n  208 (326)
                        .++++..++ .++|+.-.+   .   +.-| +..+.++|++.+-+..-...    +  ...+++.++.-. ++|++..
T Consensus        96 ~~~~vi~~a~~-~~i~~iPG~---~---TptE-i~~a~~~Ga~~vKlFPa~~~----g--g~~~lk~l~~p~p~~~~~pt  161 (212)
T PRK05718         96 LTPPLLKAAQE-GPIPLIPGV---S---TPSE-LMLGMELGLRTFKFFPAEAS----G--GVKMLKALAGPFPDVRFCPT  161 (212)
T ss_pred             CCHHHHHHHHH-cCCCEeCCC---C---CHHH-HHHHHHCCCCEEEEccchhc----c--CHHHHHHHhccCCCCeEEEe
Confidence              222222222 122222111   1   2233 66678899999988542111    1  245677776544 6999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |||. .+++.+.+ ..|+ .+.+|.+.|.++.
T Consensus       162 GGV~-~~ni~~~l-~ag~-v~~vggs~L~~~~  190 (212)
T PRK05718        162 GGIS-PANYRDYL-ALPN-VLCIGGSWMVPKD  190 (212)
T ss_pred             CCCC-HHHHHHHH-hCCC-EEEEEChHhCCcc
Confidence            9996 58999999 5774 4444444444433

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.04  E-value=0.014  Score=51.23  Aligned_cols=144  Identities=14%  Similarity=0.162  Sum_probs=87.2

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c----cccccccccCChHHHHHHH-----------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V----SGGMGAALLSKPELIHDIL-----------  135 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~----~~~~G~~l~~~p~~~~~iv-----------  135 (326)
                      |++.=|.+.++++....++.+.+ |+..|||.+-.|....     +    +---|+.-.-+++.+.+.+           
T Consensus         5 ~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~   84 (201)
T PRK06015          5 PVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG   84 (201)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC
Confidence            56666788999999999999887 8999999987775211     0    0112222223444333322           


Q ss_pred             ------HHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428          136 ------TMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN  208 (326)
Q Consensus       136 ------~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n  208 (326)
                            +..++. ++|+.--.       -+...+..+.++|++.|-+..-..-   .|   ..+++.++.-+ ++|++..
T Consensus        85 ~~~~vi~~a~~~-~i~~iPG~-------~TptEi~~A~~~Ga~~vK~FPa~~~---GG---~~yikal~~plp~~~l~pt  150 (201)
T PRK06015         85 TTQELLAAANDS-DVPLLPGA-------ATPSEVMALREEGYTVLKFFPAEQA---GG---AAFLKALSSPLAGTFFCPT  150 (201)
T ss_pred             CCHHHHHHHHHc-CCCEeCCC-------CCHHHHHHHHHCCCCEEEECCchhh---CC---HHHHHHHHhhCCCCcEEec
Confidence                  222211 22221111       1233345566789999888753211   11   35677777544 7999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      |||. .+.+.+.+ ..|+..+..|+.+.
T Consensus       151 GGV~-~~n~~~~l-~ag~~~~~ggs~l~  176 (201)
T PRK06015        151 GGIS-LKNARDYL-SLPNVVCVGGSWVA  176 (201)
T ss_pred             CCCC-HHHHHHHH-hCCCeEEEEchhhC
Confidence            9996 58899999 46766666666554

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=97.02  E-value=0.0058  Score=57.74  Aligned_cols=94  Identities=21%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEE
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVI  206 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi  206 (326)
                      ++...+.++.++....+...    .+.+ .+..+.++.+.++|++.|.++.....    ...-.+.++++++.. ++||+
T Consensus        69 ~~~~~~~i~~vk~~l~v~~~----~~~~-~~~~~~~~~l~eagv~~I~vd~~~G~----~~~~~~~i~~ik~~~p~v~Vi  139 (325)
T cd00381          69 IEEQAEEVRKVKGRLLVGAA----VGTR-EDDKERAEALVEAGVDVIVIDSAHGH----SVYVIEMIKFIKKKYPNVDVI  139 (325)
T ss_pred             HHHHHHHHHHhccCceEEEe----cCCC-hhHHHHHHHHHhcCCCEEEEECCCCC----cHHHHHHHHHHHHHCCCceEE
Confidence            45556667777644322222    2222 35677888888899999988642211    112357788888876 38888


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      + |.+.|.+++..++ +.|||+|.+|
T Consensus       140 ~-G~v~t~~~A~~l~-~aGaD~I~vg  163 (325)
T cd00381         140 A-GNVVTAEAARDLI-DAGADGVKVG  163 (325)
T ss_pred             E-CCCCCHHHHHHHH-hcCCCEEEEC
Confidence            7 9999999999999 6999999984

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional

Probab=96.99  E-value=0.031  Score=54.42  Aligned_cols=141  Identities=15%  Similarity=0.182  Sum_probs=97.3

Q ss_pred             CCCCHHHHHHHHH-HhhcCCCEEEEccCCCcc---cccccccccc-------------cc---CChHHHHHHHHHHhhcc
Q 020428           83 GTSDAVRALTAAK-MVCKDVAAIDINMGCPKS---FSVSGGMGAA-------------LL---SKPELIHDILTMLKRNL  142 (326)
Q Consensus        83 ~g~~~~~~~~aa~-~~~~~~d~idlN~gcP~~---~~~~~~~G~~-------------l~---~~p~~~~~iv~~v~~~~  142 (326)
                      .+.+++++.+-++ ..+.||..+-+..|-|..   .....+.|..             ..   ..++...+.++++|+.+
T Consensus       124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~  203 (404)
T PRK15072        124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF  203 (404)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence            4556777654444 444599999998764321   0000000000             00   11234467899999987


Q ss_pred             --cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428          143 --DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       143 --~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~  220 (326)
                        ++.+.+-...+|+.+++.++++.+++.++.+|-       + +..+.+++..+++++.+++||.+.=.+.+..++.++
T Consensus       204 G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e-P~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~l  275 (404)
T PRK15072        204 GFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------D-PTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQL  275 (404)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------C-CCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHH
Confidence              456666666679999999999999999887762       2 223457889999999999999988889999999999


Q ss_pred             HHhcCCcEEEe
Q 020428          221 KTAAGASSVMA  231 (326)
Q Consensus       221 l~~~Gad~Vmi  231 (326)
                      ++...+|.+++
T Consensus       276 i~~~a~dii~~  286 (404)
T PRK15072        276 IEEQLIDYIRT  286 (404)
T ss_pred             HHcCCCCEEec
Confidence            97555788876

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=96.99  E-value=0.0091  Score=56.22  Aligned_cols=102  Identities=17%  Similarity=0.284  Sum_probs=69.2

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc-CCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT-GVSALAVHGRKVADRPRDPAKWGEIADIVAA-----  200 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----  200 (326)
                      +++.+.++++..++ .+.-+.|-+.      + .+.++.+.++ |++.|-|.+|.-...   ..|.+...++...     
T Consensus       215 ~~~~L~~l~~~A~~-LGme~LVEVH------~-~~ElerAl~~~ga~iIGINNRdL~Tf---~vDl~~t~~L~~~~~~~~  283 (338)
T PLN02460        215 PDLDIKYMLKICKS-LGMAALIEVH------D-EREMDRVLGIEGVELIGINNRSLETF---EVDISNTKKLLEGERGEQ  283 (338)
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeC------C-HHHHHHHHhcCCCCEEEEeCCCCCcc---eECHHHHHHHhhhccccc
Confidence            34455555555443 3555555553      2 2334444444 888888888865532   3466766677652     


Q ss_pred             c---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          201 L---SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       201 ~---~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +   ++-+|+.+||.|++|+..+. ..|+|+|.||.+++..|.
T Consensus       284 i~~~~~~~VsESGI~t~~Dv~~l~-~~GadAvLVGEsLMr~~d  325 (338)
T PLN02460        284 IREKGIIVVGESGLFTPDDVAYVQ-NAGVKAVLVGESLVKQDD  325 (338)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHH-HCCCCEEEECHHHhCCCC
Confidence            2   34578999999999999999 699999999999998775

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=96.98  E-value=0.0097  Score=56.28  Aligned_cols=110  Identities=26%  Similarity=0.394  Sum_probs=74.0

Q ss_pred             cccccCChHHHHHHHHHHhhccc-CcEEEEecCCC-ChHHHHHHHHHHHHcCCcEEEEeeccc--CCCCCCcCCH----H
Q 020428          121 GAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLK-SSQDTVELARRIEKTGVSALAVHGRKV--ADRPRDPAKW----G  192 (326)
Q Consensus       121 G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~-~~~~~~e~a~~l~~~G~d~i~vh~r~~--~~~~~~~~~~----~  192 (326)
                      +++.+.+|+.. +-++.++.... .|+.+-+.... ...+..++.+..+..++|++.+|--..  ...+.+..++    +
T Consensus        90 ~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~  168 (326)
T cd02811          90 QRAALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLE  168 (326)
T ss_pred             chhhccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHH
Confidence            33455678866 66777777764 89888775521 011344555666667899998885321  1123344466    5


Q ss_pred             HHHHHHHhcCCcEEE--eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          193 EIADIVAALSIPVIA--NGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       193 ~i~~i~~~~~iPVi~--nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .++.+++.+++||+.  +|.-.|.+++..+. +.|+|+|.++
T Consensus       169 ~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~vs  209 (326)
T cd02811         169 RIEELVKALSVPVIVKEVGFGISRETAKRLA-DAGVKAIDVA  209 (326)
T ss_pred             HHHHHHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence            678888888999996  56557899998777 6999999985

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=96.96  E-value=0.05  Score=48.66  Aligned_cols=142  Identities=9%  Similarity=0.093  Sum_probs=87.1

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~  152 (326)
                      .++.++|...|...+.+-.+.+.+ |+|.  +|+==|.=+|+             ..+--.+++.+++  +.|+.|=+=.
T Consensus        13 ~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN-------------itfGp~~i~~i~~--~~~~DvHLMv   77 (228)
T PRK08091         13 QPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF-------------FTVGAIAIKQFPT--HCFKDVHLMV   77 (228)
T ss_pred             CeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-------------cccCHHHHHHhCC--CCCEEEEecc
Confidence            368889999999999998888877 7775  45432321221             1122334555553  5566655432


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccC-----------------------------------------------CCC
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVA-----------------------------------------------DRP  185 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------------------------------------~~~  185 (326)
                          .++.++++.+.++|+|.|++|.-...                                               .++
T Consensus        78 ----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGf  153 (228)
T PRK08091         78 ----RDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRT  153 (228)
T ss_pred             ----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCC
Confidence                24556777777778888877733110                                               011


Q ss_pred             CCc----CCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          186 RDP----AKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       186 ~~~----~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      .|.    .-++-|+++++.     .++.|-.-|||+ .+.+.++. +.|||.+++|+++..+
T Consensus       154 gGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~-~aGaD~~V~GSalF~~  213 (228)
T PRK08091        154 GTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLK-QHQIDWVVSGSALFSQ  213 (228)
T ss_pred             CCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HCCCCEEEEChhhhCC
Confidence            111    113334444432     245678889997 77888888 6999999999986543

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=96.95  E-value=0.0053  Score=59.60  Aligned_cols=77  Identities=18%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             HHHHHHHHcCCcEEEEeeccc---CCCCCCcCCHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          161 ELARRIEKTGVSALAVHGRKV---ADRPRDPAKWGEIADIVAAL---------SIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~---~~~~~~~~~~~~i~~i~~~~---------~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      +.+..+.+.|+|+|.+-..-.   +.....|.-|+.++++++.+         ++||++-||| +.+++.+++ .+|++|
T Consensus       311 eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl-~aGa~G  388 (437)
T PRK12290        311 YELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVW-QCGVSS  388 (437)
T ss_pred             HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHH-HcCCCE
Confidence            345666778999999855422   22234566788887776654         6999999999 689999999 699999


Q ss_pred             EEeccchhcCc
Q 020428          229 VMAARGALWNA  239 (326)
Q Consensus       229 VmiGr~~l~~P  239 (326)
                      |.+=|+++..+
T Consensus       389 VAVVSAI~~A~  399 (437)
T PRK12290        389 LAVVRAITLAE  399 (437)
T ss_pred             EEEehHhhcCC
Confidence            99999987533

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=96.94  E-value=0.033  Score=52.83  Aligned_cols=76  Identities=21%  Similarity=0.209  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCC---c----CCHHHHHHHHHhc-CCcEEEeCCCCCH----------------
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRD---P----AKWGEIADIVAAL-SIPVIANGDVFEY----------------  214 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~----~~~~~i~~i~~~~-~iPVi~nGgI~s~----------------  214 (326)
                      +.+..+.+++.|+|.|.+.-.|..+.|.+   |    .+++.+++|.+.+ ++|++.-||=..+                
T Consensus       175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~  254 (347)
T PRK13399        175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE  254 (347)
T ss_pred             HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence            55556666778999998655555545543   2    6899999999999 7999988876655                


Q ss_pred             ------HHHHHHHHhcCCcEEEeccch
Q 020428          215 ------DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       215 ------~d~~~~l~~~Gad~VmiGr~~  235 (326)
                            +++++++ ..|+.-|=|++-+
T Consensus       255 ~~g~~~e~~~kai-~~GI~KINi~Tdl  280 (347)
T PRK13399        255 TYGVPVEEIQRGI-KHGVRKVNIDTDI  280 (347)
T ss_pred             cCCCCHHHHHHHH-HCCCeEEEeChHH
Confidence                  6667777 4777777666653

>PLN02535 glycolate oxidase

Probab=96.93  E-value=0.013  Score=55.99  Aligned_cols=44  Identities=14%  Similarity=0.386  Sum_probs=38.4

Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ...+|+.++.+++..++||++ .||.+++|+..+. +.|+|+|.+.
T Consensus       208 ~~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~-~~GvD~I~vs  251 (364)
T PLN02535        208 ASLSWKDIEWLRSITNLPILI-KGVLTREDAIKAV-EVGVAGIIVS  251 (364)
T ss_pred             CCCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHH-hcCCCEEEEe
Confidence            356899999999999999876 6689999999999 6999999874

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=96.90  E-value=0.01  Score=54.51  Aligned_cols=89  Identities=11%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             HHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc----CCcEE
Q 020428          133 DILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL----SIPVI  206 (326)
Q Consensus       133 ~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~----~iPVi  206 (326)
                      ..++.+|+..+  .++.+-++       +.+-+..+.++|+|+|.+...          ..+.++++.+.+    ++||.
T Consensus       169 ~~v~~~r~~~~~~~~I~vev~-------t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~  231 (269)
T cd01568         169 EAVKRARAAAPFEKKIEVEVE-------TLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLE  231 (269)
T ss_pred             HHHHHHHHhCCCCCeEEEecC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEE
Confidence            44666776653  44444442       234455556789999988543          235555555544    78999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +.|||+ ++.+.++. .+|+|++.+|.-...-|+
T Consensus       232 asGGIt-~~ni~~~a-~~Gad~Isvgal~~s~~~  263 (269)
T cd01568         232 ASGGIT-LENIRAYA-ETGVDVISTGALTHSAPA  263 (269)
T ss_pred             EECCCC-HHHHHHHH-HcCCCEEEEcHHHcCCCc
Confidence            999996 88899998 699999999755444433

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PLN02979 glycolate oxidase

Probab=96.89  E-value=0.019  Score=54.64  Aligned_cols=45  Identities=16%  Similarity=0.371  Sum_probs=38.7

Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +..+|+-++.+++..++|||. .||.+.+|+.++. +.|+|+|.|+-
T Consensus       208 ~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~-~~Gvd~I~Vsn  252 (366)
T PLN02979        208 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSN  252 (366)
T ss_pred             CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-hcCCCEEEECC
Confidence            356799999999999999887 5578999999999 69999998863

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=96.89  E-value=0.01  Score=55.78  Aligned_cols=100  Identities=11%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             ccC-ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC--CcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428          124 LLS-KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG--VSALAVHGRKVADRPRDPAKWGEIADIVAA  200 (326)
Q Consensus       124 l~~-~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G--~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~  200 (326)
                      +.+ ++|...+.++.++.. .  +.+-+..|.++++ .+.+..+.++|  +|.|.+.--..   + ...-++.++.+++.
T Consensus        63 ~hK~~~E~~~sfvrk~k~~-~--L~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~ahg---~-s~~~~~~i~~i~~~  134 (321)
T TIGR01306        63 MHRFDEESRIPFIKDMQER-G--LFASISVGVKACE-YEFVTQLAEEALTPEYITIDIAHG---H-SNSVINMIKHIKTH  134 (321)
T ss_pred             EecCCHHHHHHHHHhcccc-c--cEEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCccC---c-hHHHHHHHHHHHHh
Confidence            344 677656655555332 2  3444555555544 45566666677  69988743211   1 12236788999999


Q ss_pred             cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          201 LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       201 ~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+.|.+..|+|.|+++++.++ +.|||+|.+|
T Consensus       135 ~p~~~vi~GnV~t~e~a~~l~-~aGad~I~V~  165 (321)
T TIGR01306       135 LPDSFVIAGNVGTPEAVRELE-NAGADATKVG  165 (321)
T ss_pred             CCCCEEEEecCCCHHHHHHHH-HcCcCEEEEC
Confidence            999999999999999999999 6999999887

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=96.88  E-value=0.0054  Score=53.61  Aligned_cols=149  Identities=15%  Similarity=0.225  Sum_probs=86.5

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c---------------------cccccccccCChH
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V---------------------SGGMGAALLSKPE  129 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~---------------------~~~~G~~l~~~p~  129 (326)
                      +++.=|.+.++++..+.++.+.+ |+..||+.+-.|....     +                     .-..|+.++--|-
T Consensus         9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~   88 (196)
T PF01081_consen    9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG   88 (196)
T ss_dssp             SEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC
Confidence            56777788999999999998877 8999999987664210     0                     0112222222222


Q ss_pred             HHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428          130 LIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN  208 (326)
Q Consensus       130 ~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n  208 (326)
                      +-.++++..++. ++|+.=-+   .    +...+..+.++|++.+-+..-..-    |  -..+++.++.-. ++|++..
T Consensus        89 ~~~~v~~~~~~~-~i~~iPG~---~----TptEi~~A~~~G~~~vK~FPA~~~----G--G~~~ik~l~~p~p~~~~~pt  154 (196)
T PF01081_consen   89 FDPEVIEYAREY-GIPYIPGV---M----TPTEIMQALEAGADIVKLFPAGAL----G--GPSYIKALRGPFPDLPFMPT  154 (196)
T ss_dssp             --HHHHHHHHHH-TSEEEEEE---S----SHHHHHHHHHTT-SEEEETTTTTT----T--HHHHHHHHHTTTTT-EEEEB
T ss_pred             CCHHHHHHHHHc-CCcccCCc---C----CHHHHHHHHHCCCCEEEEecchhc----C--cHHHHHHHhccCCCCeEEEc
Confidence            223333333222 33333222   1    222344455688888877644221    1  146777777643 7999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      |||. .+.+.+.+ ..|+.+|.+|+.+..+.++
T Consensus       155 GGV~-~~N~~~~l-~ag~~~vg~Gs~L~~~~~i  185 (196)
T PF01081_consen  155 GGVN-PDNLAEYL-KAGAVAVGGGSWLFPKDLI  185 (196)
T ss_dssp             SS---TTTHHHHH-TSTTBSEEEESGGGSHHHH
T ss_pred             CCCC-HHHHHHHH-hCCCEEEEECchhcCHHHH
Confidence            9997 58899999 6999999999986665544

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=96.85  E-value=0.0037  Score=59.31  Aligned_cols=71  Identities=25%  Similarity=0.404  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +..+.++.|.++|+|.|+|..-...    ...-.+.++++++..+ +||| .|+|.|++.++.++ ..|||+|-||=|
T Consensus       108 ~~~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~-~aGad~vkVGiG  179 (352)
T PF00478_consen  108 DDFERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLI-DAGADAVKVGIG  179 (352)
T ss_dssp             CHHHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHH-HTT-SEEEESSS
T ss_pred             HHHHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHH-HcCCCEEEEecc
Confidence            4577888899999999999643211    1112567889988875 8887 58899999999999 699999999954

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=96.85  E-value=0.024  Score=54.66  Aligned_cols=102  Identities=21%  Similarity=0.200  Sum_probs=70.6

Q ss_pred             HHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC---CCCC---cCCHHHH----HHHHHhcC
Q 020428          134 ILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD---RPRD---PAKWGEI----ADIVAALS  202 (326)
Q Consensus       134 iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~---~~~~---~~~~~~i----~~i~~~~~  202 (326)
                      .+..+++.. ++||.+-+--+.+.++..++++.++++|+|+|.+.=.....   +..+   .-+.+.+    +.+++.++
T Consensus       103 ~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~  182 (385)
T PLN02495        103 EFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT  182 (385)
T ss_pred             HHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc
Confidence            345565555 67999887545788999999999999999999974221111   1001   1244555    44566678


Q ss_pred             CcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          203 IPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       203 iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +||+  ..-++.+..++.+.+.+.|||||.+---+
T Consensus       183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~  217 (385)
T PLN02495        183 VPVWAKMTPNITDITQPARVALKSGCEGVAAINTI  217 (385)
T ss_pred             CceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence            9987  56788888888887778999999875433

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=96.83  E-value=0.027  Score=53.91  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE-Ee-ecccCCCC-CCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA-VH-GRKVADRP-RDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~-vh-~r~~~~~~-~~~~~~~~i~~  196 (326)
                      -||..+.+.++    ++++. ..+.||.+|.....+.++....+..+.+.|..-|+ +| |-+.-..+ ....|+..+..
T Consensus       207 I~s~~~~n~~L----L~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~  281 (360)
T PRK12595        207 IGARNMQNFEL----LKAAG-RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPI  281 (360)
T ss_pred             ECcccccCHHH----HHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHH
Confidence            35666777654    44443 35899999998777888999999999999986555 55 44322211 34468999999


Q ss_pred             HHHhcCCcEEEeCCCCC----HH--HHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428          197 IVAALSIPVIANGDVFE----YD--DFQRIKTAAGASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       197 i~~~~~iPVi~nGgI~s----~~--d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~  245 (326)
                      +++..++||+++-+=..    .-  -+...+ ..||||++|=+=.  ||....-.
T Consensus       282 lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAv-a~GAdg~~iE~H~--dp~~a~~D  333 (360)
T PRK12595        282 LKQETHLPVMVDVTHSTGRRDLLLPTAKAAL-AIGADGVMAEVHP--DPAVALSD  333 (360)
T ss_pred             HHHHhCCCEEEeCCCCCcchhhHHHHHHHHH-HcCCCeEEEEecC--CCCCCCCc
Confidence            99988999999433222    11  334455 5899999999877  77765443

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.045  Score=49.60  Aligned_cols=139  Identities=16%  Similarity=0.175  Sum_probs=83.7

Q ss_pred             CCcEEEEECCCC---HHHHH----HHHHH-hhcCCC--EEEEccCCCccccccccccccccCChHHHHHHHHHHhhc--c
Q 020428           75 RNHVVFQMGTSD---AVRAL----TAAKM-VCKDVA--AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN--L  142 (326)
Q Consensus        75 ~~p~~vQl~g~~---~~~~~----~aa~~-~~~~~d--~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~--~  142 (326)
                      +.|++++|.+++   ++.+-    ...+- +.-|+|  ++-||.|+...              .+.+.++.+.+..+  .
T Consensus        77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e--------------~~~i~~~~~v~~~a~~~  142 (265)
T COG1830          77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE--------------REMIENISQVVEDAHEL  142 (265)
T ss_pred             CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch--------------HHHHHHHHHHHHHHHHc
Confidence            357888887662   21111    11111 222666  56778776544              44555544443322  3


Q ss_pred             cCcEEEEecC-CC--------ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC
Q 020428          143 DVPVTCKIRL-LK--------SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE  213 (326)
Q Consensus       143 ~~pv~vK~r~-g~--------~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s  213 (326)
                      +.|+.+=+=. |.        +.+.+...++...+.|+|.|-+-       |  +.+.+.++++.+.+.+||+..||=.+
T Consensus       143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-------y--tg~~e~F~~vv~~~~vpVviaGG~k~  213 (265)
T COG1830         143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-------Y--TGDPESFRRVVAACGVPVVIAGGPKT  213 (265)
T ss_pred             CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-------C--CCChHHHHHHHHhCCCCEEEeCCCCC
Confidence            8887662211 21        22345555677889999998542       2  23447888999989999999999776


Q ss_pred             --HHHHHH----HHHhcCCcEEEeccchhc
Q 020428          214 --YDDFQR----IKTAAGASSVMAARGALW  237 (326)
Q Consensus       214 --~~d~~~----~l~~~Gad~VmiGr~~l~  237 (326)
                        .+++.+    ++ +.|+.|+.+||-++.
T Consensus       214 ~~~~~~l~~~~~ai-~aGa~G~~~GRNifQ  242 (265)
T COG1830         214 ETEREFLEMVTAAI-EAGAMGVAVGRNIFQ  242 (265)
T ss_pred             CChHHHHHHHHHHH-HccCcchhhhhhhhc
Confidence              344443    35 469999999997443

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.82  E-value=0.022  Score=52.65  Aligned_cols=102  Identities=25%  Similarity=0.364  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhhc-ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-----Cc-CCHHHHHHHHHhc
Q 020428          129 ELIHDILTMLKRN-LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-----DP-AKWGEIADIVAAL  201 (326)
Q Consensus       129 ~~~~~iv~~v~~~-~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-----~~-~~~~~i~~i~~~~  201 (326)
                      +...+-+...++. .+.|+.+-++ +.+.++..+.++.++++|+|+|.++.........     .+ .-.+.++.+++.+
T Consensus        83 ~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~  161 (289)
T cd02810          83 DVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV  161 (289)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence            3344344444444 4788888876 3567889999999999999999998654332111     11 1135577778778


Q ss_pred             CCcEEE--eCCCCCHH---HHHHHHHhcCCcEEEec
Q 020428          202 SIPVIA--NGDVFEYD---DFQRIKTAAGASSVMAA  232 (326)
Q Consensus       202 ~iPVi~--nGgI~s~~---d~~~~l~~~Gad~VmiG  232 (326)
                      ++||++  +++ .+.+   ++.+.+++.|+|++.+-
T Consensus       162 ~~pv~vKl~~~-~~~~~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         162 DIPLLVKLSPY-FDLEDIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             CCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEE
Confidence            899874  344 4433   33444557899999985

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=96.82  E-value=0.037  Score=51.77  Aligned_cols=124  Identities=15%  Similarity=0.206  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+-++.+.+ |+++|=++.+          .|-...-.++.-.++++.+.+.+  .+||.+-+. . +..++++
T Consensus        25 iD~~~l~~li~~l~~~Gv~Gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~   92 (303)
T PRK03620         25 FDEAAYREHLEWLAPYGAAALFAAGG----------TGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIE   92 (303)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHH
Confidence            367778888887766 9999988742          44444455666677777776665  588888774 3 7889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-CC-CCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-GD-VFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-Gg-I~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-.-. ..+...-.++++.+.+.+++||+ +| .| --+++.+.++.
T Consensus        93 ~~~~a~~~Gadav~~~pP~y~-~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~  154 (303)
T PRK03620         93 YAQAAERAGADGILLLPPYLT-EAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA  154 (303)
T ss_pred             HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence            999999999999988542111 11111224556777777888865 43 22 23566666665

>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate

Probab=96.82  E-value=0.039  Score=53.61  Aligned_cols=121  Identities=13%  Similarity=0.124  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHhh-c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVC-K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~-~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.++.+. + ||..+-|..|-               .+++.-.+.++++|+++ ++.+.+-...+|+.+++.++
T Consensus       168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~  232 (395)
T cd03323         168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL  232 (395)
T ss_pred             CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence            6777776665543 3 99999886542               23455567788888877 34555655557999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+++ ++.++       ++..  + +++..+++++.+++||.+.=.+.+.+++.++++...+|.+++-
T Consensus       233 ~~~l~~-~l~~i-------EeP~--~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d  291 (395)
T cd03323         233 AKELEG-VLAYL-------EDPC--G-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLAD  291 (395)
T ss_pred             HHhcCc-CCCEE-------ECCC--C-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeec
Confidence            999998 87765       2222  2 7889999999999999987788999999999965557877543

GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=96.81  E-value=0.016  Score=49.95  Aligned_cols=113  Identities=16%  Similarity=0.193  Sum_probs=69.6

Q ss_pred             HHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE--EEecCCCC---hHHHHHHHHH
Q 020428           92 TAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT--CKIRLLKS---SQDTVELARR  165 (326)
Q Consensus        92 ~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~--vK~r~g~~---~~~~~e~a~~  165 (326)
                      +.|+.+.. |+.+|-+|.                   +    +-++++++.+++||.  +|-....+   .--+.+-++.
T Consensus         3 ~mA~Aa~~gGA~giR~~~-------------------~----~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~   59 (192)
T PF04131_consen    3 RMAKAAEEGGAVGIRANG-------------------V----EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDA   59 (192)
T ss_dssp             HHHHHHHHCT-SEEEEES-------------------H----HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHH
T ss_pred             HHHHHHHHCCceEEEcCC-------------------H----HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHH
Confidence            34444445 788888872                   1    337888999999986  34322211   1236777889


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.++|+|-|.+.+-.+. ++  ..-.++++++++..   +..-.||.|.|++..+. +.|+|.|  |+-+.
T Consensus        60 l~~aGadIIAlDaT~R~-Rp--~~l~~li~~i~~~~---~l~MADist~ee~~~A~-~~G~D~I--~TTLs  121 (192)
T PF04131_consen   60 LAEAGADIIALDATDRP-RP--ETLEELIREIKEKY---QLVMADISTLEEAINAA-ELGFDII--GTTLS  121 (192)
T ss_dssp             HHHCT-SEEEEE-SSSS--S--S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHH-HTT-SEE--E-TTT
T ss_pred             HHHcCCCEEEEecCCCC-CC--cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHH-HcCCCEE--Ecccc
Confidence            99999999998764333 22  33467888998876   55567999999999999 6999975  44444

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=96.81  E-value=0.04  Score=51.71  Aligned_cols=125  Identities=12%  Similarity=0.043  Sum_probs=85.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+.. .+..++++
T Consensus        26 iD~~~l~~lv~~li~~Gv~Gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~   94 (309)
T cd00952          26 VDLDETARLVERLIAAGVDGILTMG----------TFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIA   94 (309)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------ccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHH
Confidence            477888888887765 999998874          345555556777778888777766  4888877742 46789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..=.- ...+...-.++++.|.+.+ ++||+ +     .|--.+++.+.++.
T Consensus        95 ~a~~A~~~Gad~vlv~~P~y-~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~  160 (309)
T cd00952          95 RTRALLDLGADGTMLGRPMW-LPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA  160 (309)
T ss_pred             HHHHHHHhCCCEEEECCCcC-CCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence            99999999999998864311 0111122356677888888 58876 3     23233566666554

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=96.80  E-value=0.03  Score=50.29  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~~  155 (326)
                      ++++-+=-.+.++..+.++.+....+.++++.+.=.      .+|          .++++++++. ..+++.+|+-  +-
T Consensus         4 ~lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~------~~G----------~~~i~~l~~~~~~i~~D~Kl~--Di   65 (230)
T PRK00230          4 RLIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFT------AGG----------PQFVRELKQRGFKVFLDLKLH--DI   65 (230)
T ss_pred             CeEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHH------hcC----------HHHHHHHHhcCCCEEEEeehh--hc
Confidence            455554333444444444444334678888653211      111          2456777665 3455666662  22


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      ..+....++.+.++|+|++++|+-
T Consensus        66 ~~t~~~~i~~~~~~gad~itvH~~   89 (230)
T PRK00230         66 PNTVAKAVRALAKLGVDMVNVHAS   89 (230)
T ss_pred             cccHHHHHHHHHHcCCCEEEEccc
Confidence            334455677788999999999964

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=96.80  E-value=0.14  Score=46.83  Aligned_cols=148  Identities=14%  Similarity=0.117  Sum_probs=98.6

Q ss_pred             ccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428           71 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      ..+.+-|++--+  .++.+...+++.    +|.+.|              |+.++++.++    ++++.+ ++.||.+|=
T Consensus        83 k~~~GlpvvTeV--~~~~~~~~~ae~----vDilQI--------------gAr~~rntdL----L~a~~~-t~kpV~lKr  137 (281)
T PRK12457         83 KARFGVPVITDV--HEVEQAAPVAEV----ADVLQV--------------PAFLARQTDL----VVAIAK-TGKPVNIKK  137 (281)
T ss_pred             HHHHCCceEEEe--CCHHHHHHHhhh----CeEEee--------------CchhhchHHH----HHHHhc-cCCeEEecC
Confidence            344566777655  355555554443    577776              4566777644    455543 589999999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-CcCCHHHHHHHHHh-cCCcEEEe---------------CCCCC
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAA-LSIPVIAN---------------GDVFE  213 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~i~~~-~~iPVi~n---------------GgI~s  213 (326)
                      ....++++..-.++.+.+.|...|.+.-|-..-.|. -..|...+..+++. ..+|||.-               ||-+.
T Consensus       138 Gqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re  217 (281)
T PRK12457        138 PQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRR  217 (281)
T ss_pred             CCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHH
Confidence            877888899999999999999999987775443333 45688888888885 68999842               44332


Q ss_pred             --HHHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428          214 --YDDFQRIKTAAGASSVMAARGALWNASIFSSQG  246 (326)
Q Consensus       214 --~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~  246 (326)
                        +.-+...+ ..||||+|+=.  --||.-.-.++
T Consensus       218 ~v~~larAAv-A~GaDGl~iEv--HpdP~~AlsDg  249 (281)
T PRK12457        218 QVLDLARAGM-AVGLAGLFLEA--HPDPDRARCDG  249 (281)
T ss_pred             HHHHHHHHHH-HhCCCEEEEEe--cCCccccCCCc
Confidence              12234445 58999999873  33665544443

>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART)

Probab=96.80  E-value=0.0093  Score=54.01  Aligned_cols=148  Identities=14%  Similarity=0.155  Sum_probs=72.7

Q ss_pred             CcEEEEECCCCHH-HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCC---hHHHHHHHHHHhhcccCcEEEEe
Q 020428           76 NHVVFQMGTSDAV-RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSK---PELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~g~~~~-~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~---p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      .|++.-+++.||- ++....+.+++ ||.+|. |+  |..-...+.+...|...   .+.=.++++..++. ++ +++-.
T Consensus        82 tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~-gl-~T~~y  156 (268)
T PF09370_consen   82 TPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK-GL-FTTAY  156 (268)
T ss_dssp             S-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT-T--EE--E
T ss_pred             CCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-CC-eeeee
Confidence            6999999999984 55666666666 999885 54  65433333333333211   11122333333332 21 11111


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeec-ccCCCCC--CcCCH----HHHHHHHHh---c--C-CcEEEeCCCCCHHHH
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRPR--DPAKW----GEIADIVAA---L--S-IPVIANGDVFEYDDF  217 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r-~~~~~~~--~~~~~----~~i~~i~~~---~--~-iPVi~nGgI~s~~d~  217 (326)
                      -  .+    .+-|+...++|+|.|++|-. |..+...  ....+    +.+.++.+.   +  + +-++..|-|.+++|+
T Consensus       157 v--f~----~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~  230 (268)
T PF09370_consen  157 V--FN----EEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDA  230 (268)
T ss_dssp             E---S----HHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHH
T ss_pred             e--cC----HHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence            0  22    34466677999999999944 4433211  11122    233444443   2  2 345677889999999


Q ss_pred             HHHHHhcC-CcEEEeccc
Q 020428          218 QRIKTAAG-ASSVMAARG  234 (326)
Q Consensus       218 ~~~l~~~G-ad~VmiGr~  234 (326)
                      +.+++++. ++|..-|+.
T Consensus       231 ~~~l~~t~~~~Gf~G~Ss  248 (268)
T PF09370_consen  231 QYVLRNTKGIHGFIGASS  248 (268)
T ss_dssp             HHHHHH-TTEEEEEESTT
T ss_pred             HHHHhcCCCCCEEecccc
Confidence            99998887 999987765

Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=96.79  E-value=0.024  Score=53.90  Aligned_cols=88  Identities=19%  Similarity=0.282  Sum_probs=68.3

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc-------C-----C-------------------------CC
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV-------A-----D-------------------------RP  185 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~-------~-----~-------------------------~~  185 (326)
                      +.|+.+-+-...+...+.++.+.++++|+++|.+|--+.       +     +                         ..
T Consensus       117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  196 (344)
T cd02922         117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI  196 (344)
T ss_pred             CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence            357777666556777889999999999999999872211       0     0                         01


Q ss_pred             CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       186 ~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+...|+.++++++..++||+.- ||.+.+|+..+. ..|+|+|.+.
T Consensus       197 ~~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~vs  241 (344)
T cd02922         197 DPTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAA-EYGVDGIVLS  241 (344)
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHH-HcCCCEEEEE
Confidence            12357999999999999999887 678999999998 6999999876

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=96.78  E-value=0.018  Score=53.55  Aligned_cols=96  Identities=22%  Similarity=0.286  Sum_probs=65.1

Q ss_pred             HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC-----CCC-c-CCHHHHHHHHHhcCCcEEE
Q 020428          135 LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR-----PRD-P-AKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       135 v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~-----~~~-~-~~~~~i~~i~~~~~iPVi~  207 (326)
                      +...++..+.|+.+-++ +.+.++..+.++.++++|+|+|.+|-......     +.. + .-.+.++.+++.+++||+.
T Consensus        81 ~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v  159 (296)
T cd04740          81 LLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV  159 (296)
T ss_pred             HHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence            33344445789998886 45678899999999999999999985433211     111 1 1235667777777899883


Q ss_pred             --eCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          208 --NGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       208 --nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                        +.++.+..++.+.+++.|+|++.+
T Consensus       160 Kl~~~~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         160 KLTPNVTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             EeCCCchhHHHHHHHHHHcCCCEEEE
Confidence              455555556555566799999865

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase

Probab=96.77  E-value=0.058  Score=50.90  Aligned_cols=128  Identities=9%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~  154 (326)
                      |+-..++..+++++.+.++... .||..+-+-.| |                 +.-.+.++++++.+ ++.+.+-..-+|
T Consensus       123 ~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-----------------~~d~~~v~~vr~~~~~~~l~vDaN~~~  184 (324)
T TIGR01928       123 PAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-----------------QIMHQLVKLRRLRFPQIPLVIDANESY  184 (324)
T ss_pred             EEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-----------------chhHHHHHHHHHhCCCCcEEEECCCCC
Confidence            3433345567777766666544 49988887543 1                 11235677777766 233444444458


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +..+. ..++.+++.++.+|-        .+..+-+++..+++++.+++||.+.=.+.+..++.++++...+|.+++
T Consensus       185 ~~~~a-~~~~~l~~~~~~~iE--------eP~~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~  252 (324)
T TIGR01928       185 DLQDF-PRLKELDRYQLLYIE--------EPFKIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINI  252 (324)
T ss_pred             CHHHH-HHHHHHhhCCCcEEE--------CCCChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence            87664 668999998887762        112334788899999999999999888999999999997666788764

This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.

>PRK02714 O-succinylbenzoate synthase; Provisional

Probab=96.77  E-value=0.071  Score=50.24  Aligned_cols=122  Identities=11%  Similarity=0.127  Sum_probs=87.2

Q ss_pred             HHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHH
Q 020428           87 AVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        87 ~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      ++.+.+.++. ...|+..+-+-.|-               .+++.-.+.++++++.+  +..+.+-..-+|+.+++.+++
T Consensus       119 ~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~  183 (320)
T PRK02714        119 GEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWL  183 (320)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence            3555545544 44588888775431               23555567788888876  456666666679999999999


Q ss_pred             HHHHH---cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          164 RRIEK---TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       164 ~~l~~---~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +.+++   .++.+|       +| +..+.+++..+++++.+++||.+.=.+.+..|+.++++...+|.|++
T Consensus       184 ~~l~~l~~~~i~~i-------Eq-P~~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i  246 (320)
T PRK02714        184 QLCDRRLSGKIEFI-------EQ-PLPPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVI  246 (320)
T ss_pred             HHHhhccCCCccEE-------EC-CCCcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence            99988   566665       22 22344788899999999999999999999999999995444565544

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=96.74  E-value=0.048  Score=50.77  Aligned_cols=125  Identities=16%  Similarity=0.243  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+.  .+..++++
T Consensus        23 iD~~~l~~li~~l~~~Gv~gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~   90 (296)
T TIGR03249        23 FDEAAYRENIEWLLGYGLEALFAAG----------GTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIE   90 (296)
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEECC----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHH
Confidence            477888888887766 999998864          244444455666677777766655  578888875  36889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee--CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN--GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-.-. ..+...-.+++++|.+.+++||+ +|  |---+++.+.++.+
T Consensus        91 ~a~~a~~~Gadav~~~pP~y~-~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~  153 (296)
T TIGR03249        91 IARLAEKAGADGYLLLPPYLI-NGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD  153 (296)
T ss_pred             HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence            999999999999988542111 11112235567788888889965 54  32346777777764

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=96.74  E-value=0.12  Score=46.02  Aligned_cols=142  Identities=14%  Similarity=0.130  Sum_probs=80.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~~  155 (326)
                      ++++=|=-.+.++..+.++.+.+..+++++..  |.            +.  ..=.++++++++. .+.+|.+-+.+. |
T Consensus         5 ~l~vALD~~~~~~a~~l~~~l~~~v~~~kvG~--~l------------~~--~~G~~~i~~lk~~~~~~~v~~DLK~~-D   67 (216)
T PRK13306          5 LLQIALDNQDLESAIEDAKKVAEEVDIIEVGT--IL------------LL--AEGMKAVRVLRALYPDKIIVADTKIA-D   67 (216)
T ss_pred             cEEEEecCCCHHHHHHHHHHccccCCEEEECh--HH------------HH--HhCHHHHHHHHHHCCCCEEEEEEeec-C
Confidence            45555544566677777777766677888743  21            10  1112457777776 377777766553 2


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCC----------CCC--------------------------------------C
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVAD----------RPR--------------------------------------D  187 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~----------~~~--------------------------------------~  187 (326)
                      ..+++  ++.+.++|+|.++||+.....          .+.                                      |
T Consensus        68 i~~~v--~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G  145 (216)
T PRK13306         68 AGKIL--AKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAG  145 (216)
T ss_pred             CcHHH--HHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcC
Confidence            22333  333779999999999743210          000                                      0


Q ss_pred             c-CCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          188 P-AKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       188 ~-~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      . ..-..+.++++..  +..+...|||+ ++.+.... +.|+|.+++||++...+
T Consensus       146 ~v~s~~~~~~ir~~~~~~~~i~V~gGI~-~~~~~~~~-~~~ad~~VvGr~I~~a~  198 (216)
T PRK13306        146 VAWGEKDLNKVKKLSDMGFKVSVTGGLV-VEDLKLFK-GIPVKTFIAGRAIRGAA  198 (216)
T ss_pred             CCCCHHHHHHHHHHhcCCCeEEEcCCCC-HhhHHHHh-cCCCCEEEECCcccCCC
Confidence            0 0011223333332  33478899997 44444444 67999999999965443

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=96.74  E-value=0.028  Score=53.81  Aligned_cols=45  Identities=16%  Similarity=0.371  Sum_probs=38.8

Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ...+|+-++.+++..++|||. .||.+++|++.+. +.|+|+|.|+-
T Consensus       209 ~~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~-~~Gvd~I~Vsn  253 (367)
T PLN02493        209 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSN  253 (367)
T ss_pred             CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-HcCCCEEEECC
Confidence            456899999999999999887 5578999999999 69999998863

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=96.72  E-value=0.037  Score=51.11  Aligned_cols=126  Identities=18%  Similarity=0.234  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+-++.+.+ |++++=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+.. .+.+++++
T Consensus        18 iD~~~~~~~i~~l~~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~   86 (284)
T cd00950          18 VDFDALERLIEFQIENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIE   86 (284)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHH
Confidence            467788888887766 999998873          234444445666677777776666  4677766642 46789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l~  222 (326)
                      +++.++++|+|++.+..-.-. ..+...-++++++|.+.+++||+ +     .|--.|++.+.++.+
T Consensus        87 ~a~~a~~~G~d~v~~~~P~~~-~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~  152 (284)
T cd00950          87 LTKRAEKAGADAALVVTPYYN-KPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE  152 (284)
T ss_pred             HHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence            999999999999988743211 11112235566788888889987 3     465667888888874

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=96.72  E-value=0.12  Score=46.70  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             ccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428           71 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      ..+.+-|++--+  .++++...+++.    +|.+.|              |+.++++.++    ++++.+ ++.||.+|=
T Consensus        69 k~~~glpvvTeV--~~~~~~~~vae~----vDilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKr  123 (258)
T TIGR01362        69 KEEFGVPILTDV--HESSQCEPVAEV----VDIIQI--------------PAFLCRQTDL----LVAAAK-TGRIVNVKK  123 (258)
T ss_pred             HHHhCCceEEEe--CCHHHHHHHHhh----CcEEEe--------------CchhcchHHH----HHHHhc-cCCeEEecC
Confidence            345566777665  355555555543    577776              4566777644    555543 589999999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-cCCHHHHHHHHHhcCCcEEEe---------------CCCCCH
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-PAKWGEIADIVAALSIPVIAN---------------GDVFEY  214 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~~~~~~i~~i~~~~~iPVi~n---------------GgI~s~  214 (326)
                      ....++++..-.++.+...|-+-|.+.-|-..-.|.. ..|+..+..+++. ..|||.-               ||.+..
T Consensus       124 G~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~  202 (258)
T TIGR01362       124 GQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGLGGASGGLREF  202 (258)
T ss_pred             CCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhc-CCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence            8888889999999999999999998876644323332 5688888888775 8999852               444331


Q ss_pred             --HHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428          215 --DDFQRIKTAAGASSVMAARGALWNASIFSSQG  246 (326)
Q Consensus       215 --~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~  246 (326)
                        .-++..+ ..|+||+|+=.  --||.-.-.++
T Consensus       203 v~~la~AAv-A~GaDGl~iEv--HpdP~~AlsDg  233 (258)
T TIGR01362       203 VPTLARAAV-AVGIDGLFMET--HPDPKNAKSDG  233 (258)
T ss_pred             HHHHHHHHH-HhCCCEEEEEe--CCCccccCCCc
Confidence              2234455 58999999863  33665544433

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.72  E-value=0.042  Score=48.76  Aligned_cols=121  Identities=13%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh-----HH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS-----QD  158 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~-----~~  158 (326)
                      .++....++++.+.+ |...+++  ++                 +    +.++.+++.+++|+..-.+.+.+.     ..
T Consensus        24 ~~~~~i~~~a~~~~~~G~~~~~~--~~-----------------~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~   80 (219)
T cd04729          24 HSPEIMAAMALAAVQGGAVGIRA--NG-----------------V----EDIRAIRARVDLPIIGLIKRDYPDSEVYITP   80 (219)
T ss_pred             CcHHHHHHHHHHHHHCCCeEEEc--CC-----------------H----HHHHHHHHhCCCCEEEEEecCCCCCCceeCC
Confidence            356778888887766 7777764  22                 2    335666666789986533332211     12


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ..+.++.+.++|+|.|.+...... ...+....++++++++..++|++.  ++.|.+++..+. ..|+|.+.+.
T Consensus        81 ~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~-~~G~d~i~~~  150 (219)
T cd04729          81 TIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAA-KLGFDIIGTT  150 (219)
T ss_pred             CHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHH-HcCCCEEEcc
Confidence            345789999999998887543221 111123456777777665688776  688999998888 6899998764

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=96.71  E-value=0.088  Score=46.39  Aligned_cols=179  Identities=18%  Similarity=0.202  Sum_probs=107.8

Q ss_pred             cCCCCHHHHHHHHHcCCC---eEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC-CHH
Q 020428           13 VRVGTLPFRLLAAQYGAD---ITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS-DAV   88 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~---l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~-~~~   88 (326)
                      +|.|.+.=..++.++|++   +++.+- |++....      .           ..+.+....+.  .+ .|-++.+ +++
T Consensus         7 CGlt~~eda~~a~~~gad~iG~If~~~-SpR~Vs~------~-----------~a~~i~~~v~~--~~-~VgVf~n~~~~   65 (208)
T COG0135           7 CGLTRLEDAKAAAKAGADYIGFIFVPK-SPRYVSP------E-----------QAREIASAVPK--VK-VVGVFVNESIE   65 (208)
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEEEcCC-CCCcCCH------H-----------HHHHHHHhCCC--CC-EEEEECCCCHH
Confidence            578888878888888875   444331 2221110      0           00001222222  12 3334444 455


Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEK  168 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~  168 (326)
                      +..+.+..+  +.|.|.||.-                .++++    ++.++...++||+--++.....+   ........
T Consensus        66 ~i~~i~~~~--~ld~VQlHG~----------------e~~~~----~~~l~~~~~~~v~kai~v~~~~~---~~~~~~~~  120 (208)
T COG0135          66 EILEIAEEL--GLDAVQLHGD----------------EDPEY----IDQLKEELGVPVIKAISVSEEGD---LELAAREE  120 (208)
T ss_pred             HHHHHHHhc--CCCEEEECCC----------------CCHHH----HHHHHhhcCCceEEEEEeCCccc---hhhhhhcc
Confidence            555554433  6799999852                34544    44555554677766565432211   22334445


Q ss_pred             cCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          169 TGVSALAVHGRKVA--DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       169 ~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      .-+|.+.+......  ++...+.||+.+...  ....|++..|||+ ++.+.++++.....+|=+.+|.=.+|.
T Consensus       121 ~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~pG  191 (208)
T COG0135         121 GPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSPG  191 (208)
T ss_pred             CCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCCC
Confidence            56899988876543  333456799998876  4678999999995 999999995444499999999888883

>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids

Probab=96.70  E-value=0.073  Score=50.75  Aligned_cols=129  Identities=13%  Similarity=0.222  Sum_probs=86.5

Q ss_pred             cEEEEECCCCH-HHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCC
Q 020428           77 HVVFQMGTSDA-VRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~-~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g  153 (326)
                      |+-..+...++ +++.+.++.+. +||..+-+..+                  ++.-.+.++++|+.++ +.+.+-..-+
T Consensus       127 ~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~------------------~~~d~~~l~~vr~~~g~~~l~lDaN~~  188 (354)
T cd03317         127 PVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK------------------PGWDVEPLKAVRERFPDIPLMADANSA  188 (354)
T ss_pred             EeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC------------------hHHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            34333433333 66665555544 49998888653                  1223456778877763 3333333336


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+..++. +++.+++.++.+|-       + +..+.|++..+++++.+++||.+.=.+.|.+++..+++...+|.+++-
T Consensus       189 ~~~~~a~-~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik  258 (354)
T cd03317         189 YTLADIP-LLKRLDEYGLLMIE-------Q-PLAADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIK  258 (354)
T ss_pred             CCHHHHH-HHHHhhcCCccEEE-------C-CCChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEec
Confidence            8887764 78889988877762       2 223457888899999999999988889999999999965557888664

NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=96.70  E-value=0.02  Score=54.66  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +..+-...+.++|+|.|++...   |.++ ....+.|+.|++...-.=+..|++-|.+.++.++ ..|||++=||-|
T Consensus       251 ~dK~rl~ll~~aGvdvviLDSS---qGnS-~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI-~aGaDgLrVGMG  322 (503)
T KOG2550|consen  251 DDKERLDLLVQAGVDVVILDSS---QGNS-IYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLI-AAGADGLRVGMG  322 (503)
T ss_pred             chhHHHHHhhhcCCcEEEEecC---CCcc-hhHHHHHHHHHhhCCCceeeccceeeHHHHHHHH-HccCceeEeccc
Confidence            4456677888999999998744   2222 3357889999998754444558899999999999 699999888755

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=96.69  E-value=0.033  Score=52.74  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=76.5

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec---ccCCCCCCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR---KVADRPRDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r---~~~~~~~~~~~~~~i~~  196 (326)
                      -|+..+.+.+++.++     ...+.||.+|.....+.++....++.+...|-.-+++--|   +-........|+..+..
T Consensus       182 IgAr~~~N~~LL~~v-----a~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~  256 (335)
T PRK08673        182 IGARNMQNFDLLKEV-----GKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPV  256 (335)
T ss_pred             ECcccccCHHHHHHH-----HcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHH
Confidence            455566666554443     2358999999988778888888999999999876654333   33222234568888999


Q ss_pred             HHHhcCCcEEEe----CCCCC--HHHHHHHHHhcCCcEEEeccchh
Q 020428          197 IVAALSIPVIAN----GDVFE--YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       197 i~~~~~iPVi~n----GgI~s--~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +++....|||+.    +|.+.  +..+...+ ..||||++|=.=.=
T Consensus       257 lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~H~~  301 (335)
T PRK08673        257 IKKLTHLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEVHPD  301 (335)
T ss_pred             HHHhcCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEecCC
Confidence            998889999774    33321  24455666 58999999986443

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=96.67  E-value=0.012  Score=53.12  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.++++|+++|.|.--   +.+- ..+++.+..+++.+++||+..+.|.++.++.+.. ..|||+|.+=-+++
T Consensus        61 ~d~~~~A~~y~~~GA~aISVlTe---~~~F-~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~-~~GADavLLI~~~L  135 (247)
T PRK13957         61 YHPVQIAKTYETLGASAISVLTD---QSYF-GGSLEDLKSVSSELKIPVLRKDFILDEIQIREAR-AFGASAILLIVRIL  135 (247)
T ss_pred             CCHHHHHHHHHHCCCcEEEEEcC---CCcC-CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHH-HcCCCEEEeEHhhC
Confidence            46889999999999999977532   2222 2368999999999999999999999999999999 59999997765555


Q ss_pred             c
Q 020428          237 W  237 (326)
Q Consensus       237 ~  237 (326)
                      .
T Consensus       136 ~  136 (247)
T PRK13957        136 T  136 (247)
T ss_pred             C
Confidence            4

>cd00945 Aldolase_Class_I Class I aldolases

Probab=96.66  E-value=0.052  Score=46.64  Aligned_cols=124  Identities=18%  Similarity=0.179  Sum_probs=82.6

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCCC---ChHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLLK---SSQD  158 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g~---~~~~  158 (326)
                      |.+.+.+.++.+.+ |+++|.++.                        ++++.+++.+   .+|+.+++....   ..++
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~   66 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP------------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEV   66 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH------------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHH
Confidence            78888888888776 999999873                        3344443333   488898886532   2678


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCC--CcCCHHHHHHHHHhc--CCcEEE-e-CCCC-CHHHHHHH---HHhcCCcE
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPR--DPAKWGEIADIVAAL--SIPVIA-N-GDVF-EYDDFQRI---KTAAGASS  228 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~~~~~~~i~~i~~~~--~iPVi~-n-GgI~-s~~d~~~~---l~~~Gad~  228 (326)
                      +.+.++.+.++|+|++.++.-... ..+  ...-.+.++++++.+  ++||+. | -+-. +++...++   .+..|+++
T Consensus        67 ~~~~a~~a~~~Gad~i~v~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~  145 (201)
T cd00945          67 KVAEVEEAIDLGADEIDVVINIGS-LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADF  145 (201)
T ss_pred             HHHHHHHHHHcCCCEEEEeccHHH-HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCE
Confidence            999999999999999998632110 000  111256677888874  899773 2 2223 66666654   34679999


Q ss_pred             EEeccc
Q 020428          229 VMAARG  234 (326)
Q Consensus       229 VmiGr~  234 (326)
                      |=...+
T Consensus       146 iK~~~~  151 (201)
T cd00945         146 IKTSTG  151 (201)
T ss_pred             EEeCCC
Confidence            977655

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=96.63  E-value=0.033  Score=50.38  Aligned_cols=136  Identities=15%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcCC
Q 020428           94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTGV  171 (326)
Q Consensus        94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~  171 (326)
                      |+++++ |++.+=+.-.+-...   .|+-..-+-..+.+.+.++.|...+.+||++-+..|+ +..+..+.++.+.++|+
T Consensus        22 A~~~e~~G~~ai~~s~~~~~~s---~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~   98 (243)
T cd00377          22 ARLAERAGFKAIYTSGAGVAAS---LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA   98 (243)
T ss_pred             HHHHHHcCCCEEEeccHHHHHh---cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            444544 899887753221111   1222233445678888888898888999999999864 45678888999999999


Q ss_pred             cEEEEeecccCCCC---CC--cCC----HHHHHHHHHh----cCCcEEEeCCC-----CCHHHHHHH---HHhcCCcEEE
Q 020428          172 SALAVHGRKVADRP---RD--PAK----WGEIADIVAA----LSIPVIANGDV-----FEYDDFQRI---KTAAGASSVM  230 (326)
Q Consensus       172 d~i~vh~r~~~~~~---~~--~~~----~~~i~~i~~~----~~iPVi~nGgI-----~s~~d~~~~---l~~~Gad~Vm  230 (326)
                      ++|++-+.....+.   .+  ...    .+.++.+++.    .+++|++-=|.     .+.+++.+-   ..+.|||+|+
T Consensus        99 ~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~  178 (243)
T cd00377          99 AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF  178 (243)
T ss_pred             EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence            99999554332111   11  111    1223333333    24666665221     234444322   2368999999


Q ss_pred             ec
Q 020428          231 AA  232 (326)
Q Consensus       231 iG  232 (326)
                      +=
T Consensus       179 v~  180 (243)
T cd00377         179 VE  180 (243)
T ss_pred             eC
Confidence            85

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=96.62  E-value=0.025  Score=55.77  Aligned_cols=102  Identities=11%  Similarity=0.237  Sum_probs=74.1

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      .++.+.++++...+ .+.-..|-+.       ..+.++.+.++|++.|-|.+|.-...   ..|.+...++...+  ++.
T Consensus       144 ~~~~l~~l~~~a~~-lGl~~lvEvh-------~~~El~~al~~~a~iiGiNnRdL~t~---~vd~~~~~~l~~~ip~~~~  212 (454)
T PRK09427        144 DDEQYRQLAAVAHS-LNMGVLTEVS-------NEEELERAIALGAKVIGINNRNLRDL---SIDLNRTRELAPLIPADVI  212 (454)
T ss_pred             CHHHHHHHHHHHHH-cCCcEEEEEC-------CHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcE
Confidence            35566666666654 3666666553       23445566778999998988865533   34666677777665  567


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +|+-+||.|++|+.++. . |+|+|.||.++|.+|..
T Consensus       213 ~vseSGI~t~~d~~~~~-~-~~davLiG~~lm~~~d~  247 (454)
T PRK09427        213 VISESGIYTHAQVRELS-P-FANGFLIGSSLMAEDDL  247 (454)
T ss_pred             EEEeCCCCCHHHHHHHH-h-cCCEEEECHHHcCCCCH
Confidence            88999999999999975 4 69999999999998763

>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase

Probab=96.61  E-value=0.11  Score=48.74  Aligned_cols=128  Identities=9%  Similarity=0.120  Sum_probs=89.3

Q ss_pred             EEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCCCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLLKS  155 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g~~  155 (326)
                      ....|...+++.+.+.+.. ..|+..+-+..|-               .+++.-.+.++++++.++  ..+.+-..-+|+
T Consensus       103 ~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~  166 (307)
T TIGR01927       103 YVALLPAGDPALLLLRSAK-AEGFRTFKWKVGV---------------GELAREGMLVNLLLEALPDKAELRLDANGGLS  166 (307)
T ss_pred             ceeeccCCCHHHHHHHHHH-hCCCCEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCC
Confidence            3444555677766655554 4588888775431               145566777888888763  344444444699


Q ss_pred             hHHHHHHHHHHHH---cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          156 SQDTVELARRIEK---TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       156 ~~~~~e~a~~l~~---~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ..++.++++.+++   .++.+|       +|..  + ..+..+++++.+++||.+.=.+.+..|+.++++...+|.+++
T Consensus       167 ~~~A~~~~~~l~~~~~~~i~~i-------EqP~--~-~~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i  235 (307)
T TIGR01927       167 PDEAQQFLKALDPNLRGRIAFL-------EEPL--P-DADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVI  235 (307)
T ss_pred             HHHHHHHHHhcccccCCCceEE-------eCCC--C-CHHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence            9999999999997   777776       2211  1 237788899999999999989999999999995433566654

This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=96.61  E-value=0.044  Score=52.29  Aligned_cols=42  Identities=24%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          188 PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       188 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ..+|+.++.+++..++||+.-| |.+++|++.+. +.|+|+|.+
T Consensus       207 ~~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~-~~G~d~I~v  248 (351)
T cd04737         207 KLSPADIEFIAKISGLPVIVKG-IQSPEDADVAI-NAGADGIWV  248 (351)
T ss_pred             CCCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHH-HcCCCEEEE
Confidence            4579999999999999999875 89999999999 699999988

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=96.57  E-value=0.014  Score=58.51  Aligned_cols=76  Identities=17%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             HHHHHHHHcCCcEEEEeecccCC--CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc---EEEeccch
Q 020428          161 ELARRIEKTGVSALAVHGRKVAD--RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS---SVMAARGA  235 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad---~VmiGr~~  235 (326)
                      +.+..+.+.|+|+|.+..--...  ....+..++.++++.+..++||++-|||. ++++.+++ .+|++   +|.+++++
T Consensus       401 ~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~-~~G~~~~~gvav~~~i  478 (502)
T PLN02898        401 EQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVM-ESGAPNLKGVAVVSAL  478 (502)
T ss_pred             HHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHH-HcCCCcCceEEEEeHH
Confidence            44566677899999854321111  11245679999999888899999999995 89999999 68988   99999998


Q ss_pred             hcC
Q 020428          236 LWN  238 (326)
Q Consensus       236 l~~  238 (326)
                      +..
T Consensus       479 ~~~  481 (502)
T PLN02898        479 FDQ  481 (502)
T ss_pred             hcC
Confidence            743

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.56  E-value=0.015  Score=58.00  Aligned_cols=69  Identities=22%  Similarity=0.319  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +..+.++.+.++|+|.|++..-...    ....|+.++++++.. ++||++ |+|.|.+++..++ +.|||+|.+|
T Consensus       241 ~~~~~~~~l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~-~aGad~I~vg  310 (495)
T PTZ00314        241 EDIERAAALIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLI-DAGADGLRIG  310 (495)
T ss_pred             HHHHHHHHHHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHH-HcCCCEEEEC
Confidence            4488999999999999998653111    122378999999885 678777 9999999999999 6999999865

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=96.56  E-value=0.024  Score=53.26  Aligned_cols=97  Identities=12%  Similarity=0.012  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHc--CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKT--GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV  205 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV  205 (326)
                      ++.-.+.++.+.+....-+++  ..|..+ +..+.++.|.++  |+|.|+|.--..   ++ ..-.+.++.|++..+-+.
T Consensus        80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~-~d~er~~~L~~a~~~~d~iviD~AhG---hs-~~~i~~ik~ir~~~p~~~  152 (343)
T TIGR01305        80 VDEWKAFATNSSPDCLQNVAV--SSGSSD-NDLEKMTSILEAVPQLKFICLDVANG---YS-EHFVEFVKLVREAFPEHT  152 (343)
T ss_pred             HHHHHHHHHhhcccccceEEE--EeccCH-HHHHHHHHHHhcCCCCCEEEEECCCC---cH-HHHHHHHHHHHhhCCCCe
Confidence            455455555544333223333  223333 445667777776  499999853211   11 123677889998877778


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +..|+|.|+++++.++ ..|||+|-||
T Consensus       153 viaGNV~T~e~a~~Li-~aGAD~ikVg  178 (343)
T TIGR01305       153 IMAGNVVTGEMVEELI-LSGADIVKVG  178 (343)
T ss_pred             EEEecccCHHHHHHHH-HcCCCEEEEc
Confidence            8889999999999999 6999999888

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=96.55  E-value=0.057  Score=49.96  Aligned_cols=126  Identities=14%  Similarity=0.211  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+. ..+.+++++
T Consensus        16 iD~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~~i~   84 (285)
T TIGR00674        16 VDFAALEKLIDFQIENGTDAIVVVG----------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEEAIS   84 (285)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHHHHH
Confidence            467778888887665 999988753          233333334555566666665554  477777653 246789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-.-. .++...-+++++.|.+.+++||+ +     .|---+++.+.++.+
T Consensus        85 ~a~~a~~~Gad~v~v~pP~y~-~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~  150 (285)
T TIGR00674        85 LTKFAEDVGADGFLVVTPYYN-KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE  150 (285)
T ss_pred             HHHHHHHcCCCEEEEcCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence            999999999999998643211 11111224566778888889986 3     454567888877763

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=96.54  E-value=0.046  Score=52.66  Aligned_cols=44  Identities=20%  Similarity=0.437  Sum_probs=39.2

Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +..+|+.++.+++..++||+.- ||.|.+|++.++ +.|+|+|.|+
T Consensus       238 ~~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~-~~G~d~I~vs  281 (383)
T cd03332         238 PSLTWEDLAFLREWTDLPIVLK-GILHPDDARRAV-EAGVDGVVVS  281 (383)
T ss_pred             CCCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHH-HCCCCEEEEc
Confidence            3468999999999999999875 789999999999 6999999986

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PRK14057 epimerase; Provisional

Probab=96.54  E-value=0.13  Score=46.70  Aligned_cols=141  Identities=9%  Similarity=0.054  Sum_probs=85.0

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~  152 (326)
                      .++.++|...|...+.+..+.+.+ |+|.  +|+==|.=+|+             ..+--++++++++  +.|+.|=+=.
T Consensus        20 ~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN-------------itfGp~~i~~i~~--~~p~DvHLMV   84 (254)
T PRK14057         20 YPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ-------------FTVGPWAVGQLPQ--TFIKDVHLMV   84 (254)
T ss_pred             CceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc-------------cccCHHHHHHhcc--CCCeeEEeee
Confidence            478999999999999999999877 7775  45532322221             1122234455544  4565554432


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccC--------------------------------------------------
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVA--------------------------------------------------  182 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--------------------------------------------------  182 (326)
                          .++..+++.+.++|+|.|++|.-...                                                  
T Consensus        85 ----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLv  160 (254)
T PRK14057         85 ----ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQL  160 (254)
T ss_pred             ----CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEE
Confidence                23555667777777777777733110                                                  


Q ss_pred             ----CCCCCc----CCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          183 ----DRPRDP----AKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       183 ----~~~~~~----~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                          .++.|.    .-++-|+++++.     .++.|-+-|||+ .+.+.++. ..|||.+++|+++..
T Consensus       161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~-~aGad~~V~GSalF~  226 (254)
T PRK14057        161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLI-AQGIDRVVSGSALFR  226 (254)
T ss_pred             EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhC
Confidence                011111    112233333332     246688899996 67888888 699999999998644

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=96.51  E-value=0.099  Score=48.52  Aligned_cols=122  Identities=16%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.+          .|-...-..+.-.++++.+.+.+  .+||.+-+.  .+..++++
T Consensus        18 iD~~~l~~l~~~l~~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~   85 (289)
T cd00951          18 FDEDAYRAHVEWLLSYGAAALFAAGG----------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIA   85 (289)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHH
Confidence            467778888877766 8999988742          34444445556666677666655  589988775  37889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCc---CCHHHHHHHHHhcCCcEE-Ee--CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDP---AKWGEIADIVAALSIPVI-AN--GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~~iPVi-~n--GgI~s~~d~~~~l~  222 (326)
                      +++.++++|+|++.+..-    .|..+   .-.++++.|.+.+++||+ +|  |--.+++.+.++.+
T Consensus        86 ~a~~a~~~Gad~v~~~pP----~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~  148 (289)
T cd00951          86 YAQAAEKAGADGILLLPP----YLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE  148 (289)
T ss_pred             HHHHHHHhCCCEEEECCC----CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence            999999999999988532    12222   124556778888889975 43  32345777666653

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=96.51  E-value=0.073  Score=49.40  Aligned_cols=125  Identities=16%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=+|..          .|-...-..+.-.++++.+.+.+  ++||.+-+.. .+..++++
T Consensus        19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs----------~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~   87 (292)
T PRK03170         19 VDFAALRKLVDYLIANGTDGLVVVGT----------TGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIE   87 (292)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCc----------CCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHH
Confidence            477888888887766 9999988642          33444445566666677666655  4677766542 46789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l  221 (326)
                      .++.++++|+|++.+..-.-. ..+...-.+++.+|.+.+++||+ +     .|---|++.+.++.
T Consensus        88 ~a~~a~~~G~d~v~~~pP~~~-~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~  152 (292)
T PRK03170         88 LTKFAEKAGADGALVVTPYYN-KPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA  152 (292)
T ss_pred             HHHHHHHcCCCEEEECCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence            999999999999998642111 01111224556777777888876 3     35455677777765

>TIGR03247 glucar-dehydr glucarate dehydratase

Probab=96.50  E-value=0.1  Score=51.43  Aligned_cols=122  Identities=11%  Similarity=0.123  Sum_probs=86.7

Q ss_pred             CHHHHHHHHH-Hhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAK-MVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~-~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.|+ .+.+ ||..+-+-.|-+               +++.-.+.++++|+++ ++.+.+-...+|+.++++++
T Consensus       180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~  244 (441)
T TIGR03247       180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL  244 (441)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence            5676665555 3444 999988865421               2344566788888776 34555555557999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCC----HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAK----WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+++. +.+|       +|. ..+.+    ++.++++++.+++||.+.=.+.+..++..+++...+|.+++
T Consensus       245 ~~~Le~~-~~~i-------EeP-v~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~  308 (441)
T TIGR03247       245 CKDLKGV-LAYA-------EDP-CGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLA  308 (441)
T ss_pred             HHHhhhh-hceE-------eCC-CCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence            9999986 6543       222 22334    78899999999999998878899999999996555777553

Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=96.50  E-value=0.02  Score=52.76  Aligned_cols=87  Identities=14%  Similarity=0.206  Sum_probs=54.8

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHh-cCCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAA-LSIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~-~~iPVi~n  208 (326)
                      .+.++.+|+.. +.++.+-++      + .+.+..+.++|+|+|-+......       +. +.++.+++. .++|+++.
T Consensus       171 ~~av~~~R~~~~~~~IgVev~------t-~eea~~A~~~gaD~I~ld~~~p~-------~l~~~~~~~~~~~~~i~i~As  236 (272)
T cd01573         171 LKALARLRATAPEKKIVVEVD------S-LEEALAAAEAGADILQLDKFSPE-------ELAELVPKLRSLAPPVLLAAA  236 (272)
T ss_pred             HHHHHHHHHhCCCCeEEEEcC------C-HHHHHHHHHcCCCEEEECCCCHH-------HHHHHHHHHhccCCCceEEEE
Confidence            44556666554 223333332      2 23444556899999988654221       22 233334333 26999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ||| +++.+.++. .+|+|++++|.-
T Consensus       237 GGI-~~~ni~~~~-~~Gvd~I~vsai  260 (272)
T cd01573         237 GGI-NIENAAAYA-AAGADILVTSAP  260 (272)
T ss_pred             CCC-CHHHHHHHH-HcCCcEEEEChh
Confidence            999 799999999 699999976654

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=96.49  E-value=0.054  Score=51.42  Aligned_cols=83  Identities=22%  Similarity=0.286  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHH--cCCcEEEEeecc----cCC------CCCCcCCHHHHHHHHHhcCCcEEE-eCCCCCHHHHHHHHH
Q 020428          156 SQDTVELARRIEK--TGVSALAVHGRK----VAD------RPRDPAKWGEIADIVAALSIPVIA-NGDVFEYDDFQRIKT  222 (326)
Q Consensus       156 ~~~~~e~a~~l~~--~G~d~i~vh~r~----~~~------~~~~~~~~~~i~~i~~~~~iPVi~-nGgI~s~~d~~~~l~  222 (326)
                      ++.....++.+.+  .|+|.+-+---.    .++      -|+...-.+.++++.+..++|++. +||+ |.+++.+.++
T Consensus       183 p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~  261 (340)
T PRK12858        183 PEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLE  261 (340)
T ss_pred             HHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH
Confidence            4557777888884  999998763110    011      111111125677778888999775 7887 6666665542


Q ss_pred             ---hcCC--cEEEeccchhcCc
Q 020428          223 ---AAGA--SSVMAARGALWNA  239 (326)
Q Consensus       223 ---~~Ga--d~VmiGr~~l~~P  239 (326)
                         +.|+  .||.+||....++
T Consensus       262 ~A~~aGa~f~Gvl~GRniwq~~  283 (340)
T PRK12858        262 FACEAGADFSGVLCGRATWQDG  283 (340)
T ss_pred             HHHHcCCCccchhhhHHHHhhh
Confidence               4799  9999999988754

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=96.47  E-value=0.19  Score=44.29  Aligned_cols=175  Identities=10%  Similarity=0.100  Sum_probs=96.7

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCce--ecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEEC-CCCHHH
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEI--IDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMG-TSDAVR   89 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~-g~~~~~   89 (326)
                      +|.|+..=..+|.++|++.+.--+.  |+..+.                 .+.-+.+....+..-.+++  ++ ..+++.
T Consensus         6 CGit~~eda~~~~~~GaD~iGfIf~~~SpR~V~-----------------~~~a~~i~~~~~~~~~~Vg--Vf~~~~~~~   66 (207)
T PRK13958          6 CGFTTIKDVTAASQLPIDAIGFIHYEKSKRHQT-----------------ITQIKKLASAVPNHIDKVC--VVVNPDLTT   66 (207)
T ss_pred             cCCCcHHHHHHHHHcCCCEEEEecCCCCcccCC-----------------HHHHHHHHHhCCCCCCEEE--EEeCCCHHH
Confidence            6888888888999999876632110  111110                 0000111222222112333  34 346666


Q ss_pred             HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHH
Q 020428           90 ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEK  168 (326)
Q Consensus        90 ~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~  168 (326)
                      ..+.++.+  +.|.|.||..                .++++    ++.++... .+++.--++.  +. +..+.+..+..
T Consensus        67 i~~~~~~~--~~d~vQLHG~----------------e~~~~----~~~l~~~~~~~~iika~~~--~~-~~~~~~~~~~~  121 (207)
T PRK13958         67 IEHILSNT--SINTIQLHGT----------------ESIDF----IQEIKKKYSSIKIIKALPA--DE-NIIQNINKYKG  121 (207)
T ss_pred             HHHHHHhC--CCCEEEECCC----------------CCHHH----HHHHhhcCCCceEEEEecc--cH-HHHHHHHHHHh
Confidence            66655432  6799999842                12333    44444432 3555444443  21 22233333333


Q ss_pred             cCCcEEEEeecccC-CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-hcCCcEEEeccchh
Q 020428          169 TGVSALAVHGRKVA-DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT-AAGASSVMAARGAL  236 (326)
Q Consensus       169 ~G~d~i~vh~r~~~-~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~-~~Gad~VmiGr~~l  236 (326)
                       .+|++.+...... ++.....||+.++.+   .+.|++..|||+ ++.+.++++ ..+..||=+.+|.=
T Consensus       122 -~~d~~LlDs~~~~~GGtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGVE  186 (207)
T PRK13958        122 -FVDLFIIDTPSVSYGGTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGIE  186 (207)
T ss_pred             -hCCEEEEcCCCCCCCcCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEcccccC
Confidence             4899988864322 122235799998766   356999999996 777777764 35778999998854

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=96.47  E-value=0.049  Score=51.82  Aligned_cols=97  Identities=16%  Similarity=0.133  Sum_probs=69.4

Q ss_pred             HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE-eec--ccCCCC-CCcCCHHHHHHHHHhcCCcEEEeC-
Q 020428          135 LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV-HGR--KVADRP-RDPAKWGEIADIVAALSIPVIANG-  209 (326)
Q Consensus       135 v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v-h~r--~~~~~~-~~~~~~~~i~~i~~~~~iPVi~nG-  209 (326)
                      ++++. ..+.||.+|.....+.++....++.+.+.|..-|++ |..  |-...| ....|+..+..+++..++|||..- 
T Consensus       201 L~~va-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps  279 (352)
T PRK13396        201 LKKVG-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS  279 (352)
T ss_pred             HHHHH-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc
Confidence            44443 348999999988878899999999999999976654 542  333222 367799999999998899998652 


Q ss_pred             ---CCC--CHHHHHHHHHhcCCcEEEecc
Q 020428          210 ---DVF--EYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       210 ---gI~--s~~d~~~~l~~~Gad~VmiGr  233 (326)
                         |.+  ++.-+...+ ..||||++|=+
T Consensus       280 H~~G~sd~~~~~a~AAv-a~GAdGliIE~  307 (352)
T PRK13396        280 HGTGKSEYVPSMAMAAI-AAGTDSLMIEV  307 (352)
T ss_pred             ccCCcHHHHHHHHHHHH-hhCCCeEEEEe
Confidence               222  233344555 58999999875

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.45  E-value=0.028  Score=53.00  Aligned_cols=100  Identities=13%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             ccC-ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC--cEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428          124 LLS-KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV--SALAVHGRKVADRPRDPAKWGEIADIVAA  200 (326)
Q Consensus       124 l~~-~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~--d~i~vh~r~~~~~~~~~~~~~~i~~i~~~  200 (326)
                      +.+ +++.....++.+.   +..+.+-+..+.++ +..+.+..+.++|+  |.|.+..-.    .....-.+.+++|++.
T Consensus        66 ~~k~~~e~~~~~~r~~~---~~~l~v~~~vg~~~-~~~~~~~~Lv~ag~~~d~i~iD~a~----gh~~~~~e~I~~ir~~  137 (326)
T PRK05458         66 MHRFDPEARIPFIKDMH---EQGLIASISVGVKD-DEYDFVDQLAAEGLTPEYITIDIAH----GHSDSVINMIQHIKKH  137 (326)
T ss_pred             EecCCHHHHHHHHHhcc---ccccEEEEEecCCH-HHHHHHHHHHhcCCCCCEEEEECCC----CchHHHHHHHHHHHhh
Confidence            444 6766666664443   22345555555444 44567777888855  999984332    0112235778999988


Q ss_pred             cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          201 LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       201 ~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+-+.+..|+|.|.+++..+. +.|+|++.+|
T Consensus       138 ~p~~~vi~g~V~t~e~a~~l~-~aGad~i~vg  168 (326)
T PRK05458        138 LPETFVIAGNVGTPEAVRELE-NAGADATKVG  168 (326)
T ss_pred             CCCCeEEEEecCCHHHHHHHH-HcCcCEEEEC
Confidence            763344558899999999999 6999999887

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=96.45  E-value=0.045  Score=52.45  Aligned_cols=44  Identities=23%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ...+|+.++.+++..++||+.= ||.+.+|++.+. +.|+|+|.|+
T Consensus       213 ~~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~-~~Gvd~I~VS  256 (367)
T TIGR02708       213 QKLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRAL-KAGASGIWVT  256 (367)
T ss_pred             CCCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHH-HcCcCEEEEC
Confidence            3468999999999999999976 699999999999 6999998775

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PRK02901 O-succinylbenzoate synthase; Provisional

Probab=96.43  E-value=0.23  Score=47.01  Aligned_cols=129  Identities=15%  Similarity=0.145  Sum_probs=89.4

Q ss_pred             ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecCCCChHHH
Q 020428           82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRLLKSSQDT  159 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~  159 (326)
                      +...+++...+.++.. .|+..+-+..|=+         |    .+++.-.+.++++++.++  ..+.+-..-+|+.+++
T Consensus        85 v~~~~~e~~~~~~~~~-~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~A  150 (327)
T PRK02901         85 VPAVDAAQVPEVLARF-PGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEA  150 (327)
T ss_pred             eCCCCHHHHHHHHHHh-CCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence            3334566554444432 4777777655411         1    245556677888888874  4445554447999999


Q ss_pred             HHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          160 VELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       160 ~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +++++.+ ++.++.+|-       |..   .+++...++++.+++||.+.=.+++..|..++++..++|.+++-=+
T Consensus       151 i~~~~~L~e~~~l~~iE-------qP~---~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~  216 (327)
T PRK02901        151 VAAARALDADGPLEYVE-------QPC---ATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVA  216 (327)
T ss_pred             HHHHHHhhhccCceEEe-------cCC---CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcc
Confidence            9999999 677777762       111   1377888999999999988888999999999997677888877533

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=96.42  E-value=0.18  Score=46.39  Aligned_cols=166  Identities=14%  Similarity=0.267  Sum_probs=98.5

Q ss_pred             eeecccCCCCcEEEEECCCC------HHHHHHHHHHhhcCCC-EEEEccC-CCccc----ccccccccccc--------C
Q 020428           67 VFRTCHQERNHVVFQMGTSD------AVRALTAAKMVCKDVA-AIDINMG-CPKSF----SVSGGMGAALL--------S  126 (326)
Q Consensus        67 ~~~~~~~~~~p~~vQl~g~~------~~~~~~aa~~~~~~~d-~idlN~g-cP~~~----~~~~~~G~~l~--------~  126 (326)
                      +++...+.+.|+++|+.-..      .+.++...+.+.+.+. =|-||+. |+...    ..+.|+.|-++        .
T Consensus        34 ileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE  113 (286)
T COG0191          34 ILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE  113 (286)
T ss_pred             HHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHH
Confidence            46666777889999985221      2334444444444222 2344443 33321    12345544433        2


Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecC-C-C-C----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCC--C-cCC
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRL-L-K-S----------SQDTVELARRIEKTGVSALAVHGRKVADRPR--D-PAK  190 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~-~----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~-~~~  190 (326)
                      |-...+++++.... .+++|-+-+.. | . +          ..++.+..+.++..|+|.|.+.=.+..+.|.  . ..+
T Consensus       114 Ni~~tkevv~~ah~-~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~  192 (286)
T COG0191         114 NIAITKEVVEFAHA-YGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLD  192 (286)
T ss_pred             HHHHHHHHHHHHHH-cCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCC
Confidence            33444444444432 26666555543 2 1 1          1245666677788899999865445544554  2 358


Q ss_pred             HHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccc
Q 020428          191 WGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       191 ~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ++.++++.+.+++|++.-||=.. .+++++.+ ..|+.-|=|.+-
T Consensus       193 ~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI-~~GV~KvNi~Td  236 (286)
T COG0191         193 FDRLKEIQEAVSLPLVLHGGSGIPDEEIREAI-KLGVAKVNIDTD  236 (286)
T ss_pred             HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HhCceEEeeCcH
Confidence            89999999999999987776443 57889999 689888877754

>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]

Probab=96.40  E-value=0.038  Score=54.53  Aligned_cols=193  Identities=14%  Similarity=0.141  Sum_probs=108.6

Q ss_pred             CCceEEccccCCC-CHHHHHHHHHcC-----C-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCC
Q 020428            4 QNKLVLAPMVRVG-TLPFRLLAAQYG-----A-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERN   76 (326)
Q Consensus         4 ~~~iilAPM~g~t-~~~fr~~~~~~G-----~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (326)
                      +.|+++|-|.--| |+.|..++.+.|     | |-.+||-+..+.+..    +-.      .+             +.+.
T Consensus        34 r~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~q----l~~------~l-------------epG~   90 (717)
T COG4981          34 RSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQ----LVS------LL-------------EPGR   90 (717)
T ss_pred             CCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHH----HHh------cc-------------CCCc
Confidence            5689999887654 688999999987     2 344455443332211    000      00             0111


Q ss_pred             cEEEEECCCCHHHH------HHHHHHhh-cCC--CEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428           77 HVVFQMGTSDAVRA------LTAAKMVC-KDV--AAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT  147 (326)
Q Consensus        77 p~~vQl~g~~~~~~------~~aa~~~~-~~~--d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~  147 (326)
                      ...++..=-||-.+      .+..+.+. .|+  ++|-|..|-|.               .|...++++.+..- ++|-.
T Consensus        91 t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~---------------le~A~ElI~~L~~~-G~~yv  154 (717)
T COG4981          91 TAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS---------------LEEAVELIEELGDD-GFPYV  154 (717)
T ss_pred             cceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc---------------HHHHHHHHHHHhhc-CceeE
Confidence            12222211222111      12222232 354  79999888774               36677777777432 55532


Q ss_pred             EEecCCCChHHHHHHHHHHHHcCCcEEEEe--ecccCCCCC-CcCC---HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Q 020428          148 CKIRLLKSSQDTVELARRIEKTGVSALAVH--GRKVADRPR-DPAK---WGEIADIVAALSIPVIANGDVFEYDDFQRIK  221 (326)
Q Consensus       148 vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh--~r~~~~~~~-~~~~---~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l  221 (326)
                      + +..| +.+..-.+++++.+..---|++|  |..+.++.+ ...|   +....+++++-+|-+|..|||.|++++...+
T Consensus       155 ~-fKPG-tIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YL  232 (717)
T COG4981         155 A-FKPG-TIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYL  232 (717)
T ss_pred             E-ecCC-cHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhccccc
Confidence            2 2222 34445555666666665555554  433333322 1111   2234677777799999999999999999887


Q ss_pred             H-----hc-----CCcEEEeccchhc
Q 020428          222 T-----AA-----GASSVMAARGALW  237 (326)
Q Consensus       222 ~-----~~-----Gad~VmiGr~~l~  237 (326)
                      .     .+     ..||+.+|+++|.
T Consensus       233 TGeWSt~~g~P~MP~DGiLvGtaaMa  258 (717)
T COG4981         233 TGEWSTAYGFPPMPFDGILVGTAAMA  258 (717)
T ss_pred             ccchhhhcCCCCCCcceeEechhHHh
Confidence            2     12     3899999999995

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.36  E-value=0.038  Score=50.93  Aligned_cols=93  Identities=9%  Similarity=0.094  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHh---cCCcE
Q 020428          131 IHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAA---LSIPV  205 (326)
Q Consensus       131 ~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~---~~iPV  205 (326)
                      +.+.++.+++.. ..+|.|-.       ++.+.+..+.++|+|.|.+...+.+       +. +.+..+++.   .++.+
T Consensus       169 i~~av~~~r~~~~~~kIeVEv-------~~leea~~a~~agaDiI~LDn~~~e-------~l~~~v~~l~~~~~~~~~~l  234 (278)
T PRK08385        169 LEEAIRRAKEFSVYKVVEVEV-------ESLEDALKAAKAGADIIMLDNMTPE-------EIREVIEALKREGLRERVKI  234 (278)
T ss_pred             HHHHHHHHHHhCCCCcEEEEe-------CCHHHHHHHHHcCcCEEEECCCCHH-------HHHHHHHHHHhcCcCCCEEE
Confidence            344555555543 35566655       3456667777899999988766322       22 222223321   25679


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      .++||| +.+.+.++. .+|+|.+.+|.-...-|
T Consensus       235 eaSGGI-~~~ni~~yA-~tGvD~Is~galt~sa~  266 (278)
T PRK08385        235 EVSGGI-TPENIEEYA-KLDVDVISLGALTHSVR  266 (278)
T ss_pred             EEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCC
Confidence            999999 799999998 69999999997655333

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=96.35  E-value=0.011  Score=62.00  Aligned_cols=69  Identities=16%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             cCCcEEEEeecccCC---CCCCcCCHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          169 TGVSALAVHGRKVAD---RPRDPAKWGEIADIVAALS---IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       169 ~G~d~i~vh~r~~~~---~~~~~~~~~~i~~i~~~~~---iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +|+|++.+..--...   ....+..|+.++++++.++   +||++-||| +++++.+++ .+|++||.+-++++..+
T Consensus       127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~-~~Ga~giAvisai~~a~  201 (755)
T PRK09517        127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELA-ATGIDGLCVVSAIMAAA  201 (755)
T ss_pred             CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHH-HcCCCEEEEehHhhCCC
Confidence            359999986542221   2223457999999998887   999999999 699999999 69999999999998643

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=96.33  E-value=0.14  Score=47.62  Aligned_cols=122  Identities=12%  Similarity=0.130  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      -|.+.+.+-.+.+.+ | +++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+.. .+.++++
T Consensus        18 iD~~~~~~~i~~~i~~G~v~gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i   86 (290)
T TIGR00683        18 INEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV   86 (290)
T ss_pred             cCHHHHHHHHHHHHhCCCcCEEEECC----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHH
Confidence            467788888887665 8 89988864          234444446667777777776665  4788776642 4678999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHH
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIK  221 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l  221 (326)
                      ++++.+++.|+|++.+..=    .|..+.   -+++++++.+.+ ++||+ +     .|---+++.+.++.
T Consensus        87 ~la~~a~~~Gad~v~v~~P----~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~  153 (290)
T TIGR00683        87 ELGKYATELGYDCLSAVTP----FYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELY  153 (290)
T ss_pred             HHHHHHHHhCCCEEEEeCC----cCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHh
Confidence            9999999999999998532    122221   244556666655 67765 3     25455666666665

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.051  Score=49.10  Aligned_cols=117  Identities=19%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             cccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec---ccCCCCCCcCCHHHHHHH
Q 020428          121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR---KVADRPRDPAKWGEIADI  197 (326)
Q Consensus       121 G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r---~~~~~~~~~~~~~~i~~i  197 (326)
                      |+..|+|.+++.+    + .+.++||..|=.++-+.++++.-|+.+...|-..|++--|   |-+.......|...+..+
T Consensus       135 GARNMQNF~LLke----~-G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~  209 (286)
T COG2876         135 GARNMQNFALLKE----V-GRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPIL  209 (286)
T ss_pred             cccchhhhHHHHH----h-cccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHH
Confidence            4555666655443    3 3448999999998889999999999999999988887544   333323346788999999


Q ss_pred             HHhcCCcEEEeCCC-CCHHH-----HHHHHHhcCCcEEEeccchhcCccccccc
Q 020428          198 VAALSIPVIANGDV-FEYDD-----FQRIKTAAGASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       198 ~~~~~iPVi~nGgI-~s~~d-----~~~~l~~~Gad~VmiGr~~l~~P~lf~~~  245 (326)
                      ++.+.+|||+.=.= +...+     +...+ ..||||+|+=  .--||.-.-..
T Consensus       210 kq~THLPVivDpSH~~Grr~lv~pla~AA~-AaGAdglmiE--VHp~P~~AlsD  260 (286)
T COG2876         210 KQETHLPVIVDPSHATGRRDLVEPLAKAAI-AAGADGLMIE--VHPDPEKALSD  260 (286)
T ss_pred             HhhcCCCEEECCCCcccchhhHHHHHHHHH-hccCCeeEEE--ecCCcccccCc
Confidence            99999999975221 11222     23344 5799999985  23466554443

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=96.25  E-value=0.14  Score=47.65  Aligned_cols=123  Identities=16%  Similarity=0.183  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-...-..+.-.++++.+.+.+  .+||.+-+.. .+..++++
T Consensus        18 iD~~~l~~lv~~~~~~Gv~gi~v~Gs----------tGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~   86 (294)
T TIGR02313        18 IDEEALRELIEFQIEGGSHAISVGGT----------SGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLE   86 (294)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------CcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHH
Confidence            467778888877665 8999888642          34444444555566666665544  4788766642 56788999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCc---CCHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDP---AKWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-.    |..+   .-.++++.|.+.+ ++||+ +     .|---+++.+.++.+
T Consensus        87 ~a~~A~~~Gad~v~v~pP~----y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~  153 (294)
T TIGR02313        87 LTKFAEEAGADAAMVIVPY----YNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRK  153 (294)
T ss_pred             HHHHHHHcCCCEEEEcCcc----CCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence            9999999999999986532    2222   2345667788888 89976 3     344556777777763

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.24  E-value=0.066  Score=51.91  Aligned_cols=70  Identities=14%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++.+.++.+.++|+|.|.+..-...    +..-.+.++++++.. +++ +..|+|.|+++++.++ +.|||+|.+|=
T Consensus       153 ~~~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~-~aGaD~I~vG~  223 (404)
T PRK06843        153 DTIERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLI-SVGADCLKVGI  223 (404)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHH-HcCCCEEEECC
Confidence            4778999999999999998543211    223467888998876 566 4568999999999999 69999999873

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.21  E-value=0.052  Score=47.63  Aligned_cols=87  Identities=20%  Similarity=0.375  Sum_probs=68.2

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      ++..=+| +.+.++..++++.+.+.|+..|-|+-++       |...+.|+++++..+--+++.|-|.|.+++++++ +.
T Consensus         5 ~vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai-~a   75 (201)
T PRK06015          5 PVIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAA-KA   75 (201)
T ss_pred             CEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHH-Hc
Confidence            4444456 4678899999999999999999998764       3357889999887755689999999999999999 69


Q ss_pred             CCcEEEeccchhcCccccc
Q 020428          225 GASSVMAARGALWNASIFS  243 (326)
Q Consensus       225 Gad~VmiGr~~l~~P~lf~  243 (326)
                      |++.++-=   -.||.+..
T Consensus        76 GA~FivSP---~~~~~vi~   91 (201)
T PRK06015         76 GSRFIVSP---GTTQELLA   91 (201)
T ss_pred             CCCEEECC---CCCHHHHH
Confidence            99987643   23555544

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=96.21  E-value=0.053  Score=47.70  Aligned_cols=88  Identities=20%  Similarity=0.338  Sum_probs=68.4

Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      .++..=+|. .+.++..++++.+.+.|++.|-|+-++       +..++.|+++++..+--+++.|.|.|.+++++++ .
T Consensus         8 ~~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~-~   78 (204)
T TIGR01182         8 AKIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAV-D   78 (204)
T ss_pred             CCEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH-H
Confidence            345555663 577899999999999999999998764       3357889999887654578999999999999999 6


Q ss_pred             cCCcEEEeccchhcCccccc
Q 020428          224 AGASSVMAARGALWNASIFS  243 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf~  243 (326)
                      .||+.++- -++  ||.+..
T Consensus        79 aGA~Fivs-P~~--~~~v~~   95 (204)
T TIGR01182        79 AGAQFIVS-PGL--TPELAK   95 (204)
T ss_pred             cCCCEEEC-CCC--CHHHHH
Confidence            99998843 232  665554

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=96.15  E-value=0.08  Score=51.00  Aligned_cols=44  Identities=14%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ...+|+-|+.|++..+.|||. .||.|.+|+..++ +.|+|+|.++
T Consensus       230 ~~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~-~~Gvd~I~Vs  273 (381)
T PRK11197        230 PSISWKDLEWIRDFWDGPMVI-KGILDPEDARDAV-RFGADGIVVS  273 (381)
T ss_pred             CCCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHH-hCCCCEEEEC
Confidence            356899999999999999876 5689999999999 6999999876

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.15  E-value=0.05  Score=51.12  Aligned_cols=98  Identities=14%  Similarity=0.074  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHH--cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCc
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEK--TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIP  204 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iP  204 (326)
                      ++.-.+.++.++.....-++|  ..|..+++ .+.++.|.+  +|+|.|+|.--..   ++ ..-.+.+++|++.. +++
T Consensus        81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~d-~er~~~L~~~~~g~D~iviD~AhG---hs-~~~i~~ik~ik~~~P~~~  153 (346)
T PRK05096         81 VEEWAAFVNNSSADVLKHVMV--STGTSDAD-FEKTKQILALSPALNFICIDVANG---YS-EHFVQFVAKAREAWPDKT  153 (346)
T ss_pred             HHHHHHHHHhccccccceEEE--EecCCHHH-HHHHHHHHhcCCCCCEEEEECCCC---cH-HHHHHHHHHHHHhCCCCc
Confidence            555566666666443222333  22333433 455555555  6999999853211   11 12367789999876 566


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      | ..|+|.|++.++.++ ..|||+|=||=|
T Consensus       154 v-IaGNV~T~e~a~~Li-~aGAD~vKVGIG  181 (346)
T PRK05096        154 I-CAGNVVTGEMVEELI-LSGADIVKVGIG  181 (346)
T ss_pred             E-EEecccCHHHHHHHH-HcCCCEEEEccc
Confidence            4 569999999999999 699999987744

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.12  E-value=0.02  Score=56.52  Aligned_cols=70  Identities=20%  Similarity=0.248  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+..+.++.+.++|+|.|.|......    ...-++.++++++. .++||++ |+|.|++++..++ ..|||+|-+|
T Consensus       223 ~~~~~r~~~L~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~-~aGad~i~vg  293 (450)
T TIGR01302       223 EFDKERAEALVKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALI-DAGADGLRVG  293 (450)
T ss_pred             hhHHHHHHHHHHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHH-HhCCCEEEEC
Confidence            35677888999999999998643211    12347789999988 4899988 9999999999999 6999999865

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=96.11  E-value=0.23  Score=44.27  Aligned_cols=156  Identities=23%  Similarity=0.251  Sum_probs=88.7

Q ss_pred             HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHc
Q 020428           91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKT  169 (326)
Q Consensus        91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~  169 (326)
                      .+|...+..|+|.||+--  |..    +--|   -..|..+.+|++.+..  ..|+|..+.-. +++......+......
T Consensus        11 ~EA~~a~~~gaDiID~K~--P~~----GaLG---A~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a~~   79 (235)
T PF04476_consen   11 EEAEEALAGGADIIDLKN--PAE----GALG---ALFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAAAT   79 (235)
T ss_pred             HHHHHHHhCCCCEEEccC--CCC----CCCC---CCCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHHhc
Confidence            344444545899999831  211    2222   2456677777666533  38999988542 3444444444455568


Q ss_pred             CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeC--CC-----CCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          170 GVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANG--DV-----FEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nG--gI-----~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      |+|+|-|--. ....+  ....+.++.+.+.+     +..+++++  |-     .++-++.++..+.|++++|+=++.=.
T Consensus        80 GvdyvKvGl~-g~~~~--~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kd  156 (235)
T PF04476_consen   80 GVDYVKVGLF-GCKDY--DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKD  156 (235)
T ss_pred             CCCEEEEecC-CCCCH--HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCC
Confidence            9999987311 00000  01123333333322     34466554  22     14556667777899999999988666


Q ss_pred             CcccccccCCCCHHHHHHHHHHHHHhh
Q 020428          238 NASIFSSQGKLHWEDVKREYVRKSIFW  264 (326)
Q Consensus       238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~  264 (326)
                      ...+|..   .+ .+.+.+|++.+..+
T Consensus       157 g~~L~d~---~~-~~~L~~Fv~~ar~~  179 (235)
T PF04476_consen  157 GGSLFDH---LS-EEELAEFVAQARAH  179 (235)
T ss_pred             CCchhhc---CC-HHHHHHHHHHHHHc
Confidence            6666665   22 34556888888765

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea

Probab=96.10  E-value=0.26  Score=45.51  Aligned_cols=126  Identities=14%  Similarity=0.077  Sum_probs=83.4

Q ss_pred             CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHH
Q 020428           83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e  161 (326)
                      +.-|.+.+.+.++.+.+ |+++|=++.          ..|-...-..+.-.++++.+.+.++ +|.+-+. ..+..++++
T Consensus        15 g~iD~~~~~~li~~l~~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~   82 (279)
T cd00953          15 NKIDKEKFKKHCENLISKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIE   82 (279)
T ss_pred             CCcCHHHHHHHHHHHHHcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHH
Confidence            44588888888888766 999998864          2444445556666777777766654 3554443 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-.--...+...-.++++.+.+  ++||+ +     +|--.+++.+.++.+
T Consensus        83 ~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~  147 (279)
T cd00953          83 LARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK  147 (279)
T ss_pred             HHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence            99999999999998864311000011112345666776  78876 3     354567888888774

This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=96.05  E-value=0.21  Score=44.36  Aligned_cols=120  Identities=13%  Similarity=0.115  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CC----hHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KS----SQDT  159 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~----~~~~  159 (326)
                      ++++..+.++.+.. |..++.++                   .    .+.++++++.+++|+...++.. ++    ....
T Consensus        21 ~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~   77 (221)
T PRK01130         21 SPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT   77 (221)
T ss_pred             CHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence            46677777777766 77788763                   0    3567788887899987444411 00    0113


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+.++.+.++|+|.|++...... ...+....++++.+++..++|++.  ++.|.+++.++. ..|+|.+.++
T Consensus        78 ~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~-~~G~d~i~~~  146 (221)
T PRK01130         78 LKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQ-KLGFDFIGTT  146 (221)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHH-HcCCCEEEcC
Confidence            45688999999998887654211 001112245566665535777774  678999998877 6899999874

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=95.98  E-value=0.26  Score=45.67  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             CCHHHHHHHHHHhh-c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMVC-K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~~-~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      -|.+.+.+.++.+. . |+++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+.. .+..+++
T Consensus        18 iD~~~~~~~i~~l~~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai   86 (288)
T cd00954          18 INEDVLRAIVDYLIEKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQ   86 (288)
T ss_pred             CCHHHHHHHHHHHHhcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHH
Confidence            46777777777664 5 789988763          233333334566666676666555  4677776642 4678899


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEE-E-----eCCCCCHHHHHHHHH
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVI-A-----NGDVFEYDDFQRIKT  222 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~d~~~~l~  222 (326)
                      ++++.++++|+|++.+..-... .++...-+++++.|.+.+ ++||+ +     .|---+++.+.++.+
T Consensus        87 ~~a~~a~~~Gad~v~~~~P~y~-~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~  154 (288)
T cd00954          87 ELAKHAEELGYDAISAITPFYY-KFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE  154 (288)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCC-CCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence            9999999999999987542111 111122356677888888 89987 3     344557777777763

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion

Probab=95.97  E-value=0.11  Score=46.33  Aligned_cols=93  Identities=16%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             HHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          132 HDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       132 ~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                      .+.++++++.+  ++.+.+-...+|+.+++.++++.+++.++.+|-       + +..+.|++..+++++..++||.+.=
T Consensus        81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~L~~~~~~pIa~dE  152 (229)
T cd00308          81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIE-------E-PCAPDDLEGYAALRRRTGIPIAADE  152 (229)
T ss_pred             HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEE-------C-CCCccCHHHHHHHHhhCCCCEEeCC
Confidence            66778888776  456666666679999999999999998887762       2 2234478889999999999999966


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEec
Q 020428          210 DVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       210 gI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+.+.++..++++...+|.+++-
T Consensus       153 s~~~~~~~~~~~~~~~~d~~~~k  175 (229)
T cd00308         153 SVTTVDDALEALELGAVDILQIK  175 (229)
T ss_pred             CCCCHHHHHHHHHcCCCCEEecC
Confidence            78999999888865567877653

Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=95.97  E-value=0.035  Score=48.56  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=62.6

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      ++..=+|. .+.++..++++.+.+.|+..+-|+-|+       +.-.+.|+++++..+--+++.|.|.|.+++++++ +.
T Consensus         9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~-~a   79 (196)
T PF01081_consen    9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAI-AA   79 (196)
T ss_dssp             SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHH-HH
T ss_pred             CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHH-Hc
Confidence            44444553 567889999999999999999999875       2347889888887766689999999999999999 69


Q ss_pred             CCcEEEeccchhcCccccc
Q 020428          225 GASSVMAARGALWNASIFS  243 (326)
Q Consensus       225 Gad~VmiGr~~l~~P~lf~  243 (326)
                      ||+.++-=   -.||.+.+
T Consensus        80 GA~FivSP---~~~~~v~~   95 (196)
T PF01081_consen   80 GAQFIVSP---GFDPEVIE   95 (196)
T ss_dssp             T-SEEEES---S--HHHHH
T ss_pred             CCCEEECC---CCCHHHHH
Confidence            99987643   24555544

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.96  E-value=0.032  Score=55.76  Aligned_cols=73  Identities=18%  Similarity=0.237  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc-EEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIP-VIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .+..+.++.|.++|+|.|.|.  +..+..  ..-.+.++++++..+.+ .+..|.|.|+++++.++ ..|||++.||.|
T Consensus       241 ~~~~~ra~~Lv~aGvd~i~vd--~a~g~~--~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li-~aGAd~I~vg~g  314 (502)
T PRK07107        241 RDYAERVPALVEAGADVLCID--SSEGYS--EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA-EAGADFVKVGIG  314 (502)
T ss_pred             hhHHHHHHHHHHhCCCeEeec--Cccccc--HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHH-HcCCCEEEECCC
Confidence            467889999999999999986  222211  11267888999877643 46789999999999999 699999999754

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=95.96  E-value=0.29  Score=42.55  Aligned_cols=44  Identities=14%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             HHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          192 GEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       192 ~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +++.++++.. +.|+-..=||.++|++++.-+ - +|||++|+.+..
T Consensus       196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgs-v-aDGVvvGSkiv~  240 (268)
T KOG4175|consen  196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGS-V-ADGVVVGSKIVK  240 (268)
T ss_pred             HHHHHHHHhcCCCceeEeeccCCHHHHHhhhh-h-ccceEecHHHHH
Confidence            4567777777 799988889999999988873 3 999999998664

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=95.95  E-value=0.27  Score=45.62  Aligned_cols=123  Identities=16%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHhh--cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMVC--KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~~--~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      -|.+.+.+..+.+.  .|+++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+.. .+.++++
T Consensus        21 iD~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai   89 (293)
T PRK04147         21 IDEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQ   89 (293)
T ss_pred             cCHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHH
Confidence            46777777777765  4889988864          234433444566667777776665  4677776632 4678999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCc---CCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDP---AKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      ++++.+++.|+|++.+..-.    |..+   .-++++++|.+.+++||+ +|     |---+++.+.++.+
T Consensus        90 ~~a~~a~~~Gad~v~v~~P~----y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~  156 (293)
T PRK04147         90 ELAKYATELGYDAISAVTPF----YYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT  156 (293)
T ss_pred             HHHHHHHHcCCCEEEEeCCc----CCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence            99999999999999987431    2222   235567788888888976 43     44456777777653

>PLN02363 phosphoribosylanthranilate isomerase

Probab=95.95  E-value=1.2  Score=40.67  Aligned_cols=130  Identities=12%  Similarity=0.075  Sum_probs=75.1

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      ..+++...+.++.+  +.|.|.||..                .+++++.    .++..  +++.--++.. +..+..+.+
T Consensus       108 ~~~~~~I~~~~~~~--~ld~VQLHG~----------------e~~~~~~----~l~~~--~~iikai~v~-~~~~~~~~~  162 (256)
T PLN02363        108 DDDANTILRAADSS--DLELVQLHGN----------------GSRAAFS----RLVRE--RKVIYVLNAN-EDGKLLNVV  162 (256)
T ss_pred             CCCHHHHHHHHHhc--CCCEEEECCC----------------CCHHHHH----HhhcC--CcEEEEEEEC-chHHHHHHH
Confidence            44566665544422  7899999842                1233333    33322  4444333432 222222222


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      .......+|++.+....  +......||+.+..-.-....|++..|||. ++.+.++++..+..||=+.+|+=..|.+
T Consensus       163 ~~~~~~~~D~~LlDs~~--GGtG~t~DW~~l~~~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG~  237 (256)
T PLN02363        163 PEEDCHLADWILVDSAT--GGSGKGFNWQNFKLPSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDGI  237 (256)
T ss_pred             HhhccccCCEEEEeCCC--CCCCCccCHHHhcccccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCCc
Confidence            22222358998887642  233346689876421101256999999995 7888888877889999999997666653

>PRK02227 hypothetical protein; Provisional

Probab=95.94  E-value=0.64  Score=41.71  Aligned_cols=157  Identities=19%  Similarity=0.180  Sum_probs=91.6

Q ss_pred             HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHc
Q 020428           91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKT  169 (326)
Q Consensus        91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~  169 (326)
                      .+|...+..|+|.||+--  |       ..|+-=-+.|..+.+|+..+...  .|||..+.-. +++.+...-+..+...
T Consensus        11 eEA~~Al~~GaDiIDvK~--P-------~~GaLGA~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a~~   79 (238)
T PRK02227         11 EEALEALAGGADIIDVKN--P-------KEGSLGANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAAAT   79 (238)
T ss_pred             HHHHHHHhcCCCEEEccC--C-------CCCCCCCCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHHhh
Confidence            344444546899999831  2       22222245677888888777653  7999988642 3444555556666778


Q ss_pred             CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeC--CCC-----CHHHHHHHHHhcCCcEEEeccchhc
Q 020428          170 GVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANG--DVF-----EYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nG--gI~-----s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      |+|+|-|- ......  .....+.++.+.+.+     +..|++++  |-.     ++.++..+..+.|++++|+=++.=.
T Consensus        80 GvDyVKvG-l~~~~~--~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kd  156 (238)
T PRK02227         80 GADYVKVG-LYGGKT--AEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKD  156 (238)
T ss_pred             CCCEEEEc-CCCCCc--HHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCC
Confidence            99999762 111100  111234444333222     45566655  211     5667777777899999999776444


Q ss_pred             CcccccccCCCCHHHHHHHHHHHHHhhc
Q 020428          238 NASIFSSQGKLHWEDVKREYVRKSIFWE  265 (326)
Q Consensus       238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~~  265 (326)
                      .-.+|.-   .+ .+.+.+|++.+..++
T Consensus       157 g~~Lfd~---l~-~~~L~~Fv~~ar~~G  180 (238)
T PRK02227        157 GKSLFDH---MD-EEELAEFVAEARSHG  180 (238)
T ss_pred             CcchHhh---CC-HHHHHHHHHHHHHcc
Confidence            4445443   22 345568888877653

>PRK15440 L-rhamnonate dehydratase; Provisional

Probab=95.94  E-value=0.085  Score=51.22  Aligned_cols=96  Identities=6%  Similarity=0.066  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE
Q 020428          128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV  205 (326)
Q Consensus       128 p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV  205 (326)
                      ++.-.+.++++|+++  ++.+.+-...+|+..+++++++.+++.|+.++-       + +..+-|++..+++++.+++||
T Consensus       191 ~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiE-------E-Pl~~~d~~~~~~L~~~~~~~i  262 (394)
T PRK15440        191 LRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIE-------E-CLPPDDYWGYRELKRNAPAGM  262 (394)
T ss_pred             HHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCccee-------C-CCCcccHHHHHHHHHhCCCCC
Confidence            456677888999887  467777777789999999999999999988862       2 224557889999999987554


Q ss_pred             EEe--CCCCCHHHHHHHHHhcCCcEEEe
Q 020428          206 IAN--GDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       206 i~n--GgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ...  =.+.|..++.++++...+|.+++
T Consensus       263 ~ia~gE~~~~~~~~~~li~~~a~Divq~  290 (394)
T PRK15440        263 MVTSGEHEATLQGFRTLLEMGCIDIIQP  290 (394)
T ss_pred             ceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence            433  34678999999996555777754

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=95.94  E-value=0.32  Score=43.09  Aligned_cols=130  Identities=15%  Similarity=0.091  Sum_probs=83.1

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCC--EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d--~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .|+.+|+.+.+.+.+.+.|+.+.+.+.  .|.|    |...               .-.+.++.+++. ++++.+-.=  
T Consensus        52 ~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~V--  109 (211)
T cd00956          52 GPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTAI--  109 (211)
T ss_pred             CCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEEe--
Confidence            489999999999999999998876432  4455    3221               123345555444 555444321  


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHH---hcCCc-EEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          154 KSSQDTVELARRIEKTGVSALAVH-GRKVADRPRDPAKWGEIADIVA---ALSIP-VIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~---~~~iP-Vi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      .+    .+-+..+.++|+++|... ||..+....   -++.++++.+   ..++| -|...+++|++++.++. ..|||.
T Consensus       110 ~s----~~Qa~~Aa~AGA~yvsP~vgR~~~~g~d---g~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~-~~Gad~  181 (211)
T cd00956         110 FS----AAQALLAAKAGATYVSPFVGRIDDLGGD---GMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAA-LAGADA  181 (211)
T ss_pred             cC----HHHHHHHHHcCCCEEEEecChHhhcCCC---HHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHH-HcCCCE
Confidence            23    334566677899997754 665443322   2455555444   34544 45667899999999998 699999


Q ss_pred             EEeccch
Q 020428          229 VMAARGA  235 (326)
Q Consensus       229 VmiGr~~  235 (326)
                      |-+.=.+
T Consensus       182 vTv~~~v  188 (211)
T cd00956         182 ITLPPDV  188 (211)
T ss_pred             EEeCHHH
Confidence            9887443

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=95.93  E-value=0.14  Score=47.50  Aligned_cols=125  Identities=19%  Similarity=0.267  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |++++=++..          .|-...-..+.-.++++.+.+.+  ++||.+-+. ..+.+++++
T Consensus        19 id~~~~~~~i~~l~~~Gv~gl~~~Gs----------tGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~i~   87 (289)
T PF00701_consen   19 IDEDALKRLIDFLIEAGVDGLVVLGS----------TGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEAIE   87 (289)
T ss_dssp             B-HHHHHHHHHHHHHTTSSEEEESST----------TTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHHHH
Confidence            367788888887765 9999988642          33333334555566666666544  578888764 257889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..-.-. ..+...-.++++.|.+.+++||+ +|     |---|++.+.++.
T Consensus        88 ~a~~a~~~Gad~v~v~~P~~~-~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~  152 (289)
T PF00701_consen   88 LARHAQDAGADAVLVIPPYYF-KPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLA  152 (289)
T ss_dssp             HHHHHHHTT-SEEEEEESTSS-SCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHH
T ss_pred             HHHHHhhcCceEEEEeccccc-cchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHh
Confidence            999999999999987643111 11111124566778888888875 33     4445566666655

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=95.93  E-value=0.34  Score=45.11  Aligned_cols=104  Identities=16%  Similarity=0.219  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC--CcEEEEeecccC--C---CCCC--cCCHHHHHHHH
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG--VSALAVHGRKVA--D---RPRD--PAKWGEIADIV  198 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G--~d~i~vh~r~~~--~---~~~~--~~~~~~i~~i~  198 (326)
                      .+...+.+.......+.|+.+-+. |.+.++..+.++.+++++  +|+|.+.-....  +   .+.+  ..-.+.+++++
T Consensus        75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr  153 (300)
T TIGR01037        75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK  153 (300)
T ss_pred             HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence            334444444444445678888774 567889999999999874  999998532221  1   0111  11245677778


Q ss_pred             HhcCCcEEEe--CCCCCHHHHHHHHHhcCCcEEEec
Q 020428          199 AALSIPVIAN--GDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       199 ~~~~iPVi~n--GgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.+++||.+=  .++.+..++.+.+++.|+|++.+.
T Consensus       154 ~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~  189 (300)
T TIGR01037       154 DKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI  189 (300)
T ss_pred             HhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence            7788998744  344444555566668999999874

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=95.91  E-value=0.086  Score=46.50  Aligned_cols=81  Identities=20%  Similarity=0.373  Sum_probs=65.8

Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc-EEEeCCCCCHHHHHHHHH
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIP-VIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~d~~~~l~  222 (326)
                      .++..=+|. .+.++..++++.+.+.|+..|-+.-++       +...+.++.+++..+.+ +++.|.|.+.+++..++ 
T Consensus        10 ~~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~-   80 (206)
T PRK09140         10 LPLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLA-   80 (206)
T ss_pred             CCEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH-
Confidence            345555663 567899999999999999999997653       23456888998877654 78999999999999999 


Q ss_pred             hcCCcEEEecc
Q 020428          223 AAGASSVMAAR  233 (326)
Q Consensus       223 ~~Gad~VmiGr  233 (326)
                      ..||++++.+-
T Consensus        81 ~aGA~fivsp~   91 (206)
T PRK09140         81 DAGGRLIVTPN   91 (206)
T ss_pred             HcCCCEEECCC
Confidence            69999999973

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=95.88  E-value=0.061  Score=45.94  Aligned_cols=91  Identities=9%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             HHHHHHHHhhcc-cC-cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH----h-cCC
Q 020428          131 IHDILTMLKRNL-DV-PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA----A-LSI  203 (326)
Q Consensus       131 ~~~iv~~v~~~~-~~-pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~----~-~~i  203 (326)
                      +.+.++++++.. .. +|.|-..       ..+.+..+.++|+|.|.+...+          .+.++++.+    . .++
T Consensus        66 i~~av~~~~~~~~~~~~I~VEv~-------~~ee~~ea~~~g~d~I~lD~~~----------~~~~~~~v~~l~~~~~~v  128 (169)
T PF01729_consen   66 IEEAVKAARQAAPEKKKIEVEVE-------NLEEAEEALEAGADIIMLDNMS----------PEDLKEAVEELRELNPRV  128 (169)
T ss_dssp             HHHHHHHHHHHSTTTSEEEEEES-------SHHHHHHHHHTT-SEEEEES-C----------HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHhCCCCceEEEEcC-------CHHHHHHHHHhCCCEEEecCcC----------HHHHHHHHHHHhhcCCcE
Confidence            456666676655 23 3666663       2455666777999999987652          244444433    2 258


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      .+.++|||+ ++.+.++. .+|+|.+.+|.....-|+
T Consensus       129 ~ie~SGGI~-~~ni~~ya-~~gvD~isvg~~~~~a~~  163 (169)
T PF01729_consen  129 KIEASGGIT-LENIAEYA-KTGVDVISVGSLTHSAPP  163 (169)
T ss_dssp             EEEEESSSS-TTTHHHHH-HTT-SEEEECHHHHSBE-
T ss_pred             EEEEECCCC-HHHHHHHH-hcCCCEEEcChhhcCCcc
Confidence            889999995 78888888 699999999987665554

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=95.88  E-value=0.45  Score=41.28  Aligned_cols=129  Identities=16%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             EEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCCChH
Q 020428           79 VFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~~~~  157 (326)
                      ++-|=-.++++..+.++.+.++++.|+++.  |.-  .            ..-.+.++.+++. .+.|+.+-+... +..
T Consensus         4 ~~a~d~~~~~~~~~~~~~l~~~i~~ieig~--~~~--~------------~~g~~~i~~i~~~~~~~~i~~~~~v~-~~~   66 (202)
T cd04726           4 QVALDLLDLEEALELAKKVPDGVDIIEAGT--PLI--K------------SEGMEAVRALREAFPDKIIVADLKTA-DAG   66 (202)
T ss_pred             EEEEcCCCHHHHHHHHHHhhhcCCEEEcCC--HHH--H------------HhCHHHHHHHHHHCCCCEEEEEEEec-ccc
Confidence            344434568888888888877889999853  211  1            1114556777665 377877633221 111


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe-CCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN-GDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n-GgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                        ..+++.+.++|+|.+++|+....     ...-+.++.++ ..+++++.. =+..|++++.+++ ..|+|.|.++.
T Consensus        67 --~~~~~~~~~aGad~i~~h~~~~~-----~~~~~~i~~~~-~~g~~~~v~~~~~~t~~e~~~~~-~~~~d~v~~~~  134 (202)
T cd04726          67 --ALEAEMAFKAGADIVTVLGAAPL-----STIKKAVKAAK-KYGKEVQVDLIGVEDPEKRAKLL-KLGVDIVILHR  134 (202)
T ss_pred             --HHHHHHHHhcCCCEEEEEeeCCH-----HHHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHH-HCCCCEEEEcC
Confidence              24568889999999999986411     01123444444 457887764 6788999998866 57999998853

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=95.81  E-value=0.15  Score=48.69  Aligned_cols=43  Identities=16%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          188 PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       188 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ...|+.|+.|++..+.|||.-| |.|++|+.++. +.|+|+|.++
T Consensus       222 ~~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~-~~G~d~I~VS  264 (361)
T cd04736         222 SFNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCI-ELGADGVILS  264 (361)
T ss_pred             cCCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHH-HCCcCEEEEC
Confidence            4579999999999999999885 99999999999 6999999875

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.79  E-value=0.16  Score=44.97  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCC---cEEEeCCCCCHHHHHHHH
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSI---PVIANGDVFEYDDFQRIK  221 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~i---PVi~nGgI~s~~d~~~~l  221 (326)
                      ++..=+|. .+.++...+++.+.+.|+..+-|+-|+       +.-.+.|+++++..+-   -+++.|-|.|.+++++++
T Consensus        14 ~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~   85 (213)
T PRK06552         14 GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI   85 (213)
T ss_pred             CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence            45554663 577899999999999999999998774       3357889999887632   378999999999999999


Q ss_pred             HhcCCcEEE
Q 020428          222 TAAGASSVM  230 (326)
Q Consensus       222 ~~~Gad~Vm  230 (326)
                       +.||+.++
T Consensus        86 -~aGA~Fiv   93 (213)
T PRK06552         86 -LAGAQFIV   93 (213)
T ss_pred             -HcCCCEEE
Confidence             69999988

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.79  E-value=0.2  Score=44.33  Aligned_cols=88  Identities=24%  Similarity=0.332  Sum_probs=68.3

Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      .++..=+| +.+.++..++++.+.+.|++.|-|.-++       +.-.+.|+++++..+--+++.|-|.|.++++..+ +
T Consensus        15 ~~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~-------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~-~   85 (212)
T PRK05718         15 GPVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLRT-------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAI-E   85 (212)
T ss_pred             CCEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecCC-------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHH-H
Confidence            34555566 4678899999999999999999998543       3346788999887665689999999999999999 6


Q ss_pred             cCCcEEEeccchhcCccccc
Q 020428          224 AGASSVMAARGALWNASIFS  243 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf~  243 (326)
                      .||+.++.=   -.+|.+.+
T Consensus        86 aGA~FivsP---~~~~~vi~  102 (212)
T PRK05718         86 AGAQFIVSP---GLTPPLLK  102 (212)
T ss_pred             cCCCEEECC---CCCHHHHH
Confidence            999988753   23555544

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=95.77  E-value=0.16  Score=45.91  Aligned_cols=127  Identities=15%  Similarity=0.213  Sum_probs=81.2

Q ss_pred             HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCC--ChHHHHHHHHHHHHc
Q 020428           94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLK--SSQDTVELARRIEKT  169 (326)
Q Consensus        94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~--~~~~~~e~a~~l~~~  169 (326)
                      |+++++ |+|.|=+.-....   ...|+-....-..+.+...++++++.+. .||++-+-.|.  ++++..+.++.+.++
T Consensus        25 A~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a  101 (240)
T cd06556          25 AKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA  101 (240)
T ss_pred             HHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence            344444 8888877532111   1112222223356778888888888875 79999998863  447888999999999


Q ss_pred             CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC---------------CHHHHHHHH------HhcCCcE
Q 020428          170 GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF---------------EYDDFQRIK------TAAGASS  228 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~---------------s~~d~~~~l------~~~Gad~  228 (326)
                      |+++|++-+..        ...+.++.+++. .+||++==|..               +.+++++++      ++.|||+
T Consensus       102 Ga~gv~iED~~--------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~  172 (240)
T cd06556         102 GAAGVKIEGGE--------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADL  172 (240)
T ss_pred             CCcEEEEcCcH--------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCE
Confidence            99999997642        123345555544 58888765652               223333333      3689999


Q ss_pred             EEec
Q 020428          229 VMAA  232 (326)
Q Consensus       229 VmiG  232 (326)
                      +.+=
T Consensus       173 i~~e  176 (240)
T cd06556         173 IVME  176 (240)
T ss_pred             EEEc
Confidence            9884

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.77  E-value=0.1  Score=45.24  Aligned_cols=80  Identities=21%  Similarity=0.360  Sum_probs=64.1

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      |+..=+| +.+.++..++++.+.+.|++.|.+.-++       +...+.++.+++..+-..++.|.|.+.+++..++ ..
T Consensus         5 ~~~~i~r-~~~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~-~~   75 (190)
T cd00452           5 PLVAVLR-GDDAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFPEALIGAGTVLTPEQADAAI-AA   75 (190)
T ss_pred             cEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH-Hc
Confidence            4444455 3567889999999999999999997553       2256688888887765578999999999999999 69


Q ss_pred             CCcEEEecc
Q 020428          225 GASSVMAAR  233 (326)
Q Consensus       225 Gad~VmiGr  233 (326)
                      |+++++.+-
T Consensus        76 Ga~~i~~p~   84 (190)
T cd00452          76 GAQFIVSPG   84 (190)
T ss_pred             CCCEEEcCC
Confidence            999998773

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=95.77  E-value=0.098  Score=50.09  Aligned_cols=88  Identities=26%  Similarity=0.360  Sum_probs=65.5

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEee-------ccc-----C---CC-----------------------
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG-------RKV-----A---DR-----------------------  184 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~-------r~~-----~---~~-----------------------  184 (326)
                      ..|...-+-...+.+.+.++++.++++|+++|.||-       |.+     -   ..                       
T Consensus       109 ~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~  188 (356)
T PF01070_consen  109 GGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENN  188 (356)
T ss_dssp             TSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG----
T ss_pred             cCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccccc
Confidence            366666665556778899999999999999999871       100     0   00                       


Q ss_pred             -------------------CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          185 -------------------PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       185 -------------------~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                                         .....+|+.|+.+++..++|||.=| |.+++|+.++. +.|++++.|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKg-v~~~~da~~~~-~~G~~~i~vs  253 (356)
T PF01070_consen  189 EAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKG-VLSPEDAKRAV-DAGVDGIDVS  253 (356)
T ss_dssp             -CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEE-E-SHHHHHHHH-HTT-SEEEEE
T ss_pred             ccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEe-cccHHHHHHHH-hcCCCEEEec
Confidence                               0123579999999999999999876 58999999999 6999999987

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=95.72  E-value=0.34  Score=42.35  Aligned_cols=126  Identities=18%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             EEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEE--EEecCCCC
Q 020428           79 VFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVT--CKIRLLKS  155 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~--vK~r~g~~  155 (326)
                      ++-|=..++++..+.++.+..+.+.||+....                ....-.++++.+++.. +..+.  +|+-   +
T Consensus         3 ~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l----------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~---d   63 (206)
T TIGR03128         3 QLALDLLDIEEALELAEKVADYVDIIEIGTPL----------------IKNEGIEAVKEMKEAFPDRKVLADLKTM---D   63 (206)
T ss_pred             EEEecCCCHHHHHHHHHHcccCeeEEEeCCHH----------------HHHhCHHHHHHHHHHCCCCEEEEEEeec---c
Confidence            34444678899999999884488999984211                1122235566666653 33343  4443   2


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhcCCcEEEe-CCCCC-HHHHHHHHHhcCCcEEEec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAALSIPVIAN-GDVFE-YDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~~iPVi~n-GgI~s-~~d~~~~l~~~Gad~VmiG  232 (326)
                      ..+  ..++.+.++|+|+|++|+-..      +.+ .+.+..++ ..+++++.. -+..+ .+++..+. +.|+|.|.+.
T Consensus        64 ~~~--~~~~~~~~~Gad~i~vh~~~~------~~~~~~~i~~~~-~~g~~~~~~~~~~~t~~~~~~~~~-~~g~d~v~~~  133 (206)
T TIGR03128        64 AGE--YEAEQAFAAGADIVTVLGVAD------DATIKGAVKAAK-KHGKEVQVDLINVKDKVKRAKELK-ELGADYIGVH  133 (206)
T ss_pred             chH--HHHHHHHHcCCCEEEEeccCC------HHHHHHHHHHHH-HcCCEEEEEecCCCChHHHHHHHH-HcCCCEEEEc
Confidence            222  247888999999999997631      112 23444444 468888764 24444 47777777 5799999774


Q ss_pred             c
Q 020428          233 R  233 (326)
Q Consensus       233 r  233 (326)
                      .
T Consensus       134 p  134 (206)
T TIGR03128       134 T  134 (206)
T ss_pred             C
Confidence            3

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PLN02417 dihydrodipicolinate synthase

Probab=95.68  E-value=0.29  Score=45.24  Aligned_cols=120  Identities=10%  Similarity=0.024  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~   87 (280)
T PLN02417         19 FDLEAYDSLVNMQIENGAEGLIVGG----------TTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREAIH   87 (280)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHHHH
Confidence            467788888887665 999998864          234444445666666777666655  478777664 246789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-E-----eCCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-A-----NGDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~-----nGgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-.    |..+.   -.++++.+.+..  ||+ +     .|--.+++.+.++.
T Consensus        88 ~a~~a~~~Gadav~~~~P~----y~~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~  150 (280)
T PLN02417         88 ATEQGFAVGMHAALHINPY----YGKTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIA  150 (280)
T ss_pred             HHHHHHHcCCCEEEEcCCc----cCCCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHh
Confidence            9999999999999986432    22221   234455666653  764 3     24334566666665

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=95.67  E-value=0.34  Score=44.01  Aligned_cols=146  Identities=15%  Similarity=0.096  Sum_probs=97.1

Q ss_pred             ccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428           71 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      ..+.+-|++--+  .++++...+++.    +|.+.|              |+.++++.++    ++++.+ ++.||.+|=
T Consensus        77 k~~~GlpvvTeV--~~~~~~~~v~~~----~DilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKr  131 (264)
T PRK05198         77 KETFGVPVLTDV--HEPEQAAPVAEV----VDVLQI--------------PAFLCRQTDL----LVAAAK-TGKVVNIKK  131 (264)
T ss_pred             HHHHCCceEEEe--CCHHHHHHHHhh----CcEEEE--------------CchhcchHHH----HHHHhc-cCCeEEecC
Confidence            344566777655  355555555543    577776              4566777644    555543 489999999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-CcCCHHHHHHHHHhcCCcEEEe---------------CCCCC-
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAALSIPVIAN---------------GDVFE-  213 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~i~~~~~iPVi~n---------------GgI~s-  213 (326)
                      ....++++..-.++.+.+.|-.-|.+.-|-..-.|. -..|+..+..+++ .++|||.-               ||-++ 
T Consensus       132 G~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~-~~lPVi~DpSHsvq~pg~~~~~s~G~r~~  210 (264)
T PRK05198        132 GQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRE-TGAPVIFDATHSVQLPGGQGGSSGGQREF  210 (264)
T ss_pred             CCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhh-CCCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence            888889999999999999999999987775432333 2357888887776 56999852               44433 


Q ss_pred             -HHHHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428          214 -YDDFQRIKTAAGASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       214 -~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~  245 (326)
                       +.-+...+ ..||||+|+=.  --||.-.-.+
T Consensus       211 v~~la~AAv-A~GadGl~iEv--HpdP~~AlsD  240 (264)
T PRK05198        211 VPVLARAAV-AVGVAGLFIET--HPDPDNALSD  240 (264)
T ss_pred             HHHHHHHHH-HcCCCEEEEEe--CCCccccCCC
Confidence             12234455 58999999863  3366554443

>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []

Probab=95.59  E-value=0.019  Score=48.72  Aligned_cols=113  Identities=22%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428           94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS  172 (326)
Q Consensus        94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d  172 (326)
                      |+++++ |+-.|-.==  ..|.-.+...|-+-|.||..+.+|.++    +.+||..|.|+|...     .|+.|+..|+|
T Consensus        27 AkIAE~AGA~AVMaLe--rvPadiR~~GGVaRMsDP~~I~eI~~a----VsIPVMAK~RIGHfv-----EAqiLealgVD   95 (208)
T PF01680_consen   27 AKIAEEAGAVAVMALE--RVPADIRAAGGVARMSDPKMIKEIMDA----VSIPVMAKVRIGHFV-----EAQILEALGVD   95 (208)
T ss_dssp             HHHHHHHT-SEEEE-S--S-HHHHHHTTS---S--HHHHHHHHHH-----SSEEEEEEETT-HH-----HHHHHHHTT-S
T ss_pred             HHHHHHhCCeEEEEec--cCCHhHHhcCCccccCCHHHHHHHHHh----eEeceeeccccceee-----hhhhHHHhCCc
Confidence            444444 654442211  233334566788899999887777654    589999999998533     38999999999


Q ss_pred             EEEEeecccCCCCCCcCCHHHHHHH-HHhcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          173 ALAVHGRKVADRPRDPAKWGEIADI-VAALSIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       173 ~i~vh~r~~~~~~~~~~~~~~i~~i-~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      +|.=+--      ..|+|.+.  .| +...++|.+.  |-++.-.+.+-+ .-||..
T Consensus        96 ~IDESEV------LTpAD~~~--HI~K~~F~vPFVc--GarnLGEALRRI-~EGAaM  141 (208)
T PF01680_consen   96 YIDESEV------LTPADEEN--HIDKHNFKVPFVC--GARNLGEALRRI-AEGAAM  141 (208)
T ss_dssp             EEEEETT------S--S-SS------GGG-SS-EEE--EESSHHHHHHHH-HTT-SE
T ss_pred             eeccccc------cccccccc--cccchhCCCCeEe--cCCCHHHHHhhH-Hhhhhh
Confidence            9975432      12333322  22 2346888653  345666666666 356553

Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=95.56  E-value=0.31  Score=44.64  Aligned_cols=146  Identities=14%  Similarity=0.070  Sum_probs=95.0

Q ss_pred             cCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428           72 HQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      .+.+-|++--+  .++++...+++.    +|.+.|              |+.++.+.++    ++++. .++.||-+|=.
T Consensus        84 ~~~glpvvTeV--~~~~q~~~vae~----~DilQI--------------gAr~~rqtdL----L~a~~-~tgkpV~lKkG  138 (290)
T PLN03033         84 VAYDLPIVTDV--HESSQCEAVGKV----ADIIQI--------------PAFLCRQTDL----LVAAA-KTGKIINIKKG  138 (290)
T ss_pred             HHHCCceEEee--CCHHHHHHHHhh----CcEEee--------------CcHHHHHHHH----HHHHH-ccCCeEEeCCC
Confidence            34455666555  355555555443    477776              3455555444    44444 35899999998


Q ss_pred             CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-CcCCHHHHHHHHHhcCCcEEE----------------e----CC
Q 020428          152 LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIVAALSIPVIA----------------N----GD  210 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~i~~~~~iPVi~----------------n----Gg  210 (326)
                      ...++++..-.++.+...|-+-|.+.-|-..-.|. -..|+..+..+++ ..+|||.                .    ||
T Consensus       139 q~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~-~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G  217 (290)
T PLN03033        139 QFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADITHSLQQPAGKKLDGGGVASGG  217 (290)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHh-cCCCEEEeCCccccCCCcccccccCCCCCC
Confidence            88899999999999999999999988775433333 2467888887775 7899984                1    23


Q ss_pred             CCC--HHHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428          211 VFE--YDDFQRIKTAAGASSVMAARGALWNASIFSSQG  246 (326)
Q Consensus       211 I~s--~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~  246 (326)
                      -+.  +.-+...+ ..|+||+|+=.  --||.-.-.++
T Consensus       218 ~Re~V~~larAAv-A~GaDGlfiEv--HpdP~~AlsDg  252 (290)
T PLN03033        218 LRELIPCIARTAV-AVGVDGIFMEV--HDDPLSAPVDG  252 (290)
T ss_pred             CHHHHHHHHHHHH-HhCCCEEEEEe--cCCccccCCCc
Confidence            322  12234445 57999999863  34666554443

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=95.55  E-value=0.62  Score=44.75  Aligned_cols=141  Identities=11%  Similarity=0.124  Sum_probs=91.0

Q ss_pred             CCCcEEEEEC---CCCHHHHHHHHHHhhc-CCCEEEE--ccCCCccccccccccccccCChHHHHHHHHHHhhccc--Cc
Q 020428           74 ERNHVVFQMG---TSDAVRALTAAKMVCK-DVAAIDI--NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VP  145 (326)
Q Consensus        74 ~~~p~~vQl~---g~~~~~~~~aa~~~~~-~~d~idl--N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~p  145 (326)
                      .+.|++..+.   |-+++.+++.+..+.. |+|.|--  |.+.+.-        +.+.++-+.+.+.+++..+.++  ++
T Consensus       124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~~  195 (364)
T cd08210         124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRTL  195 (364)
T ss_pred             CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcce
Confidence            3457776653   8899999999988877 8898832  3332211        1223344555566666665554  45


Q ss_pred             EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEe----CCCC-------C
Q 020428          146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIAN----GDVF-------E  213 (326)
Q Consensus       146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~n----GgI~-------s  213 (326)
                      +.+-+.  -+..+..+.++.++++|++++.+..-+.        -|..+..+++... +||.+-    |-+.       .
T Consensus       196 y~~Nit--a~~~em~~ra~~a~~~Ga~~vMv~~~~~--------G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~  265 (364)
T cd08210         196 YAPNVT--GPPTQLLERARFAKEAGAGGVLIAPGLT--------GLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISH  265 (364)
T ss_pred             EEEecC--CCHHHHHHHHHHHHHcCCCEEEeecccc--------hHHHHHHHHhcCCCcEEEEccccccccccCCCcccH
Confidence            555554  3356889999999999999998864421        2556777777777 888754    2222       1


Q ss_pred             HHHHHHHHHhcCCcEEEec
Q 020428          214 YDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       214 ~~d~~~~l~~~Gad~VmiG  232 (326)
                      .--..++.+..|+|.++.+
T Consensus       266 ~~~~~kl~RlaGad~~~~~  284 (364)
T cd08210         266 ALLFGTLFRLAGADAVIFP  284 (364)
T ss_pred             HHHHHHHHHHhCCCEEEeC
Confidence            2236666767899988665

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>TIGR00284 dihydropteroate synthase-related protein

Probab=95.51  E-value=0.21  Score=49.86  Aligned_cols=51  Identities=18%  Similarity=0.262  Sum_probs=37.4

Q ss_pred             HHHH-HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428           88 VRAL-TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        88 ~~~~-~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      +... +|.+++.+|+|.||||++...+             .++.+..+|+++++.++.|||+-..
T Consensus       165 ~~i~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT~  216 (499)
T TIGR00284       165 DGIEGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADTP  216 (499)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeCC
Confidence            4434 4444455699999999876533             3457889999999888899999764

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III

Probab=95.48  E-value=0.57  Score=45.65  Aligned_cols=144  Identities=9%  Similarity=0.073  Sum_probs=93.9

Q ss_pred             CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      .+.|++..+.    |-+|+++++.+..+.. |.|.|  |=|+..|.-        +-+.++-..+.+.+++..+.++...
T Consensus       142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~  213 (412)
T TIGR03326       142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPF--------NRFEERVEKLYKVRDKVEAETGERK  213 (412)
T ss_pred             CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHhCCcc
Confidence            3468887774    7789999999988776 77877  223321110        1122344455555555556666554


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH---hcCCcEEE------------eCCC
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA---ALSIPVIA------------NGDV  211 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~------------nGgI  211 (326)
                      ..=..+-.+.++..+-++.+.+.|+..+.+..-+.        -|..+..+++   ..++||.+            .-||
T Consensus       214 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gi  285 (412)
T TIGR03326       214 EYLANITAPVREMERRAELVADLGGQYVMVDVVVC--------GWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGI  285 (412)
T ss_pred             eEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeecc--------chHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcC
Confidence            44344334467888899999999999998875532        2556666665   56788876            2255


Q ss_pred             CCHHHHHHHHHhcCCcEEEeccc
Q 020428          212 FEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       212 ~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .. .-..++.+..|+|.+.+++.
T Consensus       286 s~-~vl~kl~RLaGaD~~~~~t~  307 (412)
T TIGR03326       286 SM-FALAKLYRLIGVDQLHTGTA  307 (412)
T ss_pred             cH-HHHHHHHHHcCCCeeeeCCC
Confidence            54 44777888899999999853

Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.48  E-value=0.16  Score=47.09  Aligned_cols=86  Identities=8%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEE
Q 020428          132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIA  207 (326)
Q Consensus       132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~  207 (326)
                      .+.++.+++...  .+|.|-.       ++.+.+..+.++|+|.|.+...+.          +.+++..+.+  ++.+.+
T Consensus       184 ~~av~~~r~~~~~~~kIeVEv-------~tleea~~a~~agaDiImLDnmsp----------e~l~~av~~~~~~~~lea  246 (290)
T PRK06559        184 QKAIAQARAYAPFVKMVEVEV-------ESLAAAEEAAAAGADIIMLDNMSL----------EQIEQAITLIAGRSRIEC  246 (290)
T ss_pred             HHHHHHHHHhCCCCCeEEEEC-------CCHHHHHHHHHcCCCEEEECCCCH----------HHHHHHHHHhcCceEEEE
Confidence            445555665543  4455544       345666777789999999976642          3333333322  577899


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +|||+ .+.+.++. .+|+|.+.+|.-..
T Consensus       247 SGGI~-~~ni~~yA-~tGVD~Is~galth  273 (290)
T PRK06559        247 SGNID-MTTISRFR-GLAIDYVSSGSLTH  273 (290)
T ss_pred             ECCCC-HHHHHHHH-hcCCCEEEeCcccc
Confidence            99995 88888888 69999999997544

>PRK05105 O-succinylbenzoate synthase; Provisional

Probab=95.45  E-value=0.6  Score=44.03  Aligned_cols=122  Identities=10%  Similarity=0.069  Sum_probs=80.3

Q ss_pred             ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHH
Q 020428           82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~  160 (326)
                      |...+++.+.+.++.+ +||..+-+..|-               .+++.-.+.++++++.+ +..+.+-..-+|+.+++.
T Consensus       111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~  174 (322)
T PRK05105        111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ  174 (322)
T ss_pred             eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence            3345677776666655 688777765441               24455566777777765 233444444469999999


Q ss_pred             HHHHHHHH---cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          161 ELARRIEK---TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       161 e~a~~l~~---~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++++.+++   .++.+|-       |..   .+++...++++.+++||.+.=.+.++++ ...+ ..++|.|++
T Consensus       175 ~~~~~l~~~~~~~i~~iE-------qP~---~~~~~~~~l~~~~~~PIa~DEs~~~~~~-~~~~-~~~~d~i~i  236 (322)
T PRK05105        175 QFAKYVPPDYRHRIAFLE-------EPC---KTPDDSRAFARATGIAIAWDESLREPDF-QFEA-EPGVRAIVI  236 (322)
T ss_pred             HHHHHhhhhcCCCccEEE-------CCC---CCHHHHHHHHHhCCCCEEECCCCCchhh-hhhh-cCCCCEEEE
Confidence            99999998   7887762       211   1245568888899999998888888864 3333 356776643

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=95.44  E-value=0.28  Score=45.43  Aligned_cols=106  Identities=18%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC-----CC---CcCC-HHHHHHH
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR-----PR---DPAK-WGEIADI  197 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~-----~~---~~~~-~~~i~~i  197 (326)
                      ..+.+.+.++.|...+++||++-.-.|.++.+..+.++.+.++|+.+|++-..+...+     ..   .-.. -+.+.+|
T Consensus        62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI  141 (285)
T TIGR02320        62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI  141 (285)
T ss_pred             CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence            3455666788888888999999998886778888999999999999999954432110     01   0111 2333333


Q ss_pred             H---Hh---cCCcEEEeCCC----CCHHHHHHH---HHhcCCcEEEec
Q 020428          198 V---AA---LSIPVIANGDV----FEYDDFQRI---KTAAGASSVMAA  232 (326)
Q Consensus       198 ~---~~---~~iPVi~nGgI----~s~~d~~~~---l~~~Gad~VmiG  232 (326)
                      +   +.   .+++|++-=|.    ...+++.+-   ..+.|||+|++=
T Consensus       142 ~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~  189 (285)
T TIGR02320       142 RAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH  189 (285)
T ss_pred             HHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence            3   32   24677766222    134443322   236899999984

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=95.42  E-value=0.32  Score=44.29  Aligned_cols=127  Identities=19%  Similarity=0.229  Sum_probs=75.4

Q ss_pred             HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc-EEEEecCC---CChHHHHHHHH-HH
Q 020428           93 AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP-VTCKIRLL---KSSQDTVELAR-RI  166 (326)
Q Consensus        93 aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p-v~vK~r~g---~~~~~~~e~a~-~l  166 (326)
                      .|+++.+ |+|.|=.  |...... .-|+-....-..+.+...+++++..++.| |++-+.-|   .++++..+.+. .+
T Consensus        24 sA~l~e~aG~d~i~v--Gds~~~~-~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~  100 (254)
T cd06557          24 TAKLADEAGVDVILV--GDSLGMV-VLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM  100 (254)
T ss_pred             HHHHHHHcCCCEEEE--CHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence            3445555 8998843  3222211 12333334456678888888888888889 77777533   34666666654 55


Q ss_pred             HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-----------EeCCCC----CHHHHHHHH------HhcC
Q 020428          167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-----------ANGDVF----EYDDFQRIK------TAAG  225 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-----------~nGgI~----s~~d~~~~l------~~~G  225 (326)
                      +++|+++|.+-+..        ...+.|+.+.+ .++||+           ..||..    |.+.+++++      ++.|
T Consensus       101 ~~aGa~aVkiEd~~--------~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AG  171 (254)
T cd06557         101 KEAGADAVKLEGGA--------EVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAG  171 (254)
T ss_pred             HHhCCeEEEEcCcH--------HHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCC
Confidence            55999999997641        11233444442 479988           556542    443333332      3689


Q ss_pred             CcEEEe
Q 020428          226 ASSVMA  231 (326)
Q Consensus       226 ad~Vmi  231 (326)
                      |+++.+
T Consensus       172 A~~i~l  177 (254)
T cd06557         172 AFALVL  177 (254)
T ss_pred             CCEEEE
Confidence            998865

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=95.42  E-value=0.24  Score=43.50  Aligned_cols=117  Identities=21%  Similarity=0.200  Sum_probs=81.0

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      .|++.=|-+.++++....++.+.+ |++.|||.+-.|..                  .+.++++++...   .+-+..| 
T Consensus        13 ~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a------------------~e~I~~l~~~~p---~~lIGAG-   70 (211)
T COG0800          13 QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAA------------------LEAIRALAKEFP---EALIGAG-   70 (211)
T ss_pred             CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCH------------------HHHHHHHHHhCc---ccEEccc-
Confidence            377877889999999999998887 89999998877754                  456667766543   2222222 


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                       +--..+-++.+.++|+++++-          ...+-+.++. +...++|++  =|+.|+.++...+ +.|++.+
T Consensus        71 -TVL~~~q~~~a~~aGa~fiVs----------P~~~~ev~~~-a~~~~ip~~--PG~~TptEi~~Al-e~G~~~l  130 (211)
T COG0800          71 -TVLNPEQARQAIAAGAQFIVS----------PGLNPEVAKA-ANRYGIPYI--PGVATPTEIMAAL-ELGASAL  130 (211)
T ss_pred             -cccCHHHHHHHHHcCCCEEEC----------CCCCHHHHHH-HHhCCCccc--CCCCCHHHHHHHH-HcChhhe
Confidence             111223467788899998742          2234455444 445578875  5899999999999 5888765

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=95.39  E-value=0.22  Score=47.22  Aligned_cols=149  Identities=8%  Similarity=0.002  Sum_probs=96.4

Q ss_pred             CCCcEEEEE-CCCC--HHHHHHHHHHh----h----cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc
Q 020428           74 ERNHVVFQM-GTSD--AVRALTAAKMV----C----KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL  142 (326)
Q Consensus        74 ~~~p~~vQl-~g~~--~~~~~~aa~~~----~----~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~  142 (326)
                      ...|+++.| .|.+  -+...++++.-    .    .||..|-+.           +..-.+..|-+..+++++..... 
T Consensus        91 ~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiD-----------gS~lpfEeNI~~TkevVe~Ah~~-  158 (350)
T PRK09197         91 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMID-----------LSEEPLEENIEICSKYLERMAKA-  158 (350)
T ss_pred             CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEee-----------CCCCCHHHHHHHHHHHHHHHHHc-
Confidence            456999999 5656  44444444321    1    136555543           22233556677777777776643 


Q ss_pred             cCcEEEEecC--C----C----C-----hHHHHHHHHHHHHcCC----cEEEEeecccCCCCC-C--cCCHHHHHHHHHh
Q 020428          143 DVPVTCKIRL--L----K----S-----SQDTVELARRIEKTGV----SALAVHGRKVADRPR-D--PAKWGEIADIVAA  200 (326)
Q Consensus       143 ~~pv~vK~r~--g----~----~-----~~~~~e~a~~l~~~G~----d~i~vh~r~~~~~~~-~--~~~~~~i~~i~~~  200 (326)
                      +++|-.-+..  |    .    .     ..++.+..+.+++.|+    |.+.|.-.|..+.|. +  ..|++.+++|.+.
T Consensus       159 GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~  238 (350)
T PRK09197        159 GMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEY  238 (350)
T ss_pred             CCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHH
Confidence            6666554432  1    1    0     0134455555667787    999887777776665 2  3589999999999


Q ss_pred             c---------CCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428          201 L---------SIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       201 ~---------~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +         ++|++.-||=..+ +++++++ ..|+.-|=|++.+
T Consensus       239 v~~~~~~~~~~vPLVLHGgSGipde~i~~ai-~~GI~KINi~T~l  282 (350)
T PRK09197        239 VSKKFGLPAKPFDFVFHGGSGSTLEEIREAV-SYGVVKMNIDTDT  282 (350)
T ss_pred             HHHhhCCCCCCCCEEEeCCCCCCHHHHHHHH-HCCCeeEEeCcHH
Confidence            8         8999988877665 7778888 6899888888764

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=95.38  E-value=0.041  Score=48.14  Aligned_cols=74  Identities=16%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .+..+.+.+.|+..|-|.+|.-.   +-..|+....++.+.+  ++-+++-.||+|++|+.... ..|+.+|.+|..++.
T Consensus       196 ~eEm~raleiGakvvGvNNRnL~---sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q-~~GV~avLVGEslmk  271 (289)
T KOG4201|consen  196 EEEMQRALEIGAKVVGVNNRNLH---SFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQ-KAGVKAVLVGESLMK  271 (289)
T ss_pred             HHHHHHHHHhCcEEEeecCCccc---eeeechhhHHHHHhhCccceEEEeccCCCCHHHHHHHH-HcCceEEEecHHHHh
Confidence            34445555569988888888544   2245666677777765  45577888999999999988 699999999999886

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=95.38  E-value=0.88  Score=43.08  Aligned_cols=111  Identities=13%  Similarity=0.199  Sum_probs=74.0

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCc---EEEEeecccCCCCCCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS---ALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d---~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                      -||.-+.+..++..+    .+ .+.||.++... .+.++..+.++.+.+.|..   .+.+|.-+.-.......|+..|..
T Consensus       115 IaS~~~~n~pLL~~~----A~-~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~  188 (329)
T TIGR03569       115 IPSGEITNAPLLKKI----AR-FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDT  188 (329)
T ss_pred             ECcccccCHHHHHHH----Hh-cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHH
Confidence            345556777665554    33 48999999987 4677888888888899985   666786543333334578999999


Q ss_pred             HHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          197 IVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       197 i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +++..++||.+++--....-..... ..||+  +|=+-+--+.
T Consensus       189 Lk~~f~~pVG~SdHt~G~~~~~aAv-alGA~--iIEkH~tldk  228 (329)
T TIGR03569       189 LKEAFDLPVGYSDHTLGIEAPIAAV-ALGAT--VIEKHFTLDK  228 (329)
T ss_pred             HHHHhCCCEEECCCCccHHHHHHHH-HcCCC--EEEeCCChhh
Confidence            9999999999875443334444444 46777  4444433333

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=95.35  E-value=0.51  Score=45.91  Aligned_cols=144  Identities=10%  Similarity=0.102  Sum_probs=95.9

Q ss_pred             CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      .+.|++..+.    |-+|+++++.+..+.. |.|.|  |=|++.|.-        +-+.++-+.+.+.++...+.++...
T Consensus       141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~  212 (406)
T cd08207         141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPY--------SPLDERVRAVMRVINDHAQRTGRKV  212 (406)
T ss_pred             CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence            3468888774    7789999999988776 77776  223332211        1122344455555555556666654


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE----EeC--------CCCCH
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI----ANG--------DVFEY  214 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi----~nG--------gI~s~  214 (326)
                      ..-..+-.+.++..+-++.+.+.|++.+.+..-+        .-|..+..+++..++||.    +.|        ||.. 
T Consensus       213 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis~-  283 (406)
T cd08207         213 MYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNS--------VGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGISF-  283 (406)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccc--------cchHHHHHHHhcCCceEEECCCcceecccCCCCCCcH-
Confidence            4444443447788888999999999998886542        236778888888889987    344        3443 


Q ss_pred             HHHHHHHHhcCCcEEEeccc
Q 020428          215 DDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       215 ~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .-+.++.+..|+|.+.++.-
T Consensus       284 ~vl~kl~RLaGaD~~~~~~~  303 (406)
T cd08207         284 QAYQKLWRLAGVDHLHVNGL  303 (406)
T ss_pred             HHHHHHHHHcCCCccccCCC
Confidence            44777888899999999863

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=95.28  E-value=0.45  Score=41.12  Aligned_cols=144  Identities=11%  Similarity=0.109  Sum_probs=80.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEc--cCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDIN--MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN--~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .+..+|..+|-..+..-++.+.. |+|++-+.  =|.=++             |.-+=.-+|+++|+.++.+-..-+-+ 
T Consensus         6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVp-------------NiT~G~pvV~slR~~~~~~~ffD~Hm-   71 (224)
T KOG3111|consen    6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVP-------------NITFGPPVVESLRKHTGADPFFDVHM-   71 (224)
T ss_pred             eechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccC-------------CcccchHHHHHHHhccCCCcceeEEE-
Confidence            45667776776555555555544 89876543  222222             22222345777777665552222211 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRDP  188 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~~  188 (326)
                       -.+++.+++..+.++|++.+++|.--..                                             .++.|.
T Consensus        72 -MV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQ  150 (224)
T KOG3111|consen   72 -MVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQ  150 (224)
T ss_pred             -eecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchh
Confidence             1124455666666777777776632110                                             111111


Q ss_pred             C----CHHHHHHHHHhcCCcEE-EeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          189 A----KWGEIADIVAALSIPVI-ANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       189 ~----~~~~i~~i~~~~~iPVi-~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .    -..-++.+++...-+.| .-||+. ++.+.++. +.||+.++.|++.+.
T Consensus       151 kFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a-~AGAN~iVaGsavf~  202 (224)
T KOG3111|consen  151 KFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAA-EAGANMIVAGSAVFG  202 (224)
T ss_pred             hhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHH-HcCCCEEEecceeec
Confidence            1    12234555655544555 889985 78888888 699999999999654

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.27  E-value=0.24  Score=45.71  Aligned_cols=86  Identities=14%  Similarity=0.180  Sum_probs=58.2

Q ss_pred             HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEE
Q 020428          132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIA  207 (326)
Q Consensus       132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~  207 (326)
                      .+.++.+++...  .+|.|-++       +.+-+..+.++|+|.|.+...+          .+.+++..+..  ..|+.+
T Consensus       181 ~~ai~~~r~~~~~~~kIeVEv~-------tleea~ea~~~gaDiI~LDn~s----------~e~l~~av~~~~~~~~lea  243 (281)
T PRK06106        181 REAIRRARAGVGHLVKIEVEVD-------TLDQLEEALELGVDAVLLDNMT----------PDTLREAVAIVAGRAITEA  243 (281)
T ss_pred             HHHHHHHHHhCCCCCcEEEEeC-------CHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHhCCCceEEE
Confidence            345555665543  45555552       3445556668999999987663          23444444332  578999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +|||+ .+.+.++. .+|+|.+.+|.-..
T Consensus       244 SGGI~-~~ni~~yA-~tGVD~Is~Galth  270 (281)
T PRK06106        244 SGRIT-PETAPAIA-ASGVDLISVGWLTH  270 (281)
T ss_pred             ECCCC-HHHHHHHH-hcCCCEEEeChhhc
Confidence            99995 88888888 69999999997443

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=95.26  E-value=0.062  Score=53.39  Aligned_cols=72  Identities=21%  Similarity=0.328  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .+..+.++.|.++|+|.|.+..-.  ++  ...-.+.+++|++.. ++|||+ |.+.|.+.++.++ ..|||+|-||=|
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~D~a~--g~--~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~-~~G~d~i~vg~g  296 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVIDTAH--GH--QVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLL-EAGANIIKVGVG  296 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEEeCCC--CC--cHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHH-HhCCCEEEECCc
Confidence            356788999999999999985332  11  122367788998864 899999 8899999999999 699999887643

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=95.25  E-value=0.45  Score=44.36  Aligned_cols=104  Identities=24%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC---CCCC---cCCH----HHHHHH
Q 020428          129 ELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD---RPRD---PAKW----GEIADI  197 (326)
Q Consensus       129 ~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~---~~~~---~~~~----~~i~~i  197 (326)
                      +...+-+..+++.. +.|+.+-+--..+.++..+.++.+++.|+|+|.+.-.....   ...+   ..+.    +.++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v  163 (299)
T cd02940          84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV  163 (299)
T ss_pred             HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH
Confidence            33333344444444 57887766433488899999999999999999974322111   0001   1233    345566


Q ss_pred             HHhcCCcEEEe--CCCCCHHHHHHHHHhcCCcEEEec
Q 020428          198 VAALSIPVIAN--GDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       198 ~~~~~iPVi~n--GgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+++||+.=  -++.+..++.+.+++.|+|+|.+.
T Consensus       164 ~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~  200 (299)
T cd02940         164 REAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI  200 (299)
T ss_pred             HHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence            66678998743  344455566666668999999854

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=95.25  E-value=0.36  Score=42.69  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428           86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus        86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      +.++..+.++.+.+..+.|+++...=      ..+|.          ++++++++.. .++.+-+.+++-..+....++.
T Consensus         9 ~~~~a~~~~~~~~~~v~~iKig~~l~------~~~G~----------~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~   71 (213)
T TIGR01740         9 TKDEALDLADSLGPEIEVIKVGIDLL------LDGGD----------KIIDELAKLN-KLIFLDLKFADIPNTVKLQYES   71 (213)
T ss_pred             CHHHHHHHHHhcCCcCcEEEECHHHH------HhcCH----------HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHH
Confidence            34444555554444467888764210      01221          5677777653 4555544444434445556677


Q ss_pred             HHHcCCcEEEEeec
Q 020428          166 IEKTGVSALAVHGR  179 (326)
Q Consensus       166 l~~~G~d~i~vh~r  179 (326)
                      +.++|+|+++||+.
T Consensus        72 ~~~~gad~vTvh~~   85 (213)
T TIGR01740        72 KIKQGADMVNVHGV   85 (213)
T ss_pred             HHhcCCCEEEEcCC
Confidence            78899999999964

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=95.24  E-value=0.57  Score=45.33  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=95.2

Q ss_pred             CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      .+.|++..+.    |-+|+++++.+..+.. |.|.|  |=|+..|.-        +-+.++-..+.+.+++..+.++...
T Consensus       122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~a~~~a~~~a~~eTG~~~  193 (391)
T cd08209         122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPL--------APALERIRACRPVLQEVYEQTGRRT  193 (391)
T ss_pred             CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence            4468888874    7789999999888776 77776  223321111        1223344555556666666666654


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH--hcCCcEE----EeC--------CCC
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA--ALSIPVI----ANG--------DVF  212 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~--~~~iPVi----~nG--------gI~  212 (326)
                      ..=..+-.+.++..+-++.+.+.|++.+.+..-+.        -|..+..+++  ..++||.    +.|        ||.
T Consensus       194 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~Gis  265 (391)
T cd08209         194 LYAVNLTGPVFTLKEKARRLVEAGANALLFNVFAY--------GLDVLEALASDPEINVPIFAHPAFAGALYGSPDYGIA  265 (391)
T ss_pred             eEEEEcCCCHHHHHHHHHHHHHhCCCEEEEecccc--------chHHHHHHHhcCcCCcEEEecCCcccccccCCCCCCc
Confidence            44444434567888999999999999988865422        2566777777  5577886    233        444


Q ss_pred             CHHHHHHHHHhcCCcEEEeccc
Q 020428          213 EYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ..--+.++.+..|+|.+.+++.
T Consensus       266 ~~~~l~kl~RLaGaD~~~~~~~  287 (391)
T cd08209         266 ASVLLGTLMRLAGADAVLFPSP  287 (391)
T ss_pred             HHHHHHHHHHHcCCCccccCCc
Confidence            3345677787899999998864

Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.

>PLN02858 fructose-bisphosphate aldolase

Probab=95.21  E-value=0.5  Score=52.98  Aligned_cols=166  Identities=11%  Similarity=0.122  Sum_probs=98.0

Q ss_pred             eecccCCCCcEEEEECCCC-----HHHHHHHHHHhhcCC-CEEEEccC-CCcc----cccccccccc--------ccCCh
Q 020428           68 FRTCHQERNHVVFQMGTSD-----AVRALTAAKMVCKDV-AAIDINMG-CPKS----FSVSGGMGAA--------LLSKP  128 (326)
Q Consensus        68 ~~~~~~~~~p~~vQl~g~~-----~~~~~~aa~~~~~~~-d~idlN~g-cP~~----~~~~~~~G~~--------l~~~p  128 (326)
                      ++...+.+.|+++|+.-..     .+ +...+..+.+.+ --|-||+- |...    ...+.|+.|-        +..|-
T Consensus      1131 i~aAe~~~sPvIl~~~~~~~~~~~~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi 1209 (1378)
T PLN02858       1131 VAAAEAEKSPAILQVHPGALKQGGIP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSFTENI 1209 (1378)
T ss_pred             HHHHHHhCCCEEEECCccHHhhcCHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHH
Confidence            4555667789999986321     22 444444333321 12344443 2221    1122333222        33455


Q ss_pred             HHHHHHHHHHhhcccCcEEEEecC--CCC-----------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC---cCCHH
Q 020428          129 ELIHDILTMLKRNLDVPVTCKIRL--LKS-----------SQDTVELARRIEKTGVSALAVHGRKVADRPRD---PAKWG  192 (326)
Q Consensus       129 ~~~~~iv~~v~~~~~~pv~vK~r~--g~~-----------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~~~  192 (326)
                      +..+++++..... +++|-.-+..  |.+           ..++.+..+.+++.|+|.+.+.=.|..+.|.+   ..|++
T Consensus      1210 ~~t~~vv~~Ah~~-gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~ 1288 (1378)
T PLN02858       1210 SYTKSISSLAHSK-GLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLD 1288 (1378)
T ss_pred             HHHHHHHHHHHHc-CCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHH
Confidence            5556666555443 6665554432  111           11345666667789999998766666555543   36899


Q ss_pred             HHHHHHHhc---CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchh
Q 020428          193 EIADIVAAL---SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       193 ~i~~i~~~~---~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+++|++.+   ++|++.-||=.. .+++++++ ..|+.-|=|++.+.
T Consensus      1289 ~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai-~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858       1289 LLKELRALSSKKGVLLVLHGASGLPESLIKECI-ENGVRKFNVNTEVR 1335 (1378)
T ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHH-HcCCeEEEeCHHHH
Confidence            999999999   799987765443 56788888 69999999988754

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=95.20  E-value=0.43  Score=44.34  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=57.3

Q ss_pred             HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcCC
Q 020428           94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTGV  171 (326)
Q Consensus        94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~  171 (326)
                      |++++. ||+.|=+...+=....  -|+--.=+-..+.+.+.++.+...+++||++-+-.|+ ++.+....++.++++|+
T Consensus        30 Ari~e~~Gf~ai~~Sg~~~a~~~--lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGa  107 (292)
T PRK11320         30 ALLAERAGFKAIYLSGGGVAAAS--LGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGA  107 (292)
T ss_pred             HHHHHHcCCCEEEeCHHHHHhHh--cCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence            345544 8998877532111000  0110000234566778888888888999999999874 67788889999999999


Q ss_pred             cEEEEeecc
Q 020428          172 SALAVHGRK  180 (326)
Q Consensus       172 d~i~vh~r~  180 (326)
                      .+|++-...
T Consensus       108 agi~IEDq~  116 (292)
T PRK11320        108 AAVHIEDQV  116 (292)
T ss_pred             eEEEEecCC
Confidence            999996643

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=95.18  E-value=0.02  Score=48.96  Aligned_cols=73  Identities=23%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .|......-.+.+++...|+|-+-+.         .-...++++++.+++|||+.|=|.|.+|+.+++ ..||++|.-+.
T Consensus       101 iDS~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al-~aGa~aVSTS~  170 (175)
T PF04309_consen  101 IDSSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEAL-KAGADAVSTSN  170 (175)
T ss_dssp             SSHHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHC-CTTCEEEEE--
T ss_pred             ecHHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHH-HcCCEEEEcCC
Confidence            35555566677888899999988643         123567777888899999999999999999999 69999998876


Q ss_pred             chh
Q 020428          234 GAL  236 (326)
Q Consensus       234 ~~l  236 (326)
                      .-|
T Consensus       171 ~~L  173 (175)
T PF04309_consen  171 KEL  173 (175)
T ss_dssp             HHH
T ss_pred             hHh
Confidence            544

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=95.16  E-value=1  Score=42.91  Aligned_cols=150  Identities=11%  Similarity=0.036  Sum_probs=89.7

Q ss_pred             CCCCcEEEEE-CCCCH--HHHHHHHHHhh-----c---CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428           73 QERNHVVFQM-GTSDA--VRALTAAKMVC-----K---DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN  141 (326)
Q Consensus        73 ~~~~p~~vQl-~g~~~--~~~~~aa~~~~-----~---~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~  141 (326)
                      ....|+++.| .|.+.  +...++.+...     .   ||..|-+-.           ..-.+..|-+..+++++.... 
T Consensus        97 ~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDg-----------S~lpfeENI~~TrevVe~Ah~-  164 (357)
T TIGR01520        97 HYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDL-----------SEEPIEENIEICVKYLKRMAK-  164 (357)
T ss_pred             HCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeC-----------CCCCHHHHHHHHHHHHHHHHH-
Confidence            3456999999 56665  33555544321     1   366555532           222345566677777766543 


Q ss_pred             ccCcEEEEecC-C-C------Ch-------HHHHHHHHHHHHc----CCcEEEEeecccCCCCC-C--cCCHHHHHHHH-
Q 020428          142 LDVPVTCKIRL-L-K------SS-------QDTVELARRIEKT----GVSALAVHGRKVADRPR-D--PAKWGEIADIV-  198 (326)
Q Consensus       142 ~~~pv~vK~r~-g-~------~~-------~~~~e~a~~l~~~----G~d~i~vh~r~~~~~~~-~--~~~~~~i~~i~-  198 (326)
                      .++.|-.-+.. | .      +.       .++.+..+.+++.    |+|.+.+.=.|..+.|. +  ..+++.+++|. 
T Consensus       165 ~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~  244 (357)
T TIGR01520       165 IKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQE  244 (357)
T ss_pred             cCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHH
Confidence            25555444332 1 0      00       1233333444444    89999876666655563 3  46899999994 


Q ss_pred             ---HhcCCc------EEEeCCCCC-HHHHHHHHHhcCCcEEEeccch
Q 020428          199 ---AALSIP------VIANGDVFE-YDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       199 ---~~~~iP------Vi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                         +.+++|      ++.-||=.. .+++++++ ..|+.-|=+++.+
T Consensus       245 ~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai-~~GI~KINi~Tdl  290 (357)
T TIGR01520       245 YVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEAL-SYGVVKMNIDTDT  290 (357)
T ss_pred             HHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHH-HCCCeEEEeCcHH
Confidence               566888      776666544 48888999 6999888888764

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=95.14  E-value=0.45  Score=43.29  Aligned_cols=159  Identities=23%  Similarity=0.280  Sum_probs=87.7

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceee---ecc-cCCCCcEEEEE-CC--
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVF---RTC-HQERNHVVFQM-GT--   84 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~p~~vQl-~g--   84 (326)
                      |...-|+++..++.+.|+|++..+-....-..       ..-.|..   -..+.++.   ... -.....+++-+ |+  
T Consensus        20 ~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~-------G~~sT~~---vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy   89 (261)
T PF02548_consen   20 MLTAYDYPSARIADEAGVDIILVGDSLGMVVL-------GYDSTLP---VTLDEMIYHTKAVRRGAPNAFVVADMPFGSY   89 (261)
T ss_dssp             EEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT---------SSSTT-----HHHHHHHHHHHHHH-TSSEEEEE--TTSS
T ss_pred             EEecccHHHHHHHHHcCCCEEEeCCcHHHhee-------CCCCCcC---cCHHHHHHHHHHHHhcCCCceEEecCCcccc
Confidence            34455899999999999998865422111110       1111110   00000000   000 01233456666 44  


Q ss_pred             -CCHHHHHHHHH-Hhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---------
Q 020428           85 -SDAVRALTAAK-MVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---------  152 (326)
Q Consensus        85 -~~~~~~~~aa~-~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---------  152 (326)
                       .++++..+.|. .+++ |+|.|-|-.|.                   ...++++++.++ ++||.--+.+         
T Consensus        90 ~~s~e~av~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~G  149 (261)
T PF02548_consen   90 QASPEQAVRNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLG  149 (261)
T ss_dssp             TSSHHHHHHHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHHC-CCcEEEEecCchhheeccC
Confidence             35666655554 5564 89999986431                   234567777665 8999887754         


Q ss_pred             -----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428          153 -----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD  210 (326)
Q Consensus       153 -----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg  210 (326)
                           |.+.   ...++.|+.++++|+-.|.+-.-          .-++-+.|.+.++||+|+-|.
T Consensus       150 Gyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p~~la~~It~~l~IPtIGIGa  205 (261)
T PF02548_consen  150 GYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECV----------PAELAKAITEALSIPTIGIGA  205 (261)
T ss_dssp             SS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESB----------BHHHHHHHHHHSSS-EEEESS
T ss_pred             CceEEecCHHHHHHHHHHHHHHHHcCccEEeeecC----------HHHHHHHHHHhCCCCEEecCC
Confidence                 2232   35778889999999999998754          246778899999999998773

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=95.11  E-value=0.33  Score=42.70  Aligned_cols=77  Identities=25%  Similarity=0.394  Sum_probs=64.2

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      |+.-=+| +.+.++.+.+++.+-+.|++.|-|+-|+       |.-.+.|+.+++...--+|+.|=|-|++++.++. ..
T Consensus        14 ~vI~Vlr-~~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~-~a   84 (211)
T COG0800          14 PVVPVIR-GDDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAI-AA   84 (211)
T ss_pred             CeeEEEE-eCCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHH-Hc
Confidence            4444444 3568899999999999999999998775       4457899999998876699999999999999999 68


Q ss_pred             CCcEEE
Q 020428          225 GASSVM  230 (326)
Q Consensus       225 Gad~Vm  230 (326)
                      |++.++
T Consensus        85 Ga~fiV   90 (211)
T COG0800          85 GAQFIV   90 (211)
T ss_pred             CCCEEE
Confidence            998765

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=95.11  E-value=0.49  Score=45.10  Aligned_cols=142  Identities=16%  Similarity=0.172  Sum_probs=75.1

Q ss_pred             HHHHHhhc-CCCEEEEc-------cCCCccccccccccccccC-----ChHHHHHHHHHHhhc-ccCcEEEEecCC----
Q 020428           92 TAAKMVCK-DVAAIDIN-------MGCPKSFSVSGGMGAALLS-----KPELIHDILTMLKRN-LDVPVTCKIRLL----  153 (326)
Q Consensus        92 ~aa~~~~~-~~d~idlN-------~gcP~~~~~~~~~G~~l~~-----~p~~~~~iv~~v~~~-~~~pv~vK~r~g----  153 (326)
                      +..+.+.. |+.+|.+-       .|-|.+.+.......++++     ++. +..+++.+++. .++||.+-+--.    
T Consensus        73 ~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g-~~~~~~~l~~~~~~~pvivsI~~~~~~~  151 (344)
T PRK05286         73 EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDG-ADALAERLKKAYRGIPLGINIGKNKDTP  151 (344)
T ss_pred             HHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHh-HHHHHHHHHHhcCCCcEEEEEecCCCCC
Confidence            44444544 88888774       3344444322111122222     221 34444445443 578888877421    


Q ss_pred             --CChHHHHHHHHHHHHcCCcEEEEeecccC--CCC---CCcCCHHHHHHHHHhcC-----CcEEE--eCCCC--CHHHH
Q 020428          154 --KSSQDTVELARRIEKTGVSALAVHGRKVA--DRP---RDPAKWGEIADIVAALS-----IPVIA--NGDVF--EYDDF  217 (326)
Q Consensus       154 --~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~---~~~~~~~~i~~i~~~~~-----iPVi~--nGgI~--s~~d~  217 (326)
                        ...++..+.++.+.+ ++|+|.+.-....  ...   .+..-.+.++.+++.++     +||++  +-++.  ...++
T Consensus       152 ~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~i  230 (344)
T PRK05286        152 LEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDI  230 (344)
T ss_pred             cccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHH
Confidence              134566666666654 5999987422111  110   11112356677777776     99873  34443  24445


Q ss_pred             HHHHHhcCCcEEEeccch
Q 020428          218 QRIKTAAGASSVMAARGA  235 (326)
Q Consensus       218 ~~~l~~~Gad~VmiGr~~  235 (326)
                      .+.+++.|+|++.+--..
T Consensus       231 a~~l~~~Gadgi~~~nt~  248 (344)
T PRK05286        231 ADLALEHGIDGVIATNTT  248 (344)
T ss_pred             HHHHHHhCCcEEEEeCCc
Confidence            555667899999886544

>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase

Probab=95.09  E-value=1.3  Score=43.21  Aligned_cols=144  Identities=14%  Similarity=0.147  Sum_probs=87.2

Q ss_pred             CCCcEEEEECC---CCHHHHHHHHHHhhc-C-CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEE
Q 020428           74 ERNHVVFQMGT---SDAVRALTAAKMVCK-D-VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVT  147 (326)
Q Consensus        74 ~~~p~~vQl~g---~~~~~~~~aa~~~~~-~-~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~  147 (326)
                      +..|+-.|++-   .+++.+..-++.+.+ | +..+.. .|-.         +..+....+.+.+-++++++ ..+..+.
T Consensus       163 ~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~---------~~k~~~~~~~~~~ri~~lr~~g~~~~l~  232 (408)
T TIGR01502       163 NAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLD---------GEKLLEYVKWLRDRIIKLGREGYAPIFH  232 (408)
T ss_pred             CceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCC---------HHHhhhhHHHHHHHHHHhhccCCCCeEE
Confidence            34578888752   456766555554444 5 555543 3310         11112222333345555652 1234555


Q ss_pred             EEecC------CCChHHHHHHHHHHHHcCCcE-EEEeecccCCCCC---CcCCHHHHHHHHHh-----cCCcEEEeCCCC
Q 020428          148 CKIRL------LKSSQDTVELARRIEKTGVSA-LAVHGRKVADRPR---DPAKWGEIADIVAA-----LSIPVIANGDVF  212 (326)
Q Consensus       148 vK~r~------g~~~~~~~e~a~~l~~~G~d~-i~vh~r~~~~~~~---~~~~~~~i~~i~~~-----~~iPVi~nGgI~  212 (326)
                      +-..-      +|+..++.++++.+++..... +.+     +|...   ...+++..+++++.     +++||++.=.++
T Consensus       233 vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~i-----EqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~  307 (408)
T TIGR01502       233 IDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRI-----EGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCN  307 (408)
T ss_pred             EEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEE-----ecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCC
Confidence            55553      688899999999998742211 222     11110   01248889999987     599999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEec
Q 020428          213 EYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |++|+.++++...+|.|++=
T Consensus       308 t~~d~~~~i~~~a~d~v~iK  327 (408)
T TIGR01502       308 TVEDVKFFTDAKAGHMVQIK  327 (408)
T ss_pred             CHHHHHHHHHhCCCCEEEeC
Confidence            99999999976668888764

This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=95.08  E-value=0.88  Score=41.05  Aligned_cols=136  Identities=16%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC--ChHHHHHHHHHHHHc
Q 020428           93 AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK--SSQDTVELARRIEKT  169 (326)
Q Consensus        93 aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~--~~~~~~e~a~~l~~~  169 (326)
                      .|++++. ||+.+=+...+=...   .|+--.=+-..+.+.+.++.+...+++||++-+..|+  ++.+..+.++.++++
T Consensus        21 SAr~~e~~Gf~ai~~sg~~~a~s---~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~a   97 (238)
T PF13714_consen   21 SARLAERAGFDAIATSGAGVAAS---LGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERA   97 (238)
T ss_dssp             HHHHHHHTT-SEEEEHHHHHHHH---TTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCEEEechHHHHHH---cCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHc
Confidence            3455555 899887742211100   0100000224556678888888888999999999974  378899999999999


Q ss_pred             CCcEEEEeecccCCC-CCCcCC-HHHHHHHHHh------cCCcEEEeCCCCC--HHHHHHHH------HhcCCcEEEec
Q 020428          170 GVSALAVHGRKVADR-PRDPAK-WGEIADIVAA------LSIPVIANGDVFE--YDDFQRIK------TAAGASSVMAA  232 (326)
Q Consensus       170 G~d~i~vh~r~~~~~-~~~~~~-~~~i~~i~~~------~~iPVi~nGgI~s--~~d~~~~l------~~~Gad~VmiG  232 (326)
                      |+.+|++-.. +.+. ...-.+ -+.+.+|+..      .++-|++==|...  .+.+.+.+      .+.|||+|++=
T Consensus        98 G~agi~IEDq-~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~  175 (238)
T PF13714_consen   98 GAAGINIEDQ-RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIP  175 (238)
T ss_dssp             T-SEEEEESB-STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred             CCcEEEeecc-ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence            9999999766 1111 111112 2344455433      2455555555533  33333332      25899999864

...

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.07  E-value=0.12  Score=47.37  Aligned_cols=77  Identities=26%  Similarity=0.303  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      ..+..++|+.++++|+++|.|..-.   .+. ..+++.+..+++.+++||+.--=|.++.++.... ..|||+|.+.=..
T Consensus        69 ~~~~~~~A~~~~~~GA~aisvlte~---~~f-~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~-~~GAD~VlLi~~~  143 (260)
T PRK00278         69 DFDPVEIAKAYEAGGAACLSVLTDE---RFF-QGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEAR-AAGADAILLIVAA  143 (260)
T ss_pred             CCCHHHHHHHHHhCCCeEEEEeccc---ccC-CCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHH-HcCCCEEEEEecc
Confidence            3467899999999999999764322   221 2248999999999999999877788888888888 6999999988666


Q ss_pred             hc
Q 020428          236 LW  237 (326)
Q Consensus       236 l~  237 (326)
                      +.
T Consensus       144 l~  145 (260)
T PRK00278        144 LD  145 (260)
T ss_pred             CC
Confidence            54

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.05  E-value=0.41  Score=42.68  Aligned_cols=87  Identities=11%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CC--cEEEeCCCCCHHHHHHH
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SI--PVIANGDVFEYDDFQRI  220 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~i--PVi~nGgI~s~~d~~~~  220 (326)
                      +|..=+| +.+.++..++++.+.+.|+..|-|+-|+.       ...+.|+++++..  +.  -+++.|-|.|.++++.+
T Consensus        16 ~vi~Vvr-~~~~~~a~~~~~al~~gGi~~iEiT~~tp-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a   87 (222)
T PRK07114         16 GMVPVFY-HADVEVAKKVIKACYDGGARVFEFTNRGD-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALY   87 (222)
T ss_pred             CEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCC-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHH
Confidence            4444455 36788999999999999999999988753       3467777776432  22  37999999999999999


Q ss_pred             HHhcCCcEEEeccchhcCccccc
Q 020428          221 KTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       221 l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      + ..||+.++-=   -.||.+.+
T Consensus        88 ~-~aGA~FiVsP---~~~~~v~~  106 (222)
T PRK07114         88 I-QLGANFIVTP---LFNPDIAK  106 (222)
T ss_pred             H-HcCCCEEECC---CCCHHHHH
Confidence            9 6999987643   24666554

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=94.99  E-value=0.26  Score=45.43  Aligned_cols=95  Identities=12%  Similarity=0.037  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH-hcCCcEEE
Q 020428          130 LIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA-ALSIPVIA  207 (326)
Q Consensus       130 ~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~-~~~iPVi~  207 (326)
                      -+.+.++.+++.. ..+|.|-++       +.+-++.+.++|+|.|.+|+.+.++      ..+.++.+++ ..++.+.+
T Consensus       174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e~------l~~~v~~l~~~~~~~~lea  240 (277)
T TIGR01334       174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQQ------LHHLHERLKFFDHIPTLAA  240 (277)
T ss_pred             cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHHH------HHHHHHHHhccCCCEEEEE
Confidence            4667777777654 455666553       4566777778999999999653221      1223333332 23677899


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +|||+ ++.+.++. .+|+|.+++|.-....|
T Consensus       241 sGGI~-~~ni~~ya-~~GvD~is~gal~~a~~  270 (277)
T TIGR01334       241 AGGIN-PENIADYI-EAGIDLFITSAPYYAAP  270 (277)
T ss_pred             ECCCC-HHHHHHHH-hcCCCEEEeCcceecCc
Confidence            99995 88898888 69999999996544444

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.99  E-value=0.29  Score=45.41  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=60.9

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      .+.++.+++.. ..+|.|-.       ++.+-++.+.++|+|.|.+...+.          +.+++..+.+  ++.+.++
T Consensus       193 ~~av~~~r~~~~~~kIeVEv-------etleea~eA~~aGaDiImLDnmsp----------e~l~~av~~~~~~~~lEaS  255 (294)
T PRK06978        193 GAALDAAFALNAGVPVQIEV-------ETLAQLETALAHGAQSVLLDNFTL----------DMMREAVRVTAGRAVLEVS  255 (294)
T ss_pred             HHHHHHHHHhCCCCcEEEEc-------CCHHHHHHHHHcCCCEEEECCCCH----------HHHHHHHHhhcCCeEEEEE
Confidence            35556665543 23455544       345666777789999999987643          3333333322  5678899


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      |||+ .+.+.++. .+|+|.+.+|.-...-||+
T Consensus       256 GGIt-~~ni~~yA-~tGVD~IS~galthsa~~l  286 (294)
T PRK06978        256 GGVN-FDTVRAFA-ETGVDRISIGALTKDVRAT  286 (294)
T ss_pred             CCCC-HHHHHHHH-hcCCCEEEeCccccCCccc
Confidence            9995 88888888 6999999999755555543

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.97  E-value=0.34  Score=44.76  Aligned_cols=91  Identities=14%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEE
Q 020428          131 IHDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVI  206 (326)
Q Consensus       131 ~~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi  206 (326)
                      +.+.++.+|+..+  .+|.|-.       ++.+-+..+.++|+|.|.+...+.          +.+++..+.+  ...+.
T Consensus       179 i~~av~~~r~~~~~~~kIeVEv-------~slee~~ea~~~gaDiImLDn~s~----------e~l~~av~~~~~~~~le  241 (281)
T PRK06543        179 LTEALRHVRAQLGHTTHVEVEV-------DRLDQIEPVLAAGVDTIMLDNFSL----------DDLREGVELVDGRAIVE  241 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEe-------CCHHHHHHHHhcCCCEEEECCCCH----------HHHHHHHHHhCCCeEEE
Confidence            3455566666543  4566655       345556666689999999976632          3333333322  35788


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus       242 aSGgI~-~~ni~~yA-~tGVD~Is~galths~~~  273 (281)
T PRK06543        242 ASGNVN-LNTVGAIA-STGVDVISVGALTHSVRA  273 (281)
T ss_pred             EECCCC-HHHHHHHH-hcCCCEEEeCccccCCcc
Confidence            999995 88888888 699999999975444444

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=94.92  E-value=0.16  Score=47.51  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=62.4

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+|+|.+-|-|.+....... ..+.++.+++.+  ++|||+ .|+..|.+.++..  .+..|+|
T Consensus        22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad  101 (299)
T COG0329          22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGAD  101 (299)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCC
Confidence            466788999999999999999999988775443322 234456666665  588886 5665555544322  3468999


Q ss_pred             EEEeccchhcCcc
Q 020428          228 SVMAARGALWNAS  240 (326)
Q Consensus       228 ~VmiGr~~l~~P~  240 (326)
                      ++|+-...+..|.
T Consensus       102 ~il~v~PyY~k~~  114 (299)
T COG0329         102 GILVVPPYYNKPS  114 (299)
T ss_pred             EEEEeCCCCcCCC
Confidence            9999999887765

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=94.92  E-value=0.095  Score=45.82  Aligned_cols=140  Identities=16%  Similarity=0.233  Sum_probs=77.3

Q ss_pred             EEECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428           80 FQMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD  158 (326)
Q Consensus        80 vQl~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~  158 (326)
                      |.|+|. +++++..+++   .++|.+-+.+- |.+.         -.-.++.+.++++.++..   +|.|-.     ..+
T Consensus         1 vKICGi~~~~da~~~~~---~g~d~~Gfi~~-~~S~---------R~v~~~~a~~l~~~~~~~---~VgVf~-----~~~   59 (197)
T PF00697_consen    1 VKICGITRPEDARLAAE---LGADYLGFIFY-PKSP---------RYVSPDQARELVSAVPPK---IVGVFV-----NQS   59 (197)
T ss_dssp             EEEE---SHHHHHHHHH---HTSSEEEEE---TTCT---------TB--HHHHHHHHCCSSSS---EEEEES-----SS-
T ss_pred             CeECCCCcHHHHHHHHH---cCCCEEeeecC-CCCC---------CccCHHHHHHHHHhcCCC---EEEEEc-----CCC
Confidence            355553 4555554443   26676666543 2211         012455666655444321   333322     224


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccC-------------------------------------------CCCCCcCCHHHHH
Q 020428          159 TVELARRIEKTGVSALAVHGRKVA-------------------------------------------DRPRDPAKWGEIA  195 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~-------------------------------------------~~~~~~~~~~~i~  195 (326)
                      ..++.+.+++++.|.|.+||-...                                           ++.....||+.++
T Consensus        60 ~~~I~~~~~~~~ld~vQLHG~e~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~  139 (197)
T PF00697_consen   60 PEEILEIVEELGLDVVQLHGDESPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLK  139 (197)
T ss_dssp             HHHHHHHHHHCTESEEEE-SGG-HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGC
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhh
Confidence            555666777777888887765320                                           0111246899998


Q ss_pred             HHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          196 DIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       196 ~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      .+.+. .+.|++..|||. ++.+.++++..+..||=+.+|.=.+|..
T Consensus       140 ~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG~  185 (197)
T PF00697_consen  140 KIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPGV  185 (197)
T ss_dssp             CCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred             hhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCCC
Confidence            88774 489999999996 7788888877999999999997777765

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=94.88  E-value=0.37  Score=47.16  Aligned_cols=98  Identities=17%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             HHHHHHhhcc-cCcEEEEecCCC-ChHHHHHHHHHHHHcCCcEEEEeecccC---CCCCC---cCCHH----HHHHHHHh
Q 020428          133 DILTMLKRNL-DVPVTCKIRLLK-SSQDTVELARRIEKTGVSALAVHGRKVA---DRPRD---PAKWG----EIADIVAA  200 (326)
Q Consensus       133 ~iv~~v~~~~-~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~d~i~vh~r~~~---~~~~~---~~~~~----~i~~i~~~  200 (326)
                      +.+..+++.. +.|+.+-+- |. +.++..+.++.++++|+|+|.+--....   .+..|   ..+.+    .++.+++.
T Consensus        88 ~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~  166 (420)
T PRK08318         88 REIRRVKRDYPDRALIASIM-VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG  166 (420)
T ss_pred             HHHHHHHhhCCCceEEEEec-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc
Confidence            3334444443 577776664 44 7788999999999999999997422211   01111   12333    45556666


Q ss_pred             cCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          201 LSIPVI--ANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       201 ~~iPVi--~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +++||+  ..-++.+..++.+.+++.|+|++.+
T Consensus       167 ~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~  199 (420)
T PRK08318        167 SRLPVIVKLTPNITDIREPARAAKRGGADAVSL  199 (420)
T ss_pred             cCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence            689987  4566777778878777899999994

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=94.87  E-value=1.1  Score=43.00  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=88.1

Q ss_pred             CCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEEEEc--cCCCccccccccccccccCChHHHHHHHHHHhhcccC--c
Q 020428           75 RNHVVFQMG----TSDAVRALTAAKMVCK-DVAAIDIN--MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV--P  145 (326)
Q Consensus        75 ~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~idlN--~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~--p  145 (326)
                      +.|++.-++    |-|++.+++.+..+.. |+|+|-..  .|-+.        -..+.++-+.+.+.++.+.+.++.  +
T Consensus       129 ~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~--------~~~~eER~~~v~~av~~a~~~TG~~~~  200 (367)
T cd08205         129 DRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP--------YAPFEERVRACMEAVRRANEETGRKTL  200 (367)
T ss_pred             CCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc--------cCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence            457777764    6679999999988876 88987432  22111        112233445556666666655533  3


Q ss_pred             EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe----C-------CCCCH
Q 020428          146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN----G-------DVFEY  214 (326)
Q Consensus       146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n----G-------gI~s~  214 (326)
                      +..-+.  .+.++.++.++.++++|+|++.+..-..     +   +..+..+.+..++||.+-    |       .+.+.
T Consensus       201 y~~nit--~~~~e~i~~a~~a~~~Gad~vmv~~~~~-----g---~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~  270 (367)
T cd08205         201 YAPNIT--GDPDELRRRADRAVEAGANALLINPNLV-----G---LDALRALAEDPDLPIMAHPAFAGALSRSPDYGSHF  270 (367)
T ss_pred             EEEEcC--CCHHHHHHHHHHHHHcCCCEEEEecccc-----c---ccHHHHHHhcCCCeEEEccCcccccccCCCCcCCH
Confidence            333333  3358899999999999999998864421     1   223445555557777631    2       13445


Q ss_pred             HHHHHHHHhcCCcEEEecc
Q 020428          215 DDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       215 ~d~~~~l~~~Gad~VmiGr  233 (326)
                      --..++.+..|+|.+..+.
T Consensus       271 ~~~~kl~RlaGad~~~~~~  289 (367)
T cd08205         271 LLLGKLMRLAGADAVIFPG  289 (367)
T ss_pred             HHHHHHHHHcCCCccccCC
Confidence            5666777778999988774

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=94.82  E-value=0.19  Score=46.81  Aligned_cols=86  Identities=16%  Similarity=0.168  Sum_probs=59.8

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|.|.+...-... ..++++.+.+.+  ++||++.=+-.|.+++.++.   +..|||
T Consensus        18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad   97 (294)
T TIGR02313        18 IDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD   97 (294)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence            356778899999999999999999988775543221 234455555544  68998655545555554333   468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +||+....+..|
T Consensus        98 ~v~v~pP~y~~~  109 (294)
T TIGR02313        98 AAMVIVPYYNKP  109 (294)
T ss_pred             EEEEcCccCCCC
Confidence            999998877655

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=94.80  E-value=0.45  Score=41.78  Aligned_cols=123  Identities=13%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHH
Q 020428           89 RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIE  167 (326)
Q Consensus        89 ~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~  167 (326)
                      .+.+-++.+.+ |+|++-+.  |=.+    ++     --|.+.+.+++++..   +.|++. -|.-+...+..+-.+.+.
T Consensus        73 ~M~~dI~~~~~~GadG~VfG--~L~~----dg-----~iD~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~~al~~L~  137 (201)
T PF03932_consen   73 IMKEDIRMLRELGADGFVFG--ALTE----DG-----EIDEEALEELIEAAG---GMPVTF-HRAFDEVPDPEEALEQLI  137 (201)
T ss_dssp             HHHHHHHHHHHTT-SEEEE----BET----TS-----SB-HHHHHHHHHHHT---TSEEEE--GGGGGSSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCeeEEE--eECC----CC-----CcCHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHHHHHHHHH
Confidence            45555566666 99998864  3222    11     135677777777765   667777 444332334566677888


Q ss_pred             HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          168 KTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +.|++.|.-+|....    -....+.++++.+..  ++-|++.|||+ .+.+..+++.+|+..+=.
T Consensus       138 ~lG~~rVLTSGg~~~----a~~g~~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~~tg~~~~H~  198 (201)
T PF03932_consen  138 ELGFDRVLTSGGAPT----ALEGIENLKELVEQAKGRIEIMPGGGVR-AENVPELVEETGVREIHG  198 (201)
T ss_dssp             HHT-SEEEESTTSSS----TTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEEEE
T ss_pred             hcCCCEEECCCCCCC----HHHHHHHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHHhhCCeEEee
Confidence            889999987776422    233467777776543  68899999997 566778887799876643

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=94.78  E-value=0.53  Score=43.77  Aligned_cols=54  Identities=13%  Similarity=0.091  Sum_probs=43.6

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcCCcEEEEeecc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTGVSALAVHGRK  180 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~d~i~vh~r~  180 (326)
                      ..+.+.+.++.+...+++||++-+-.|+ +..+....++.++++|+.+|++-.-+
T Consensus        61 ~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~  115 (294)
T TIGR02319        61 SVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQV  115 (294)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCC
Confidence            3456677788888888999999999874 34457788999999999999997654

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>TIGR03586 PseI pseudaminic acid synthase

Probab=94.78  E-value=1.6  Score=41.22  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             cccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC-cEEEEeecccCCCCCCcCCHHHHHHHHH
Q 020428          121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV-SALAVHGRKVADRPRDPAKWGEIADIVA  199 (326)
Q Consensus       121 G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~-d~i~vh~r~~~~~~~~~~~~~~i~~i~~  199 (326)
                      ||.-+.+..++..+    .+ .+.||.+|... .+.++....+..+.+.|. +.+.+|+-+.-.......|+..|..+++
T Consensus       117 ~S~~~~n~~LL~~v----a~-~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~  190 (327)
T TIGR03586       117 ASFEITDLPLIRYV----AK-TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAE  190 (327)
T ss_pred             CCccccCHHHHHHH----Hh-cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHH
Confidence            45556676665554    33 48999999987 477888888888999998 5666786433222234568889999999


Q ss_pred             hcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          200 ALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       200 ~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      ..++||.+++--....-..... ..||+
T Consensus       191 ~f~~pVG~SDHt~G~~~~~aAv-a~GA~  217 (327)
T TIGR03586       191 RFNVPVGLSDHTLGILAPVAAV-ALGAC  217 (327)
T ss_pred             HhCCCEEeeCCCCchHHHHHHH-HcCCC
Confidence            8999997775322233333444 46776

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=94.77  E-value=0.67  Score=42.40  Aligned_cols=97  Identities=19%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      .|.+...+-|+. +++|+|.||||++.+            ....++.+..+|+.+++.+++||++-..   +    .+.+
T Consensus        22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~---~----~~v~   82 (261)
T PRK07535         22 KDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSP---N----PAAI   82 (261)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCC---C----HHHH
Confidence            456666555554 445999999998732            1344778899999998888999998774   1    2333


Q ss_pred             HHHHHc--CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          164 RRIEKT--GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       164 ~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      +...++  |++.|.  .-+...     ...+.+..+.+..+.|+++
T Consensus        83 eaaL~~~~G~~iIN--sIs~~~-----~~~~~~~~l~~~~g~~vv~  121 (261)
T PRK07535         83 EAGLKVAKGPPLIN--SVSAEG-----EKLEVVLPLVKKYNAPVVA  121 (261)
T ss_pred             HHHHHhCCCCCEEE--eCCCCC-----ccCHHHHHHHHHhCCCEEE
Confidence            444443  877653  222111     1123344555566888875

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.76  E-value=0.34  Score=44.91  Aligned_cols=90  Identities=10%  Similarity=0.118  Sum_probs=58.7

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCCcE
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSIPV  205 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~iPV  205 (326)
                      .+.++.+++.. ..++.|-++       +.+.+..+.++|+|.|.+...+          .+.+++..+.     .++.+
T Consensus       187 ~~ai~~~r~~~~~~kIeVEv~-------tl~ea~eal~~gaDiI~LDnm~----------~e~vk~av~~~~~~~~~v~i  249 (289)
T PRK07896        187 VAALRAVRAAAPDLPCEVEVD-------SLEQLDEVLAEGAELVLLDNFP----------VWQTQEAVQRRDARAPTVLL  249 (289)
T ss_pred             HHHHHHHHHhCCCCCEEEEcC-------CHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHHhccCCCEEE
Confidence            34455555543 355666552       3445555668999999998553          2333333322     35779


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      .++|||+ ++.+.++. .+|+|.+.+|.-...-|+
T Consensus       250 eaSGGI~-~~ni~~yA-~tGvD~Is~galt~sa~~  282 (289)
T PRK07896        250 ESSGGLT-LDTAAAYA-ETGVDYLAVGALTHSVPV  282 (289)
T ss_pred             EEECCCC-HHHHHHHH-hcCCCEEEeChhhcCCCc
Confidence            9999995 88888888 699999999975543343

>PRK15063 isocitrate lyase; Provisional

Probab=94.74  E-value=2.3  Score=41.52  Aligned_cols=151  Identities=12%  Similarity=0.064  Sum_probs=94.0

Q ss_pred             CcEEEEE---CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc---ccCcEEE
Q 020428           76 NHVVFQM---GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN---LDVPVTC  148 (326)
Q Consensus        76 ~p~~vQl---~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~---~~~pv~v  148 (326)
                      .|+++-+   +|+.+. ..+.++.+.+ |+.+|.|-=..+.+|.+....|-.|....+.+.. +.+++.+   .+.|+.+
T Consensus       147 ~PIiADaDtGfGg~~n-v~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~k-L~AAr~A~d~~g~~~vI  224 (428)
T PRK15063        147 APIVADAEAGFGGVLN-AFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRK-LVAARLAADVMGVPTLV  224 (428)
T ss_pred             CCeEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHH-HHHHHHHHHhcCCCeEE
Confidence            5999988   355444 6677777665 9999988655554554433334345544444444 4444433   3667666


Q ss_pred             EecCCC--------------------------------ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428          149 KIRLLK--------------------------------SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       149 K~r~g~--------------------------------~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                      --|..-                                ..+++++-++.+.+ |+|.|-+..        +..+.+.+++
T Consensus       225 iARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et--------~~~d~ee~~~  295 (428)
T PRK15063        225 IARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCET--------STPDLEEARR  295 (428)
T ss_pred             EEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCC--------CCCCHHHHHH
Confidence            566421                                24567888888888 999998864        3457888999


Q ss_pred             HHHhcCC--c--EEEeCCCCC--------HHHHHHH---HHhcCCcEEEeccchhc
Q 020428          197 IVAALSI--P--VIANGDVFE--------YDDFQRI---KTAAGASSVMAARGALW  237 (326)
Q Consensus       197 i~~~~~i--P--Vi~nGgI~s--------~~d~~~~---l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.++.  |  +.++|.--+        .+++..+   +.+.|...+.+--+.+.
T Consensus       296 fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~h  351 (428)
T PRK15063        296 FAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFH  351 (428)
T ss_pred             HHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHHcCceEEEechHHHH
Confidence            9988754  7  777763222        3333333   34577777777655443

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=94.73  E-value=1.5  Score=41.77  Aligned_cols=150  Identities=10%  Similarity=0.012  Sum_probs=89.5

Q ss_pred             CCCCcEEEEE-CCCC-----HHHHHHHH-----HHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc
Q 020428           73 QERNHVVFQM-GTSD-----AVRALTAA-----KMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN  141 (326)
Q Consensus        73 ~~~~p~~vQl-~g~~-----~~~~~~aa-----~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~  141 (326)
                      ....|+++.| .|.+     .+...+|.     +.+..||..|-+..+           --.+..|-+..+++++.....
T Consensus        85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS-----------~lp~eENI~~TkevVe~Ah~~  153 (345)
T cd00946          85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLS-----------EEPLEENIEICKKYLERMAKI  153 (345)
T ss_pred             HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCC-----------CCCHHHHHHHHHHHHHHHHHc
Confidence            3456999999 5556     33333322     122337876666432           122445666777777666443


Q ss_pred             ccCcEEEEecC--CC------C-------hHHHHHHHHHHHHc----CCcEEEEeecccCCCCC---CcCCHHHHHHH--
Q 020428          142 LDVPVTCKIRL--LK------S-------SQDTVELARRIEKT----GVSALAVHGRKVADRPR---DPAKWGEIADI--  197 (326)
Q Consensus       142 ~~~pv~vK~r~--g~------~-------~~~~~e~a~~l~~~----G~d~i~vh~r~~~~~~~---~~~~~~~i~~i--  197 (326)
                       ++.|-.-+..  |.      +       ..++.+..+.+++.    |+|.|.+.-.|..+.|.   ...+++.+++|  
T Consensus       154 -gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~  232 (345)
T cd00946         154 -NMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQD  232 (345)
T ss_pred             -CCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHH
Confidence             5555443332  10      0       01233333444443    88999876666666664   23589999998  


Q ss_pred             --HHhc------CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccch
Q 020428          198 --VAAL------SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       198 --~~~~------~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                        ++.+      ++|++.-||=.+ .+++++++ ..|+.-|=|++.+
T Consensus       233 ~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai-~~GI~KiNi~T~l  278 (345)
T cd00946         233 YVREKLGLADDKPLYFVFHGGSGSTKEEIREAI-SYGVVKMNIDTDT  278 (345)
T ss_pred             HHHHhhccccCCCCCEEEeCCCCCCHHHHHHHH-HcCCeeEEeCcHH
Confidence              5454      689887776554 47788888 6899888888764

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=94.73  E-value=0.49  Score=44.92  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEc-------cCCCccccccccccccccCC----hHHHHHHHHHHhh-cc
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDIN-------MGCPKSFSVSGGMGAALLSK----PELIHDILTMLKR-NL  142 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN-------~gcP~~~~~~~~~G~~l~~~----p~~~~~iv~~v~~-~~  142 (326)
                      .|+++ -.|.+  ...+..+.+.+ |+.+|.+-       -|-|.+...+.....++++.    ..-+...++.+++ ..
T Consensus        57 NPi~l-AsG~~--~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~  133 (335)
T TIGR01036        57 NPLGL-AAGFD--KDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARY  133 (335)
T ss_pred             CCcEe-CCccC--CCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccC
Confidence            37776 33332  33344444444 88888874       23344433221111222221    1224444555543 23


Q ss_pred             cCcEEEEecCC---C---ChHHHHHHHHHHHHcCCcEEEEe--ecccCCCCCCcCC----HHHHHHHHHhcC-------C
Q 020428          143 DVPVTCKIRLL---K---SSQDTVELARRIEKTGVSALAVH--GRKVADRPRDPAK----WGEIADIVAALS-------I  203 (326)
Q Consensus       143 ~~pv~vK~r~g---~---~~~~~~e~a~~l~~~G~d~i~vh--~r~~~~~~~~~~~----~~~i~~i~~~~~-------i  203 (326)
                      +.|+.+-+...   .   ..++..+.++.+.+ .+|+|.+-  .-..... ....+    .+.++.+++.++       +
T Consensus       134 ~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~-~~~~~~~~~~~i~~~V~~~~~~~~~~~~~  211 (335)
T TIGR01036       134 KGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGL-RDLQYKAELRDLLTAVKQEQDGLRRVHRV  211 (335)
T ss_pred             CCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCc-ccccCHHHHHHHHHHHHHHHHhhhhccCC
Confidence            55665554321   1   23455555555554 39999873  2221111 11112    234555665555       8


Q ss_pred             cEE--EeCCCC--CHHHHHHHHHhcCCcEEEeccch
Q 020428          204 PVI--ANGDVF--EYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       204 PVi--~nGgI~--s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      ||+  ..-++.  +..++.+.+.+.|+|||.+---+
T Consensus       212 Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~  247 (335)
T TIGR01036       212 PVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTT  247 (335)
T ss_pred             ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence            987  444554  35566665567999999876444

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=94.72  E-value=0.35  Score=44.94  Aligned_cols=90  Identities=11%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      .+.++.++... ..+|.|-++       +.+.+..+.++|+|.|.+...+.          +.++++.+..  ++.+.++
T Consensus       196 ~~av~~~r~~~~~~kIeVEv~-------sleea~ea~~~gaDiI~LDn~s~----------e~~~~av~~~~~~~~ieaS  258 (296)
T PRK09016        196 RQAVEKAFWLHPDVPVEVEVE-------NLDELDQALKAGADIIMLDNFTT----------EQMREAVKRTNGRALLEVS  258 (296)
T ss_pred             HHHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEeCCCCh----------HHHHHHHHhhcCCeEEEEE
Confidence            34455555443 456666653       35666677789999998876532          3344333322  6788999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |||+ .+.+.++. .+|+|.+.+|.-.-.-||
T Consensus       259 GGI~-~~ni~~yA-~tGVD~Is~galthsa~~  288 (296)
T PRK09016        259 GNVT-LETLREFA-ETGVDFISVGALTKHVQA  288 (296)
T ss_pred             CCCC-HHHHHHHH-hcCCCEEEeCccccCCCc
Confidence            9995 88888888 699999999974433343

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=94.71  E-value=0.23  Score=42.01  Aligned_cols=68  Identities=24%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |......-.+.+++.+.|+|-+-+.         .--..++++.+++++|||+.|=|.|.|++.+++ ..||-+|.-.
T Consensus       106 DS~Al~~~~~~i~~~~pD~iEvLPG---------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al-~aGA~avSTs  173 (181)
T COG1954         106 DSIALEKGIKQIEKSEPDFIEVLPG---------VMPKVIKEITEKTHIPIIAGGLIETEEEVREAL-KAGAVAVSTS  173 (181)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEcCc---------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHH-HhCcEEEeec
Confidence            4445556667778889999987543         234788999999999999999999999999999 6898888643

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=94.65  E-value=1.2  Score=40.31  Aligned_cols=115  Identities=15%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C---CChH---HHHHHHHHHHHcC
Q 020428           99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L---KSSQ---DTVELARRIEKTG  170 (326)
Q Consensus        99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g---~~~~---~~~e~a~~l~~~G  170 (326)
                      .|+|-|||+.+=..         +.+--.+.    +++.+++.+++||.|=+|.  |   .+.+   .-.+-++.+.+.|
T Consensus        20 ~GAdRiELc~~L~~---------GGlTPS~g----~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~G   86 (248)
T PRK11572         20 AGADRIELCAAPKE---------GGLTPSLG----VLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELG   86 (248)
T ss_pred             cCCCEEEEccCcCC---------CCcCCCHH----HHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence            48999999643110         11112222    3555556668999888887  3   2333   3455677888999


Q ss_pred             CcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC---CCCCHHHHHHHHHhcCCcEEE
Q 020428          171 VSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG---DVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       171 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG---gI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +|+|++-.-+.+    +..|.+.++++.+.. ++|+...=   -+.++..+.+.+...|++.|.
T Consensus        87 adGvV~G~L~~d----g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rIL  146 (248)
T PRK11572         87 FPGLVTGVLDVD----GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARIL  146 (248)
T ss_pred             CCEEEEeeECCC----CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEE
Confidence            999987655543    446777777766654 45655332   223444444444356776664

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.64  E-value=0.46  Score=41.21  Aligned_cols=88  Identities=17%  Similarity=0.235  Sum_probs=65.6

Q ss_pred             HHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC
Q 020428          134 ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE  213 (326)
Q Consensus       134 iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s  213 (326)
                      +++.+.+   .++..=+|. .+.++..++++.+.+.|++.|.+.-++.       ...+.++.+++....-.++.|-+.+
T Consensus         5 ~~~~l~~---~~~~~v~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k~~-------~~~e~~~~~~~~~~~~~~g~gtvl~   73 (187)
T PRK07455          5 WLAQLQQ---HRAIAVIRA-PDLELGLQMAEAVAAGGMRLIEITWNSD-------QPAELISQLREKLPECIIGTGTILT   73 (187)
T ss_pred             HHHHHHh---CCEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCC-------CHHHHHHHHHHhCCCcEEeEEEEEc
Confidence            4444443   345544663 5678899999999999999999875543       2456777777665555578899999


Q ss_pred             HHHHHHHHHhcCCcEEEecc
Q 020428          214 YDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       214 ~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .+++..++ ..|||+|++|-
T Consensus        74 ~d~~~~A~-~~gAdgv~~p~   92 (187)
T PRK07455         74 LEDLEEAI-AAGAQFCFTPH   92 (187)
T ss_pred             HHHHHHHH-HcCCCEEECCC
Confidence            99999999 69999997774

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=94.61  E-value=0.19  Score=42.59  Aligned_cols=79  Identities=20%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHH----HHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQR----IKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~----~l~~~Gad~VmiG  232 (326)
                      +...+.++.+.+.|++.+.+..............++.+..+.+..++|++++..+.+..+...    .....|+|+|.+.
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~   91 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH   91 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence            467889999999999999987665443333332234577777788999999988877766542    4447899999998


Q ss_pred             cch
Q 020428          233 RGA  235 (326)
Q Consensus       233 r~~  235 (326)
                      -..
T Consensus        92 ~~~   94 (200)
T cd04722          92 GAV   94 (200)
T ss_pred             ccC
Confidence            554

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR02317 prpB methylisocitrate lyase

Probab=94.59  E-value=0.53  Score=43.62  Aligned_cols=83  Identities=14%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             HHHhhc-CCCEEEEccCCCcccccccccc-ccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcC
Q 020428           94 AKMVCK-DVAAIDINMGCPKSFSVSGGMG-AALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTG  170 (326)
Q Consensus        94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G-~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G  170 (326)
                      |++++. ||+.+=+...+=+. .  -|+- ..++ ..+.+.+.++.+...+++||++-+-.|+ ++.+....++.++++|
T Consensus        26 Ari~e~aGf~Ai~~sg~~~a~-~--lG~pD~g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG  101 (285)
T TIGR02317        26 ALLAERAGFEAIYLSGAAVAA-S--LGLPDLGIT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAG  101 (285)
T ss_pred             HHHHHHcCCCEEEEcHHHHHH-h--CCCCCCCCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence            344444 89888775332111 0  0110 0123 4566777788888888999999999873 4777888899999999


Q ss_pred             CcEEEEeecc
Q 020428          171 VSALAVHGRK  180 (326)
Q Consensus       171 ~d~i~vh~r~  180 (326)
                      +.+|++-..+
T Consensus       102 ~agi~IEDq~  111 (285)
T TIGR02317       102 AAAVHIEDQV  111 (285)
T ss_pred             CeEEEEecCC
Confidence            9999997654

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.56  E-value=0.15  Score=50.65  Aligned_cols=71  Identities=23%  Similarity=0.325  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +..+.++.+.++|++.|.+..-...    +..-++.+++|++.. +++|| .|+|.|.+.++.++ ..|||+|-+|=|
T Consensus       227 ~~~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~-~aGad~v~vgig  298 (479)
T PRK07807        227 DVAAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLV-EAGADIVKVGVG  298 (479)
T ss_pred             hHHHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHH-HcCCCEEEECcc
Confidence            5678899999999999988543222    233478899999876 56665 49999999999999 699999886643

>cd00423 Pterin_binding Pterin binding enzymes

Probab=94.52  E-value=0.39  Score=43.81  Aligned_cols=105  Identities=20%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      .+++...+-|+.. ++|+|.||||++...|....    -......+.+..+++.+++.+++||++-..       -.+++
T Consensus        21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~----~~~~~E~~rl~~~v~~l~~~~~~piSIDT~-------~~~v~   89 (258)
T cd00423          21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEP----VSVEEELERVIPVLRALAGEPDVPISVDTF-------NAEVA   89 (258)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc----CCHHHHHHHHHHHHHHHHhcCCCeEEEeCC-------cHHHH
Confidence            4667666666554 45999999998876552100    001123356778888888877899988663       23556


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN  208 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n  208 (326)
                      +...++|++.|.  .-+..     ..+ +.+.++.+..+.|+++.
T Consensus        90 ~aaL~~g~~iIN--dis~~-----~~~-~~~~~l~~~~~~~vV~m  126 (258)
T cd00423          90 EAALKAGADIIN--DVSGG-----RGD-PEMAPLAAEYGAPVVLM  126 (258)
T ss_pred             HHHHHhCCCEEE--eCCCC-----CCC-hHHHHHHHHcCCCEEEE
Confidence            666677877653  11111     111 23344555567777653

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III

Probab=94.46  E-value=1.2  Score=43.45  Aligned_cols=145  Identities=6%  Similarity=0.011  Sum_probs=94.7

Q ss_pred             CCCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc
Q 020428           73 QERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP  145 (326)
Q Consensus        73 ~~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p  145 (326)
                      ..+.|++.-+.    |-+|+++++.+..+.. |.|.|  |=|+.-|.        -+-+.++.+.+.+.++...+.++..
T Consensus       128 v~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~--------~~p~~~Rv~~~~~a~~~a~~eTG~~  199 (412)
T cd08213         128 IKDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQP--------FNRFEERAKESLKARDKAEAETGER  199 (412)
T ss_pred             CCCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC--------CCCHHHHHHHHHHHHHHHHHhhCCc
Confidence            34568887774    7789999999888776 67766  22332111        0112344555666666666666665


Q ss_pred             EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH---hcCCcEEE----eC--------C
Q 020428          146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA---ALSIPVIA----NG--------D  210 (326)
Q Consensus       146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~----nG--------g  210 (326)
                      ...=..+--+.++..+-++.+.+.|++.+.+..-+.        -|..+..+++   ..++||.+    .|        |
T Consensus       200 ~~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~~l~ihaHra~~ga~~r~~~~G  271 (412)
T cd08213         200 KAYLANITAPVREMERRAELVADLGGKYVMIDVVVA--------GWSALQYLRDLAEDYGLAIHAHRAMHAAFTRNPRHG  271 (412)
T ss_pred             ceEEEEecCCHHHHHHHHHHHHHhCCCeEEeecccc--------ChHHHHHHHHhccccCeEEEECCCcceecccCCcCc
Confidence            444444433477888999999999999988765432        2455666665   45688875    22        4


Q ss_pred             CCCHHHHHHHHHhcCCcEEEeccc
Q 020428          211 VFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      |.. .-+.++.+..|+|.+.+++.
T Consensus       272 is~-~~l~kl~RLaGaD~ih~~t~  294 (412)
T cd08213         272 ISM-LVLAKLYRLIGVDQLHIGTA  294 (412)
T ss_pred             CcH-HHHHHHHHHcCCCccccCCc
Confidence            544 46777787899999999864

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=94.45  E-value=0.61  Score=44.82  Aligned_cols=105  Identities=15%  Similarity=0.212  Sum_probs=73.3

Q ss_pred             ccCChHHHHHHHHHHhhcc---cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428          124 LLSKPELIHDILTMLKRNL---DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA  200 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~  200 (326)
                      .++|++-+..-++++++.-   ..-++.-++.-.+.+..+++++.+.+.|+|.|.+-....-  .+....+++++.+++.
T Consensus       120 AlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGl--ltP~~ayelVk~iK~~  197 (472)
T COG5016         120 ALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGL--LTPYEAYELVKAIKKE  197 (472)
T ss_pred             hccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeeccccc--CChHHHHHHHHHHHHh
Confidence            4788888888888887652   2223333333456788999999999999999998655322  2334468999999999


Q ss_pred             cCCcEEE----eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          201 LSIPVIA----NGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       201 ~~iPVi~----nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++||-.    .-|+.+.. ..+.+ +.|+|++--+
T Consensus       198 ~~~pv~lHtH~TsG~a~m~-ylkAv-EAGvD~iDTA  231 (472)
T COG5016         198 LPVPVELHTHATSGMAEMT-YLKAV-EAGVDGIDTA  231 (472)
T ss_pred             cCCeeEEecccccchHHHH-HHHHH-HhCcchhhhh
Confidence            9999974    44554333 34556 5899876433

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=94.41  E-value=0.6  Score=41.49  Aligned_cols=135  Identities=16%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             EEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---C-
Q 020428           79 VFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---L-  153 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---g-  153 (326)
                      .+.|.+.+.+++.+.++.+.. ++|.||+-+.+=..            ...+.+.+.+..++..+++|+.+-+|.   | 
T Consensus         1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~------------~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG   68 (224)
T PF01487_consen    1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLEN------------DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG   68 (224)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT------------TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred             CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc------------cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence            367888999999888888777 99999997643211            467788899999998889999998886   2 


Q ss_pred             ---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC----CCCHHHHHHHH---Hh
Q 020428          154 ---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRIK---TA  223 (326)
Q Consensus       154 ---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg----I~s~~d~~~~l---~~  223 (326)
                         .+.+...++.+.+.+.|+++|.|--....       +...-.......+..||++=-    -.+.+++...+   ..
T Consensus        69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~-------~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~  141 (224)
T PF01487_consen   69 RFQGSEEEYLELLERAIRLGPDYIDIELDLFP-------DDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQE  141 (224)
T ss_dssp             SBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCH-------HHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHcCCCEEEEEcccch-------hHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHh
Confidence               24567889999999999999999644211       111112333344667776532    33444444333   24


Q ss_pred             cCCcEEEec
Q 020428          224 AGASSVMAA  232 (326)
Q Consensus       224 ~Gad~VmiG  232 (326)
                      .|||.|=+.
T Consensus       142 ~gadivKia  150 (224)
T PF01487_consen  142 LGADIVKIA  150 (224)
T ss_dssp             TT-SEEEEE
T ss_pred             cCCCeEEEE
Confidence            677755544

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=94.40  E-value=1.1  Score=43.50  Aligned_cols=145  Identities=12%  Similarity=0.081  Sum_probs=93.7

Q ss_pred             CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      .+.|++..+.    |-+|+++++.+..+.. |.|.|  |=|+..|.-        +-+.++-+.+.+.+++..+.++...
T Consensus       137 ~~RPL~~tiiKp~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~--------~p~~~Rv~~~~~a~~~a~~eTG~~~  208 (407)
T TIGR03332       137 HERPLLMSIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGL--------APFEKRITEGKEVLQEVYEQTGHKT  208 (407)
T ss_pred             CCCceeEeEeCCccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHCCcc
Confidence            3457777764    6678888887777666 66766  223332211        1123445556666666666666665


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH--hcCCcEEE----eC--------CCC
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA--ALSIPVIA----NG--------DVF  212 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~--~~~iPVi~----nG--------gI~  212 (326)
                      ..=..+-.+..+..+-++.+.+.|+..+.+.--+.        -|..+..+++  ..++||.+    .|        ||.
T Consensus       209 ~y~~NiT~~~~em~~ra~~a~~~G~~~~mv~~~~~--------G~~~~~~l~~~~~~~lpihaHra~~ga~~r~~~~Gis  280 (407)
T TIGR03332       209 LYAVNLTGRTFDLKDKAKRAAELGADVLLFNVFAY--------GLDVLQSLAEDDEIPVPIMAHPAVSGAYTSSPFYGFS  280 (407)
T ss_pred             eEeecCCCCHHHHHHHHHHHHHhCCCEEEEecccc--------ChHHHHHHHhcCCCCcEEEEecCcccccccCCCCccc
Confidence            55555534455788899999999999998764422        2566777776  45677742    23        555


Q ss_pred             CHHHHHHHHHhcCCcEEEeccc
Q 020428          213 EYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ..--+.++.+..|+|.+.+++.
T Consensus       281 ~~~~l~kl~RLaGaD~~~~~~~  302 (407)
T TIGR03332       281 HSLLLGKLLRYAGADFSLFPSP  302 (407)
T ss_pred             HHHHHHHHHHhcCcCccccCCc
Confidence            4556677888899999999863

Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=94.39  E-value=0.27  Score=45.58  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=59.7

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+....+++.+.+.|+++|.+-|-+.+..+-....+ ++++.+.+.+  ++|||+.-+- +.+++.++.   ++.|||
T Consensus        18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad   96 (289)
T cd00951          18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD   96 (289)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence            35667888999999999999999998877654433322 3445555554  6999976665 555554443   468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus        97 ~v~~~pP~y~~~  108 (289)
T cd00951          97 GILLLPPYLTEA  108 (289)
T ss_pred             EEEECCCCCCCC
Confidence            999987776544

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=94.36  E-value=2.1  Score=38.24  Aligned_cols=136  Identities=12%  Similarity=0.157  Sum_probs=77.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .+...+...++..+.+.++.+.+ |++.|-+..=        +   +.+..+..+-.++++++++.++.++.+-+-. . 
T Consensus         9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~--------d---~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv-~-   75 (229)
T PLN02334          9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDVM--------D---GHFVPNLTIGPPVVKALRKHTDAPLDCHLMV-T-   75 (229)
T ss_pred             eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecc--------c---CCcCCccccCHHHHHHHHhcCCCcEEEEecc-C-
Confidence            35667777787778777777766 8888777320        1   1111111111256777777776676555532 1 


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecc-cCCCCCCcCCHHHHHHHHHhcCCcEEEeCCC-CCHHHHHHHHHhcCCcEEEecc
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRK-VADRPRDPAKWGEIADIVAALSIPVIANGDV-FEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~-~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI-~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                        ++.+....+.++|+|+|++|... ..     ......++++++. ++-+-..-.- +..+.++.+++..|+|.|++|.
T Consensus        76 --~p~d~~~~~~~~gad~v~vH~~q~~~-----d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~  147 (229)
T PLN02334         76 --NPEDYVPDFAKAGASIFTFHIEQAST-----IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMS  147 (229)
T ss_pred             --CHHHHHHHHHHcCCCEEEEeeccccc-----hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEE
Confidence              23445666688999999999872 11     1113455566543 3322222221 3356666666322399999974

>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed

Probab=94.34  E-value=1.5  Score=42.70  Aligned_cols=144  Identities=12%  Similarity=0.085  Sum_probs=93.1

Q ss_pred             CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      .+.|++..+.    |-+|+++++.+..+.. |.|.|  |=|+..+.-        +-+.++-..+.+.+++..+.++...
T Consensus       132 ~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~  203 (407)
T PRK09549        132 HDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENAL--------TPFEKRIVAGKEVLQEVYETTGHKT  203 (407)
T ss_pred             CCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCC--------cCHHHHHHHHHHHHHHHHHhhCCcc
Confidence            4468887764    7789999999888776 67776  223332111        1222344555566666666666655


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH--hcCCcEEE----eC--------CCC
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA--ALSIPVIA----NG--------DVF  212 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~--~~~iPVi~----nG--------gI~  212 (326)
                      ..=..+-.+..+..+-++.+.+.|+..+.+..-+.        -|..+..+++  ..++||.+    .|        ||.
T Consensus       204 ~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~~~~~--------G~~al~~l~~~~~~~lpIhaHra~~ga~~r~~~~Gis  275 (407)
T PRK09549        204 LYAVNLTGRTFELKEKAKRAAEAGADALLFNVFAY--------GLDVLQSLAEDPEIPVPIMAHPAVSGAYTPSPLYGIS  275 (407)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCeEEEecccc--------chHHHHHHHhcCCCCcEEEecCCcccccccCCCCcCc
Confidence            54444434456788889999999999998765432        2566777776  45678762    23        444


Q ss_pred             CHHHHHHHHHhcCCcEEEecc
Q 020428          213 EYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ..--..++.+..|+|.+.++.
T Consensus       276 ~~~~l~kl~RLaGaD~~~~~~  296 (407)
T PRK09549        276 SPLLLGKLLRYAGADFSLFPS  296 (407)
T ss_pred             HHHHHHHHHHHcCCCccccCC
Confidence            444466777789999999985

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=94.32  E-value=1.1  Score=42.15  Aligned_cols=144  Identities=17%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             cCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE-E
Q 020428           72 HQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC-K  149 (326)
Q Consensus        72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v-K  149 (326)
                      +..+.|+++ +-..|.    -.|+++.+ |+|.|=+.-.   .-...-|+-+.+--..+.+...+++|+.....|++| -
T Consensus        31 k~~g~kivm-lTAyD~----~sA~i~d~aGvD~ILVGDS---lgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaD  102 (332)
T PLN02424         31 YRRGEPITM-VTAYDY----PSAVHVDSAGIDVCLVGDS---AAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGD  102 (332)
T ss_pred             HhCCCcEEE-EecCCH----HHHHHHHHcCCCEEEECCc---HHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeC
Confidence            344445543 445552    33455555 8888766311   111223344444456677888888998888899888 7


Q ss_pred             ecCC---CChHHHHHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-----------EeCCC---
Q 020428          150 IRLL---KSSQDTVELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-----------ANGDV---  211 (326)
Q Consensus       150 ~r~g---~~~~~~~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-----------~nGgI---  211 (326)
                      +.-+   .+++++++-|..+ .++|+++|-+-|..       ....+.|+.+. ..+|||+           .-||.   
T Consensus       103 mPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~-------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvq  174 (332)
T PLN02424        103 LPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS-------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQ  174 (332)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc-------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCcccc
Confidence            7665   3577888888777 77999999987653       11245667766 4689999           33552   


Q ss_pred             -CCHHHHHHHH------HhcCCcEEEe
Q 020428          212 -FEYDDFQRIK------TAAGASSVMA  231 (326)
Q Consensus       212 -~s~~d~~~~l------~~~Gad~Vmi  231 (326)
                       .+.+.+.+++      ++.||+++.+
T Consensus       175 Gr~~~~a~~li~dA~ale~AGAf~ivL  201 (332)
T PLN02424        175 GRTAESAVKVVETALALQEAGCFAVVL  201 (332)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence             2344443332      3689988875

>PRK15129 L-Ala-D/L-Glu epimerase; Provisional

Probab=94.28  E-value=2.4  Score=39.88  Aligned_cols=125  Identities=9%  Similarity=0.151  Sum_probs=79.9

Q ss_pred             cEEEEECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~  154 (326)
                      |+..-+...+++++.+.++.. +.|+..+-+-.| |                 +.-.+.++++++.+ ++.+.+-..-+|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~-----------------~~d~~~v~avr~~~~~~~l~vDaN~~w  181 (321)
T PRK15129        120 TTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N-----------------HLISERMVAIRSAVPDATLIVDANESW  181 (321)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C-----------------chHHHHHHHHHHhCCCCeEEEECCCCC
Confidence            444344445677766655544 459988888642 1                 11235677887776 233444444479


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +.+++.++++.+++.++.+|-       |. -.+.+++.+++..  .++||.+.=.+.+..|+..+.  ..+|.|.+
T Consensus       182 ~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~~~~~l~~~~--~~~pia~dEs~~~~~d~~~~~--~~~d~v~~  246 (321)
T PRK15129        182 RAEGLAARCQLLADLGVAMLE-------QP-LPAQDDAALENFI--HPLPICADESCHTRSSLKALK--GRYEMVNI  246 (321)
T ss_pred             CHHHHHHHHHHHHhcCceEEE-------CC-CCCCcHHHHHHhc--cCCCEecCCCCCCHHHHHHHH--hhCCEEEe
Confidence            999999999999999988872       22 2233555554433  479999988899999988874  34565544

>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]

Probab=94.22  E-value=0.96  Score=40.94  Aligned_cols=94  Identities=24%  Similarity=0.350  Sum_probs=67.5

Q ss_pred             CHHH-HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-----------
Q 020428           86 DAVR-ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-----------  152 (326)
Q Consensus        86 ~~~~-~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-----------  152 (326)
                      ++++ +..|++.+++ |++.|-+..|                   +.+.++++.+.+. ++||.--+.+           
T Consensus        91 s~~~a~~nA~r~~ke~gA~aVKlEGG-------------------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGy  150 (268)
T COG0413          91 SPEQALKNAARLMKEAGADAVKLEGG-------------------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGY  150 (268)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEcCC-------------------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCe
Confidence            4554 5556666775 8999988543                   3566777777665 8898876655           


Q ss_pred             ---CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 ---LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 ---g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                         |-+   .+...+-++.++++|+-.+.+-+-          --++.++|.+.++||+|+-|
T Consensus       151 kvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~V----------p~~lA~~IT~~lsiPtIGIG  203 (268)
T COG0413         151 KVQGRTEESAEKLLEDAKALEEAGAFALVLECV----------PAELAKEITEKLSIPTIGIG  203 (268)
T ss_pred             eeecCCHHHHHHHHHHHHHHHhcCceEEEEecc----------HHHHHHHHHhcCCCCEEeec
Confidence               112   235777889999999999988654          23567889999999999877

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=94.17  E-value=0.92  Score=40.36  Aligned_cols=92  Identities=21%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      +++.+.++++.+++..+.|+.+.+..........++++.+.++|+|.|++++.         ...+.++++++ .+++++
T Consensus        37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---------~~~~~~~~~~~-~~i~~i  106 (236)
T cd04730          37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---------PPAEVVERLKA-AGIKVI  106 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---------CCHHHHHHHHH-cCCEEE
Confidence            57778888888887655676666554321135668889999999999999754         12445555554 467877


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ..  +.+.+++.++. +.|+|++.+
T Consensus       107 ~~--v~~~~~~~~~~-~~gad~i~~  128 (236)
T cd04730         107 PT--VTSVEEARKAE-AAGADALVA  128 (236)
T ss_pred             Ee--CCCHHHHHHHH-HcCCCEEEE
Confidence            64  67888888877 589999876

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=94.15  E-value=1.9  Score=38.01  Aligned_cols=127  Identities=16%  Similarity=0.123  Sum_probs=79.2

Q ss_pred             EEEECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428           79 VFQMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        79 ~vQl~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~  157 (326)
                      .++|+|- ++++...+++   .|+|.+-+-+-.+++.          .-.++.+.+|.+.+...+ .+|.|=..     .
T Consensus         4 ~vKICGi~~~eda~~~~~---~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf~~-----~   64 (210)
T PRK01222          4 RVKICGITTPEDAEAAAE---LGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVFVN-----A   64 (210)
T ss_pred             eEEECCCCcHHHHHHHHH---cCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEEeC-----C
Confidence            4788885 5555444433   3788777765333331          135677788877765322 23444332     2


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh-cCCcEEEecc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA-AGASSVMAAR  233 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~-~Gad~VmiGr  233 (326)
                      +..++.+.+++.+.|.|.+||-         .+.+.++.+++..+++||-.=.+.+..++..+.+. ..+|.+++=+
T Consensus        65 ~~~~i~~~~~~~~~d~vQLHg~---------e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds  132 (210)
T PRK01222         65 SDEEIDEIVETVPLDLLQLHGD---------ETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDA  132 (210)
T ss_pred             CHHHHHHHHHhcCCCEEEECCC---------CCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcC
Confidence            4556677788999999999973         13566788887777888866666665565554432 2578777654

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=94.09  E-value=0.78  Score=40.28  Aligned_cols=130  Identities=16%  Similarity=0.207  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C---CChH
Q 020428           83 GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L---KSSQ  157 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g---~~~~  157 (326)
                      ...++++...|.   +.|+|-|||+.+ ..       .| .+--.+    .+++.+++..++||.|=+|.  |   ++..
T Consensus         6 cv~s~~~a~~A~---~~GAdRiELc~~-l~-------~G-GlTPS~----g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~   69 (201)
T PF03932_consen    6 CVESLEDALAAE---AGGADRIELCSN-LE-------VG-GLTPSL----GLIRQAREAVDIPVHVMIRPRGGDFVYSDE   69 (201)
T ss_dssp             EESSHHHHHHHH---HTT-SEEEEEBT-GG-------GT--B---H----HHHHHHHHHTTSEEEEE--SSSS-S---HH
T ss_pred             EeCCHHHHHHHH---HcCCCEEEECCC-cc-------CC-CcCcCH----HHHHHHHhhcCCceEEEECCCCCCccCCHH
Confidence            334444444432   349999999742 10       11 121122    34555566778999888887  3   2333


Q ss_pred             ---HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC---CCCCHHHHHHHHHhcCCcEEE
Q 020428          158 ---DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG---DVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       158 ---~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG---gI~s~~d~~~~l~~~Gad~Vm  230 (326)
                         ...+-++.+.+.|+|++++-.-+.+    +..|.+..+++.+.. +.|+...=   -+.++..+.+.+...|++.|.
T Consensus        70 E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVL  145 (201)
T PF03932_consen   70 EIEIMKEDIRMLRELGADGFVFGALTED----GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVL  145 (201)
T ss_dssp             HHHHHHHHHHHHHHTT-SEEEE--BETT----SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEE
T ss_pred             HHHHHHHHHHHHHHcCCCeeEEEeECCC----CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEE
Confidence               3556677888999999988665544    457888888887754 67877543   345566666555567999886


Q ss_pred             ec
Q 020428          231 AA  232 (326)
Q Consensus       231 iG  232 (326)
                      -.
T Consensus       146 TS  147 (201)
T PF03932_consen  146 TS  147 (201)
T ss_dssp             ES
T ss_pred             CC
Confidence            54

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=94.09  E-value=0.94  Score=41.50  Aligned_cols=127  Identities=19%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc-EEEEecCC---CChHHHHHH-HHHH
Q 020428           93 AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP-VTCKIRLL---KSSQDTVEL-ARRI  166 (326)
Q Consensus        93 aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p-v~vK~r~g---~~~~~~~e~-a~~l  166 (326)
                      .|+++.+ |+|.|=+  |..... ..-|+-....-..+.+...+++|+..++.| |++-+.-+   .+.++.++- .+.+
T Consensus        27 sArl~e~aG~d~i~v--Gds~~~-~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~  103 (264)
T PRK00311         27 FAKLFDEAGVDVILV--GDSLGM-VVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLM  103 (264)
T ss_pred             HHHHHHHcCCCEEEE--CHHHHH-HHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHH
Confidence            3455555 8998853  321111 112233333445677788888888888775 77777533   244554555 4555


Q ss_pred             HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-----------EeCCC----CCHHHHHHHH------HhcC
Q 020428          167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-----------ANGDV----FEYDDFQRIK------TAAG  225 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-----------~nGgI----~s~~d~~~~l------~~~G  225 (326)
                      +++|+++|.+-+..        ...+.|+.+.+ .+|||+           ..||.    +|.+.+.+++      ++.|
T Consensus       104 ~~aGa~aVkiEdg~--------~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAG  174 (264)
T PRK00311        104 KEAGAHAVKLEGGE--------EVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAG  174 (264)
T ss_pred             HHhCCeEEEEcCcH--------HHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCC
Confidence            66999999997631        11244555543 489997           34443    2333333333      3689


Q ss_pred             CcEEEe
Q 020428          226 ASSVMA  231 (326)
Q Consensus       226 ad~Vmi  231 (326)
                      |+++.+
T Consensus       175 A~~i~l  180 (264)
T PRK00311        175 AFALVL  180 (264)
T ss_pred             CCEEEE
Confidence            998866

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=94.07  E-value=1.9  Score=38.35  Aligned_cols=84  Identities=10%  Similarity=0.110  Sum_probs=50.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~  155 (326)
                      ++++=|=..+.++..+.++.+.+..+++++..  |            |+..  .=.++++++++.+ +.+|++-+.+.+-
T Consensus         5 ~livALD~~~~~~A~~l~~~l~~~v~~iKVG~--~------------L~~~--~G~~~i~~lk~~~~~~~IflDlKl~DI   68 (218)
T PRK13305          5 LLQLALDHTSLEAAQRDVTLLKDHVDIVEAGT--I------------LCLN--EGLGAVKALREQCPDKIIVADWKVADA   68 (218)
T ss_pred             CEEEEeCCCCHHHHHHHHHHccccCCEEEECH--H------------HHHH--hCHHHHHHHHHhCCCCEEEEEeecccC
Confidence            56666645667777777777766678888753  1            1110  1124577777665 6677776665433


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      +.+   +++.+.++|+|.+++|+.
T Consensus        69 p~t---v~~~~~~~Gad~~tv~~~   89 (218)
T PRK13305         69 GET---LAQQAFGAGANWMTIICA   89 (218)
T ss_pred             hHH---HHHHHHHcCCCEEEEecC
Confidence            322   344566889998888743

>COG1891 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.03  E-value=1.6  Score=37.22  Aligned_cols=157  Identities=16%  Similarity=0.100  Sum_probs=84.9

Q ss_pred             HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHc
Q 020428           91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKT  169 (326)
Q Consensus        91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~  169 (326)
                      .+|.+.+.-|+|.||+--  |.        -++|-.+...+..-++++... +.+||.-+.-- ..+.+.--.+--..-+
T Consensus        11 eEA~eAieGGAdIiDVKN--P~--------EGSLGANFPWvIr~i~Ev~p~-d~~vSAT~GDvpYKPGT~slAalGaav~   79 (235)
T COG1891          11 EEAIEAIEGGADIIDVKN--PA--------EGSLGANFPWVIREIREVVPE-DQEVSATVGDVPYKPGTASLAALGAAVA   79 (235)
T ss_pred             HHHHHHhhCCCceEeccC--cc--------cCcccCCChHHHHHHHHhCcc-ceeeeeeecCCCCCCchHHHHHHHhHhh
Confidence            445555545899999731  21        233333333332223333222 46777665431 2233333333444567


Q ss_pred             CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeCC-------CCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          170 GVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANGD-------VFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nGg-------I~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      |+|+|-|--.... .  ..-.++.++.+..++     +..|++.|-       --+|=.+-++..+.|||-+|+-+++=.
T Consensus        80 GaDYiKVGLYg~k-n--~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDTaiKD  156 (235)
T COG1891          80 GADYIKVGLYGTK-N--EEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDTAIKD  156 (235)
T ss_pred             CCceEEEeecccc-c--HHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEeccccc
Confidence            9999987422111 0  011245555555444     355676662       122334445556799999999999877


Q ss_pred             CcccccccCCCCHHHHHHHHHHHHHhhc
Q 020428          238 NASIFSSQGKLHWEDVKREYVRKSIFWE  265 (326)
Q Consensus       238 ~P~lf~~~~~~~~~~~~~~~~~~~~~~~  265 (326)
                      .-.+|.-.    .++.+.+|.+.+.+++
T Consensus       157 GkslFdfm----~~e~l~eFvd~Ah~hG  180 (235)
T COG1891         157 GKSLFDFM----DEEELEEFVDLAHEHG  180 (235)
T ss_pred             chhHHhhh----cHHHHHHHHHHHHHcc
Confidence            77777752    2345667888777654

>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=94.02  E-value=0.52  Score=40.62  Aligned_cols=64  Identities=17%  Similarity=0.176  Sum_probs=49.2

Q ss_pred             CcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh-cCCcEEEeccch
Q 020428          171 VSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA-AGASSVMAARGA  235 (326)
Q Consensus       171 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~-~Gad~VmiGr~~  235 (326)
                      .+.+.||+-..++.. ...|-+++.++-+.+++|+.+.||+++.+|++.+-+. .|---+-+|+++
T Consensus       176 ~~EFLiHaaDVEGlc-~GIDE~LV~kLgew~kip~tYAGG~~s~dDl~lvd~lskGkVDlT~GSaL  240 (263)
T KOG3055|consen  176 SDEFLIHAADVEGLC-LGIDEELVAKLGEWSKIPVTYAGGVTSMDDLELVDDLSKGKVDLTVGSAL  240 (263)
T ss_pred             chhheeeccccchhh-cCccHHHHHHhccceecceEEecCceehhHHHHHHhhcCCceeEEecchh
Confidence            677889988776553 4568899999999999999999999999999877532 233336677764

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=93.97  E-value=0.64  Score=42.41  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHH
Q 020428           86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      +.+...+.|.. +++|+|.||||+-...+..    -+-.-....+.+..+++.+++.+++||++-..   +    .+.++
T Consensus        22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~----~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~---~----~~v~e   90 (257)
T cd00739          22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGA----DPVSVEEELERVIPVLEALRGELDVLISVDTF---R----AEVAR   90 (257)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCC----CCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC---C----HHHHH
Confidence            55655555554 4559999999864443311    01111223445666788898888999998763   1    34555


Q ss_pred             HHHHcCCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428          165 RIEKTGVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIAN  208 (326)
Q Consensus       165 ~l~~~G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n  208 (326)
                      ...++|++.|. +.+..        .+ +.+..+.+..+.|+|+.
T Consensus        91 ~al~~G~~iINdisg~~--------~~-~~~~~l~~~~~~~vV~m  126 (257)
T cd00739          91 AALEAGADIINDVSGGS--------DD-PAMLEVAAEYGAPLVLM  126 (257)
T ss_pred             HHHHhCCCEEEeCCCCC--------CC-hHHHHHHHHcCCCEEEE
Confidence            55666888765 44331        11 23334444557777764

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=93.93  E-value=0.88  Score=40.65  Aligned_cols=116  Identities=17%  Similarity=0.251  Sum_probs=79.4

Q ss_pred             ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHH
Q 020428          116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIA  195 (326)
Q Consensus       116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~  195 (326)
                      ...+.|-.+..+.+.+.++++.+++. ++.||+=+-  ++    .+-++...+.|+|.|-+|-..-...+........+.
T Consensus        97 ~TTegGldv~~~~~~l~~~i~~l~~~-gI~VSLFiD--Pd----~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~  169 (234)
T cd00003          97 LTTEGGLDVAGQAEKLKPIIERLKDA-GIRVSLFID--PD----PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELE  169 (234)
T ss_pred             ccCCccchhhcCHHHHHHHHHHHHHC-CCEEEEEeC--CC----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHH
Confidence            35667778888999999999999886 888887663  22    345677788999999998554332322221122233


Q ss_pred             HHH------HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          196 DIV------AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       196 ~i~------~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +++      ...++-|=+.-|+ +++.+..+.+--+..=|-||.+++.+-
T Consensus       170 ~i~~aa~~a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~A  218 (234)
T cd00003         170 RIAKAAKLARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRA  218 (234)
T ss_pred             HHHHHHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence            333      3357777777777 477777776666788899998877654

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=93.92  E-value=0.4  Score=44.06  Aligned_cols=85  Identities=20%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHH---HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRI---KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~---l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-+.+...-.... .++++.+++.+  ++||++.-+=.+.+++.++   .++.|+|
T Consensus        15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad   94 (281)
T cd00408          15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD   94 (281)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence            4567788999999999999999998877654433222 34455566655  6898755444444444333   3468999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      +||+....+..
T Consensus        95 ~v~v~pP~y~~  105 (281)
T cd00408          95 GVLVVPPYYNK  105 (281)
T ss_pred             EEEECCCcCCC
Confidence            99998776544

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=93.85  E-value=0.24  Score=45.15  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+..++|+.++++||++|.|---  ...+  ...++.+..+++.+++||...-=|.++.++.+.. ..|||+|.+=-++|
T Consensus        68 ~d~~~~a~~y~~~GA~aiSVlTe--~~~F--~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~-~~GADaVLLI~~~L  142 (254)
T PF00218_consen   68 FDPAEIAKAYEEAGAAAISVLTE--PKFF--GGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEAR-AAGADAVLLIAAIL  142 (254)
T ss_dssp             -SHHHHHHHHHHTT-SEEEEE----SCCC--HHHHHHHHHHHHHSSS-EEEES---SHHHHHHHH-HTT-SEEEEEGGGS
T ss_pred             CCHHHHHHHHHhcCCCEEEEECC--CCCC--CCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHH-HcCCCEeehhHHhC
Confidence            47899999999999999988532  1122  2258889999999999999999999999999999 69999998876666


Q ss_pred             cCc
Q 020428          237 WNA  239 (326)
Q Consensus       237 ~~P  239 (326)
                      .+-
T Consensus       143 ~~~  145 (254)
T PF00218_consen  143 SDD  145 (254)
T ss_dssp             GHH
T ss_pred             CHH
Confidence            543

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PLN02417 dihydrodipicolinate synthase

Probab=93.84  E-value=0.4  Score=44.24  Aligned_cols=86  Identities=15%  Similarity=0.047  Sum_probs=56.7

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-+.+...-... ..+.++.+.+.+  ++||++.=|=.+.+++.++.   +..|+|
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad   98 (280)
T PLN02417         19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH   98 (280)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence            456778899999999999999999988764432221 123444445544  58988654444444444432   368999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +||+.-..+..|
T Consensus        99 av~~~~P~y~~~  110 (280)
T PLN02417         99 AALHINPYYGKT  110 (280)
T ss_pred             EEEEcCCccCCC
Confidence            999987655443

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=93.84  E-value=1.7  Score=40.02  Aligned_cols=84  Identities=13%  Similarity=0.165  Sum_probs=56.8

Q ss_pred             HHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC-hHHHHHHHHHHHHcCC
Q 020428           94 AKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS-SQDTVELARRIEKTGV  171 (326)
Q Consensus        94 a~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~-~~~~~e~a~~l~~~G~  171 (326)
                      |+++++ ||.++-+..+ +...  .-|+.-.=....+.+.+.++.+.+++++||+|-+-.|+. ..+..+.++.++++|+
T Consensus        31 A~la~~aGF~al~~sg~-~vA~--slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~  107 (289)
T COG2513          31 ALLAERAGFKALYLSGA-GVAA--SLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGA  107 (289)
T ss_pred             HHHHHHcCCeEEEeccH-HHHH--hcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCc
Confidence            445555 8988887532 1110  000000001225677888888999999999999998753 6778888999999999


Q ss_pred             cEEEEeecc
Q 020428          172 SALAVHGRK  180 (326)
Q Consensus       172 d~i~vh~r~  180 (326)
                      .++++-.-.
T Consensus       108 agi~iEDq~  116 (289)
T COG2513         108 AGIHIEDQV  116 (289)
T ss_pred             ceeeeeecc
Confidence            999986543

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=93.81  E-value=0.78  Score=42.86  Aligned_cols=72  Identities=13%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             HHHHHHHHH------cCCcEEEEeec--ccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          160 VELARRIEK------TGVSALAVHGR--KVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       160 ~e~a~~l~~------~G~d~i~vh~r--~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      .+-+..+.+      +|+|.|.+...  +..+..   .+.+.+++..+.+  ..|+.++|||+ .+.+.++. .+|+|.+
T Consensus       213 leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~---~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA-~tGVD~I  287 (308)
T PLN02716        213 LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGD---VDVSMLKEAVELINGRFETEASGNVT-LDTVHKIG-QTGVTYI  287 (308)
T ss_pred             HHHHHHHHHhcccccCCCCEEEeCCCcccccccC---CCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHH-HcCCCEE
Confidence            444555556      89999999877  323221   1345555554433  47899999996 88888888 6999999


Q ss_pred             Eeccchh
Q 020428          230 MAARGAL  236 (326)
Q Consensus       230 miGr~~l  236 (326)
                      .+|.-..
T Consensus       288 s~Galth  294 (308)
T PLN02716        288 SSGALTH  294 (308)
T ss_pred             EeCcccc
Confidence            9997443

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=93.81  E-value=0.69  Score=42.80  Aligned_cols=85  Identities=11%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCCc
Q 020428          131 IHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSIP  204 (326)
Q Consensus       131 ~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~iP  204 (326)
                      +.+.++.+++.. ..+|.|-+       ++.+-++.+.++|+|.|.+...+          .+.++++.+.     .++.
T Consensus       176 i~~av~~~r~~~~~~kIeVEv-------~tleqa~ea~~agaDiI~LDn~~----------~e~l~~av~~~~~~~~~~~  238 (284)
T PRK06096        176 WSGAINQLRRHAPEKKIVVEA-------DTPKEAIAALRAQPDVLQLDKFS----------PQQATEIAQIAPSLAPHCT  238 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhhccCCCeE
Confidence            445666666654 34466655       35666777778999999995442          2333333332     3677


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +-++|||+ ++.+.++. .+|+|.+.+|.-
T Consensus       239 leaSGGI~-~~ni~~yA-~tGvD~Is~gal  266 (284)
T PRK06096        239 LSLAGGIN-LNTLKNYA-DCGIRLFITSAP  266 (284)
T ss_pred             EEEECCCC-HHHHHHHH-hcCCCEEEECcc
Confidence            89999995 88888888 699999988864

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=93.79  E-value=0.34  Score=44.98  Aligned_cols=86  Identities=16%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             CChHHHHHHHHHHHH-cCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCC
Q 020428          154 KSSQDTVELARRIEK-TGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGA  226 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Ga  226 (326)
                      .|.+...++++.+.+ .|++.|.+-|-+.+...-... ..++++.+.+.+  ++||++.=|-.+.+++.++.   ++.||
T Consensus        21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga  100 (293)
T PRK04147         21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY  100 (293)
T ss_pred             cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            456778899999999 999999999987764432222 233445555554  58988765545555554442   46899


Q ss_pred             cEEEeccchhcCc
Q 020428          227 SSVMAARGALWNA  239 (326)
Q Consensus       227 d~VmiGr~~l~~P  239 (326)
                      |+||+-.+.+..|
T Consensus       101 d~v~v~~P~y~~~  113 (293)
T PRK04147        101 DAISAVTPFYYPF  113 (293)
T ss_pred             CEEEEeCCcCCCC
Confidence            9999998877665

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=93.77  E-value=0.42  Score=44.69  Aligned_cols=85  Identities=19%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-+.+...-.... .+.++.+++.+  ++|||+.-|- +.+++.++.   +..|+|
T Consensus        25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad  103 (303)
T PRK03620         25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD  103 (303)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence            4567788999999999999999998877755433322 33455555555  6899865553 555544433   468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +||+-...+..|
T Consensus       104 av~~~pP~y~~~  115 (303)
T PRK03620        104 GILLLPPYLTEA  115 (303)
T ss_pred             EEEECCCCCCCC
Confidence            999987665443

>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain

Probab=93.77  E-value=2.4  Score=40.65  Aligned_cols=145  Identities=12%  Similarity=0.122  Sum_probs=91.8

Q ss_pred             CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      .+.|++.-+.    |-+|+++++.+..+.. |.|.|  |=+++.|.-        +-+.++-..+.+.++...+.++...
T Consensus       125 ~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~  196 (366)
T cd08148         125 YGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQPF--------CPLRDRITEVAAALDRVQEETGEKK  196 (366)
T ss_pred             CCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCCC--------CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence            3568887763    7789999999988776 67766  222321110        1122344455555555555666554


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEE----eCCC-------CC
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIA----NGDV-------FE  213 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~----nGgI-------~s  213 (326)
                      ..-..+-.+.++..+-++.+.++|+..+.|..-+.        -|..+..+++.  .++||.+    .|-+       .+
T Consensus       197 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~l~IhaHrA~~ga~~~~~~~G~~  268 (366)
T cd08148         197 LYAVNVTAGTFEIIERAERALELGANMLMVDVLTA--------GFSALQALAEDFEIDLPIHVHRAMHGAVTRSKFHGIS  268 (366)
T ss_pred             eEEEEccCCHHHHHHHHHHHHHhCCCEEEEecccc--------chHHHHHHHHhCcCCcEEEeccccccccccCCCCCcC
Confidence            44344434457888999999999999988865432        25667777763  4777752    3322       23


Q ss_pred             HHHHHHHHHhcCCcEEEeccc
Q 020428          214 YDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       214 ~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .--..++.+..|||.+.+++.
T Consensus       269 ~~~l~kl~RLaGaD~~~~~t~  289 (366)
T cd08148         269 MLVLAKLLRMAGGDFIHTGTV  289 (366)
T ss_pred             HHHHHHHHHHcCCCccccCCc
Confidence            455667777899999999864

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=93.77  E-value=1.1  Score=40.20  Aligned_cols=115  Identities=12%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             cccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428          117 SGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       117 ~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                      ..+.|-.+..+.+.+.++++.++++ ++.||.=+-  ++    .+-++...+.|+|.|-+|-..-...+......+.+.+
T Consensus        98 TTegGldv~~~~~~l~~~i~~l~~~-gI~VSLFiD--P~----~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~  170 (237)
T TIGR00559        98 TTEGGLDVARLKDKLCELVKRFHAA-GIEVSLFID--AD----KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQR  170 (237)
T ss_pred             cCCcCchhhhCHHHHHHHHHHHHHC-CCEEEEEeC--CC----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHH
Confidence            4567777888999999999999776 788877653  22    3456778889999999985543322222111222333


Q ss_pred             HH------HhcCCcEEEeCCCCCHHHHHHHHHhcC-CcEEEeccchhcCc
Q 020428          197 IV------AALSIPVIANGDVFEYDDFQRIKTAAG-ASSVMAARGALWNA  239 (326)
Q Consensus       197 i~------~~~~iPVi~nGgI~s~~d~~~~l~~~G-ad~VmiGr~~l~~P  239 (326)
                      ++      ...++-|-+.-|++ ++.+..+.+..+ .+=|-||.+++.+-
T Consensus       171 i~~aa~~A~~lGL~VnAGHgLn-y~Nv~~i~~~~~~i~EvnIGHsiia~A  219 (237)
T TIGR00559       171 IVKASVHAHSLGLKVNAGHGLN-YHNVKYFAEILPYLDELNIGHAIIADA  219 (237)
T ss_pred             HHHHHHHHHHcCCEEecCCCCC-HHhHHHHHhCCCCceEEecCHHHHHHH
Confidence            33      33577777777774 777777765556 88999999877654

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=93.72  E-value=2.4  Score=37.14  Aligned_cols=119  Identities=15%  Similarity=0.147  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC--C---hHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK--S---SQDT  159 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~--~---~~~~  159 (326)
                      +++-+...|+.+.+ |+.+|-+|.                       .+=+++++..+++||.=-+....  +   ..-+
T Consensus        31 ~~~iv~~mA~Aa~~gGAvgiR~~g-----------------------v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITpt   87 (229)
T COG3010          31 SPEIVAAMALAAEQGGAVGIRIEG-----------------------VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPT   87 (229)
T ss_pred             chhHHHHHHHHHHhCCcceEeecc-----------------------hhhHHHHHhhCCCCeEEEEecCCCCCCceeccc
Confidence            45666666766666 788888872                       12267889999999874443321  1   1246


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+-++.|.++|++-|.+.+-.+. ++.+  +. +++.+ .+.  --..+--|+.|.++...+. +.|+|.|  |+-+.
T Consensus        88 lkeVd~L~~~Ga~IIA~DaT~R~-RP~~--~~~~~i~~-~k~--~~~l~MAD~St~ee~l~a~-~~G~D~I--GTTLs  156 (229)
T COG3010          88 LKEVDALAEAGADIIAFDATDRP-RPDG--DLEELIAR-IKY--PGQLAMADCSTFEEGLNAH-KLGFDII--GTTLS  156 (229)
T ss_pred             HHHHHHHHHCCCcEEEeecccCC-CCcc--hHHHHHHH-hhc--CCcEEEeccCCHHHHHHHH-HcCCcEE--ecccc
Confidence            77788999999999888754433 3333  23 33333 222  2256677999999999999 6999964  65544

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=93.72  E-value=0.39  Score=45.06  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+........ .+.++.+++.+  ++|||+.=+=.+.+++.++.   ++.|||
T Consensus        26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad  105 (309)
T cd00952          26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD  105 (309)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence            3566788899999999999999998887754432222 23444555544  59988655444445554443   457999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +||+-...+..|
T Consensus       106 ~vlv~~P~y~~~  117 (309)
T cd00952         106 GTMLGRPMWLPL  117 (309)
T ss_pred             EEEECCCcCCCC
Confidence            999998876544

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=93.70  E-value=3.5  Score=40.87  Aligned_cols=175  Identities=14%  Similarity=0.090  Sum_probs=96.0

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCCCHHHHH
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRAL   91 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~   91 (326)
                      .+|.|+..-...|.+.|++.+.  |+....   +.|.          +..+.-+.+....+  -.+++| +...+++...
T Consensus       261 ICGit~~eda~~a~~~GaD~lG--fIf~~~---SpR~----------V~~~~a~~i~~~l~--v~~VgV-fv~~~~~~i~  322 (454)
T PRK09427        261 VCGLTRPQDAKAAYDAGAVYGG--LIFVEK---SPRY----------VSLEQAQEIIAAAP--LRYVGV-FRNADIEDIV  322 (454)
T ss_pred             cCCCCCHHHHHHHHhCCCCEEe--eEeCCC---CCCC----------CCHHHHHHHHHhCC--CCEEEE-EeCCCHHHHH
Confidence            3678888888888899986653  221000   0000          00000000122222  112332 1245666666


Q ss_pred             HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428           92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKT  169 (326)
Q Consensus        92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~  169 (326)
                      +.++.+  +.|.|.||..                .+|+++    +.+++..  ++++.--++.... .+      ..+..
T Consensus       323 ~i~~~~--~lD~vQLHG~----------------e~~~~~----~~l~~~~~~~~~iikai~v~~~-~~------~~~~~  373 (454)
T PRK09427        323 DIAKQL--SLAAVQLHGD----------------EDQAYI----DALREALPKTCQIWKAISVGDT-LP------ARDLQ  373 (454)
T ss_pred             HHHHHc--CCCEEEeCCC----------------CCHHHH----HHHHhhcCCCCeEEEEeecCch-hh------hhhhc
Confidence            655432  6799999852                234443    3444332  2444433443211 11      11234


Q ss_pred             CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          170 GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++|++.+..  ..++.....||..+...   .+.|++..||++ ++.+.+++ ..+..||=+.+|.=..|.
T Consensus       374 ~~d~~LlDs--~~GGtG~~~DW~~l~~~---~~~p~iLAGGL~-peNV~~ai-~~~P~gVDVsSGVE~~pG  437 (454)
T PRK09427        374 HVDRYLLDN--GQGGTGQTFDWSLLPGQ---SLDNVLLAGGLN-PDNCQQAA-QLGCAGLDFNSGVESAPG  437 (454)
T ss_pred             CCCEEEEcC--CCCCCCCccChHHhhhc---ccCCEEEECCCC-HHHHHHHH-hcCCCEEEeCCcccCCCC
Confidence            689998886  22233346789877532   267999999996 77777777 588999999999755554

>PRK15452 putative protease; Provisional

Probab=93.62  E-value=4.7  Score=39.84  Aligned_cols=118  Identities=8%  Similarity=0.023  Sum_probs=78.6

Q ss_pred             hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh---HHHHHHHHHHHHcCCcEE
Q 020428           98 CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS---QDTVELARRIEKTGVSAL  174 (326)
Q Consensus        98 ~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~---~~~~e~a~~l~~~G~d~i  174 (326)
                      ..|+|.|=+....-........     + ..+.+.+.++..++. ++.|.+.+..-...   ....+..+.+.+.|+|+|
T Consensus        21 ~~GADaVY~G~~~~~~R~~~~~-----f-~~edl~eav~~ah~~-g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgv   93 (443)
T PRK15452         21 AYGADAVYAGQPRYSLRVRNNE-----F-NHENLALGINEAHAL-GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDAL   93 (443)
T ss_pred             HCCCCEEEECCCccchhhhccC-----C-CHHHHHHHHHHHHHc-CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence            3589999885432221111111     1 235567777766554 77888877654332   346666777789999999


Q ss_pred             EEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC--CCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          175 AVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG--DVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       175 ~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG--gI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +|.            |+..+..+++.. ++||.+.-  .|++...+..+. +.|++.|.+.|-+
T Consensus        94 IV~------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~-~lG~~rvvLSrEL  144 (443)
T PRK15452         94 IMS------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQ-QMGLTRVILSREL  144 (443)
T ss_pred             EEc------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHH-HCCCcEEEECCcC
Confidence            996            456666677653 78887654  678888887776 6899999999876

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=93.52  E-value=0.73  Score=43.21  Aligned_cols=90  Identities=23%  Similarity=0.288  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      .|+.+.+-++++++.++.|+.+.+....  ....+.++.+.+.|++.|.+++.       .|  .+.++++++. +++|+
T Consensus        46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g-------~p--~~~i~~lk~~-g~~v~  113 (307)
T TIGR03151        46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAG-------NP--GKYIPRLKEN-GVKVI  113 (307)
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCC-------Cc--HHHHHHHHHc-CCEEE
Confidence            5889999999999888899888775421  12345667777899999987532       11  3578888765 78777


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +  .|.|.+.+.++. +.|+|+|.+
T Consensus       114 ~--~v~s~~~a~~a~-~~GaD~Ivv  135 (307)
T TIGR03151       114 P--VVASVALAKRME-KAGADAVIA  135 (307)
T ss_pred             E--EcCCHHHHHHHH-HcCCCEEEE
Confidence            4  788999998888 689999987

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=93.51  E-value=2.3  Score=37.07  Aligned_cols=122  Identities=22%  Similarity=0.252  Sum_probs=71.6

Q ss_pred             EECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHH
Q 020428           81 QMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        81 Ql~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~  158 (326)
                      +++|- ++++...++   ..|+|.|.+-+-.+++.          .-+++.+.++.+.+.... .++|++.-       +
T Consensus         2 KiCGi~~~ed~~~a~---~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn~-------~   61 (203)
T cd00405           2 KICGITTLEDALAAA---EAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVNE-------D   61 (203)
T ss_pred             EECCCCCHHHHHHHH---HcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeCC-------C
Confidence            45664 344444433   24889888865433221          124566666666665421 34444432       2


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-hcCCcEEEe
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT-AAGASSVMA  231 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~-~~Gad~Vmi  231 (326)
                      ..++.+.+.+.|+|.|++|+-.         +.+.+..+++..+.+++-.=++.+..+...... ..++|.+.+
T Consensus        62 ~~~i~~ia~~~~~d~Vqlhg~e---------~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~  126 (203)
T cd00405          62 LEEILEIAEELGLDVVQLHGDE---------SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILL  126 (203)
T ss_pred             HHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence            4456667778899999999752         235677777776777774445666655543221 368999965

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=93.48  E-value=0.48  Score=43.97  Aligned_cols=86  Identities=15%  Similarity=0.082  Sum_probs=58.5

Q ss_pred             CChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEe-CCCCCHHHHH--HHHHhcCC
Q 020428          154 KSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIAN-GDVFEYDDFQ--RIKTAAGA  226 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~--~~l~~~Ga  226 (326)
                      .|.+...+.++.+.+.| +++|.+.|-+.+..+-.... .+.++.+++.+  ++||++. |+..+.+.++  +..++.|+
T Consensus        18 iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Ga   97 (290)
T TIGR00683        18 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY   97 (290)
T ss_pred             cCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCC
Confidence            45667888999999999 99999999887755433322 23344455544  5898755 6665544443  22346899


Q ss_pred             cEEEeccchhcCc
Q 020428          227 SSVMAARGALWNA  239 (326)
Q Consensus       227 d~VmiGr~~l~~P  239 (326)
                      |+||+....+..|
T Consensus        98 d~v~v~~P~y~~~  110 (290)
T TIGR00683        98 DCLSAVTPFYYKF  110 (290)
T ss_pred             CEEEEeCCcCCCC
Confidence            9999987766554

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III

Probab=93.45  E-value=2.4  Score=41.37  Aligned_cols=144  Identities=7%  Similarity=0.062  Sum_probs=94.2

Q ss_pred             CCCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG----TSDAVRALTAAKMVCK-DVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      .+.|++..+.    |-+|+++++.+..+.. |.|.|  |=|+..|.        -+-+.++.+.+.+.++...+.++...
T Consensus       130 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~--------~~p~~eRv~~~~~a~~~a~~eTG~~~  201 (414)
T cd08206         130 YGRPLLGTIVKPKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQP--------FMRFEDRILFVAEAMDKAEAETGEAK  201 (414)
T ss_pred             CCCceEEEecccccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC--------CCcHHHHHHHHHHHHHHHHHhhCCcc
Confidence            3468887774    7789999999988776 77776  22332111        11223445556666666666666654


Q ss_pred             EEEecC-CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh---cCCcEEE----eC--------C
Q 020428          147 TCKIRL-LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA---LSIPVIA----NG--------D  210 (326)
Q Consensus       147 ~vK~r~-g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~---~~iPVi~----nG--------g  210 (326)
                      ..=..+ +.+.++..+-++.+.+.|+..+.+..-+.        -|..+..+++.   .++||.+    .|        |
T Consensus       202 ~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~~l~ih~HrA~~ga~~~~~~~G  273 (414)
T cd08206         202 GHYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTA--------GWTAIQSARRWCPDNGLALHAHRAGHAAFTRQKNHG  273 (414)
T ss_pred             eEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeecc--------cHHHHHHHHHhccccCeEEEEccccceecccCCCCc
Confidence            444444 34478889999999999999988865432        25667777763   4677652    33        4


Q ss_pred             CCCHHHHHHHHHhcCCcEEEeccc
Q 020428          211 VFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      |.. .-+.++.+..|+|.+.+++.
T Consensus       274 is~-~vl~kl~RLaGaD~ih~~t~  296 (414)
T cd08206         274 ISM-RVLAKLARLIGVDHIHTGTV  296 (414)
T ss_pred             CcH-HHHHHHHHHcCCCccccCCC
Confidence            444 44777787899999999864

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=93.42  E-value=0.77  Score=40.52  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428           91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTCKIRLLKSSQDTVELARRIEKT  169 (326)
Q Consensus        91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~vK~r~g~~~~~~~e~a~~l~~~  169 (326)
                      .+|.+.+++|++.||||.+.-.|..    .........+.+..+++++++ ..++||++-..   +    .++++...++
T Consensus        23 ~~a~~~~~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~---~----~~v~~~aL~~   91 (210)
T PF00809_consen   23 KRAREQVEAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTF---N----PEVAEAALKA   91 (210)
T ss_dssp             HHHHHHHHTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES---S----HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC---C----HHHHHHHHHc
Confidence            3444455569999999988644421    111222345577777888876 55899999884   1    2334444445


Q ss_pred             CCcEEE
Q 020428          170 GVSALA  175 (326)
Q Consensus       170 G~d~i~  175 (326)
                      |++.|.
T Consensus        92 g~~~in   97 (210)
T PF00809_consen   92 GADIIN   97 (210)
T ss_dssp             TSSEEE
T ss_pred             CcceEE
Confidence            888754

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II

Probab=93.40  E-value=2.9  Score=39.57  Aligned_cols=147  Identities=7%  Similarity=-0.024  Sum_probs=92.4

Q ss_pred             CCCCcEEEEE-CCC--CHHHHHHHHHHhhcC-----------CCEEEEccCCCccccccccccccccCChHHHHHHHHHH
Q 020428           73 QERNHVVFQM-GTS--DAVRALTAAKMVCKD-----------VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTML  138 (326)
Q Consensus        73 ~~~~p~~vQl-~g~--~~~~~~~aa~~~~~~-----------~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v  138 (326)
                      .-+.|+++.| .|.  +.+...++   +..|           |+.|-+           ++.--.+..|.+...++++..
T Consensus        83 ~~~VPV~lHLDH~~~~~~e~i~~a---i~~G~~~~~~~~~~~FsSVMi-----------DgS~l~~eeNi~~T~~vve~A  148 (340)
T cd00453          83 HYGVPVILHTDHCAKKLLPWIDGL---LDAGEKHFAATGKPLFSSHMI-----------DLSEESLQENIEICSKYLERM  148 (340)
T ss_pred             HCCCCEEEEcCCCCCCCHHHHHHH---HHcCCccccccCCCCceeEEe-----------cCCCCCHHHHHHHHHHHHHHH
Confidence            3457999999 455  54444433   3335           444433           222233455666777777666


Q ss_pred             hhcccCcEEEEecC--CCC-h------------HHHHHHHHHHHHcC----CcEEEEeecccCCCCC---CcCCHHHHHH
Q 020428          139 KRNLDVPVTCKIRL--LKS-S------------QDTVELARRIEKTG----VSALAVHGRKVADRPR---DPAKWGEIAD  196 (326)
Q Consensus       139 ~~~~~~pv~vK~r~--g~~-~------------~~~~e~a~~l~~~G----~d~i~vh~r~~~~~~~---~~~~~~~i~~  196 (326)
                      ... ++.|-.-+..  |.+ .            .++.+..+.+++.|    +|.|.+.-.|..+.|.   ...+++.+++
T Consensus       149 h~~-gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~  227 (340)
T cd00453         149 SKI-GMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRD  227 (340)
T ss_pred             HHc-CCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHH
Confidence            544 5555544432  110 0            12556666777889    9999875555555553   3468999999


Q ss_pred             HHHhc---------CCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccch
Q 020428          197 IVAAL---------SIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       197 i~~~~---------~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      |.+.+         ++|++.-||=.++ +++.+++ ..|+.-|=+++.+
T Consensus       228 i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai-~~Gi~KiNi~Te~  275 (340)
T cd00453         228 SQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSV-SYGVVKMNIDTDT  275 (340)
T ss_pred             HHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHH-HcCCeEEEcccHH
Confidence            99988         7999988876665 5566777 6898888888764

This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=93.39  E-value=4  Score=39.56  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             EEEEC--CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCC
Q 020428           79 VFQMG--TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLK  154 (326)
Q Consensus        79 ~vQl~--g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~  154 (326)
                      -+|+.  ..+.++..+.++.+.+ +.+.+++..  |            |+.  .+=.++++++++. .+.+|.+-+.+. 
T Consensus       174 ~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~--~------------L~~--~~G~~iVk~Lr~~~~~~~I~~DLK~~-  236 (391)
T PRK13307        174 YLQVALDLPDLEEVERVLSQLPKSDHIIIEAGT--P------------LIK--KFGLEVISKIREVRPDAFIVADLKTL-  236 (391)
T ss_pred             eEEEecCCCCHHHHHHHHHhcccccceEEEECH--H------------HHH--HhCHHHHHHHHHhCCCCeEEEEeccc-
Confidence            45553  4566667776666654 256677642  2            111  1113567777776 466777766542 


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHH-HHHHHHHhcCCcEEE-eCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWG-EIADIVAALSIPVIA-NGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~-~i~~i~~~~~iPVi~-nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +..+++  ++.+.++|+|++++|+...      ..... .++.++ ..++-+.. .=+..|+.+..+.+ ..++|.|.+.
T Consensus       237 Di~~~v--v~~~a~aGAD~vTVH~ea~------~~ti~~ai~~ak-k~GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllh  306 (391)
T PRK13307        237 DTGNLE--ARMAADATADAVVISGLAP------ISTIEKAIHEAQ-KTGIYSILDMLNVEDPVKLLESL-KVKPDVVELH  306 (391)
T ss_pred             ChhhHH--HHHHHhcCCCEEEEeccCC------HHHHHHHHHHHH-HcCCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEc
Confidence            333332  7788899999999998521      11122 333343 34555554 44455665554444 4789999999


Q ss_pred             cch
Q 020428          233 RGA  235 (326)
Q Consensus       233 r~~  235 (326)
                      ++.
T Consensus       307 t~v  309 (391)
T PRK13307        307 RGI  309 (391)
T ss_pred             ccc
Confidence            853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
1vhn_A	318	Crystal Structure Of A Putative Flavin Oxidoreducta		3e-16
3b0p_A	350	Trna-Dihydrouridine Synthase From Thermus Thermophi		6e-08
3b0v_C	363	Trna-Dihydrouridine Synthase From Thermus Thermophi		9e-07

>pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 19/237 (8%)
Query: 6   KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
           K+ LAP        FR LA ++GAD  + E +     L   ++  E +            
Sbjct: 6   KVGLAPXAGYTDSAFRTLAFEWGADFAFSEXVSAKGFLXNSQKTEELLPQP--------- 56
Query: 66  VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
                   ERN V  Q+  S+      AA+++ +    ID+N GCP    V  G G ALL
Sbjct: 57  -------HERN-VAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALL 108
Query: 126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
                   I+  L++++    + K RL     +  E+ R + + GV  + +H R V    
Sbjct: 109 KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSF 168
Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF 242
              A+W  ++  V    IP   +GD+F  +D +R    +G   ++ ARGA+    IF
Sbjct: 169 TGRAEWKALS--VLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF 223

>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 26/181 (14%)
Query: 6   KLVLAPMVRVGTLPFRLLAAQYGADIT-YGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
           +L +APMV      FR L  Q    +  Y E  +D  +L+  R                 
Sbjct: 5   RLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNR---------------ER 49
Query: 65  SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKSFSVSGGMGA 122
            + FR    E + +  Q+  SD  ++L  A  + +      I++N+GCP   +  GG GA
Sbjct: 50  LLAFRP---EEHPIALQLAGSDP-KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGA 105
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE-LARRIE---KTGVSALAVHG 178
            LL     + +IL  +   + VPVT K+RL    ++T   LA+ +E   + GV    VH 
Sbjct: 106 CLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHA 165
Query: 179 R 179
           R
Sbjct: 166 R 166

>pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 26/181 (14%)
Query: 6   KLVLAPMVRVGTLPFRLLAAQYGADIT-YGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
           +L +AP V      FR L  Q    +  Y E  +D  +L+  R                 
Sbjct: 26  RLSVAPXVDRTDRHFRFLVRQVSLGVRLYTEXTVDQAVLRGNR---------------ER 70
Query: 65  SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA--AIDINMGCPKSFSVSGGMGA 122
            + FR    E + +  Q+  SD  ++L  A  + +      I++N+GCP   +  GG GA
Sbjct: 71  LLAFRP---EEHPIALQLAGSDP-KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGA 126
Query: 123 ALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE-LARRIE---KTGVSALAVHG 178
            LL     + +IL      + VPVT K RL    ++T   LA+ +E   + GV    VH 
Sbjct: 127 CLLLDLARVREILKAXGEAVRVPVTVKXRLGLEGKETYRGLAQSVEAXAEAGVKVFVVHA 186
Query: 179 R 179
           R
Sbjct: 187 R 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	8e-49
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	1e-05
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	1e-04
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	9e-04

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318

 Score =  164 bits (418), Expect = 8e-49
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 19/239 (7%)

Query: 5   NKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTD 64
            K+ LAPM       FR LA ++GAD  + E +     L   ++  E +           
Sbjct: 5   VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL----------- 53

Query: 65  SVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAAL 124
                    ERN  V Q+  S+      AA+++ +    ID+N GCP    V  G G AL
Sbjct: 54  -----PQPHERNVAV-QIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGAL 107

Query: 125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR 184
           L        I+  L++++    + K RL     +  E+ R + + GV  + +H R V   
Sbjct: 108 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS 167

Query: 185 PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
               A+W  ++ +     IP   +GD+F  +D +R    +G   ++ ARGA+    IF 
Sbjct: 168 FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFK 224

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 78  VVFQMGTSDAVRALTAAKMVCK---DVAAIDINMGCPKSFSV-SGGMGAALLSKPELIHD 133
           +  Q+  SD      AA++      D   I++N+GCP S     GG GA LL     + +
Sbjct: 60  IALQLAGSDPKSLAEAARIGEAFGYD--EINLNLGCP-SEKAQEGGYGACLLLDLARVRE 116

Query: 134 ILTMLKRNLDVPVTCKIRL----LKSSQDTVELARRIEKTGVSALAVHGRKV 181
           IL  +   + VPVT K+RL     ++ +   +    + + GV    VH R  
Sbjct: 117 ILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSA 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 41/334 (12%), Positives = 91/334 (27%), Gaps = 96/334 (28%)

Query: 6   KLVLAPMV-----RVGTLPFRLLAAQYGADITYGEEIIDHKLLK-----CERRVNEYIGS 55
           K  +A  V         + F++    +   +          +L+       +    +   
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF---W---LNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 56  TDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDI----NMGCP 111
           +D         +    H  +  +   + +      L    +V  +V         N+ C 
Sbjct: 217 SDHSSN-----IKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCK 267

Query: 112 -----KSFSVSGGMGAALLSKPELIH--------DILTMLKRNLDVPVTCKIRLLKSSQD 158
                +   V+  + AA  +   L H        ++ ++L + LD               
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----------- 316

Query: 159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQ 218
             +L R +  T    L++    + D     A W                  D +++ +  
Sbjct: 317 --DLPREVLTTNPRRLSIIAESIRD---GLATW------------------DNWKHVNCD 353

Query: 219 RIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKSIFWENNVKSTKHTLKEM 278
           ++ T                  I SS   L   + ++ + R S+F   +       L  +
Sbjct: 354 KLTTI-----------------IESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILL-SL 394

Query: 279 IMHYSSLELPEGKAIIKSETLADIAKLYEEEKYY 312
           I             + K    + + K  +E    
Sbjct: 395 IWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTIS 427

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Length = 311

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 40/175 (22%)

Query: 82  MGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR 140
            G+ +A      AK+    +V AI++N+ CP    V  G G A  + PE+   ++   K 
Sbjct: 106 AGSEEADYVAVCAKIGDAANVKAIELNISCPN---VKHG-GQAFGTDPEVAAALVKACKA 161

Query: 141 NLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA----VHGRKVADRPRDPA---KWG- 192
              VP+  K  L  +  D V +A+ +E  G   L     + G +   + R P      G 
Sbjct: 162 VSKVPLYVK--LSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGG 219

Query: 193 ------------EIADIVAALSIPVIANG------DVFEYDDFQRIKTAAGASSV 229
                        I  +   + IP+I  G      DV E          AGAS+V
Sbjct: 220 LSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEM-------YMAGASAV 267

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 152 LLKSSQDTVELARRIEKTGVSALAV----HGRKVADRPRDPAKWGEIADIVAALSIPVIA 207
            + +   TVE A+   + G   +      +      +      +  + D++ ++   VIA
Sbjct: 121 EIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA 180

Query: 208 NGDVFEYDDFQRIKTAAGASSVM 230
            G+V   D ++R+    G    +
Sbjct: 181 EGNVITPDMYKRVM-DLGVHCSV 202

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 33/158 (20%)

Query: 98  CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ 157
                  ++N+ CP   +V G     L    E    +L  +      P+  K+       
Sbjct: 118 SDFSGITELNLSCP---NVPGEP--QLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLV 172

Query: 158 DTVELARRIEKTGVSAL-----AVHGRKV---ADRPRDPAKWGE---------------I 194
               +A  + +  ++ +       +G  +   A+      K G                +
Sbjct: 173 HFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANV 232

Query: 195 ADIVAAL--SIPVIANGDVFEYDD-FQRIKTAAGASSV 229
                 L   I +I  G +    D F+ +    GA+ +
Sbjct: 233 RAFYTRLKPEIQIIGTGGIETGQDAFEHLL--CGATML 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	100.0
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	100.0
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	100.0
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	100.0
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	100.0
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	100.0
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	100.0
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	100.0
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	100.0
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	100.0
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	100.0
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	100.0
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	100.0
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	100.0
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	99.98
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	99.98
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	99.98
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.98
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	99.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.97
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	99.97
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	99.97
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	99.97
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	99.97
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	99.97
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	99.97
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	99.96
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	99.96
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	99.96
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.95
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	99.94
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.93
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	99.92
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.91
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	99.91
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.91
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	99.9
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.89
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	99.89
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.86
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	99.85
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.84
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	99.82
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	99.82
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	99.81
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	99.79
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	99.79
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	99.76
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	99.73
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.72
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.71
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	99.71
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	99.69
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.68
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.66
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	99.64
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.63
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	99.62
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.61
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	99.6
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	99.59
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.58
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	99.56
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.55
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	99.53
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	99.52
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	99.5
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	99.49
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	99.47
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.39
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.38
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.38
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.37
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	99.35
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	99.34
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	99.34
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.33
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	99.32
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	99.32
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.29
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	99.27
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	99.23
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	99.2
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	99.18
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.17
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	99.16
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	99.15
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.15
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	99.14
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	99.13
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	99.12
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	99.11
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	99.11
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	99.1
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	99.08
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.07
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	99.07
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.05
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	99.05
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.05
2qgy_A	391	Enolase from the environmental genome shotgun sequ	99.02
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	99.02
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	99.02
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.02
2gl5_A	410	Putative dehydratase protein; structural genomics,	99.02
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	99.01
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	99.0
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	98.95
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	98.95
2poz_A	392	Putative dehydratase; octamer, structural genomics	98.95
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	98.93
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	98.92
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	98.92
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	98.92
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	98.91
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	98.91
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	98.89
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	98.89
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.88
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	98.88
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	98.87
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	98.86
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.86
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	98.86
2o56_A	407	Putative mandelate racemase; dehydratase, structur	98.85
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	98.84
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	98.84
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	98.83
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	98.81
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	98.8
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	98.8
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	98.79
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	98.79
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	98.79
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	98.78
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	98.78
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.78
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	98.78
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	98.77
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	98.77
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.77
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	98.75
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.74
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	98.73
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.73
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	98.73
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.71
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	98.71
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	98.68
3oa3_A	288	Aldolase; structural genomics, seattle structural	98.68
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	98.68
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	98.68
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.67
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.67
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	98.67
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.65
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	98.65
1viz_A	240	PCRB protein homolog; structural genomics, unknown	98.64
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	98.64
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	98.62
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	98.62
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.61
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.61
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	98.61
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	98.6
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	98.59
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	98.58
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	98.58
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.56
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.56
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	98.56
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	98.56
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	98.54
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	98.54
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	98.54
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	98.54
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	98.53
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	98.53
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	98.52
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	98.51
3fv9_G	386	Mandelate racemase/muconate lactonizing enzyme; st	98.51
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	98.5
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	98.48
3r0u_A	379	Enzyme of enolase superfamily; structural genomics	98.48
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.47
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	98.46
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	98.44
3tcs_A	388	Racemase, putative; PSI-biology, nysgrc, structura	98.44
3go2_A	409	Putative L-alanine-DL-glutamate epimerase; structu	98.44
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	98.43
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	98.43
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	98.4
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	98.4
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	98.39
4e4f_A	426	Mannonate dehydratase; magnesium binding, enzyme f	98.37
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	98.36
4e8g_A	391	Enolase, mandelate racemase/muconate lactonizing e	98.34
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	98.34
3dgb_A	382	Muconate cycloisomerase; muconate lactonizing enzy	98.34
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	98.33
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	98.31
3fcp_A	381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	98.3
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	98.29
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	98.29
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	98.25
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	98.25
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	98.23
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	98.22
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	98.22
4hnl_A	421	Mandelate racemase/muconate lactonizing enzyme; de	98.2
4a35_A	441	Mitochondrial enolase superfamily member 1; isomer	98.19
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	98.15
3ik4_A	365	Mandelate racemase/muconate lactonizing protein; s	98.13
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	98.13
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	98.12
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	98.12
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	98.12
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	98.11
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.1
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	98.09
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	98.06
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	98.02
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	98.0
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	98.0
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	98.0
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	97.99
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	97.98
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	97.98
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.95
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	97.95
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	97.91
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	97.89
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.87
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	97.86
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	97.84
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	97.82
4dye_A	398	Isomerase; enolase family protein, EFI, enzym func	97.81
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	97.79
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	97.78
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	97.76
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	97.76
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	97.74
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.73
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	97.72
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	97.69
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.68
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.67
2pge_A	377	MENC; OSBS, NYSGXRC, PSI-II, structural genomics,	97.66
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	97.65
1wuf_A	393	Hypothetical protein LIN2664; structural genomics,	97.61
2chr_A	370	Chloromuconate cycloisomerase; 3.00A {Cupriavidus	97.6
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	97.59
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	97.58
4hpn_A	378	Putative uncharacterized protein; enolase, enzyme	97.58
3u9i_A	393	Mandelate racemase/muconate lactonizing enzyme, C	97.55
3s5s_A	389	Mandelate racemase/muconate lactonizing enzyme FA	97.55
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	97.51
4h1z_A	412	Enolase Q92ZS5; dehydratase, magnesium binding sit	97.47
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	97.46
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.46
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	97.42
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	97.41
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	97.39
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	97.38
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	97.38
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	97.37
2ozt_A	332	TLR1174 protein; structural genomics, O-succinylbe	97.35
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	97.33
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	97.32
4h83_A	388	Mandelate racemase/muconate lactonizing enzyme; st	97.31
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	97.29
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	97.27
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	97.23
3qld_A	388	Mandelate racemase/muconate lactonizing protein; s	97.21
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	97.19
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	97.17
1wue_A	386	Mandelate racemase/muconate lactonizing enzyme FA	97.16
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	97.15
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	97.14
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	97.14
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	97.13
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	97.12
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	97.12
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	97.12
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	97.11
3vdg_A	445	Probable glucarate dehydratase; enolase, magnesium	97.11
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	97.09
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	97.08
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	97.07
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	97.06
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	97.06
3va8_A	445	Probable dehydratase; enolase, magnesium binding s	97.05
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	97.04
3cyj_A	372	Mandelate racemase/muconate lactonizing enzyme-LI	97.04
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	97.03
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	97.01
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	97.0
4h2h_A	376	Mandelate racemase/muconate lactonizing enzyme; en	96.99
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	96.99
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	96.98
3vc5_A	441	Mandelate racemase/muconate lactonizing protein; d	96.98
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	96.96
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	96.95
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	96.94
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	96.93
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	96.93
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	96.93
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	96.91
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	96.91
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	96.91
2opj_A	327	O-succinylbenzoate-COA synthase; TIM barrel, struc	96.9
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	96.9
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	96.88
3ijl_A	338	Muconate cycloisomerase; enolase superfamily, dipe	96.86
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	96.86
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	96.85
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	96.85
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	96.85
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	96.84
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	96.83
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	96.82
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	96.82
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.81
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	96.81
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	96.78
3mzn_A	450	Glucarate dehydratase; lyase, structural genomics,	96.78
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.77
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	96.72
3p0w_A	470	Mandelate racemase/muconate lactonizing protein; s	96.72
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	96.68
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	96.66
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	96.65
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	96.65
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	96.64
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	96.63
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.6
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	96.6
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	96.59
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	96.58
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	96.57
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	96.55
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	96.54
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	96.54
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	96.51
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	96.51
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	96.51
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	96.49
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	96.49
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	96.49
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	96.49
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	96.47
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	96.45
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	96.45
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	96.44
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	96.42
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	96.42
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.4
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	96.4
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.35
3pfr_A	455	Mandelate racemase/muconate lactonizing protein; e	96.34
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	96.33
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	96.33
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	96.32
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	96.28
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	96.27
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	96.25
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	96.25
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	96.24
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	96.24
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	96.21
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	96.18
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	96.18
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	96.17
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	96.16
3v5c_A	392	Mandelate racemase/muconate lactonizing protein; e	96.15
4g8t_A	464	Glucarate dehydratase; enolase, enzyme function IN	96.14
3ekg_A	404	Mandelate racemase/muconate lactonizing enzyme; st	96.14
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	96.13
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	96.12
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	96.05
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	96.05
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	96.04
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.04
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	96.03
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	96.02
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	95.97
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	95.92
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	95.91
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	95.9
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	95.87
2okt_A	342	OSB synthetase, O-succinylbenzoic acid synthetase;	95.86
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	95.86
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	95.85
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	95.83
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.77
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.75
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	95.75
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	95.74
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	95.71
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	95.68
2p3z_A	415	L-rhamnonate dehydratase; enolase, structural geno	95.68
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	95.66
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	95.58
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	95.58
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.48
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	95.45
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.39
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	95.39
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	95.39
3tqp_A	428	Enolase; energy metabolism, lyase; 2.20A {Coxiella	95.38
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	95.37
3fxg_A	455	Rhamnonate dehydratase; structural gemomics, enola	95.35
3tml_A	288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	95.28
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	95.27
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	95.25
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.22
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	95.2
2fym_A	431	Enolase; RNA degradosome, enolase, lyase; 1.60A {E	95.2
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	95.2
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	95.17
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	95.16
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	95.16
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	95.15
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	95.12
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	95.12
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	95.1
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	95.1
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	95.07
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	95.06
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	95.01
1kko_A	413	3-methylaspartate ammonia-lyase; enolase superfami	95.0
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	95.0
1jpd_X	324	L-Ala-D/L-Glu epimerase; enolase superfamily, muco	94.97
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	94.92
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	94.86
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	94.86
3lg3_A	435	Isocitrate lyase; conserved, CD, proteomics eviden	94.85
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	94.81
1w6t_A	444	Enolase; bacterial infection, surface protein, moo	94.79
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	94.79
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	94.74
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	94.73
1kcz_A	413	Beta-methylaspartase; beta zigzag, alpha/beta-barr	94.71
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	94.7
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	94.67
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	94.62
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	94.6
2nwr_A	267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	94.58
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	94.58
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	94.54
3i4e_A	439	Isocitrate lyase; structural genomics, seattle str	94.54
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	94.52
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	94.51
1f8m_A	429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	94.51
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	94.5
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	94.4
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	94.34
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	94.34
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	94.32
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	94.32
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	94.31
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	94.23
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	94.21
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	94.2
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	94.16
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	94.13
3eol_A	433	Isocitrate lyase; seattle structural center for in	94.09
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	94.04
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	94.02
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	94.0
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	94.0
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	93.99
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	93.99
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	93.97
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	93.93
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	93.91
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	93.88
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	93.84
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	93.8
3k13_A	300	5-methyltetrahydrofolate-homocysteine methyltrans;	93.76
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	93.73
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	93.7
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	93.66
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	93.66
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	93.66
2pcq_A	283	Putative dihydrodipicolinate synthase; lyase, lysi	93.64
1r6w_A	322	OSB synthase, O-succinylbenzoate synthase, OSBS; e	93.56
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	93.52
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	93.49
2pa6_A	427	Enolase; glycolysis, lyase, magnesium, metal-bindi	93.48
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	93.45
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	93.41
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	93.38
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	93.29
2fiq_A	420	Putative tagatose 6-phosphate kinase 1; structural	93.23
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	93.22
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	93.21
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	93.2
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	93.2
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	93.06

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=100.00  E-value=4.8e-53  Score=395.50  Aligned_cols=285  Identities=24%  Similarity=0.371  Sum_probs=236.8

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      |+++||+++|||+++|+.+||.+++++|+|+++|||++++.+....+..      +        +. +  .++.+.|+++
T Consensus         1 ~~l~nri~~APM~~~t~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~------~--------~~-l--~~~~~~~~~~   63 (318)
T 1vhn_A            1 MSLEVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKT------E--------EL-L--PQPHERNVAV   63 (318)
T ss_dssp             ----CEEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHH------H--------HH-S--CCTTCTTEEE
T ss_pred             CccCCCEEECCCCCCCcHHHHHHHHHHCcCEEEeCCEEEcccccCCHhH------H--------Hh-h--hCcCCCeEEE
Confidence            5789999999999999999999999999999999999988765432211      1        11 2  3556679999


Q ss_pred             EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHH
Q 020428           81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~  160 (326)
                      ||+|++|+++.++|+++.+.+|+||||+|||.++++++++|++++++|+++.++++++++.+++||++|+|.|++..+..
T Consensus        64 QL~g~~~~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~  143 (318)
T 1vhn_A           64 QIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVE  143 (318)
T ss_dssp             EEECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHH
T ss_pred             EeCCCCHHHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHH
Confidence            99999999999999999766999999999999999999999999999999999999999999999999999998877777


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++++.++++|+|+|+||+|+..+.++++++|+.++++++  ++|||+||||+|++|+.++++.+|||+||+||+++.|||
T Consensus       144 ~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~  221 (318)
T 1vhn_A          144 EIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW  221 (318)
T ss_dssp             HHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTT
T ss_pred             HHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence            999999999999999999999888888899999998888  999999999999999999997689999999999999999


Q ss_pred             ccccc------CC---CCHH---HHHHHHHHHHHhhccCcchHHHHHHHHHHHhhc--CCCch----hHHHhccCCHHHH
Q 020428          241 IFSSQ------GK---LHWE---DVKREYVRKSIFWENNVKSTKHTLKEMIMHYSS--LELPE----GKAIIKSETLADI  302 (326)
Q Consensus       241 lf~~~------~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~  302 (326)
                      +|.+.      +.   ..+.   +++++|++...++.++    ...+..|++++.+  .++|+    ++++++++|.+++
T Consensus       222 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  297 (318)
T 1vhn_A          222 IFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGE----RKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQIL  297 (318)
T ss_dssp             HHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTHHHHTTTCTTHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHhcCCChHHHHHHHHcCCCHHHH
Confidence            99873      32   2233   3556677776665443    2233344333332  25676    3689999999999


Q ss_pred             HHHHHh
Q 020428          303 AKLYEE  308 (326)
Q Consensus       303 ~~~~~~  308 (326)
                      .+++++
T Consensus       298 ~~~~~~  303 (318)
T 1vhn_A          298 KEMFYN  303 (318)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=100.00  E-value=1.8e-51  Score=389.20  Aligned_cols=280  Identities=21%  Similarity=0.349  Sum_probs=230.8

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++||+++|||+|+||.+||.+++++|+ |+++|||++++.+.+..+                 +.+.+ .+.++.|+++
T Consensus         1 ~l~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~-----------------~~~~~-~~~~~~p~~v   62 (350)
T 3b0p_A            1 MLDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNR-----------------ERLLA-FRPEEHPIAL   62 (350)
T ss_dssp             -CCCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCH-----------------HHHHC-CCGGGCSEEE
T ss_pred             CCCCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCH-----------------HHHhc-cCCCCCeEEE
Confidence            4799999999999999999999999986 999999999887654221                 00122 2445569999


Q ss_pred             EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh---
Q 020428           81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS---  156 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~---  156 (326)
                      ||+|++|+++.++|+++.+ |+|+||||+|||.+++++++||++++++++++.++++++++++++||++|+|+|++.   
T Consensus        63 QL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~  142 (350)
T 3b0p_A           63 QLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKET  142 (350)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCC
T ss_pred             EeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCcccc
Confidence            9999999999999999987 899999999999999999999999999999999999999999999999999998653   


Q ss_pred             -HHHHHHHHHHHHcCCcEEEEeecccCCCCCC-------cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          157 -QDTVELARRIEKTGVSALAVHGRKVADRPRD-------PAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       157 -~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-------~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                       +++.++++.++++|+|+|+||+|+..+.+++       +.+|+.++++++.+ ++|||+||||+|++|+.++++  |||
T Consensus       143 ~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~--GaD  220 (350)
T 3b0p_A          143 YRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK--RVD  220 (350)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT--TSS
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--CCC
Confidence             4789999999999999999999987654443       46899999999998 999999999999999999994  899


Q ss_pred             EEEeccchhcCccccccc-----C---CCCHHHHHH---HHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCchh----
Q 020428          228 SVMAARGALWNASIFSSQ-----G---KLHWEDVKR---EYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPEG----  290 (326)
Q Consensus       228 ~VmiGr~~l~~P~lf~~~-----~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----  290 (326)
                      +||+||+++.|||+|.+.     +   ..++.+.+.   +|++.+.+++.       .++.+++|+.+|  ++|+.    
T Consensus       221 ~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~~~~kh~~~~~~g~~~~~~~r  293 (350)
T 3b0p_A          221 GVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGT-------PPWAVLRHMLNLFRGRPKGRLWR  293 (350)
T ss_dssp             EEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHHHTC-------CHHHHHTTSTTTTTTSTTHHHHH
T ss_pred             EEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCc-------cHHHHHHHHHHHHccCCCHHHHH
Confidence            999999999999999973     2   234555544   44444444322       244555555554  56763    


Q ss_pred             HHHhccCCHHHHHHHHHh
Q 020428          291 KAIIKSETLADIAKLYEE  308 (326)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~  308 (326)
                      +.|++++|++++.+++++
T Consensus       294 ~~l~~~~~~~~~~~~l~~  311 (350)
T 3b0p_A          294 RLLSEGRSLQALDRALRL  311 (350)
T ss_dssp             HHHHHHCSHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHH
Confidence            578999999999999876

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=100.00  E-value=3.1e-37  Score=290.57  Aligned_cols=240  Identities=13%  Similarity=0.127  Sum_probs=190.0

Q ss_pred             CCCCCceEEccccCCCC---------HH---HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceee
Q 020428            1 MDYQNKLVLAPMVRVGT---------LP---FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVF   68 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~---------~~---fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (326)
                      ++++||+++|||++++.         ..   |++.+ +.|+|+++||+++++......+   ...+.++-......+.+.
T Consensus        14 ~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA-~gG~gliite~~~v~~~g~~~~---~~~~i~~d~~~~~~~~~~   89 (338)
T 1z41_A           14 MTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRA-IGQVGLIIVEASAVNPQGRITD---QDLGIWSDEHIEGFAKLT   89 (338)
T ss_dssp             EEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHH-HTTCSEEEEEEEESSGGGCSST---TSCBCSSTHHHHHHHHHH
T ss_pred             EEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHH-cCCCCEEEeCCeeccccccCCC---CCcccCCHHHHHHHHHHH
Confidence            46899999999998753         22   33333 2389999999998764322111   111211100000112234


Q ss_pred             ecccCCCCcEEEEECCC-----------------------CH------------HHHHHHHHHhhc-CCCEEEEccCC--
Q 020428           69 RTCHQERNHVVFQMGTS-----------------------DA------------VRALTAAKMVCK-DVAAIDINMGC--  110 (326)
Q Consensus        69 ~~~~~~~~p~~vQl~g~-----------------------~~------------~~~~~aa~~~~~-~~d~idlN~gc--  110 (326)
                      +.+|+.+.++++||++.                       .|            ++|+++|+++.+ |||+||||++|  
T Consensus        90 ~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~gy  169 (338)
T 1z41_A           90 EQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGY  169 (338)
T ss_dssp             HHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTS
T ss_pred             HHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence            55677788999999853                       22            689999999887 99999999997  


Q ss_pred             -------CccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC------CCChHHHHHHHHHHHHcCCcEEEEe
Q 020428          111 -------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL------LKSSQDTVELARRIEKTGVSALAVH  177 (326)
Q Consensus       111 -------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~i~vh  177 (326)
                             |..+.+.++||++++++++++.+++++++++++.||++|++.      |++.+++.++++.++++|+|+|++|
T Consensus       170 Ll~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~  249 (338)
T 1z41_A          170 LIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCS  249 (338)
T ss_dssp             HHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence                   999999999999999999999999999999999999999998      5778899999999999999999999


Q ss_pred             ecccCCC--CCCc-CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          178 GRKVADR--PRDP-AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       178 ~r~~~~~--~~~~-~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +++....  ..++ .+++.++++++.+++|||++|||+|+++++++++..+||+|++||+++.||+|+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~k  319 (338)
T 1z41_A          250 SGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFART  319 (338)
T ss_dssp             CCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHH
T ss_pred             cCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHH
Confidence            9865321  2233 47899999999999999999999999999999964459999999999999999886

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=100.00  E-value=3e-37  Score=294.01  Aligned_cols=239  Identities=12%  Similarity=0.102  Sum_probs=191.4

Q ss_pred             CCCCCceEEccccCC-------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccC
Q 020428            1 MDYQNKLVLAPMVRV-------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ   73 (326)
Q Consensus         1 l~l~~~iilAPM~g~-------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (326)
                      ++++||+++|||++.       |+..++.+++++|+|+++||+++++......+   ...+.++-......+.+.+..|+
T Consensus        20 ~~l~NRiv~aPm~~~~a~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~---~~~gi~~d~~i~~~k~l~~avh~   96 (377)
T 2r14_A           20 LSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYV---YTPGIWTDAQEAGWKGVVEAVHA   96 (377)
T ss_dssp             EEESCSEEECCCCCCCCTTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBT---TCCBSSSHHHHHHHHHHHHHHHH
T ss_pred             EEecCCeEECCCcCCcCCCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCC---CCcccCCHHHHHHHHHHHHHHhh
Confidence            468999999999987       88999999999999999999998864322111   11222110000011223455677


Q ss_pred             CCCcEEEEECCC-------------------------------------------CH------------HHHHHHHHHhh
Q 020428           74 ERNHVVFQMGTS-------------------------------------------DA------------VRALTAAKMVC   98 (326)
Q Consensus        74 ~~~p~~vQl~g~-------------------------------------------~~------------~~~~~aa~~~~   98 (326)
                      .+.++++||++.                                           .|            ++|+++|+++.
T Consensus        97 ~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~  176 (377)
T 2r14_A           97 KGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAK  176 (377)
T ss_dssp             TTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence            788999999751                                           23            78999999987


Q ss_pred             c-CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCC---------CChHH
Q 020428           99 K-DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLL---------KSSQD  158 (326)
Q Consensus        99 ~-~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g---------~~~~~  158 (326)
                      + |||+||||++|         |..|.+.++||++++++++++.+++++|+++++. ||++|++..         ++.++
T Consensus       177 ~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~  256 (377)
T 2r14_A          177 RAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAM  256 (377)
T ss_dssp             HHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHH
T ss_pred             HcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHH
Confidence            7 99999999997         9999999999999999999999999999999853 999999873         23567


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.++++.++++|+|+|++|+++..+.+.+ .+++.++++++.+++|||+|||| ++++++++++..+||+||+||+++.|
T Consensus       257 ~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~  334 (377)
T 2r14_A          257 AFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIAN  334 (377)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHhC
Confidence            89999999999999999999865443322 26888999999999999999999 69999999976669999999999999


Q ss_pred             cccccc
Q 020428          239 ASIFSS  244 (326)
Q Consensus       239 P~lf~~  244 (326)
                      |+|+.+
T Consensus       335 P~l~~k  340 (377)
T 2r14_A          335 PDLPER  340 (377)
T ss_dssp             TTHHHH
T ss_pred             chHHHH
Confidence            999987

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=100.00  E-value=4e-36  Score=285.24  Aligned_cols=238  Identities=12%  Similarity=0.131  Sum_probs=191.3

Q ss_pred             CCCCCceEEccccCC---------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecc
Q 020428            1 MDYQNKLVLAPMVRV---------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~---------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (326)
                      ++++||+++|||++.         |+..++.+++++|+|+++||+++++......+   ...+.++-......+.+.+.+
T Consensus        14 ~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~---~~~gi~~d~~i~~~~~l~~~v   90 (364)
T 1vyr_A           14 VTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYA---GAPGLHSPEQIAAWKKITAGV   90 (364)
T ss_dssp             EEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCST---TCCBSSSHHHHHHHHHHHHHH
T ss_pred             EEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCC---CCcccCCHHHHHHHHHHHHHH
Confidence            468999999999975         57789999999999999999998764322111   111211100000112234556


Q ss_pred             cCCCCcEEEEECC------------------------------------------CCH------------HHHHHHHHHh
Q 020428           72 HQERNHVVFQMGT------------------------------------------SDA------------VRALTAAKMV   97 (326)
Q Consensus        72 ~~~~~p~~vQl~g------------------------------------------~~~------------~~~~~aa~~~   97 (326)
                      |+.+.++++||++                                          ..|            ++|+++|+++
T Consensus        91 h~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a  170 (364)
T 1vyr_A           91 HAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANA  170 (364)
T ss_dssp             HHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHH
T ss_pred             HhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            7778899999973                                          123            6899999998


Q ss_pred             hc-CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCC--C--------Ch
Q 020428           98 CK-DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLL--K--------SS  156 (326)
Q Consensus        98 ~~-~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g--~--------~~  156 (326)
                      .+ |||+||||++|         |..|.+.++||++++++++++.++++++|++++ .||++|++.+  +        +.
T Consensus       171 ~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~  250 (364)
T 1vyr_A          171 REAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEE  250 (364)
T ss_dssp             HHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHH
T ss_pred             HHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCH
Confidence            77 99999999997         888999999999999999999999999999983 3999999985  2        23


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +++.++++.++++|+|+|++|+++..+.+  +..++.++++++.+++|||++||| |+++++++++..+||+||+||+++
T Consensus       251 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l  327 (364)
T 1vyr_A          251 ADALYLIEELAKRGIAYLHMSETDLAGGK--PYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYI  327 (364)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCBTTBCC--CCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCcccCCC--cccHHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHH
Confidence            46888999999999999999998654322  236889999999999999999999 999999999765699999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||+|+.+
T Consensus       328 ~~P~~~~~  335 (364)
T 1vyr_A          328 ANPDLVAR  335 (364)
T ss_dssp             HCTTHHHH
T ss_pred             hChhHHHH
Confidence            99999987

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=100.00  E-value=5.8e-36  Score=284.22  Aligned_cols=238  Identities=13%  Similarity=0.076  Sum_probs=190.3

Q ss_pred             CCCCCceEEccccCCC---------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecc
Q 020428            1 MDYQNKLVLAPMVRVG---------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t---------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (326)
                      ++++||+++|||++++         +..++.+++++|+|+++||+++++......+   ...+.++-......+.+.+.+
T Consensus        14 ~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~---~~~gi~~d~~i~~~~~l~~~v   90 (365)
T 2gou_A           14 LTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYA---WTPGIYTPEQIAGWRIVTEAV   90 (365)
T ss_dssp             EEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCST---TCCBSSSHHHHHHHHHHHHHH
T ss_pred             EEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCC---CCCccCCHHHHHHHHHHHHHH
Confidence            4689999999999874         5789999999999999999998764322111   111211100000112234556


Q ss_pred             cCCCCcEEEEECC------------------------------------------CCH------------HHHHHHHHHh
Q 020428           72 HQERNHVVFQMGT------------------------------------------SDA------------VRALTAAKMV   97 (326)
Q Consensus        72 ~~~~~p~~vQl~g------------------------------------------~~~------------~~~~~aa~~~   97 (326)
                      |+.+.++++||++                                          ..|            ++|+++|+++
T Consensus        91 h~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a  170 (365)
T 2gou_A           91 HAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALNA  170 (365)
T ss_dssp             HHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            7777899999974                                          123            7899999998


Q ss_pred             hc-CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecC-CC--------ChH
Q 020428           98 CK-DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRL-LK--------SSQ  157 (326)
Q Consensus        98 ~~-~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~-g~--------~~~  157 (326)
                      .+ |||+||||++|         |..+.+.++||++++++++++.+++++++++++. ||++|++. ++        +.+
T Consensus       171 ~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~  250 (365)
T 2gou_A          171 MEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPIL  250 (365)
T ss_dssp             HHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHH
T ss_pred             HHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHH
Confidence            77 99999999998         8889999999999999999999999999999843 99999998 32        346


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++++.++++|+|+|++|+++....  ....++.++++++.+++|||++||| |+++++++++..+||+||+||+++.
T Consensus       251 ~~~~~a~~l~~~G~d~i~v~~~~~~~~--~~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~  327 (365)
T 2gou_A          251 TYTAAAALLNKHRIVYLHIAEVDWDDA--PDTPVSFKRALREAYQGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIA  327 (365)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCBTTBC--CCCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcCCC--CCccHHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence            789999999999999999999864321  1235788999999999999999999 9999999996555999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      ||+|+.+
T Consensus       328 ~P~l~~~  334 (365)
T 2gou_A          328 NPDLPER  334 (365)
T ss_dssp             CTTHHHH
T ss_pred             CchHHHH
Confidence            9999987

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=100.00  E-value=1e-35  Score=283.54  Aligned_cols=240  Identities=13%  Similarity=0.092  Sum_probs=183.8

Q ss_pred             CCCCCceEEccccCCC-------CHHHHHHHHHc-CCCeEEeCceecccccccccccccccCcccccccCCcceeeeccc
Q 020428            1 MDYQNKLVLAPMVRVG-------TLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t-------~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (326)
                      ++++||+++|||++++       +........+. |+|+++||+++++......+   ...+.++-......+.+.+..|
T Consensus        25 ~~l~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~g~GLiite~~~v~~~g~~~~---~~~gi~~d~~i~~~k~l~~avh  101 (376)
T 1icp_A           25 FELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYK---DVPGIWTKEQVEAWKPIVDAVH  101 (376)
T ss_dssp             EEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCST---TCCBCSSHHHHHHHHHHHHHHH
T ss_pred             EEECCccEECCcCcCcCCCCCCCHHHHHHHHHhcCCeeEEEECceeeccccccCc---ccCccCCHHHHHHHHHHHHHHH
Confidence            4689999999999875       23322233333 89999999998875322111   1122211000001122345567


Q ss_pred             CCCCcEEEEECC--------------------------------------CCH------------HHHHHHHHHhhc-CC
Q 020428           73 QERNHVVFQMGT--------------------------------------SDA------------VRALTAAKMVCK-DV  101 (326)
Q Consensus        73 ~~~~p~~vQl~g--------------------------------------~~~------------~~~~~aa~~~~~-~~  101 (326)
                      +.+.++++||++                                      ..|            ++|+++|+++.+ ||
T Consensus       102 ~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~a~~aGf  181 (376)
T 1icp_A          102 AKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGF  181 (376)
T ss_dssp             HTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            778899999975                                      122            689999999887 99


Q ss_pred             CEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCC-C--------ChHHHHHH
Q 020428          102 AAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLL-K--------SSQDTVEL  162 (326)
Q Consensus       102 d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g-~--------~~~~~~e~  162 (326)
                      |+||||++|         |..|.+.++||++++++++++.+++++||++++. ||++|++.. +        +.+++.++
T Consensus       182 DgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~l  261 (376)
T 1icp_A          182 DGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYM  261 (376)
T ss_dssp             SEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHH
T ss_pred             CEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHH
Confidence            999999997         9999999999999999999999999999999843 999999963 1        23568999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccc
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF  242 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf  242 (326)
                      ++.++++|+|+|++|+++..+.+.+..+++.++++++.+++|||++||| |+++++++++..+||+||+||+++.||||+
T Consensus       262 a~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~  340 (376)
T 1icp_A          262 VESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLP  340 (376)
T ss_dssp             HHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred             HHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHhCccHH
Confidence            9999999999999999875433222245677889999999999999999 999999999766699999999999999999


Q ss_pred             cc
Q 020428          243 SS  244 (326)
Q Consensus       243 ~~  244 (326)
                      .+
T Consensus       341 ~k  342 (376)
T 1icp_A          341 KR  342 (376)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=100.00  E-value=8.4e-35  Score=273.78  Aligned_cols=241  Identities=16%  Similarity=0.113  Sum_probs=188.3

Q ss_pred             CCCCCceEEccccCCC---------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVRVG---------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~t---------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (326)
                      ++++||+++|||....         +........+.  |+|+++||.+.++.-....+   ..++.++-......+.+.+
T Consensus        14 ~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~---~~~~i~~d~~i~~~~~~~~   90 (340)
T 3gr7_A           14 LTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISE---RDLGIWSDDHIAGLRELVG   90 (340)
T ss_dssp             EEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSST---TSEECSSTTHHHHHHHHHH
T ss_pred             EEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCC---CCcccCCHHHHHHHHHHHH
Confidence            4689999999998632         22333333333  78999999887765332111   1222221100011222466


Q ss_pred             cccCCCCcEEEEECCCC-----------------------------------HHHHHHHHHHhhc-CCCEEEEccCC---
Q 020428           70 TCHQERNHVVFQMGTSD-----------------------------------AVRALTAAKMVCK-DVAAIDINMGC---  110 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~~-----------------------------------~~~~~~aa~~~~~-~~d~idlN~gc---  110 (326)
                      .+|+.+.++++||++..                                   .++|++||+++.+ |||+||||++|   
T Consensus        91 ~vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyL  170 (340)
T 3gr7_A           91 LVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYL  170 (340)
T ss_dssp             HHHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCH
T ss_pred             HHHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchH
Confidence            77888889999995310                                   3689999999987 99999999995   


Q ss_pred             ------CccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC------CChHHHHHHHHHHHHcCCcEEEEee
Q 020428          111 ------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL------KSSQDTVELARRIEKTGVSALAVHG  178 (326)
Q Consensus       111 ------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g------~~~~~~~e~a~~l~~~G~d~i~vh~  178 (326)
                            |..|.+.++||++++++++++.+++++|+++++.||+||++..      ++.+++.++++.++++|+|+|+||.
T Consensus       171 l~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~  250 (340)
T 3gr7_A          171 INEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSS  250 (340)
T ss_dssp             HHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred             HHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence                  9999999999999999999999999999999999999999973      5678999999999999999999994


Q ss_pred             -cccCCC-C-CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          179 -RKVADR-P-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       179 -r~~~~~-~-~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                       ++..+. + ....++++++++++.+++|||++|||+|+++++++++..+||+|++||+++.||+|+.+
T Consensus       251 g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~k  319 (340)
T 3gr7_A          251 GAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYA  319 (340)
T ss_dssp             CCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHH
T ss_pred             CCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHH
Confidence             433321 1 22347899999999999999999999999999999964449999999999999999886

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=100.00  E-value=2.2e-35  Score=283.22  Aligned_cols=238  Identities=13%  Similarity=0.096  Sum_probs=185.8

Q ss_pred             CCCCCceEEccccCCC---CHH-------HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRVG---TLP-------FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t---~~~-------fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (326)
                      ++++||+++|||.+++   +.+       |++.++  |+|+++||+++++......+   ...+.++-......+.+.+.
T Consensus        27 ~~L~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~--G~GLIitE~~~v~~~g~~~~---~~~gi~~d~~i~~~k~l~~a  101 (402)
T 2hsa_B           27 FNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRAT--AGGFLITEGTMISPTSAGFP---HVPGIFTKEQVREWKKIVDV  101 (402)
T ss_dssp             EEESCSEEECCCCCCCSGGGCCCHHHHHHHHHHCC--TTCEEECCCEESSTTCCCST---TCCBCSSHHHHHHHHHHHHH
T ss_pred             EEecCCeEECCCCCCcCCCCCCCHHHHHHHHHHhc--cCCEEEecceeeccccccCC---CCcccCCHHHHHHHHHHHHH
Confidence            4689999999999875   223       333332  69999999998864322111   11222110000011223455


Q ss_pred             ccCCCCcEEEEECC----------------------------------------CCH------------HHHHHHHHHhh
Q 020428           71 CHQERNHVVFQMGT----------------------------------------SDA------------VRALTAAKMVC   98 (326)
Q Consensus        71 ~~~~~~p~~vQl~g----------------------------------------~~~------------~~~~~aa~~~~   98 (326)
                      +|+.+.++++||++                                        ..|            ++|++||+++.
T Consensus       102 vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~  181 (402)
T 2hsa_B          102 VHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAI  181 (402)
T ss_dssp             HHHTTCEEEEEEECCTTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCeEEEEeccCCcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence            67788899999973                                        123            78999999988


Q ss_pred             c-CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCC-C--------ChHH
Q 020428           99 K-DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLL-K--------SSQD  158 (326)
Q Consensus        99 ~-~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g-~--------~~~~  158 (326)
                      + |||+||||++|         |..|.+.++||++++++++++.+++++|+++++ .||++|++.+ +        +.++
T Consensus       182 ~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~  261 (402)
T 2hsa_B          182 EAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSL  261 (402)
T ss_dssp             HTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHH
T ss_pred             HcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHH
Confidence            7 99999999997         999999999999999999999999999999984 4999999974 1        2367


Q ss_pred             HHHHHHHHHHcC------CcEEEEeecccCCCCCCc--------CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          159 TVELARRIEKTG------VSALAVHGRKVADRPRDP--------AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       159 ~~e~a~~l~~~G------~d~i~vh~r~~~~~~~~~--------~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      +.++++.++++|      +|+|++|+++..+.+..+        .+++.++++++.+++|||+|||| |+++++++++..
T Consensus       262 ~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~~~~a~~~l~~g  340 (402)
T 2hsa_B          262 GLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-TRELGIEAVAQG  340 (402)
T ss_dssp             HHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-CHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHCC
Confidence            899999999999      999999998765422222        25788899999999999999999 999999999766


Q ss_pred             CCcEEEeccchhcCcccccc
Q 020428          225 GASSVMAARGALWNASIFSS  244 (326)
Q Consensus       225 Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +||+||+||+++.||+|+.+
T Consensus       341 ~aD~V~igR~~l~dP~l~~k  360 (402)
T 2hsa_B          341 DADLVSYGRLFISNPDLVMR  360 (402)
T ss_dssp             SCSEEEESHHHHHCTTHHHH
T ss_pred             CCceeeecHHHHhCchHHHH
Confidence            69999999999999999987

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=100.00  E-value=5e-34  Score=268.25  Aligned_cols=242  Identities=14%  Similarity=0.115  Sum_probs=189.0

Q ss_pred             CCCCCceEEccccCCC--------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRVG--------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t--------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (326)
                      ++++||+++|||....        +........+.  |+|+++||.+.++.-....+   ..++.++-......+.+.+.
T Consensus        13 ~~l~NRiv~apm~~~~~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~---~~~gi~~d~~i~~~~~~~~~   89 (343)
T 3kru_A           13 ITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITD---HDLGIWNDEQVKELKKIVDI   89 (343)
T ss_dssp             EEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSST---TSCBCSSHHHHHHHHHHHHH
T ss_pred             eeeeeeecccchhheecccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCcccc---ccccccCHHHHHHHHHHHHH
Confidence            4689999999998632        23333333333  78999999887765432111   22222221000112224667


Q ss_pred             ccCCCCcEEEEECCC------------------------C------------HHHHHHHHHHhhc-CCCEEEEc------
Q 020428           71 CHQERNHVVFQMGTS------------------------D------------AVRALTAAKMVCK-DVAAIDIN------  107 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~------------------------~------------~~~~~~aa~~~~~-~~d~idlN------  107 (326)
                      +|+.+.++++||+..                        .            .++|++||+++.+ |||+||||      
T Consensus        90 vh~~G~~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYL  169 (343)
T 3kru_A           90 CKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYL  169 (343)
T ss_dssp             HHHTTCEEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSH
T ss_pred             HhcCCceEeeehhhccCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceEEEecccchh
Confidence            788888999999531                        0            3689999999987 99999999      


Q ss_pred             ---cCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHHHHHHHHHHcCCcEEEE
Q 020428          108 ---MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTVELARRIEKTGVSALAV  176 (326)
Q Consensus       108 ---~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~i~v  176 (326)
                         +.||..|.++++||++++++++++.+++++|++++  +.||++|++.      |++.+++.++++.|+++ +|+|++
T Consensus       170 l~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~v  248 (343)
T 3kru_A          170 IHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDV  248 (343)
T ss_dssp             HHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEE
T ss_pred             HHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEec
Confidence               67999999999999999999999999999999999  6899999997      35678999999999999 999999


Q ss_pred             -eecccCCCC--CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428          177 -HGRKVADRP--RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQG  246 (326)
Q Consensus       177 -h~r~~~~~~--~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~  246 (326)
                       +|++..+..  ....+++.++++++.+++|||++|||+|+++++++++..+||+|++||+++.||+|+.+..
T Consensus       249 s~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~  321 (343)
T 3kru_A          249 SSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTY  321 (343)
T ss_dssp             ECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred             cCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence             577654321  1234789999999999999999999999999999996555999999999999999998753

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=100.00  E-value=3.1e-33  Score=264.30  Aligned_cols=241  Identities=15%  Similarity=0.153  Sum_probs=188.4

Q ss_pred             CCCCCceEEccccCCC--------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRVG--------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t--------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (326)
                      ++++||+++|||..+.        +........+.  |+|+++||.+.++.-....+   ...+.++-......+.+.+.
T Consensus        13 ~~l~NRiv~apm~~~~~~~~g~~~~~~~~~y~~rA~gg~Glii~e~~~v~~~g~~~~---~~~~i~~d~~i~~~~~~~~~   89 (349)
T 3hgj_A           13 LRLKNRLAMSPMCQYSATLEGEVTDWHLLHYPTRALGGVGLILVEATAVEPLGRISP---YDLGIWSEDHLPGLKELARR   89 (349)
T ss_dssp             EEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSST---TSCBCSSGGGHHHHHHHHHH
T ss_pred             EEecCceEECCcCcCCcCCCCCCCHHHHHHHHHHhcCCceEEEecceeecccccCCC---CcCccCcHHHHHHHHHHHHH
Confidence            4689999999998642        23333333333  78999999888765432111   12222221000112224566


Q ss_pred             ccCCCCcEEEEECC-----C----------------------------C------------HHHHHHHHHHhhc-CCCEE
Q 020428           71 CHQERNHVVFQMGT-----S----------------------------D------------AVRALTAAKMVCK-DVAAI  104 (326)
Q Consensus        71 ~~~~~~p~~vQl~g-----~----------------------------~------------~~~~~~aa~~~~~-~~d~i  104 (326)
                      +|+.+.++++||++     .                            .            .++|+++|+++.+ |||+|
T Consensus        90 vh~~G~~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgV  169 (349)
T 3hgj_A           90 IREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRALRAGFQVI  169 (349)
T ss_dssp             HHHTTCEEEEEEECCGGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHhCCCeEEEEeccCCccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence            78888889999952     0                            0            3689999999987 99999


Q ss_pred             EEccCC---------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHHHHHHHHH
Q 020428          105 DINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTVELARRIE  167 (326)
Q Consensus       105 dlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~e~a~~l~  167 (326)
                      |||++|         |..|.+.++||++++++++++.+++++|++++  +.||.+|++.      |++.+++.++++.++
T Consensus       170 Eih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~  249 (349)
T 3hgj_A          170 ELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLK  249 (349)
T ss_dssp             EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHH
T ss_pred             EECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHH
Confidence            999999         99999999999999999999999999999999  7899999997      577889999999999


Q ss_pred             HcCCcEEEEe-ecccCCC--CC-CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          168 KTGVSALAVH-GRKVADR--PR-DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       168 ~~G~d~i~vh-~r~~~~~--~~-~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      ++|+|+|+++ |+.....  +. ...+++.++++++.+++|||++|||+|+++++++++...||+|++||+++.||+|+.
T Consensus       250 ~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~  329 (349)
T 3hgj_A          250 ELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPL  329 (349)
T ss_dssp             HTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHH
T ss_pred             HcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHH
Confidence            9999999999 4443221  11 235789999999999999999999999999999996444999999999999999987


Q ss_pred             c
Q 020428          244 S  244 (326)
Q Consensus       244 ~  244 (326)
                      +
T Consensus       330 k  330 (349)
T 3hgj_A          330 R  330 (349)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=100.00  E-value=1.1e-33  Score=272.50  Aligned_cols=237  Identities=13%  Similarity=0.085  Sum_probs=188.2

Q ss_pred             CCCCCceEEccccCC--------CCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      ++++|||++|||...        |+.......++. |+|+++||.+.++......+   ..++.++  +++  ..+.+.+
T Consensus        37 ~~lkNRiv~aPm~~~~a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~~---~~~gi~~d~~i~--~~k~l~~  111 (419)
T 3l5a_A           37 IKISNRFVLSPMTVNASTKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLFE---YGFNIDHDACIP--GLTNMAS  111 (419)
T ss_dssp             CEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCST---TCEECSSGGGHH--HHHHHHH
T ss_pred             CEECCCeEeCCCCCCccCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccCC---CccccccHHHHH--HHHHHHH
Confidence            578999999999863        333444444444 79999999888765432211   1222221  111  1222466


Q ss_pred             cccCCCCcEEEEECCCC----------------------------------------HHHHHHHHHHhhc-CCCEEEEcc
Q 020428           70 TCHQERNHVVFQMGTSD----------------------------------------AVRALTAAKMVCK-DVAAIDINM  108 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~~----------------------------------------~~~~~~aa~~~~~-~~d~idlN~  108 (326)
                      .+|+.+.++++||+...                                        .++|++||+++.+ |||+||||+
T Consensus       112 avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGfDgVEIH~  191 (419)
T 3l5a_A          112 TMKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQQYRDATLRAIKAGFDGVEISI  191 (419)
T ss_dssp             HHHTTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHhcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence            77888889999996311                                        2689999999987 999999999


Q ss_pred             CC---------Cccccccccccccc-cCChHHHHHHHHHHhhcc------cCcEEEEecC--------CCChHHHHHHHH
Q 020428          109 GC---------PKSFSVSGGMGAAL-LSKPELIHDILTMLKRNL------DVPVTCKIRL--------LKSSQDTVELAR  164 (326)
Q Consensus       109 gc---------P~~~~~~~~~G~~l-~~~p~~~~~iv~~v~~~~------~~pv~vK~r~--------g~~~~~~~e~a~  164 (326)
                      +|         |..|.|.++||+++ +++++++.+++++|++++      +.||++|++.        |++.+++.++++
T Consensus       192 ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~  271 (419)
T 3l5a_A          192 AQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLID  271 (419)
T ss_dssp             CTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHH
T ss_pred             ccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHH
Confidence            98         99999999999999 999999999999999987      6799999998        567889999999


Q ss_pred             HHHH-cCCcEEEEeeccc-----CCCCCCc-CCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          165 RIEK-TGVSALAVHGRKV-----ADRPRDP-AKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       165 ~l~~-~G~d~i~vh~r~~-----~~~~~~~-~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .|++ +|+|+|+||+++.     ...+.++ .+++.++.+++.+  ++|||++|||+|+++++++++ . ||+|++||++
T Consensus       272 ~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~-~-aDlVaiGR~~  349 (419)
T 3l5a_A          272 WVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQ-H-ADMVGMSSPF  349 (419)
T ss_dssp             HHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGG-G-CSEEEESTHH
T ss_pred             HHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHH-h-CCcHHHHHHH
Confidence            9999 9999999999864     1222233 3677889999988  699999999999999999996 4 9999999999


Q ss_pred             hcCcccccc
Q 020428          236 LWNASIFSS  244 (326)
Q Consensus       236 l~~P~lf~~  244 (326)
                      +.||+|+.+
T Consensus       350 IanPdlv~k  358 (419)
T 3l5a_A          350 VTEPDFVHK  358 (419)
T ss_dssp             HHCTTHHHH
T ss_pred             HHCcHHHHH
Confidence            999999987

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=100.00  E-value=8.4e-33  Score=282.31  Aligned_cols=241  Identities=16%  Similarity=0.152  Sum_probs=189.6

Q ss_pred             CCCCCceEEccccC-CCC--HHHHHHHHHc------CCCeEEeCceecccccccccccccccCcccccccCCcceeeecc
Q 020428            1 MDYQNKLVLAPMVR-VGT--LPFRLLAAQY------GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g-~t~--~~fr~~~~~~------G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (326)
                      ++++||+++|||.+ .++  .+++.++..|      |+|+++||+++++......+   ...+.++-......+.+.+..
T Consensus        14 ~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v   90 (671)
T 1ps9_A           14 TTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGME---GGAMLNDASQIPHHRTITEAV   90 (671)
T ss_dssp             CEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBT---TCCBCCSGGGHHHHHHHHHHH
T ss_pred             EEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCC---CCCccCCHHHHHHHHHHHHHH
Confidence            56899999999997 444  2344444443      89999999998764322111   112222110000112234456


Q ss_pred             cCCCCcEEEEECCC----------------------CH------------HHHHHHHHHhhc-CCCEEEEccCC------
Q 020428           72 HQERNHVVFQMGTS----------------------DA------------VRALTAAKMVCK-DVAAIDINMGC------  110 (326)
Q Consensus        72 ~~~~~p~~vQl~g~----------------------~~------------~~~~~aa~~~~~-~~d~idlN~gc------  110 (326)
                      |+.+.++++||++.                      .|            ++|+++|+++.+ |||+||||++|      
T Consensus        91 h~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~q  170 (671)
T 1ps9_A           91 HQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINE  170 (671)
T ss_dssp             HHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHH
T ss_pred             HhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHH
Confidence            77788999999873                      23            689999999887 99999999997      


Q ss_pred             ---CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHHHHHHHHHHcCCcEEEEeec
Q 020428          111 ---PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       111 ---P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                         |..|.+.++||++++++++++.++++++|+++  +.||++|++.      |++.+++.++++.++++|+|+|++|++
T Consensus       171 Flsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~  250 (671)
T 1ps9_A          171 FLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIG  250 (671)
T ss_dssp             HHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             hCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCC
Confidence               88999999999999999999999999999999  7899999996      567789999999999999999999987


Q ss_pred             ccCCC------CCCc-CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          180 KVADR------PRDP-AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       180 ~~~~~------~~~~-~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +....      +.++ ..++.++++++.+++||+++|||.|+++++++++..+||+|++||+++.||+|+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k  322 (671)
T 1ps9_A          251 WHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSK  322 (671)
T ss_dssp             BTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHH
T ss_pred             ccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHH
Confidence            65422      1222 34688999999999999999999999999999965559999999999999999986

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=100.00  E-value=1.7e-32  Score=255.46  Aligned_cols=238  Identities=14%  Similarity=0.098  Sum_probs=183.1

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccccc-ccccccc----cCcccccccCCcce--eeeccc-
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKC-ERRVNEY----IGSTDFVEKGTDSV--VFRTCH-   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~~--~~~~~~-   72 (326)
                      ++++||+++||..--.+.+++..+.+.|+|++.|++++.++.... .+...+.    +....+-+......  .+.... 
T Consensus         9 ~~l~npv~~Aag~~~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~   88 (311)
T 1jub_A            9 AKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQK   88 (311)
T ss_dssp             EEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHH
T ss_pred             EEcCCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHH
Confidence            368999999974311389999999999999999999998874221 1100000    00011111100000  011111 


Q ss_pred             CC--CCcEEEEECCCCHHHHHHHHHHhhc-CCC-EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           73 QE--RNHVVFQMGTSDAVRALTAAKMVCK-DVA-AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        73 ~~--~~p~~vQl~g~~~~~~~~aa~~~~~-~~d-~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      ..  +.|+++||+|.+++++.++++.+.+ |+| +||||++||+..     .|..+..+++.+.++++++++.+++||++
T Consensus        89 ~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~-----g~~~~g~~~e~~~~iv~~vr~~~~~Pv~v  163 (311)
T 1jub_A           89 ENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVP-----GEPQLAYDFEATEKLLKEVFTFFTKPLGV  163 (311)
T ss_dssp             HTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSS-----SCCCGGGCHHHHHHHHHHHTTTCCSCEEE
T ss_pred             hcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCC-----CcccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            12  4699999999999999999999987 899 999999999972     25667779999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcCCcEEEEeeccc-----C--------------CCCCCc----CCHHHHHHHHHhc--CC
Q 020428          149 KIRLLKSSQDTVELARRIEKTGVSALAVHGRKV-----A--------------DRPRDP----AKWGEIADIVAAL--SI  203 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~-----~--------------~~~~~~----~~~~~i~~i~~~~--~i  203 (326)
                      |++.+++.++..++++.++++|+|+|++|+++.     +              +.++++    ..++.++++++.+  ++
T Consensus       164 Ki~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~i  243 (311)
T 1jub_A          164 KLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEI  243 (311)
T ss_dssp             EECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTS
T ss_pred             EECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCC
Confidence            999988888899999999999999999998851     1              112233    2478899999999  89


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      |||++|||+|++|+.+++ ..|||+||+||+++. +||+|.+
T Consensus       244 pvi~~GGI~~~~da~~~l-~~GAd~V~vg~~~l~~~p~~~~~  284 (311)
T 1jub_A          244 QIIGTGGIETGQDAFEHL-LCGATMLQIGTALHKEGPAIFDR  284 (311)
T ss_dssp             EEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHHCTHHHHH
T ss_pred             CEEEECCCCCHHHHHHHH-HcCCCEEEEchHHHhcCcHHHHH
Confidence            999999999999999999 589999999999996 9999876

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=99.98  E-value=2.9e-32  Score=258.87  Aligned_cols=241  Identities=15%  Similarity=0.145  Sum_probs=186.5

Q ss_pred             CCCCCceEEccccCC-------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeecc
Q 020428            1 MDYQNKLVLAPMVRV-------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~-------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (326)
                      ++++||+++|||..+       |+........+.  |+|+++||.+.++.-....+   ..++.++-......+.+.+.+
T Consensus        13 ~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~---~~~~i~~d~~i~~~~~~~~~v   89 (363)
T 3l5l_A           13 VTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITP---GCAGIWSDAHAQAFVPVVQAI   89 (363)
T ss_dssp             EEESSSEEECCCCCCCCBTTBCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSST---TCCBCSSHHHHHHHHHHHHHH
T ss_pred             EEeeCceEECCCCCCcCCCCCCCHHHHHHHHHHHccCceEEEecceeeCccccCCC---CcceecCHHHHHHHHHHHHHH
Confidence            468999999999864       334444444443  78999999888765432211   122222210001112245667


Q ss_pred             cCCCCcEEEEECC-----C---------------------------------C--------------HHHHHHHHHHhhc
Q 020428           72 HQERNHVVFQMGT-----S---------------------------------D--------------AVRALTAAKMVCK   99 (326)
Q Consensus        72 ~~~~~p~~vQl~g-----~---------------------------------~--------------~~~~~~aa~~~~~   99 (326)
                      |+.+..+++||++     +                                 .              .++|++||+++.+
T Consensus        90 h~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~  169 (363)
T 3l5l_A           90 KAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD  169 (363)
T ss_dssp             HHTTCEEEEEEECCGGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeccCCccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence            7778888999852     1                                 0              2579999999987


Q ss_pred             -CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC-------CChHHHH
Q 020428          100 -DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL-------KSSQDTV  160 (326)
Q Consensus       100 -~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g-------~~~~~~~  160 (326)
                       |||+||||++         ||..|.+.++||+++.++++++.++++++++++  +.||.+|++..       ++.+++.
T Consensus       170 aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~  249 (363)
T 3l5l_A          170 AGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESI  249 (363)
T ss_dssp             HTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHH
T ss_pred             cCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHH
Confidence             9999999998         699999999999999999999999999999998  58999999973       4567899


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCC---CCCc-CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          161 ELARRIEKTGVSALAVHGRKVADR---PRDP-AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~---~~~~-~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++++.++++|+|+|++++++....   ..++ .+++.++++++.+++|||++|||+|+++++++++..+||+|++||+++
T Consensus       250 ~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~l  329 (363)
T 3l5l_A          250 ELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHL  329 (363)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHH
T ss_pred             HHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHH
Confidence            999999999999999997643211   1222 478899999999999999999999999999999644499999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||+|+.+
T Consensus       330 anPdl~~k  337 (363)
T 3l5l_A          330 ADPHWAYF  337 (363)
T ss_dssp             HCTTHHHH
T ss_pred             hCchHHHH
Confidence            99999876

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=99.98  E-value=3.2e-32  Score=257.41  Aligned_cols=232  Identities=13%  Similarity=0.119  Sum_probs=180.8

Q ss_pred             CCCCCceEEccccCCC--------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeeccc
Q 020428            1 MDYQNKLVLAPMVRVG--------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t--------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (326)
                      ++++|||++|||....        +........+..+|+++||.+.++.-....+   ...+.++-......+.+.+.+|
T Consensus        13 ~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~---~~~gi~~d~~i~~~k~l~~avH   89 (362)
T 4ab4_A           13 LQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVSPMGVGYP---DTPGIWNDEQVRGWNNVTKAVH   89 (362)
T ss_dssp             EEESCSEEECCCCCCCCBTTTBCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCST---TCCBCSSHHHHHHHHHHHHHHH
T ss_pred             EEeeCccEECCccCCccCCCCCCCHHHHHHHHHHHhhCEEeeeeeEecccccCCC---CCCCcCCHHHHHHHHHHHHHHH
Confidence            4689999999998642        3344455555568999999887765432211   1222221000011222456677


Q ss_pred             CCCCcEEEEECCC------------------------------------C------------HHHHHHHHHHhhc-CCCE
Q 020428           73 QERNHVVFQMGTS------------------------------------D------------AVRALTAAKMVCK-DVAA  103 (326)
Q Consensus        73 ~~~~p~~vQl~g~------------------------------------~------------~~~~~~aa~~~~~-~~d~  103 (326)
                      +.+.++++||+..                                    .            .++|++||+++.+ |||+
T Consensus        90 ~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~~a~~aGfDg  169 (362)
T 4ab4_A           90 AAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDG  169 (362)
T ss_dssp             HTTCCEEEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             hcCCEEEEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence            7888899999520                                    0            2578999999987 9999


Q ss_pred             EEEccCC---------CccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCC--------C-hHHHHHHHH
Q 020428          104 IDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLK--------S-SQDTVELAR  164 (326)
Q Consensus       104 idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~--------~-~~~~~e~a~  164 (326)
                      ||||++|         |..|.+.++||++++++++++.+++++|+++++ -||++|++...        + .+++.++++
T Consensus       170 VEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~  249 (362)
T 4ab4_A          170 VEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVAR  249 (362)
T ss_dssp             EEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHH
T ss_pred             EEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHH
Confidence            9999998         999999999999999999999999999999984 39999999741        1 356899999


Q ss_pred             HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          165 RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      .++++|+|+|++|+++.     ++   +.++++++.+++|||++||| |+++++++++..+||+|++||+++.||+|+.+
T Consensus       250 ~l~~~Gvd~i~v~~~~~-----~~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k  320 (362)
T 4ab4_A          250 ELGKRGIAFICSREREA-----DD---SIGPLIKEAFGGPYIVNERF-DKASANAALASGKADAVAFGVPFIANPDLPAR  320 (362)
T ss_dssp             HHHHTTCSEEEEECCCC-----TT---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred             HHHHhCCCEEEECCCCC-----CH---HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHH
Confidence            99999999999999861     22   35788899999999999999 99999999976669999999999999999987

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=99.98  E-value=7.4e-32  Score=251.47  Aligned_cols=238  Identities=13%  Similarity=0.066  Sum_probs=183.1

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccccc-cccccc----ccCcccccccCCccee--eecc-c
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKC-ERRVNE----YIGSTDFVEKGTDSVV--FRTC-H   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~-~~~~~~----~~~~~~~~~~~~~~~~--~~~~-~   72 (326)
                      ++++||+++||+.--.+..++..+.+.|+|++.|+++++++.... .+...+    .+....+-+.......  ++.. .
T Consensus        11 ~~l~nPi~~Aag~~~~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~   90 (314)
T 2e6f_A           11 HVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHD   90 (314)
T ss_dssp             EEESSSEEECTTSSCSSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCC
T ss_pred             EecCCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhh
Confidence            368999999986622468888888999999999999998874211 110000    0000011111111000  1111 1


Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHhhc-CCC---EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMVCK-DVA---AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d---~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      ..+.|+++||+|.+++++.++++.+.+ |+|   +||||++||+..     .+..+..+++.+.++++++++.+++||++
T Consensus        91 ~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~-----g~~~~g~~~~~~~~ii~~vr~~~~~Pv~v  165 (314)
T 2e6f_A           91 YSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVP-----GKPQVAYDFEAMRTYLQQVSLAYGLPFGV  165 (314)
T ss_dssp             TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST-----TCCCGGGSHHHHHHHHHHHHHHHCSCEEE
T ss_pred             cCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCC-----CchhhcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            134699999999999999999999987 889   999999999972     25566778999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcC-CcEEEEeeccc-----C--------------CCCCCc----CCHHHHHHHHHhc-CC
Q 020428          149 KIRLLKSSQDTVELARRIEKTG-VSALAVHGRKV-----A--------------DRPRDP----AKWGEIADIVAAL-SI  203 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~~-----~--------------~~~~~~----~~~~~i~~i~~~~-~i  203 (326)
                      |++.+++.++..++++.++++| +|+|++|+++.     +              +.++++    ..++.++++++.+ ++
T Consensus       166 K~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~i  245 (314)
T 2e6f_A          166 KMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDK  245 (314)
T ss_dssp             EECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTS
T ss_pred             EECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCC
Confidence            9999888888999999999999 99999999761     1              111232    3478999999999 99


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      |||++|||+|++|+.+++ ..|||+||+||+++. +||+|.+
T Consensus       246 pvi~~GGI~~~~da~~~l-~~GAd~V~ig~~~l~~~p~~~~~  286 (314)
T 2e6f_A          246 LVFGCGGVYSGEDAFLHI-LAGASMVQVGTALQEEGPGIFTR  286 (314)
T ss_dssp             EEEEESSCCSHHHHHHHH-HHTCSSEEECHHHHHHCTTHHHH
T ss_pred             CEEEECCCCCHHHHHHHH-HcCCCEEEEchhhHhcCcHHHHH
Confidence            999999999999999999 589999999999996 9999886

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.98  E-value=2e-32  Score=281.89  Aligned_cols=240  Identities=12%  Similarity=0.029  Sum_probs=186.2

Q ss_pred             CCCCCceEEccccCCC--CHH------HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeeccc
Q 020428            1 MDYQNKLVLAPMVRVG--TLP------FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t--~~~------fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (326)
                      ++++||+++|||.+..  +.+      |+..+ +.|+|+++||+++++......+.  ...+.++-......+.+.+..|
T Consensus        18 ~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra-~gG~Gliite~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vh   94 (729)
T 1o94_A           18 KTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKA-EGGWAALNTEYCSINPESDDTHR--LSARIWDEGDVRNLKAMTDEVH   94 (729)
T ss_dssp             EEESSSEEECCCCCSCTTTCHHHHHHHHHHHH-HTTCSEEEEEEEESSTTSCCTTS--CCEECSSHHHHHHHHHHHHHHH
T ss_pred             EEECCccEECCCcCCcCCCCcHHHHHHHHHHh-cCCCCEEEEcceEecCcccCCCC--CCCccCChHHhHHHHHHHHHHH
Confidence            4689999999998753  233      22222 34799999999988643221110  0111111000001122345567


Q ss_pred             CCCCcEEEEECCC---------------------------C------------HHHHHHHHHHhhc-CCCEEEEccCC--
Q 020428           73 QERNHVVFQMGTS---------------------------D------------AVRALTAAKMVCK-DVAAIDINMGC--  110 (326)
Q Consensus        73 ~~~~p~~vQl~g~---------------------------~------------~~~~~~aa~~~~~-~~d~idlN~gc--  110 (326)
                      +.+.++++||++.                           .            .++|++||+++.+ |||+||||++|  
T Consensus        95 ~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~gy  174 (729)
T 1o94_A           95 KYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSY  174 (729)
T ss_dssp             TTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTC
T ss_pred             hCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch
Confidence            8888999999872                           1            3789999999987 99999999999  


Q ss_pred             -------CccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC-------CCC-hHHHHHHHHHHHHcCCcE
Q 020428          111 -------PKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL-------LKS-SQDTVELARRIEKTGVSA  173 (326)
Q Consensus       111 -------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~-------g~~-~~~~~e~a~~l~~~G~d~  173 (326)
                             |..|.+.++||++++++++++.+++++|++++  +.||++|++.       |++ .+++.++++.+++ |+|+
T Consensus       175 Ll~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~~-~~d~  253 (729)
T 1o94_A          175 LPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADS-LVDM  253 (729)
T ss_dssp             HHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGG-GCSE
T ss_pred             HHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHHHh-hcCE
Confidence                   99999999999999999999999999999999  7899999985       455 5688999999988 7999


Q ss_pred             EEEeeccc--------CCCCCCc-CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          174 LAVHGRKV--------ADRPRDP-AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       174 i~vh~r~~--------~~~~~~~-~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      |.+|++..        ...+.++ .+++.++++++.+++|||++|||.|+++++++++..+||+||+||+++.||+|+.+
T Consensus       254 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~  333 (729)
T 1o94_A          254 WDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQK  333 (729)
T ss_dssp             EEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHH
T ss_pred             EEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHH
Confidence            99998741        1122222 26889999999999999999999999999999976669999999999999999987

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=99.97  E-value=5.8e-32  Score=255.56  Aligned_cols=232  Identities=13%  Similarity=0.104  Sum_probs=180.5

Q ss_pred             CCCCCceEEccccCCC--------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeeccc
Q 020428            1 MDYQNKLVLAPMVRVG--------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t--------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (326)
                      ++++|||++|||....        +........+..+|+++||.+.++......+   ...+.++-......+.+.+.+|
T Consensus        21 ~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~---~~~gi~~d~~i~~~k~l~~avH   97 (361)
T 3gka_A           21 LTLANRIIMAPLTRARAGDTRTPNALMARYYAERASAGLIISEATSVTPQGVGYA---STPGIWSPEQVDGWRLVTDAVH   97 (361)
T ss_dssp             EEESCSEEECCCCCCCSTTTTCCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCST---TCCBSSSHHHHHHHHHHHHHHH
T ss_pred             EEecCccEECCCCCCccCCCCCCCHHHHHHHHHHHhCCEEEEcceeecccccCCC---CCCccCCHHHHHHHHHHHHHHH
Confidence            4689999999998642        2334444444458999999888765432211   1222221000011222456677


Q ss_pred             CCCCcEEEEECC--C----------------------------------C------------HHHHHHHHHHhhc-CCCE
Q 020428           73 QERNHVVFQMGT--S----------------------------------D------------AVRALTAAKMVCK-DVAA  103 (326)
Q Consensus        73 ~~~~p~~vQl~g--~----------------------------------~------------~~~~~~aa~~~~~-~~d~  103 (326)
                      +.+.++++||+.  .                                  .            .++|++||+++.+ |||+
T Consensus        98 ~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii~~f~~AA~~A~~aGfDg  177 (361)
T 3gka_A           98 AAGGRIFLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENARAAGFDG  177 (361)
T ss_dssp             HTTCCEEEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             hcCCeEEEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence            788889999952  0                                  0            2579999999987 9999


Q ss_pred             EEEccCC---------CccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCCC---------ChHHHHHHHH
Q 020428          104 IDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLLK---------SSQDTVELAR  164 (326)
Q Consensus       104 idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g~---------~~~~~~e~a~  164 (326)
                      ||||++|         |..|.+.++||++++++++++.+++++||++++. ||++|++...         +.+++.++++
T Consensus       178 VEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~  257 (361)
T 3gka_A          178 VEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVAR  257 (361)
T ss_dssp             EEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHH
T ss_pred             EEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHH
Confidence            9999998         9999999999999999999999999999999843 9999999731         1357899999


Q ss_pred             HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          165 RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      .++++|+|+|++|+++.     ++   +.++++++.+++|||++||| |+++++++++..+||+|++||+++.||+|+.+
T Consensus       258 ~l~~~Gvd~i~v~~~~~-----~~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k  328 (361)
T 3gka_A          258 ELGRRRIAFLFARESFG-----GD---AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIANPDLPRR  328 (361)
T ss_dssp             HHHHTTCSEEEEECCCS-----TT---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred             HHHHcCCCEEEECCCCC-----CH---HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHH
Confidence            99999999999998861     22   45788899999999999999 99999999976669999999999999999987

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.97  E-value=4.7e-32  Score=277.59  Aligned_cols=241  Identities=12%  Similarity=0.059  Sum_probs=186.3

Q ss_pred             CCCCCceEEccccCCCCH-------HHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccC
Q 020428            1 MDYQNKLVLAPMVRVGTL-------PFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ   73 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~-------~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (326)
                      ++++||+++|||++.+..       .|+....+.|+|+++||+++++......+.  ...+.++-......+.+.+..|+
T Consensus        23 ~~l~NRiv~apm~~~~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vh~  100 (690)
T 3k30_A           23 FTTKNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPF--IELRIWDDQDLPALKRIADAIHE  100 (690)
T ss_dssp             EECSSSEEECCCCCSCSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTS--CCEECSSGGGHHHHHHHHHHHHH
T ss_pred             EEECCCeEeCCCcCCCCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCC--cCCccCCHHHHHHHHHHHHHHHh
Confidence            468999999999975432       245445566899999999998765432211  01111110000011224556677


Q ss_pred             CCCcEEEEECCC--------------------------C---------------HHHHHHHHHHhhc-CCCEEEEccCCC
Q 020428           74 ERNHVVFQMGTS--------------------------D---------------AVRALTAAKMVCK-DVAAIDINMGCP  111 (326)
Q Consensus        74 ~~~p~~vQl~g~--------------------------~---------------~~~~~~aa~~~~~-~~d~idlN~gcP  111 (326)
                      .+.++++||++.                          .               .++|++||+++.+ |||+||||++|+
T Consensus       101 ~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVeih~a~g  180 (690)
T 3k30_A          101 GGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHG  180 (690)
T ss_dssp             TTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTT
T ss_pred             cCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc
Confidence            888999999841                          0               3789999999987 999999988855


Q ss_pred             c----------cccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC------CCChHHHHHHHHHHHHcCCcE
Q 020428          112 K----------SFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL------LKSSQDTVELARRIEKTGVSA  173 (326)
Q Consensus       112 ~----------~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~  173 (326)
                      +          .|.+.++||++++++++++.++++++++++  +.||.+|+..      |++.+++.++++.+++ |+|+
T Consensus       181 y~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~  259 (690)
T 3k30_A          181 YSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDL  259 (690)
T ss_dssp             CSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSE
T ss_pred             chHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCE
Confidence            4          788999999999999999999999999999  5678888854      4667889999999998 8999


Q ss_pred             EEEeeccc-----CCCC-CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          174 LAVHGRKV-----ADRP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       174 i~vh~r~~-----~~~~-~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      |+||+++.     ...+ .....++.++++++.+++|||++|||+|+++++++++..+||+|++||+++.||||+.+
T Consensus       260 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~  336 (690)
T 3k30_A          260 WDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNK  336 (690)
T ss_dssp             EEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred             EEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHH
Confidence            99998642     1122 22345788899999999999999999999999999976669999999999999999987

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=99.97  E-value=1.8e-31  Score=251.16  Aligned_cols=238  Identities=14%  Similarity=0.097  Sum_probs=180.6

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-cccccc----ccccCcccccccCCccee--eecc-c
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRV----NEYIGSTDFVEKGTDSVV--FRTC-H   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~-~   72 (326)
                      ++++||+++|.=..-.+..+-..+...|+|.+.+..+..++-. ...+..    ...++...|-+...+.++  +... .
T Consensus        44 l~~~NPv~lAAG~~~~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~~~~  123 (354)
T 4ef8_A           44 NTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHD  123 (354)
T ss_dssp             EEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHHHTCC
T ss_pred             EECCCCCEeccCCCCCCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHHHHHHHHhh
Confidence            4689999998744435677777777889999988877766421 111111    011111111111111100  1111 1


Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHhh---c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMVC---K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~~---~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      ..+.|+++||+|++++++.++++.+.   + ++|+||||+|||+.+    + |..|+.+|+.+.++++++++.+++||+|
T Consensus       124 ~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~----g-g~~l~~~~e~~~~il~av~~~~~~PV~v  198 (354)
T 4ef8_A          124 YGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP----G-KPQVAYDFDAMRQCLTAVSEVYPHSFGV  198 (354)
T ss_dssp             TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST----T-SCCGGGSHHHHHHHHHHHHHHCCSCEEE
T ss_pred             cCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC----C-chhhccCHHHHHHHHHHHHHhhCCCeEE
Confidence            23469999999999999999999987   4 799999999999984    3 6788899999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcC-CcEEEEeecc------------cC-------CCCCC----cCCHHHHHHHHHhc-CC
Q 020428          149 KIRLLKSSQDTVELARRIEKTG-VSALAVHGRK------------VA-------DRPRD----PAKWGEIADIVAAL-SI  203 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~------------~~-------~~~~~----~~~~~~i~~i~~~~-~i  203 (326)
                      |+|.+++..+..++++.++++| +|+|++++.+            ..       +.++|    |.+|+.++++++.. ++
T Consensus       199 Ki~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~i  278 (354)
T 4ef8_A          199 KMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGK  278 (354)
T ss_dssp             EECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTS
T ss_pred             EecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCC
Confidence            9999998888889999999998 9999875432            11       12344    35799999999986 79


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~  244 (326)
                      |||++|||+|++|+.+++ ..|||+||+||+++.+ ||+|.+
T Consensus       279 pII~~GGI~s~~da~~~l-~aGAd~V~vgra~l~~GP~~~~~  319 (354)
T 4ef8_A          279 LIFGCGGVYTGEDAFLHV-LAGASMVQVGTALQEEGPSIFER  319 (354)
T ss_dssp             EEEEESCCCSHHHHHHHH-HHTEEEEEECHHHHHHCTTHHHH
T ss_pred             CEEEECCcCCHHHHHHHH-HcCCCEEEEhHHHHHhCHHHHHH
Confidence            999999999999999999 5899999999999998 999886

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=99.97  E-value=2.9e-31  Score=249.74  Aligned_cols=234  Identities=17%  Similarity=0.201  Sum_probs=177.6

Q ss_pred             CCCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccc-ccccccc------ccCcccccccCCcceeeeccc
Q 020428            1 MDYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLK-CERRVNE------YIGSTDFVEKGTDSVVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~   72 (326)
                      ++++||+++|++  +++ ..++..+.+.|++++.|++++.++... ..+....      .++...+.+..... +.+..+
T Consensus        52 ~~l~npi~~aag--~~~~~~~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~-~~~~~~  128 (336)
T 1f76_A           52 LTFKNPLGLAAG--LDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDN-LVENVK  128 (336)
T ss_dssp             EEESSSEEECTT--SSTTCCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHH-HHHHHH
T ss_pred             EEcCCCcEeCcc--cCCcHHHHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHH-HHHHHH
Confidence            357999999965  443 347888889999999999998875321 0110000      00000011111011 111111


Q ss_pred             C--CCCcEEEEECCCC-------HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-
Q 020428           73 Q--ERNHVVFQMGTSD-------AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-  142 (326)
Q Consensus        73 ~--~~~p~~vQl~g~~-------~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-  142 (326)
                      .  .+.|+++||++++       ++++.++++++.+++|+|+||++||+.+      |...+.+++++.++++++++.+ 
T Consensus       129 ~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~------g~~~~~~~~~~~~il~~vr~~~~  202 (336)
T 1f76_A          129 KAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQN  202 (336)
T ss_dssp             HCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHH
T ss_pred             hcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHH
Confidence            1  2358999999988       8999999999877999999999999864      3445778999999999999988 


Q ss_pred             --------cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------------CCCCcC----CHHHHHHH
Q 020428          143 --------DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------------RPRDPA----KWGEIADI  197 (326)
Q Consensus       143 --------~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------------~~~~~~----~~~~i~~i  197 (326)
                              ++||++|++.+++.++..++++.++++|+|+|++|+++...             .+++++    .++.++++
T Consensus       203 ~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i  282 (336)
T 1f76_A          203 DLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRL  282 (336)
T ss_dssp             HHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHH
T ss_pred             hhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHH
Confidence                    89999999988888899999999999999999999876321             122332    35788899


Q ss_pred             HHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          198 VAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       198 ~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      ++.+  ++|||++|||+|++|+.++++ .|||+||+||+++. |||+|.+
T Consensus       283 ~~~~~~~ipVi~~GGI~~~~da~~~l~-~GAd~V~igr~~l~~~P~~~~~  331 (336)
T 1f76_A          283 SLELNGRLPIIGVGGIDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKE  331 (336)
T ss_dssp             HHHHTTSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHH
T ss_pred             HHHhCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEeeHHHHhcCcHHHHH
Confidence            9988  899999999999999999994 89999999999998 9999976

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=99.97  E-value=1e-30  Score=247.71  Aligned_cols=236  Identities=18%  Similarity=0.176  Sum_probs=174.7

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-ccccccc------cccCcccccccCCcce---eeec
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRVN------EYIGSTDFVEKGTDSV---VFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~------~~~~~~~~~~~~~~~~---~~~~   70 (326)
                      ++++||+++|.=..-....++.+.. .|.|.+.+..++.++-. ...+...      ..++..-|-+......   +...
T Consensus        57 l~~~NPvglAaG~~~~~~~~~~~~~-~g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~~G~~N~G~~~~~~~l~~~  135 (367)
T 3zwt_A           57 HKFRNPVGIAAGFDKHGEAVDGLYK-MGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRAR  135 (367)
T ss_dssp             EEESSSEEECTTSSTTSSSHHHHHH-TTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTT
T ss_pred             EEcCCCCEeCCCcCCCHHHHHHHHh-cCcCeEEeCCccCCCCCCCCCCeEEEecCccceeeccCCCCccHHHHHHHHHHH
Confidence            3689999999422212234555554 59999999988876422 1111110      0111111111110000   0000


Q ss_pred             ------ccCCCCcEEEEECCC-----CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh
Q 020428           71 ------CHQERNHVVFQMGTS-----DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK  139 (326)
Q Consensus        71 ------~~~~~~p~~vQl~g~-----~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~  139 (326)
                            .+..+.|+++||+|+     +++++.++++.+.+++|+||||+|||+.+      |..++.+++.+.+++++++
T Consensus       136 ~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~------G~~~l~~~~~l~~ll~av~  209 (367)
T 3zwt_A          136 QQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTA------GLRSLQGKAELRRLLTKVL  209 (367)
T ss_dssp             HHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHH
T ss_pred             hhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCC------CccccCCHHHHHHHHHHHH
Confidence                  001246999999997     68999999999988899999999999984      4457899999999999997


Q ss_pred             hc-------ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-------------CCCCCcC----CHHHHH
Q 020428          140 RN-------LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-------------DRPRDPA----KWGEIA  195 (326)
Q Consensus       140 ~~-------~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------~~~~~~~----~~~~i~  195 (326)
                      +.       +++||+||++.+++.++..++|+.++++|+|+|++|+++..             +.++|++    .++.++
T Consensus       210 ~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~  289 (367)
T 3zwt_A          210 QERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIR  289 (367)
T ss_dssp             HHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHH
T ss_pred             HHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHH
Confidence            64       68999999999998889999999999999999999998743             1233443    358899


Q ss_pred             HHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh-cCcccccc
Q 020428          196 DIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL-WNASIFSS  244 (326)
Q Consensus       196 ~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l-~~P~lf~~  244 (326)
                      ++++.+  ++|||++|||.|++|+.+++ ..|||+||+||+++ .+||+|.+
T Consensus       290 ~i~~~v~~~ipvI~~GGI~s~~da~~~l-~~GAd~V~vgra~l~~gP~~~~~  340 (367)
T 3zwt_A          290 EMYALTQGRVPIIGVGGVSSGQDALEKI-RAGASLVQLYTALTFWGPPVVGK  340 (367)
T ss_dssp             HHHHHTTTCSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCTHHHHH
T ss_pred             HHHHHcCCCceEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHhcCcHHHHH
Confidence            999999  89999999999999999999 58999999999995 58999876

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=99.97  E-value=9.1e-31  Score=245.81  Aligned_cols=235  Identities=17%  Similarity=0.111  Sum_probs=172.8

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-ccccccc----cccCcccccccCCcce---eeecc-
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRVN----EYIGSTDFVEKGTDSV---VFRTC-   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~-   71 (326)
                      ++++||+++|.=..-.+..+...+...|+|.+.+..++.++-. ...+...    ..++...|-+...+.+   +.... 
T Consensus        45 l~~~NPv~lAaG~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~~~~  124 (345)
T 3oix_A           45 FDFDNCLMNAAGVYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDYVTELQK  124 (345)
T ss_dssp             EEESCSEEECTTSSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHHHHHHHHH
T ss_pred             EECCCCCEEcCCCCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHHHHHHHhh
Confidence            4689999999422224668888888899999999998876421 1111110    1111111111111110   11111 


Q ss_pred             cCCCCcEEEEECCCCHHHHHHHHHHhhc-CCC-EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE
Q 020428           72 HQERNHVVFQMGTSDAVRALTAAKMVCK-DVA-AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK  149 (326)
Q Consensus        72 ~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d-~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK  149 (326)
                      ...+.|+++||+|++++++.++++.+++ +++ +||||+|||+.+     .|..++.+|+.+.++++++++.+++||+||
T Consensus       125 ~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~-----G~~~l~~~~e~l~~il~av~~~~~~PV~vK  199 (345)
T 3oix_A          125 QPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP-----GXPQIAYDFETTDQILSEVFTYFTKPLGIK  199 (345)
T ss_dssp             STTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST-----TCCCGGGCHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             ccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC-----CchhhcCCHHHHHHHHHHHHHHhCCCeEEE
Confidence            2235699999999999999999999976 776 999999999985     257888999999999999999999999999


Q ss_pred             ecCCCChHHHHHHHHHHHHcCCcEEE-------------EeecccC-------CCCCCcCC----HHHHHHHHHhc--CC
Q 020428          150 IRLLKSSQDTVELARRIEKTGVSALA-------------VHGRKVA-------DRPRDPAK----WGEIADIVAAL--SI  203 (326)
Q Consensus       150 ~r~g~~~~~~~e~a~~l~~~G~d~i~-------------vh~r~~~-------~~~~~~~~----~~~i~~i~~~~--~i  203 (326)
                      +|.+.+   ..++++.++++|++.|+             +|.|+..       +.++|++.    |+.++++++.+  ++
T Consensus       200 i~p~~~---~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~i  276 (345)
T 3oix_A          200 LPPYFD---IVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSI  276 (345)
T ss_dssp             ECCCCC---HHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTS
T ss_pred             ECCCCC---HHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCC
Confidence            998754   45666777776666553             4444321       23455655    78899999998  79


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccc-hhcCcccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARG-ALWNASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~-~l~~P~lf~~  244 (326)
                      |||++|||.|++|+.+++ ..|||+|||||+ ++.+||+|.+
T Consensus       277 pIIg~GGI~s~~da~~~l-~aGAd~V~igra~~~~gP~~~~~  317 (345)
T 3oix_A          277 QIIGTGGVXTGRDAFEHI-LCGASMVQIGTALHQEGPQIFKR  317 (345)
T ss_dssp             EEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCTHHHHH
T ss_pred             cEEEECCCCChHHHHHHH-HhCCCEEEEChHHHhcChHHHHH
Confidence            999999999999999999 589999999999 7889999876

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=99.97  E-value=2.6e-30  Score=246.18  Aligned_cols=236  Identities=14%  Similarity=0.114  Sum_probs=176.8

Q ss_pred             CCCCCceEEccccCCC----------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRVG----------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t----------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (326)
                      ++++|||++|||....          +........+.|+||++||.+.++.-....+   ...+.++-......+.+.+.
T Consensus        16 ~~l~NRiv~apm~~~~a~~~~g~pt~~~~~~yY~~rA~~GLIite~~~v~~~g~~~~---~~~gi~~d~~i~~~k~~~~a   92 (379)
T 3aty_A           16 YTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRASAGLIIAEATMVQPNYTGFL---TEPGIYSDAQIEEWRKIVDA   92 (379)
T ss_dssp             EEESCSEEECCCCCCCBCTTTCCBCHHHHHHHHHTTTTSSEEEEEEEESSTTCCSSS---SCCBSSSHHHHHHHHHHHHH
T ss_pred             EEEcCccEECCcCCCcccCCCCccCHHHHHHHHHHHhCCCeEEECceecccccccCC---CCCCcCCHHHHHHHHHHHHH
Confidence            4689999999998532          3334455555689999999887664322111   11222110000011223445


Q ss_pred             ccCCCCcEEEEECC----------------------------------------------------------------CC
Q 020428           71 CHQERNHVVFQMGT----------------------------------------------------------------SD   86 (326)
Q Consensus        71 ~~~~~~p~~vQl~g----------------------------------------------------------------~~   86 (326)
                      +|+.+.++++||++                                                                ..
T Consensus        93 vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~g~~~~~~~~~apS~i~~~~~~~~~~~~~~g~~~~~~~pr~lt~~eI~~~~  172 (379)
T 3aty_A           93 VHKKGGLIFLQLIHAGRAGIPEKILQQSKSDQDPLAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEELTDDEVRDGI  172 (379)
T ss_dssp             HHHTTCCEEEEEECCGGGSCHHHHTTSCCCSSSTTTTCCEESSSCCCCSCCBCTTTSTTSSCBCCCCCEECCHHHHHHTH
T ss_pred             HHhcCCEEEEEeccCCcccCcccccccccCCCCCccCcccCCCCCccccccccccccccccccCCCCCccCCHHHHhHHH
Confidence            55566666666631                                                                11


Q ss_pred             HHHHHHHHHHhh-c-CCCEEEEccCC---------Cccccc-cccccc-cccCChHHHHHHHHHHhhccc-CcEEEEecC
Q 020428           87 AVRALTAAKMVC-K-DVAAIDINMGC---------PKSFSV-SGGMGA-ALLSKPELIHDILTMLKRNLD-VPVTCKIRL  152 (326)
Q Consensus        87 ~~~~~~aa~~~~-~-~~d~idlN~gc---------P~~~~~-~~~~G~-~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~  152 (326)
                      .++|+++|+++. + |||+||||++|         |..+.+ .++||+ +++++++++.+++++|+++++ .||.+|++.
T Consensus       173 i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~  252 (379)
T 3aty_A          173 IPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISP  252 (379)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence            346778999988 7 99999999996         888888 999999 999999999999999999985 489999998


Q ss_pred             C---------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          153 L---------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       153 g---------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      .         ++.+++.++++.++++|+|+|++|+++....  .. ..+ ++++++.+++|||++||| |+++++++++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~--~~-~~~-~~~ir~~~~iPvi~~G~i-t~~~a~~~l~~  327 (379)
T 3aty_A          253 LNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQ--QI-GDV-VAWVRGSYSGVKISNLRY-DFEEADQQIRE  327 (379)
T ss_dssp             TCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSC--CC-CCH-HHHHHTTCCSCEEEESSC-CHHHHHHHHHT
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCC--Cc-cHH-HHHHHHHCCCcEEEECCC-CHHHHHHHHHc
Confidence            3         2356789999999999999999998753221  11 236 889999999999999999 99999999976


Q ss_pred             cCCcEEEeccchhcCcccccc
Q 020428          224 AGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      .+||+|++||+++.||+|+.+
T Consensus       328 g~aD~V~igR~~l~~P~l~~k  348 (379)
T 3aty_A          328 GKVDAVAFGAKFIANPDLVER  348 (379)
T ss_dssp             TSCSEEEESHHHHHCTTHHHH
T ss_pred             CCCeEEEecHHHHhCcHHHHH
Confidence            669999999999999999987

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=99.97  E-value=1.3e-29  Score=244.77  Aligned_cols=235  Identities=17%  Similarity=0.165  Sum_probs=179.4

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccc-cccccc------cccCcccccccCCcceeeeccc-
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK-CERRVN------EYIGSTDFVEKGTDSVVFRTCH-   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-   72 (326)
                      ++++||+++|++..-....++.+ .+.|+|++.++++++++-.. ..+...      ..++...|-+...+. +.+..+ 
T Consensus        89 l~~~NPvglAAG~dk~~~~~~~l-~~~GfG~v~~gtvT~~pq~GNp~PR~~rl~e~~~iiN~~GfnN~G~~~-~~~~l~~  166 (443)
T 1tv5_A           89 LDFINPFGVAAGFDKNGVCIDSI-LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDK-VTENLIL  166 (443)
T ss_dssp             EEESSSEEECTTTTTTCSSHHHH-HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHH-HHHHHHH
T ss_pred             EEeCCCcEECCcccCccHHHHHH-HhcCCCEEEEeeeecCCCCCCCCccEEeccccceeeeccccCChhHHH-HHHHHHH
Confidence            46899999998775444566664 66799999999999865321 111110      001111111111011 000000 


Q ss_pred             ---C-------CCCcEEEEECCCC-----HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHH
Q 020428           73 ---Q-------ERNHVVFQMGTSD-----AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTM  137 (326)
Q Consensus        73 ---~-------~~~p~~vQl~g~~-----~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~  137 (326)
                         .       ...|+++||++++     ++++.++++.+.+++|+||||++||+.+      |...+++++.+.+++++
T Consensus       167 ~~~~~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~------Glr~lq~~~~l~~il~~  240 (443)
T 1tv5_A          167 FRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILS  240 (443)
T ss_dssp             HHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHH
T ss_pred             HhhhcccccccCCceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCc------ccccccCHHHHHHHHHH
Confidence               0       1348999999998     8999999999988999999999999974      68889999999999999


Q ss_pred             Hhhc--------------------------------------------------ccCc-EEEEecCCCChHHHHHHHHHH
Q 020428          138 LKRN--------------------------------------------------LDVP-VTCKIRLLKSSQDTVELARRI  166 (326)
Q Consensus       138 v~~~--------------------------------------------------~~~p-v~vK~r~g~~~~~~~e~a~~l  166 (326)
                      ++++                                                  .++| |+||++.+++.++..++|+.+
T Consensus       241 v~~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~  320 (443)
T 1tv5_A          241 VKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVL  320 (443)
T ss_dssp             HHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            9864                                                  3678 999999988888999999999


Q ss_pred             HHcCCcEEEEeecccCC-----------CCCCcC----CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          167 EKTGVSALAVHGRKVAD-----------RPRDPA----KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~~-----------~~~~~~----~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +++|+|+|++|+++...           .++|++    .++.++++++.+  ++|||++|||.|++|+.+++ ..|||+|
T Consensus       321 ~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l-~aGAd~V  399 (443)
T 1tv5_A          321 LETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKI-EAGASVC  399 (443)
T ss_dssp             HHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHH-HTTEEEE
T ss_pred             HHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHH-HcCCCEE
Confidence            99999999999997632           222332    367899999998  89999999999999999999 5899999


Q ss_pred             Eeccchhc-Ccccccc
Q 020428          230 MAARGALW-NASIFSS  244 (326)
Q Consensus       230 miGr~~l~-~P~lf~~  244 (326)
                      |+||+++. +||++.+
T Consensus       400 qigrall~~gP~l~~~  415 (443)
T 1tv5_A          400 QLYSCLVFNGMKSAVQ  415 (443)
T ss_dssp             EESHHHHHHGGGHHHH
T ss_pred             EEcHHHHhcChHHHHH
Confidence            99999886 9998876

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=99.96  E-value=1.8e-29  Score=240.78  Aligned_cols=236  Identities=17%  Similarity=0.177  Sum_probs=169.6

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-ccccccc------cccCcccccccCCcce---eeec
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRVN------EYIGSTDFVEKGTDSV---VFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~~------~~~~~~~~~~~~~~~~---~~~~   70 (326)
                      ++++||+++|.=..-....++.+ .+.|+|.+.+..+.+++-. ...+..-      ..++..-|-+......   +...
T Consensus        91 l~f~NPvglAAG~dk~~~~~~~l-~~lGfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~~GfnN~G~d~~~~~l~~~  169 (415)
T 3i65_A           91 LDFINPFGVAAGFDKNGVCIDSI-LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILF  169 (415)
T ss_dssp             EEESSSEEECTTSSTTCSSHHHH-HTTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCSCBCCHHHHHHHHHHH
T ss_pred             EECCCCCEECCCCCCCHHHHHHH-HHcCCCeEEeCcccCCcCCCCCCCeEEeccCCCceeecCCCCchhHHHHHHHHHHH
Confidence            46899999986332222234433 3679999988888766421 1111110      0111111211111110   0000


Q ss_pred             ccC-------CCCcEEEEECCCC-----HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHH
Q 020428           71 CHQ-------ERNHVVFQMGTSD-----AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTML  138 (326)
Q Consensus        71 ~~~-------~~~p~~vQl~g~~-----~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v  138 (326)
                      ...       ...|+++||++++     ++++.++++.+.+.+|.||||++||+.+      |..++++++.+.++++++
T Consensus       170 ~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~------Gl~~lq~~~~l~~ll~aV  243 (415)
T 3i65_A          170 RKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSV  243 (415)
T ss_dssp             HHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------------CCHHHHHHHHHH
T ss_pred             HhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------CcccccCHHHHHHHHHHH
Confidence            000       1347999999998     8999999999987899999999999984      678999999999999999


Q ss_pred             hhc--------------------ccCc-EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-----------CCCC
Q 020428          139 KRN--------------------LDVP-VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-----------DRPR  186 (326)
Q Consensus       139 ~~~--------------------~~~p-v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------~~~~  186 (326)
                      ++.                    ..+| |+||++.+++.++..++|+.++++|+|+|++|+++..           +.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlS  323 (415)
T 3i65_A          244 KEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS  323 (415)
T ss_dssp             HHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEE
T ss_pred             HHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcC
Confidence            875                    2689 9999999998889999999999999999999998863           2344


Q ss_pred             CcCCH----HHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428          187 DPAKW----GEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS  244 (326)
Q Consensus       187 ~~~~~----~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~  244 (326)
                      |++.|    +.++++++.+  ++|||++|||+|++|+.+++ ..|||+|||||+++.+ ||++.+
T Consensus       324 G~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l-~aGAd~VqIgra~l~~GP~~~~~  387 (415)
T 3i65_A          324 GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKI-EAGASVCQLYSCLVFNGMKSAVQ  387 (415)
T ss_dssp             EGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHH-HHTEEEEEESHHHHHHGGGHHHH
T ss_pred             CccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH-HcCCCEEEEcHHHHhcCHHHHHH
Confidence            55555    7899999998  79999999999999999999 5899999999999986 998876

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=99.96  E-value=1.4e-30  Score=248.55  Aligned_cols=242  Identities=13%  Similarity=0.079  Sum_probs=181.8

Q ss_pred             CCCCCceEEccccCC--------CCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (326)
                      ++++|||++|||...        |+........+.  |+|+++||.+.++.-....+.  ...+.++-......+.+.+.
T Consensus        23 ~~LkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~gG~GLIIte~~~V~~~g~~~~~--~~~gi~~d~~i~~~k~l~~a  100 (407)
T 3tjl_A           23 NTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEG--AAPGIWTDKHAKAWKVITDK  100 (407)
T ss_dssp             EEESCSEEBCCCCCCBSCTTSCCBHHHHHHHHHTCCSTTCEEEEEEEESSGGGCCCSS--BCCBCSSHHHHHHHHHHHHH
T ss_pred             EEecCCcEECCCCCCccCCCCCCCHHHHHHHHHHHcCCceEEEEcceEECCccCCCCC--cCcccCCHHHHHHHHHHHHH
Confidence            468999999999863        234444555554  589999998877654322111  01222211000112224667


Q ss_pred             ccCCCCcEEEEECCC----C---------------------------------------------HHH-HHHHHHHhhc-
Q 020428           71 CHQERNHVVFQMGTS----D---------------------------------------------AVR-ALTAAKMVCK-   99 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~----~---------------------------------------------~~~-~~~aa~~~~~-   99 (326)
                      +|+.+.++++||++.    .                                             .++ |++||+++.+ 
T Consensus       101 vH~~G~~i~~QL~H~Gr~~~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~pr~lt~~eI~~ii~~~~~~aa~~a~~a  180 (407)
T 3tjl_A          101 VHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTNAAQKAMDA  180 (407)
T ss_dssp             HHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESSSCCSSHHHHHHHHHTTCCCEECCHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHhcCCEEEEEeccCCCccchhhcccCCCcccCCCCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888999999631    0                                             135 8999999887 


Q ss_pred             CCCEEEEccCC---------CccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCCC---------C----h
Q 020428          100 DVAAIDINMGC---------PKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLLK---------S----S  156 (326)
Q Consensus       100 ~~d~idlN~gc---------P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g~---------~----~  156 (326)
                      |||+||||++|         |..|.+.++||++++++++++.+|+++|+++++ .||++|++...         +    .
T Consensus       181 Gfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~  260 (407)
T 3tjl_A          181 GFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPL  260 (407)
T ss_dssp             TCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHH
T ss_pred             CCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccH
Confidence            99999999999         999999999999999999999999999999985 48999999721         2    3


Q ss_pred             HHHHHHHHHH---HHcC--CcEEEEe-ecccCCCCCCcC-CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh---cCC
Q 020428          157 QDTVELARRI---EKTG--VSALAVH-GRKVADRPRDPA-KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA---AGA  226 (326)
Q Consensus       157 ~~~~e~a~~l---~~~G--~d~i~vh-~r~~~~~~~~~~-~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~---~Ga  226 (326)
                      +++.++++.|   ++.|  +++|+|| +|+..+.+..+. .|+.+..+++.+++|||+||||++.+|+.++++.   .+|
T Consensus       261 ~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~a  340 (407)
T 3tjl_A          261 TTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKR  340 (407)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCC
Confidence            4578899999   8889  9999998 665543322221 3455677888889999999999999988877765   779


Q ss_pred             cEEEeccchhcCcccccc
Q 020428          227 SSVMAARGALWNASIFSS  244 (326)
Q Consensus       227 d~VmiGr~~l~~P~lf~~  244 (326)
                      |+|++||+++.||+|+.+
T Consensus       341 DlVa~GR~~iaNPdL~~r  358 (407)
T 3tjl_A          341 TLVGFSRYFTSNPNLVWK  358 (407)
T ss_dssp             EEEECSHHHHHCTTHHHH
T ss_pred             eEEEeChhhhhCchHHHH
Confidence            999999999999999986

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=99.96  E-value=1.3e-29  Score=235.65  Aligned_cols=236  Identities=18%  Similarity=0.265  Sum_probs=171.9

Q ss_pred             CCCCCceEEcc-ccCCCCHHHHHHHHHcCCCeEEeCceecccccccc-cccc----cccCcccccccCCcce---eeecc
Q 020428            1 MDYQNKLVLAP-MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCE-RRVN----EYIGSTDFVEKGTDSV---VFRTC   71 (326)
Q Consensus         1 l~l~~~iilAP-M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~-~~~~----~~~~~~~~~~~~~~~~---~~~~~   71 (326)
                      ++++||+++|| |.+.++ .++..+...|+|++.|+-+..++..... +...    ..++...+.+......   .++..
T Consensus        14 ~~l~npi~~aag~~~~~~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~~~~~~~~~~~~~~~~~   92 (311)
T 1ep3_A           14 LDLKNPIIPASGCFGFGE-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKLPWL   92 (311)
T ss_dssp             EEESSSEEECTTSSTTST-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTHHHHH
T ss_pred             EECCCCcEECCCCCCCCH-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCCCCcCHHHHHHHHHHHH
Confidence            36899999999 888775 4665555567888877766544331110 0000    0001110110000010   11111


Q ss_pred             c--CCCCcEEEEECCCCHHHHHHHHHHhh--cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428           72 H--QERNHVVFQMGTSDAVRALTAAKMVC--KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT  147 (326)
Q Consensus        72 ~--~~~~p~~vQl~g~~~~~~~~aa~~~~--~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~  147 (326)
                      +  ..+.|+++||++++++++.++++.+.  .|+|+||||++||+.+.    .|..+..+++++.++++++++.+++||+
T Consensus        93 ~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~----g~~~~g~~~~~~~eii~~v~~~~~~pv~  168 (311)
T 1ep3_A           93 NENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKH----GGQAFGTDPEVAAALVKACKAVSKVPLY  168 (311)
T ss_dssp             HHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG----TTEEGGGCHHHHHHHHHHHHHHCSSCEE
T ss_pred             HhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCC----chhhhcCCHHHHHHHHHHHHHhcCCCEE
Confidence            2  22569999999999999999999998  58999999999998642    2556667999999999999999899999


Q ss_pred             EEecCCCChHHHHHHHHHHHHcCCcEEEEee---------cccC-------CCCCCcCC----HHHHHHHHHhcCCcEEE
Q 020428          148 CKIRLLKSSQDTVELARRIEKTGVSALAVHG---------RKVA-------DRPRDPAK----WGEIADIVAALSIPVIA  207 (326)
Q Consensus       148 vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~---------r~~~-------~~~~~~~~----~~~i~~i~~~~~iPVi~  207 (326)
                      +|++.+++  +..++++.++++|+|+|++++         ++..       +.++++..    ++.++++++.+++|||+
T Consensus       169 vk~~~~~~--~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia  246 (311)
T 1ep3_A          169 VKLSPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIG  246 (311)
T ss_dssp             EEECSCSS--CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEE
T ss_pred             EEECCChH--HHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEE
Confidence            99997653  457889999999999999943         3331       12345544    47888999989999999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +|||.|++|+.+++ ..|||+|++||+++.+|+++.+
T Consensus       247 ~GGI~~~~d~~~~l-~~GAd~V~vg~~~l~~p~~~~~  282 (311)
T 1ep3_A          247 MGGVANAQDVLEMY-MAGASAVAVGTANFADPFVCPK  282 (311)
T ss_dssp             CSSCCSHHHHHHHH-HHTCSEEEECTHHHHCTTHHHH
T ss_pred             ECCcCCHHHHHHHH-HcCCCEEEECHHHHcCcHHHHH
Confidence            99999999999999 5899999999999999998765

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.95  E-value=2.1e-27  Score=252.42  Aligned_cols=238  Identities=18%  Similarity=0.236  Sum_probs=178.9

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc--ccccccccc--------cCcccccccC-----Ccce
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL--KCERRVNEY--------IGSTDFVEKG-----TDSV   66 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~--~~~~~~~~~--------~~~~~~~~~~-----~~~~   66 (326)
                      +++||+++|||...++.+++..+...|.+++.++.++.+.-.  ...+..-..        .+...|++..     ....
T Consensus       541 ~~~nPv~lAa~~~~~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e~~~~~~~~~  620 (1025)
T 1gte_A          541 KFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAY  620 (1025)
T ss_dssp             EESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCHHH
T ss_pred             cccCcccccCCCCCCCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccccCCchhheeeeccccchhHHH
Confidence            578999999999989999999999999999998877754311  111110000        0000011110     0000


Q ss_pred             ----eeeccc-CCCCcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh
Q 020428           67 ----VFRTCH-QERNHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK  139 (326)
Q Consensus        67 ----~~~~~~-~~~~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~  139 (326)
                          +.+... ..+.|+++|+ +|++++++.++++++.+ |+|+|+||++||+. ...+++|++++++++++.+++++++
T Consensus       621 ~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~~~~~~iv~~v~  699 (1025)
T 1gte_A          621 WCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGMGLACGQDPELVRNICRWVR  699 (1025)
T ss_dssp             HHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC-----SBGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCcccccccCHHHHHHHHHHHH
Confidence                000011 1235899988 68899999999999976 99999999999998 6678899999999999999999999


Q ss_pred             hcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE----------------------eecccCCCCCCcCCH----HH
Q 020428          140 RNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV----------------------HGRKVADRPRDPAKW----GE  193 (326)
Q Consensus       140 ~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v----------------------h~r~~~~~~~~~~~~----~~  193 (326)
                      +.+++||++|++.+.  .+..++++.++++|+|+|++                      |+|+..+.+++++.|    +.
T Consensus       700 ~~~~~Pv~vK~~~~~--~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~  777 (1025)
T 1gte_A          700 QAVQIPFFAKLTPNV--TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRA  777 (1025)
T ss_dssp             HHCSSCEEEEECSCS--SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHH
T ss_pred             HhhCCceEEEeCCCh--HHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHH
Confidence            999999999998643  36788999999999999999                      566655666677775    68


Q ss_pred             HHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc-ccc
Q 020428          194 IADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS-IFS  243 (326)
Q Consensus       194 i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~-lf~  243 (326)
                      +.++++.+ ++|||++|||+|++|+.+++ ..|||+|||||+++.+|+ ++.
T Consensus       778 v~~v~~~~~~ipvi~~GGI~s~~da~~~l-~~Ga~~v~vg~~~l~~~~~~~~  828 (1025)
T 1gte_A          778 VTTIARALPGFPILATGGIDSAESGLQFL-HSGASVLQVCSAVQNQDFTVIQ  828 (1025)
T ss_dssp             HHHHHHHSTTCCEEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTSCTTHHH
T ss_pred             HHHHHHHcCCCCEEEecCcCCHHHHHHHH-HcCCCEEEEeeccccCCccHHH
Confidence            89999998 99999999999999999999 599999999999998444 443

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=99.94  E-value=1.6e-26  Score=218.95  Aligned_cols=240  Identities=12%  Similarity=0.072  Sum_probs=179.4

Q ss_pred             CCCCCceEEccccCC--------CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeeccc
Q 020428            1 MDYQNKLVLAPMVRV--------GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (326)
                      ++++|||++|||...        |+.......++.++|+++||.+.++.-....+   ...+.++-......+.+.+.+|
T Consensus        13 ~~lkNRiv~apm~~~~a~~dg~~t~~~~~~y~~rA~gGliite~~~V~~~g~~~~---~~~gi~~d~~i~~~k~l~~avh   89 (358)
T 4a3u_A           13 FTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEATGISQEGLGWP---YAPGIWSDAQVEAWLPITQAVH   89 (358)
T ss_dssp             EEESCSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSSSEEEEEEESSTTTCCST---TCCBCSSHHHHHHHHHHHHHHH
T ss_pred             EEECCceEEcccCCCccCCCCCCCHHHHHHHHHHcCCCEEEEeeeEECccccCCC---CCcccCchHhHHHHHHHHHHHH
Confidence            468999999999853        34555566666678999999887665332221   1222222100011222466678


Q ss_pred             CCCCcEEEEECCCC-----------------------------------------------HHHHHHHHHHhhc-CCCEE
Q 020428           73 QERNHVVFQMGTSD-----------------------------------------------AVRALTAAKMVCK-DVAAI  104 (326)
Q Consensus        73 ~~~~p~~vQl~g~~-----------------------------------------------~~~~~~aa~~~~~-~~d~i  104 (326)
                      +.+.++++||++..                                               .++|++||+++.+ |||+|
T Consensus        90 ~~G~~i~~QL~H~Gr~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGFDgV  169 (358)
T 4a3u_A           90 DAGGLIFAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDGV  169 (358)
T ss_dssp             HTTCCEEEEEECCGGGCCHHHHSSCCEESSCEECSSEEECSSSEEECCEEEECCGGGHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             hcCCceeeccccccccccccccccCCCCCcccccCCcccccCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence            88889999995311                                               2579999999987 99999


Q ss_pred             EEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC---------CChHHHHHHHHH
Q 020428          105 DINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL---------KSSQDTVELARR  165 (326)
Q Consensus       105 dlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g---------~~~~~~~e~a~~  165 (326)
                      |||++         +|..|.|+++||+++.++.+++.||+++||+++ .-+|.+|+...         .+.+....+++.
T Consensus       170 EIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~  249 (358)
T 4a3u_A          170 QIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKM  249 (358)
T ss_dssp             EEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHH
T ss_pred             eecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHh
Confidence            99987         899999999999999999999999999999998 34588888752         123456788999


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +++.|++.+.++.......+.......+.+++++.++.||++ ||+.|++++++++++..||.|.+||+++.||+|.++
T Consensus       250 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~~~~v~~-~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k  327 (358)
T 4a3u_A          250 LSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVL-NQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRR  327 (358)
T ss_dssp             HHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHHHCCSCEEE-ESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHH
T ss_pred             hhccCccccccccccccCcccccccHHHHHHHHHhcCCcEEE-eCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHH
Confidence            999999999998765544333222334567788877877775 667899999999976569999999999999999887

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.93  E-value=5.6e-26  Score=215.60  Aligned_cols=205  Identities=16%  Similarity=0.173  Sum_probs=162.7

Q ss_pred             CCCCceEEcccc--CCCC----HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMV--RVGT----LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~--g~t~----~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      +++.|+++|||+  ++++    .+++++|.++|+.+++|+|.+ ..+..                      +.. .. .+
T Consensus        78 ~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s-~~le~----------------------v~~-~~-~~  132 (368)
T 2nli_A           78 KIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG-ATFEE----------------------ISE-GL-NG  132 (368)
T ss_dssp             EESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCS-SCHHH----------------------HHH-HH-TT
T ss_pred             ecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHh-HHHHH----------------------HHH-hC-CC
Confidence            467899999999  7774    799999999999999999886 22211                      001 11 13


Q ss_pred             CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----------------cc-----ccccccc---c--C
Q 020428           76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----------------VS-----GGMGAAL---L--S  126 (326)
Q Consensus        76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----------------~~-----~~~G~~l---~--~  126 (326)
                      .|+.+||++ .|++...++++++.+ |++.|+||++||....                 ..     .+.|+.+   +  .
T Consensus       133 ~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~  212 (368)
T 2nli_A          133 GPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGAS  212 (368)
T ss_dssp             CCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTB
T ss_pred             CCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhcc
Confidence            489999987 788888999998876 9999999999998211                 11     3346554   3  3


Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      ++.+..++++++++.+++||++|.-      .+.+.++.+.++|+|+|+|++....+.+.+++.++.+.++++.+  ++|
T Consensus       213 d~~~~~~~i~~lr~~~~~PvivK~v------~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ip  286 (368)
T 2nli_A          213 KQKISPRDIEEIAGHSGLPVFVKGI------QHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVP  286 (368)
T ss_dssp             CSBCCHHHHHHHHHHSSSCEEEEEE------CSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSC
T ss_pred             CchhhHHHHHHHHHHcCCCEEEEcC------CCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCe
Confidence            7788888999999999999999963      23577899999999999997765556677889999999999988  699


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ||++|||+|++|+.+++ ..|||+|||||+++..
T Consensus       287 Via~GGI~~g~D~~kal-alGAd~V~iGr~~l~~  319 (368)
T 2nli_A          287 IVFDSGVRRGEHVAKAL-ASGADVVALGRPVLFG  319 (368)
T ss_dssp             EEECSSCCSHHHHHHHH-HTTCSEEEECHHHHHH
T ss_pred             EEEECCCCCHHHHHHHH-HcCCCEEEECHHHHHH
Confidence            99999999999999999 5999999999976643

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=99.92  E-value=5.1e-25  Score=210.45  Aligned_cols=205  Identities=18%  Similarity=0.194  Sum_probs=159.2

Q ss_pred             CCCCceEEccccCCCCHH-------HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCC
Q 020428            2 DYQNKLVLAPMVRVGTLP-------FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE   74 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~-------fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (326)
                      +++.|+++||| |+++..       +++.|.++|+.+++|+|.+ ..+..                      +... . .
T Consensus        92 ~l~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G~~~~~s~~~s-~~le~----------------------v~~~-~-~  145 (392)
T 2nzl_A           92 RVSMPICVGAT-AMQRMAHVDGELATVRACQSLGTGMMLSSWAT-SSIEE----------------------VAEA-G-P  145 (392)
T ss_dssp             EESSSEEECCC-SCGGGTSTTHHHHHHHHHHHHTCEEEECTTCS-SCHHH----------------------HHHH-C-T
T ss_pred             ecCCceEeccc-cccccccchHHHHHHHHHHHcCCCeeccchHH-HHHHH----------------------HHHh-c-C
Confidence            46789999999 777654       9999999999999999775 22211                      0011 1 2


Q ss_pred             CCcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcc---------------cc-----c------cc----cccc
Q 020428           75 RNHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKS---------------FS-----V------SG----GMGA  122 (326)
Q Consensus        75 ~~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~---------------~~-----~------~~----~~G~  122 (326)
                      +.|+.+||++ .|++...+.++++++ |++.++||++||..               ++     .      ..    +.|+
T Consensus       146 ~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~  225 (392)
T 2nzl_A          146 EALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS  225 (392)
T ss_dssp             TSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------
T ss_pred             CCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcc
Confidence            3589999987 788888899988876 99999999999985               22     0      00    1222


Q ss_pred             ---cccC---ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428          123 ---ALLS---KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       123 ---~l~~---~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                         .++.   +|++..+.++++++.+++||.+|.-      .+.+.|+.+.++|+|+|+|+++...+.+.+++.++.+.+
T Consensus       226 ~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv------~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~  299 (392)
T 2nzl_A          226 GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGI------LRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPE  299 (392)
T ss_dssp             CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEE------CCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHH
T ss_pred             hHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEec------CCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHH
Confidence               2444   7877888899999999999999963      125668999999999999987766667778899999999


Q ss_pred             HHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          197 IVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       197 i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +++.+  ++|||++|||+|++|+.+++ ..|||+||+||+++...
T Consensus       300 v~~av~~~ipVia~GGI~~g~Dv~kal-alGAd~V~iGr~~l~~~  343 (392)
T 2nzl_A          300 IVEAVEGKVEVFLDGGVRKGTDVLKAL-ALGAKAVFVGRPIVWGL  343 (392)
T ss_dssp             HHHHHTTSSEEEECSSCCSHHHHHHHH-HTTCSEEEECHHHHHHH
T ss_pred             HHHHcCCCCEEEEECCCCCHHHHHHHH-HhCCCeeEECHHHHHHH
Confidence            99988  59999999999999999999 59999999999777543

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.91  E-value=9.2e-24  Score=199.52  Aligned_cols=207  Identities=19%  Similarity=0.235  Sum_probs=149.8

Q ss_pred             CCCCceEEccccCCC-------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCC
Q 020428            2 DYQNKLVLAPMVRVG-------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE   74 (326)
Q Consensus         2 ~l~~~iilAPM~g~t-------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (326)
                      ++++|+++|||+|++       +.+++..|.++|++++++++.+.  +......     .+  |      + +.+. ...
T Consensus        53 ~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~--l~~~~~~-----~~--~------~-~~~~-~~~  115 (349)
T 1p0k_A           53 SSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA--LKDPSER-----LS--Y------E-IVRK-ENP  115 (349)
T ss_dssp             EESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT--TTCHHHH-----HH--H------H-HHHH-HCS
T ss_pred             ccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc--ccCcccc-----cc--e------e-hhhh-hCC
Confidence            468999999999999       78999999999999888887653  2110000     00  0      0 0111 123


Q ss_pred             CCcEEEEEC-CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHH--HHHHHHHHhhcccCcEEEEec
Q 020428           75 RNHVVFQMG-TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPEL--IHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        75 ~~p~~vQl~-g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~--~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      +.|+++|+. |.+++.+.++++.  .|+|+|+||++||+.....  .|     ++++  +.++++++++.+++||.+|+.
T Consensus       116 ~~pv~~~i~~~~~~~~~~~~~~~--~gad~i~i~~~~~~~~~~~--~~-----~~~~~~~~~~i~~vr~~~~~Pv~vK~~  186 (349)
T 1p0k_A          116 NGLIFANLGSEATAAQAKEAVEM--IGANALQIHLNVIQEIVMP--EG-----DRSFSGALKRIEQICSRVSVPVIVKEV  186 (349)
T ss_dssp             SSCEEEEEETTCCHHHHHHHHHH--TTCSEEEEEECTTTTC---------------CTTHHHHHHHHHHHCSSCEEEEEE
T ss_pred             CceeEEeecCCCCHHHHHHHHHh--cCCCeEEecccchhhhcCC--CC-----CcchHHHHHHHHHHHHHcCCCEEEEec
Confidence            469999998 7888877765443  2799999999999754322  11     4443  778899999988999999984


Q ss_pred             -CCCChHHHHHHHHHHHHcCCcEEEE--eecc--------cCC------CCCCcCCHHHHHHHHHhc-CCcEEEeCCCCC
Q 020428          152 -LLKSSQDTVELARRIEKTGVSALAV--HGRK--------VAD------RPRDPAKWGEIADIVAAL-SIPVIANGDVFE  213 (326)
Q Consensus       152 -~g~~~~~~~e~a~~l~~~G~d~i~v--h~r~--------~~~------~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s  213 (326)
                       .+.+    .+.++.+.++|+|+|++  ||++        +..      .+.+++.++.+.++++.+ ++|||++|||+|
T Consensus       187 ~~~~~----~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~  262 (349)
T 1p0k_A          187 GFGMS----KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQD  262 (349)
T ss_dssp             SSCCC----HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCS
T ss_pred             CCCCC----HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCC
Confidence             4444    46688999999999999  6664        211      345677889999999887 899999999999


Q ss_pred             HHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          214 YDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       214 ~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      ++|+.+++ ..|||+|+|||+++..+
T Consensus       263 ~~d~~k~l-~~GAd~V~iG~~~l~~~  287 (349)
T 1p0k_A          263 ALDVAKAI-ALGASCTGMAGHFLKAL  287 (349)
T ss_dssp             HHHHHHHH-HTTCSEEEECHHHHHHH
T ss_pred             HHHHHHHH-HcCCCEEEEcHHHHHHH
Confidence            99999999 58999999999888754

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=99.91  E-value=2.3e-24  Score=206.90  Aligned_cols=241  Identities=12%  Similarity=0.129  Sum_probs=167.6

Q ss_pred             CCCCCceEEccccCC--------C--CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcccccccCCcceee
Q 020428            1 MDYQNKLVLAPMVRV--------G--TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVF   68 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t--~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (326)
                      ++|+|||++|||...        +  +...+...+++  |+|+++||.+.++.-....+   ...+.++-......+.+.
T Consensus        26 l~lkNRiv~aPm~~~~a~~~g~v~~~d~~~~yy~~rA~GG~GLIite~~~V~~~g~~~~---~~~gi~~d~~i~~~k~l~  102 (400)
T 4gbu_A           26 NELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYD---NAPGVWSEEQMVEWTKIF  102 (400)
T ss_dssp             EEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEECSCEESSGGGCCCT---TSCBSSSHHHHHHHHHHH
T ss_pred             EEEcCcCEeCCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEcCeEECccccCCC---CCCccCCHHHHHHHHHHH
Confidence            468999999999853        2  23444555554  68999999987765432211   222222210001122246


Q ss_pred             ecccCCCCcEEEEECCCC--------------------------------------------------HHHHHHHHHHhh
Q 020428           69 RTCHQERNHVVFQMGTSD--------------------------------------------------AVRALTAAKMVC   98 (326)
Q Consensus        69 ~~~~~~~~p~~vQl~g~~--------------------------------------------------~~~~~~aa~~~~   98 (326)
                      +.+|+.+.++++||++..                                                  .++|++||++++
T Consensus       103 davH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~  182 (400)
T 4gbu_A          103 NAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSI  182 (400)
T ss_dssp             HHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESCSSCCSCHHHHHHHHHTTCCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCceEEeeeecCcccCccccccCCCcccCccccccCCCCcccccccCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence            677888899999995311                                                  157999999998


Q ss_pred             c-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC------CC------
Q 020428           99 K-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL------KS------  155 (326)
Q Consensus        99 ~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g------~~------  155 (326)
                      + |||+||||++         +|..|.|+|.||+++.++.+++.||+++||+++ .-||.+|+...      .+      
T Consensus       183 ~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~~~~~~~~  262 (400)
T 4gbu_A          183 AAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGI  262 (400)
T ss_dssp             HTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTH
T ss_pred             hcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCccchhhh
Confidence            8 9999999987         899999999999999999999999999999998 34899998751      11      


Q ss_pred             hHHHHHHHHHHHHcC-----CcEEEEeecccCCC--CCCc--CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428          156 SQDTVELARRIEKTG-----VSALAVHGRKVADR--PRDP--AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G-----~d~i~vh~r~~~~~--~~~~--~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                      ..+..+++..++..+     .+.+++........  ..+.  ........+++.+++|||++|+|.+.+++.+.+...+|
T Consensus       263 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~~~~~~~~~~~~~~~~a  342 (400)
T 4gbu_A          263 VAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKR  342 (400)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCCSTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhhHHHHHHHHHhCCCEEEeCCCCChHHHHHHHHcCCC
Confidence            234566666666543     44555543221111  0111  11112234677789999999999987776666656789


Q ss_pred             cEEEeccchhcCcccccc
Q 020428          227 SSVMAARGALWNASIFSS  244 (326)
Q Consensus       227 d~VmiGr~~l~~P~lf~~  244 (326)
                      |.|.+||+++.||.|.++
T Consensus       343 DlV~~gR~~iadPdl~~k  360 (400)
T 4gbu_A          343 TLIGYGRFFISNPDLVDR  360 (400)
T ss_dssp             EEEECCHHHHHCTTHHHH
T ss_pred             eEhHHHHHHHHCcHHHHH
Confidence            999999999999999887

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.91  E-value=1.2e-23  Score=199.95  Aligned_cols=203  Identities=20%  Similarity=0.211  Sum_probs=157.5

Q ss_pred             CCCCceEEccccCCCCHH-------HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCC
Q 020428            2 DYQNKLVLAPMVRVGTLP-------FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE   74 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~-------fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (326)
                      +++.|+++||| |+++.+       +++.|.++|+.+++++|.+.. +..                      +....+  
T Consensus        69 ~~~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~-iee----------------------v~~~~~--  122 (370)
T 1gox_A           69 KISMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSSWATSS-VEE----------------------VASTGP--  122 (370)
T ss_dssp             EESSSEEECCC-SCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC-HHH----------------------HHTTCC--
T ss_pred             ccCCceeEccc-chhhhccchHHHHHHHHHHHcCCCeeccCCCCCC-HHH----------------------HHhhcC--
Confidence            46789999999 888776       999999999999999877531 100                      011111  


Q ss_pred             CCcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCcc---------------c-----ccc-------ccccccc-
Q 020428           75 RNHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKS---------------F-----SVS-------GGMGAAL-  124 (326)
Q Consensus        75 ~~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~---------------~-----~~~-------~~~G~~l-  124 (326)
                       .|..+||+ +.|++...+.++++.+ |++.|+||++||..               .     +..       ...|+.+ 
T Consensus       123 -~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  201 (370)
T 1gox_A          123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLS  201 (370)
T ss_dssp             -CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HH
T ss_pred             -CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHH
Confidence             47999995 8899888888888876 99999999999975               1     111       2334444 


Q ss_pred             -----cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH
Q 020428          125 -----LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA  199 (326)
Q Consensus       125 -----~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~  199 (326)
                           +.+|.+..+.++++++.+++||.+|...      +.+.++.+.++|+|+|+|.+....+.+.++++++.+.++++
T Consensus       202 ~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~------~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~  275 (370)
T 1gox_A          202 SYVAGQIDRSLSWKDVAWLQTITSLPILVKGVI------TAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVK  275 (370)
T ss_dssp             HHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCC------SHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHH
T ss_pred             HHHHhhcCccchHHHHHHHHHHhCCCEEEEecC------CHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHH
Confidence                 4567766678999999999999999973      24678999999999999954333344556788999999999


Q ss_pred             hc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          200 AL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       200 ~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      .+  ++|||++|||+|++|+.+++ ..|||+|||||+++..
T Consensus       276 ~~~~~ipvia~GGI~~~~D~~k~l-~~GAdaV~iGr~~l~~  315 (370)
T 1gox_A          276 AAQGRIPVFLDGGVRRGTDVFKAL-ALGAAGVFIGRPVVFS  315 (370)
T ss_dssp             HTTTSSCEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHH
T ss_pred             HhCCCCEEEEECCCCCHHHHHHHH-HcCCCEEeecHHHHHH
Confidence            88  79999999999999999999 5899999999988754

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=99.90  E-value=1.1e-22  Score=192.41  Aligned_cols=238  Identities=13%  Similarity=0.058  Sum_probs=157.7

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccc-ccccc----ccccCcccccccCCc---ceeeeccc
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK-CERRV----NEYIGSTDFVEKGTD---SVVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~   72 (326)
                      ++++||+++|.-.--.+..+-..+...|+|.+.+..++.++-.. ..+..    ...++..-|-+....   +.+.....
T Consensus        44 l~f~NPvglAaG~~~~~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~~~~~~~~~~~  123 (354)
T 3tjx_A           44 NTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHD  123 (354)
T ss_dssp             EEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHHHTCC
T ss_pred             EEcCCCcEEccCCCCCCHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHHHHHHHHHhhc
Confidence            46899999995211245666666777899988888777654211 11110    001111111111100   00111222


Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHhh----cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMVC----KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~~----~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      ....|+++||+|++++++.+.++.+.    .++|.|+||++||+.+     .+..+..+++.+.++++++++.+..|+.+
T Consensus       124 ~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-----g~~~l~~~~~~~~~i~~~v~~~~~~pv~v  198 (354)
T 3tjx_A          124 YGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-----GKPQVAYDFDAMRQCLTAVSEVYPHSFGV  198 (354)
T ss_dssp             TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------CTTSHHHHHHHHHHHHHHCCSCEEE
T ss_pred             cCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc-----chhhhccCHHHHHHHHHHHHHHhhccccc
Confidence            33469999999999988877776654    3689999999999874     46678889999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcC-CcEEEEe----------ec---------ccCCCCCCcCCHHH----HHHHHHhc-CC
Q 020428          149 KIRLLKSSQDTVELARRIEKTG-VSALAVH----------GR---------KVADRPRDPAKWGE----IADIVAAL-SI  203 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G-~d~i~vh----------~r---------~~~~~~~~~~~~~~----i~~i~~~~-~i  203 (326)
                      |++..++.......+..+.+.+ ++.++..          .+         +..+.+++++.++.    +.++++.+ ++
T Consensus       199 K~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~  278 (354)
T 3tjx_A          199 KMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGK  278 (354)
T ss_dssp             EECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTS
T ss_pred             ccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCC
Confidence            9999887766667777776654 3444321          11         11234567777765    44555554 79


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh-cCcccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGAL-WNASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l-~~P~lf~~  244 (326)
                      |||++|||.|++|+.+++ ..|||+||||||++ .+|+++.+
T Consensus       279 pIIg~GGI~s~~Da~e~i-~aGAs~Vqv~Ta~~y~GP~~~~~  319 (354)
T 3tjx_A          279 LIFGCGGVYTGEDAFLHV-LAGASMVQVGTALQEEGPSIFER  319 (354)
T ss_dssp             EEEEESSCCSHHHHHHHH-HHTEEEEEECHHHHHHCTTHHHH
T ss_pred             cEEEeCCcCCHHHHHHHH-HcCCCEEEEChhhhhcCchHHHH
Confidence            999999999999999999 69999999999975 68999876

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.89  E-value=7.9e-23  Score=201.34  Aligned_cols=207  Identities=17%  Similarity=0.137  Sum_probs=160.0

Q ss_pred             CCCCceEEccccC---C----CCHHHHHHHHH--cCCCeEEeCceecc-cccccccccccccCcccccccCCcceeeecc
Q 020428            2 DYQNKLVLAPMVR---V----GTLPFRLLAAQ--YGADITYGEEIIDH-KLLKCERRVNEYIGSTDFVEKGTDSVVFRTC   71 (326)
Q Consensus         2 ~l~~~iilAPM~g---~----t~~~fr~~~~~--~G~~l~~te~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (326)
                      +++.|+++|||++   .    ++.++++.|++  +|+.+++++|.+.. +.+                        ....
T Consensus       187 ~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v------------------------~~~~  242 (511)
T 1kbi_A          187 HVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI------------------------IEAA  242 (511)
T ss_dssp             EESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHH------------------------HHTC
T ss_pred             cCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHH------------------------Hhhc
Confidence            4678999999997   3    46899999999  99999999984321 111                        0111


Q ss_pred             cCCCCcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccc----ccc------------------c-ccc-cccc
Q 020428           72 HQERNHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSF----SVS------------------G-GMG-AALL  125 (326)
Q Consensus        72 ~~~~~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~----~~~------------------~-~~G-~~l~  125 (326)
                      +....|..+||+ +.|++...+++++++. |+++|.|+++||+.-    ..+                  + +.| +.++
T Consensus       243 ~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~  322 (511)
T 1kbi_A          243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRAL  322 (511)
T ss_dssp             CCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGC
T ss_pred             CCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHH
Confidence            112348999997 8899999999999987 999999999999821    111                  1 111 1223


Q ss_pred             ---CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-
Q 020428          126 ---SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-  201 (326)
Q Consensus       126 ---~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-  201 (326)
                         .+|.+..++++++++.+++||++|.-.      ..+.|+.++++|+|+|+|++....+.+.+++.++.+.++++.+ 
T Consensus       323 ~~~~d~~~~~~~i~~lr~~~~~PvivKgv~------~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~  396 (511)
T 1kbi_A          323 SKFIDPSLTWKDIEELKKKTKLPIVIKGVQ------RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILE  396 (511)
T ss_dssp             BTTBCTTCCHHHHHHHHHHCSSCEEEEEEC------SHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHH
T ss_pred             hhccChHhHHHHHHHHHHHhCCcEEEEeCC------CHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHH
Confidence               578877888999999999999999532      1567899999999999996554445556677899999998887 


Q ss_pred             ------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          202 ------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       202 ------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                            ++|||++|||+|++|+.+++ ..|||+|||||+++...
T Consensus       397 ~~~~~~~ipVia~GGI~~g~Dv~kaL-alGAdaV~iGr~~l~~~  439 (511)
T 1kbi_A          397 QRNLKDKLEVFVDGGVRRGTDVLKAL-CLGAKGVGLGRPFLYAN  439 (511)
T ss_dssp             TTTCBTTBEEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHHH
T ss_pred             hhccCCCcEEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHHHH
Confidence                  79999999999999999999 58999999999777543

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=99.89  E-value=6.7e-23  Score=192.33  Aligned_cols=190  Identities=16%  Similarity=0.173  Sum_probs=148.8

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .+++|+++|||.++|+..++..+.++|+ |++.+++++++.+....+..                   +  ...+.|+.+
T Consensus        10 ~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i-------------------~--~~~~~p~gv   68 (332)
T 2z6i_A           10 KIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKI-------------------K--SLTDKPFGV   68 (332)
T ss_dssp             TCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHH-------------------H--HHCCSCEEE
T ss_pred             CCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHH-------------------H--HhcCCCEEE
Confidence            5789999999999999999999999986 99999887766543211100                   0  112358999


Q ss_pred             EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHH
Q 020428           81 QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT  159 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~  159 (326)
                      |++..+++ +.+.++.+.+ |+|+|++|+|||..                    +++.+++. ++||.+|+.       +
T Consensus        69 nl~~~~~~-~~~~~~~a~~~g~d~V~~~~g~p~~--------------------~i~~l~~~-g~~v~~~v~-------~  119 (332)
T 2z6i_A           69 NIMLLSPF-VEDIVDLVIEEGVKVVTTGAGNPSK--------------------YMERFHEA-GIIVIPVVP-------S  119 (332)
T ss_dssp             EECTTSTT-HHHHHHHHHHTTCSEEEECSSCGGG--------------------THHHHHHT-TCEEEEEES-------S
T ss_pred             EecCCCCC-HHHHHHHHHHCCCCEEEECCCChHH--------------------HHHHHHHc-CCeEEEEeC-------C
Confidence            99986654 4555555555 99999999999832                    35666654 899999882       3


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      .+.++.+++.|+|+|.++|+...+......+|++++++++.+++|||++|||.|++++.+++ ..|||+|++||+++.+|
T Consensus       120 ~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al-~~GAdgV~vGs~~l~~~  198 (332)
T 2z6i_A          120 VALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGF-MLGAEAVQVGTRFVVAK  198 (332)
T ss_dssp             HHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHTBT
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEecHHHhcCc
Confidence            56788899999999999987543222235689999999999999999999999999999999 48999999999999998


Q ss_pred             ccc
Q 020428          240 SIF  242 (326)
Q Consensus       240 ~lf  242 (326)
                      ...
T Consensus       199 e~~  201 (332)
T 2z6i_A          199 ESN  201 (332)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            653

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.86  E-value=1.4e-21  Score=183.27  Aligned_cols=206  Identities=19%  Similarity=0.184  Sum_probs=143.9

Q ss_pred             CCCCceEEccccCCCC------HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVGT------LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~------~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++++|+++|||++.++      .+++.+|+++|+.+++++|.+.  +.....        ..+.     +  ++ ..+.+
T Consensus        56 ~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~--le~~~~--------~~~~-----q--l~-~~~~d  117 (332)
T 1vcf_A           56 TLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL--LERPEA--------LRSF-----R--VR-KVAPK  117 (332)
T ss_dssp             EESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH--HHCTTT--------HHHH-----C--CT-TTCSS
T ss_pred             ccCCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCchhc--ccCCCc--------cceE-----E--ee-ccCCC
Confidence            4678999999999875      3899999999999999998875  321100        0000     0  01 11224


Q ss_pred             CcEE-----EEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE-
Q 020428           76 NHVV-----FQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK-  149 (326)
Q Consensus        76 ~p~~-----vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK-  149 (326)
                      .|++     .|+++.+++.+.++++.+  +++++.+|..+..... .  .|..   +.+.+.++++++++ +++||++| 
T Consensus       118 ~pv~~~~~~~q~~~~~~~~~~~a~~~~--~~~a~~i~~n~~~~~~-~--~~~~---~~~~~~~~i~~vr~-~~~Pv~vK~  188 (332)
T 1vcf_A          118 ALLIANLGLAQLRRYGRDDLLRLVEML--EADALAFHVNPLQEAV-Q--RGDT---DFRGLVERLAELLP-LPFPVMVKE  188 (332)
T ss_dssp             SCEEEEEEGGGGGTCCHHHHHHHHHHH--TCSEEEEECCHHHHHH-T--TSCC---CCTTHHHHHHHHCS-CSSCEEEEC
T ss_pred             ceeecccChhhhhccChHHHHHHHhhc--CCCceeeccchHHHHh-c--CCCc---cHHHHHHHHHHHHc-CCCCEEEEe
Confidence            5776     566778899988887765  4666555543321111 1  1111   11236788999999 99999999 


Q ss_pred             ecCCCChHHHHHHHHHHHHcCCcEEEE--eecc--------cCC--------CCCCcCCHHHHHHHHHhc-CCcEEEeCC
Q 020428          150 IRLLKSSQDTVELARRIEKTGVSALAV--HGRK--------VAD--------RPRDPAKWGEIADIVAAL-SIPVIANGD  210 (326)
Q Consensus       150 ~r~g~~~~~~~e~a~~l~~~G~d~i~v--h~r~--------~~~--------~~~~~~~~~~i~~i~~~~-~iPVi~nGg  210 (326)
                      +..|.+.    +.++.++++|+|+|+|  ||++        +.+        .+.+++.++.+.++++.+ ++|||++||
T Consensus       189 v~~g~~~----e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GG  264 (332)
T 1vcf_A          189 VGHGLSR----EAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGG  264 (332)
T ss_dssp             SSSCCCH----HHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESS
T ss_pred             cCCCCCH----HHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECC
Confidence            5444443    4578999999999999  5554        221        345677899999999998 899999999


Q ss_pred             CCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          211 VFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      |+|++|+.+++. .|||+||+||+++..+
T Consensus       265 I~~~~d~~kal~-~GAd~V~igr~~l~~~  292 (332)
T 1vcf_A          265 VYTGTDGAKALA-LGADLLAVARPLLRPA  292 (332)
T ss_dssp             CCSHHHHHHHHH-HTCSEEEECGGGHHHH
T ss_pred             CCCHHHHHHHHH-hCCChHhhhHHHHHHH
Confidence            999999999994 8999999999988655

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=99.85  E-value=1.4e-20  Score=176.11  Aligned_cols=189  Identities=17%  Similarity=0.223  Sum_probs=143.7

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++.||++|||+++|+..++..+.+.|+ +++.+.+++++.+....+.                     .....+.|+.+
T Consensus        24 ~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~---------------------i~~~~~~p~gV   82 (326)
T 3bo9_A           24 EIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISE---------------------LRQKTDKPFGV   82 (326)
T ss_dssp             TCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHH---------------------HHTTCSSCEEE
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHH---------------------HHHhcCCCEEE
Confidence            5789999999999999999999999986 8888877766554221110                     01112358999


Q ss_pred             EECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHH
Q 020428           81 QMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDT  159 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~  159 (326)
                      |++..+++ +.+.++.+. .++|.|.+++|||..                    +++.+++. ++++.+++.       +
T Consensus        83 nl~~~~~~-~~~~~~~~~~~g~d~V~l~~g~p~~--------------------~~~~l~~~-g~~v~~~v~-------s  133 (326)
T 3bo9_A           83 NIILVSPW-ADDLVKVCIEEKVPVVTFGAGNPTK--------------------YIRELKEN-GTKVIPVVA-------S  133 (326)
T ss_dssp             EEETTSTT-HHHHHHHHHHTTCSEEEEESSCCHH--------------------HHHHHHHT-TCEEEEEES-------S
T ss_pred             EEeccCCC-HHHHHHHHHHCCCCEEEECCCCcHH--------------------HHHHHHHc-CCcEEEEcC-------C
Confidence            99886553 233334443 489999999998822                    24445443 788888773       3


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      .+.++.+.+.|+|+|.++++...+......+|+.++++++.+++|||++|||.|++++.+++ ..||++|++||+++..+
T Consensus       134 ~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al-~~GA~gV~vGs~~~~~~  212 (326)
T 3bo9_A          134 DSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAF-ALGAEAVQMGTRFVASV  212 (326)
T ss_dssp             HHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHTBS
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHH-HhCCCEEEechHHHcCc
Confidence            56678889999999999998655432235689999999999999999999999999999999 58999999999999877


Q ss_pred             cc
Q 020428          240 SI  241 (326)
Q Consensus       240 ~l  241 (326)
                      ..
T Consensus       213 e~  214 (326)
T 3bo9_A          213 ES  214 (326)
T ss_dssp             SC
T ss_pred             cc
Confidence            64

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.84  E-value=2.5e-20  Score=177.67  Aligned_cols=202  Identities=16%  Similarity=0.119  Sum_probs=150.6

Q ss_pred             CCCCceEEccccC--C----CCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVR--V----GTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g--~----t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++++|+++|||++  .    ++.++++.|.++|++++.++ .+..++..                      +.   ...+
T Consensus        70 ~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss-~s~~~le~----------------------i~---~~~~  123 (380)
T 1p4c_A           70 RQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLST-ASNMSIED----------------------LA---RQCD  123 (380)
T ss_dssp             EESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECT-TCSSCHHH----------------------HH---HHCC
T ss_pred             ecCCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCc-cccCCHHH----------------------HH---hccC
Confidence            4788999999976  5    67899999999999998886 33322211                      00   0113


Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEE--------------ccCCCccc---cc--------c--ccccccc---
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDI--------------NMGCPKSF---SV--------S--GGMGAAL---  124 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idl--------------N~gcP~~~---~~--------~--~~~G~~l---  124 (326)
                      .|..+||.....+...+..+++.+ |+..+.|              |.||+.+.   ..        +  ...+.++   
T Consensus       124 ~~~~fQly~~~~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~  203 (380)
T 1p4c_A          124 GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAAL  203 (380)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHH
T ss_pred             CCeEEEEEechHHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHH
Confidence            478999975445555566666655 8876654              66885431   11        0  1112222   


Q ss_pred             cC---ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE--eecccCCCCCCcCCHHHHHHHHH
Q 020428          125 LS---KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV--HGRKVADRPRDPAKWGEIADIVA  199 (326)
Q Consensus       125 ~~---~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v--h~r~~~~~~~~~~~~~~i~~i~~  199 (326)
                      +.   +|++..++++++++.+++||.+|.-      .+.+.++.+.++|+|+|+|  ||++  +.+.++++++.+.++++
T Consensus       204 ~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv------~t~e~a~~a~~aGad~I~vs~~gg~--~~d~~~~~~~~l~~v~~  275 (380)
T 1p4c_A          204 MSRQMDASFNWEALRWLRDLWPHKLLVKGL------LSAEDADRCIAEGADGVILSNHGGR--QLDCAISPMEVLAQSVA  275 (380)
T ss_dssp             TSSCCCTTCCHHHHHHHHHHCCSEEEEEEE------CCHHHHHHHHHTTCSEEEECCGGGT--SCTTCCCGGGTHHHHHH
T ss_pred             HHhhcCccccHHHHHHHHHhcCCCEEEEec------CcHHHHHHHHHcCCCEEEEcCCCCC--cCCCCcCHHHHHHHHHH
Confidence            22   7888889999999999999999952      3456799999999999999  5543  44557788999999999


Q ss_pred             hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          200 ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       200 ~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      .+++|||++|||++++|+.+++ ..|||+||+||+++..
T Consensus       276 ~~~~pVia~GGI~~~~dv~kal-~~GAdaV~iGr~~l~~  313 (380)
T 1p4c_A          276 KTGKPVLIDSGFRRGSDIVKAL-ALGAEAVLLGRATLYG  313 (380)
T ss_dssp             HHCSCEEECSSCCSHHHHHHHH-HTTCSCEEESHHHHHH
T ss_pred             HcCCeEEEECCCCCHHHHHHHH-HhCCcHhhehHHHHHH
Confidence            9999999999999999999999 5899999999999864

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=99.82  E-value=1.2e-19  Score=169.79  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=140.9

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCcee-cccccccccccccccCcccccccCCcceeeecccCCCCcEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEII-DHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVV   79 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   79 (326)
                      .++.||++|||+|+|+..++..+.+.|+ +++.+++.+ ++.+....+                     +.....+.|+.
T Consensus        13 ~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~---------------------~i~~~~~~p~~   71 (328)
T 2gjl_A           13 GVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIA---------------------RCRELTDRPFG   71 (328)
T ss_dssp             TCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHH---------------------HHHHHCSSCCE
T ss_pred             CCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHH---------------------HHHHhcCCCeE
Confidence            5688999999999999999999999985 888776544 333221000                     00011235899


Q ss_pred             EEECCC----CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           80 FQMGTS----DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        80 vQl~g~----~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +|++.+    +++ +.+.++.+.+ ++|.|.+|+|||.                    ++++.+++. ++|+..++.   
T Consensus        72 v~l~v~~~~~~~~-~~~~~~~~~~~g~d~V~~~~g~p~--------------------~~~~~l~~~-gi~vi~~v~---  126 (328)
T 2gjl_A           72 VNLTLLPTQKPVP-YAEYRAAIIEAGIRVVETAGNDPG--------------------EHIAEFRRH-GVKVIHKCT---  126 (328)
T ss_dssp             EEEEECCCSSCCC-HHHHHHHHHHTTCCEEEEEESCCH--------------------HHHHHHHHT-TCEEEEEES---
T ss_pred             EEEeccccccCcc-HHHHHHHHHhcCCCEEEEcCCCcH--------------------HHHHHHHHc-CCCEEeeCC---
Confidence            999876    332 4444555444 8999999998871                    345566655 788887763   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCC--CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPR--DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                          +.+.++.+.+.|+|+|.++|++..+...  ...+|+.++++++.+++||+++|||.+++++.++++ .|||+|++|
T Consensus       127 ----t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~-~GAdgV~vG  201 (328)
T 2gjl_A          127 ----AVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALA-LGADAINMG  201 (328)
T ss_dssp             ----SHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCSEEEES
T ss_pred             ----CHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEC
Confidence                2456778899999999999887643211  246899999999999999999999999999999994 899999999


Q ss_pred             cchhcCcc
Q 020428          233 RGALWNAS  240 (326)
Q Consensus       233 r~~l~~P~  240 (326)
                      |+++..|.
T Consensus       202 s~~~~~~e  209 (328)
T 2gjl_A          202 TRFLATRE  209 (328)
T ss_dssp             HHHHTSSS
T ss_pred             HHHHcCcc
Confidence            99999886

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=99.82  E-value=1.3e-19  Score=172.21  Aligned_cols=191  Identities=17%  Similarity=0.200  Sum_probs=142.4

Q ss_pred             CCceEEccccC-CCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            4 QNKLVLAPMVR-VGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         4 ~~~iilAPM~g-~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      +.||++|||++ +|+..++..+.+.|+ |++.+++++++.+....+..                     ......|+.||
T Consensus        10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~---------------------~~~~~~p~gVn   68 (369)
T 3bw2_A           10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRL---------------------RGLTGRPFGVN   68 (369)
T ss_dssp             SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHH---------------------HHHCCSCEEEE
T ss_pred             cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHH---------------------HHhCCCCeEEE
Confidence            77999999995 999999999999986 88988988887664321110                     01112488999


Q ss_pred             ECCCCHH----------------------------------HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccC
Q 020428           82 MGTSDAV----------------------------------RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLS  126 (326)
Q Consensus        82 l~g~~~~----------------------------------~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~  126 (326)
                      ++...+.                                  .+.+.++.+.+ +++.|.+++|||..             
T Consensus        69 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~-------------  135 (369)
T 3bw2_A           69 VFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDR-------------  135 (369)
T ss_dssp             EECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCH-------------
T ss_pred             EecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcH-------------
Confidence            8765431                                  12344455544 89999999999842             


Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC---------C--cCCHHHHH
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR---------D--PAKWGEIA  195 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~---------~--~~~~~~i~  195 (326)
                            ++++.+++. +++|.+++.       +.+.++.+++.|+|+|.+++++..+...         +  ...|+.++
T Consensus       136 ------~~i~~~~~~-g~~v~~~v~-------t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~  201 (369)
T 3bw2_A          136 ------EVIARLRRA-GTLTLVTAT-------TPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLA  201 (369)
T ss_dssp             ------HHHHHHHHT-TCEEEEEES-------SHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHH
T ss_pred             ------HHHHHHHHC-CCeEEEECC-------CHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHH
Confidence                  345555553 788888773       2456888999999999998865421100         0  12389999


Q ss_pred             HHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          196 DIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       196 ~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      ++++.+++|||+.|||.|++++.+++ ..|||+|++||+++.+|+...
T Consensus       202 ~i~~~~~iPViaaGGI~~~~~~~~~l-~~GAd~V~vGs~~~~~~e~~~  248 (369)
T 3bw2_A          202 QVREAVDIPVVAAGGIMRGGQIAAVL-AAGADAAQLGTAFLATDESGA  248 (369)
T ss_dssp             HHHHHCSSCEEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTSTTCCC
T ss_pred             HHHHhcCceEEEECCCCCHHHHHHHH-HcCCCEEEEChHHhCCcccCc
Confidence            99999999999999999999999999 589999999999999988744

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=99.81  E-value=1.4e-19  Score=169.92  Aligned_cols=191  Identities=17%  Similarity=0.136  Sum_probs=138.5

Q ss_pred             CCCCceEEccccCCCCHHHHHH-HHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLL-AAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~-~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      ++++|+++|||+++|+..|+.. ++..|.+++.+++...  .             .++         ++...+.+.|+.+
T Consensus        44 ~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~--~-------------~~~---------i~~~~~~g~~v~v   99 (336)
T 1ypf_A           44 KFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEK--R-------------ISF---------IRDMQSRGLIASI   99 (336)
T ss_dssp             EESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGG--H-------------HHH---------HHHHHHTTCCCEE
T ss_pred             EecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHH--H-------------HHH---------HHHHHhcCCeEEE
Confidence            4789999999999999999765 5445678888765421  0             001         1111223447899


Q ss_pred             EECCCCHHHHHHHHHHhhcC--CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428           81 QMGTSDAVRALTAAKMVCKD--VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD  158 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~--~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~  158 (326)
                      |+ |.+++.+..+......+  ++.|++|++.          |     ++....++++++++.++.|+.+|-..     .
T Consensus       100 ~~-g~~~~~~~~a~~~~~~g~~~~~i~i~~~~----------G-----~~~~~~~~i~~lr~~~~~~~vi~G~v-----~  158 (336)
T 1ypf_A          100 SV-GVKEDEYEFVQQLAAEHLTPEYITIDIAH----------G-----HSNAVINMIQHIKKHLPESFVIAGNV-----G  158 (336)
T ss_dssp             EE-CCSHHHHHHHHHHHHTTCCCSEEEEECSS----------C-----CSHHHHHHHHHHHHHCTTSEEEEEEE-----C
T ss_pred             eC-CCCHHHHHHHHHHHhcCCCCCEEEEECCC----------C-----CcHHHHHHHHHHHHhCCCCEEEECCc-----C
Confidence            96 67777776655555447  8999999742          2     67788899999999985444444211     2


Q ss_pred             HHHHHHHHHHcCCcEEEE--eeccc----CCCCCCcC--CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          159 TVELARRIEKTGVSALAV--HGRKV----ADRPRDPA--KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~v--h~r~~----~~~~~~~~--~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +.+.|+.+.++|+|+|++  |+++.    ...+.+.+  .++.+.++++.+++|||++|||+|++|+.+++ ..|||+||
T Consensus       159 s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kal-alGAdaV~  237 (336)
T 1ypf_A          159 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSI-RFGATMVM  237 (336)
T ss_dssp             SHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHH-HTTCSEEE
T ss_pred             CHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEE
Confidence            357899999999999999  54321    11122333  68899999999999999999999999999999 58999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +||+++..
T Consensus       238 iGr~~l~t  245 (336)
T 1ypf_A          238 IGSLFAGH  245 (336)
T ss_dssp             ESGGGTTC
T ss_pred             eChhhhcc
Confidence            99999953

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=99.79  E-value=4.3e-19  Score=157.49  Aligned_cols=182  Identities=13%  Similarity=0.125  Sum_probs=131.1

Q ss_pred             EEccccCCCCHHHHHHHH---HcCCCeE--EeCceec-ccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            8 VLAPMVRVGTLPFRLLAA---QYGADIT--YGEEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         8 ilAPM~g~t~~~fr~~~~---~~G~~l~--~te~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      .|.|+  .|+.+||.+|+   +||++.+  +++|+.. .....       .           .+ +....   +-|+++|
T Consensus        12 ~l~p~--~t~~~i~~l~~~a~~~g~~~v~v~~~~v~~~~~~l~-------~-----------v~-v~~v~---~~P~g~~   67 (225)
T 1mzh_A           12 ALKPH--LSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAK-------K-----------VK-VCCVI---GFPLGLN   67 (225)
T ss_dssp             ECCTT--CCHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHCS-------S-----------SE-EEEEE---STTTCCS
T ss_pred             ccCCC--CCHHHHHHHHHHHHHhCCeEEEECHHHHHHHHHHhc-------C-----------Cc-eeeEe---cCCCCcc
Confidence            47787  58999999999   6899874  4555543 11110       0           01 11111   2356666


Q ss_pred             ECCCCHHHHHHHHHHhhcCCCEEE--EccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe---cCCCCh
Q 020428           82 MGTSDAVRALTAAKMVCKDVAAID--INMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI---RLLKSS  156 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~~~d~id--lN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~---r~g~~~  156 (326)
                      ++++.+....   +.+..|+|+||  +|+||-    + .       .+++.+.+.++++++.++ |+.+|+   +.+++.
T Consensus        68 ~~~~k~~~~~---~A~~~Gad~Id~viN~g~~----~-~-------~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~  131 (225)
T 1mzh_A           68 KTSVKVKEAV---EAVRDGAQELDIVWNLSAF----K-S-------EKYDFVVEELKEIFRETP-SAVHKVIVETPYLNE  131 (225)
T ss_dssp             CHHHHHHHHH---HHHHTTCSEEEEECCHHHH----H-T-------TCHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCH
T ss_pred             chhhhHHHHH---HHHHcCCCEEEEEecHHHH----h-c-------CChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCH
Confidence            5544444332   22335999999  799981    1 1       245677788999999988 999999   667888


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ++..++++.++++|+|+|    ++..+.+.+.++|+.++.+++.+  ++||+++|||+|++|+.+++ .+|||.|.++++
T Consensus       132 ~~~~~~a~~a~eaGad~I----~tstg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l-~aGA~~iG~s~~  206 (225)
T 1mzh_A          132 EEIKKAVEICIEAGADFI----KTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMI-EAGADRIGTSSG  206 (225)
T ss_dssp             HHHHHHHHHHHHHTCSEE----ECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEESCH
T ss_pred             HHHHHHHHHHHHhCCCEE----EECCCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHH-HhCchHHHHccH
Confidence            889999999999999999    22224445678999999999987  79999999999999999999 599997666654

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=99.79  E-value=5.5e-19  Score=167.22  Aligned_cols=206  Identities=15%  Similarity=0.150  Sum_probs=142.0

Q ss_pred             CCCCceEEccccCCCCHH------HHHHHHHcCCCeEEeCceec--ccccccccccccccCcccccccCCcceeeecccC
Q 020428            2 DYQNKLVLAPMVRVGTLP------FRLLAAQYGADITYGEEIID--HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ   73 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~------fr~~~~~~G~~l~~te~i~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (326)
                      +++.|+++|||.|.|+.+      ++.+|+++|+++..++|..+  ++.....           |      +.+.+..+ 
T Consensus        57 ~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s-----------~------~~vr~~ap-  118 (368)
T 3vkj_A           57 EISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARES-----------F------AIVRKVAP-  118 (368)
T ss_dssp             EESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHH-----------H------HHHHHHCS-
T ss_pred             eccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhh-----------H------HHHHHhCc-
Confidence            468899999999999877      59999999999999998654  2222111           0      00001112 


Q ss_pred             CCCcEEEEEC-----C-CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChH-HHHHHHHHHhhcccCcE
Q 020428           74 ERNHVVFQMG-----T-SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPE-LIHDILTMLKRNLDVPV  146 (326)
Q Consensus        74 ~~~p~~vQl~-----g-~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~-~~~~iv~~v~~~~~~pv  146 (326)
                       ..|++.+++     + .+++.+.++++.+..++..|+||..   ..+.. ..|.   .+.. ...++++++++.+++||
T Consensus       119 -~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~---~~~~~-p~g~---~~~~~~~~~~i~~i~~~~~vPV  190 (368)
T 3vkj_A          119 -TIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPA---QEVFQ-PEGE---PEYQIYALEKLRDISKELSVPI  190 (368)
T ss_dssp             -SSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHH---HHHHS-SSCC---CBCBTHHHHHHHHHHTTCSSCE
T ss_pred             -CcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecch---hhhhC-CCCC---chhhHHHHHHHHHHHHHcCCCE
Confidence             235665543     4 7889999999988556666777733   22221 1111   1111 36778999999999999


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc----------CC-------------CCCCcCCHHHHHHHHHhc-C
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV----------AD-------------RPRDPAKWGEIADIVAAL-S  202 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~----------~~-------------~~~~~~~~~~i~~i~~~~-~  202 (326)
                      .+|. .|+..  +.+.|+.+.++|+|+|+|.|+..          ..             ..-+.+....+.++++.+ +
T Consensus       191 ivK~-vG~g~--s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~  267 (368)
T 3vkj_A          191 IVKE-SGNGI--SMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPD  267 (368)
T ss_dssp             EEEC-SSSCC--CHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTT
T ss_pred             EEEe-CCCCC--CHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCC
Confidence            9996 43321  24679999999999999955421          00             000233346778888887 4


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +|||++|||+|+.|+.+++ ..|||+||+||+++.
T Consensus       268 ipvia~GGI~~~~d~~kal-~lGA~~v~ig~~~l~  301 (368)
T 3vkj_A          268 SFLVGSGGIRSGLDAAKAI-ALGADIAGMALPVLK  301 (368)
T ss_dssp             CEEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHH
T ss_pred             CcEEEECCCCCHHHHHHHH-HcCCCEEEEcHHHHH
Confidence            9999999999999999999 589999999997764

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=99.76  E-value=8e-18  Score=161.81  Aligned_cols=218  Identities=18%  Similarity=0.153  Sum_probs=141.3

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceeccccccccccccccc--------Ccc-----cccccCC----
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYI--------GST-----DFVEKGT----   63 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~--------~~~-----~~~~~~~----   63 (326)
                      ++++||++|||++.++..++..+.+.|. +++. .+.+.+.+....+......        +..     .+.-...    
T Consensus        40 ~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~-~~~s~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~  118 (404)
T 1eep_A           40 SLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIH-KNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEK  118 (404)
T ss_dssp             EESSSEEECCCTTTCSHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHHHHTCC---------------------------
T ss_pred             ccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHHHHhhccCCCceeccccccccccccccCCCCCH
Confidence            5789999999999999999988888876 5554 4455554433221110000        000     0000000    


Q ss_pred             ----cce----eeec-cc--CCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHH
Q 020428           64 ----DSV----VFRT-CH--QERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIH  132 (326)
Q Consensus        64 ----~~~----~~~~-~~--~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~  132 (326)
                          +..    .+.. ..  ..+.++++++... ++....+...+..|+|.|+||+++               .+|+.+.
T Consensus       119 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~-~~~~~~a~~~~~~G~d~i~i~~~~---------------g~~~~~~  182 (404)
T 1eep_A          119 SDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID-IDTIERVEELVKAHVDILVIDSAH---------------GHSTRII  182 (404)
T ss_dssp             -----------CCTTCCBCTTSCBCCEEEECSC-TTHHHHHHHHHHTTCSEEEECCSC---------------CSSHHHH
T ss_pred             HHHHHHHHHhhhcchhhhhcccCceEEEEeCCC-hhHHHHHHHHHHCCCCEEEEeCCC---------------CChHHHH
Confidence                000    0000 01  1123578888653 333344434444599999998754               1468889


Q ss_pred             HHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEee------cccCCCCCCcCCHHHHHHHHH---hcC
Q 020428          133 DILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG------RKVADRPRDPAKWGEIADIVA---ALS  202 (326)
Q Consensus       133 ~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~------r~~~~~~~~~~~~~~i~~i~~---~~~  202 (326)
                      ++++++++.+ ++||.++.-      .+.+.++.++++|+|+|++.+      .+......+.++++.+..+++   .++
T Consensus       183 e~i~~ir~~~~~~pviv~~v------~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~  256 (404)
T 1eep_A          183 ELIKKIKTKYPNLDLIAGNI------VTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN  256 (404)
T ss_dssp             HHHHHHHHHCTTCEEEEEEE------CSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHCCCCeEEEcCC------CcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence            9999999988 899998532      235778999999999999921      111111123446777777766   468


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +|||++|||.|++|+.+++ ..|||+|++||+++..|+...
T Consensus       257 ipVia~GGI~~~~d~~~al-a~GAd~V~iG~~~l~~~e~~~  296 (404)
T 1eep_A          257 ICIIADGGIRFSGDVVKAI-AAGADSVMIGNLFAGTKESPS  296 (404)
T ss_dssp             CEEEEESCCCSHHHHHHHH-HHTCSEEEECHHHHTBTTSSS
T ss_pred             ceEEEECCCCCHHHHHHHH-HcCCCHHhhCHHHhcCCCCCc
Confidence            9999999999999999999 589999999999999877643

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=99.73  E-value=5.3e-17  Score=153.39  Aligned_cols=193  Identities=18%  Similarity=0.143  Sum_probs=133.9

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++.|+++|||.++|+..+...+.+. |.+++... .+++.....                     +.+..+....|+++
T Consensus        43 ~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~-~s~e~~~~~---------------------I~~vk~~~~~pvga  100 (361)
T 3khj_A           43 SLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKN-MDMESQVNE---------------------VLKVKNSGGLRVGA  100 (361)
T ss_dssp             EESSSEEECSSTTTCSHHHHHHHHHTTCEEEECSS-SCHHHHHHH---------------------HHHHHHTTCCCCEE
T ss_pred             ccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEecC-CCHHHHHHH---------------------HHHHHhccCceEEE
Confidence            46789999999999999999755555 45666532 222221110                     00111223358999


Q ss_pred             EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHH
Q 020428           81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~  160 (326)
                      +++.++   ...+...++.|+|.|.||.+.               .+++.+.+.++.+++.+++||.++.-      .+.
T Consensus       101 ~ig~~~---~e~a~~l~eaGad~I~ld~a~---------------G~~~~~~~~i~~i~~~~~~~Vivg~v------~t~  156 (361)
T 3khj_A          101 AIGVNE---IERAKLLVEAGVDVIVLDSAH---------------GHSLNIIRTLKEIKSKMNIDVIVGNV------VTE  156 (361)
T ss_dssp             EECTTC---HHHHHHHHHTTCSEEEECCSC---------------CSBHHHHHHHHHHHHHCCCEEEEEEE------CSH
T ss_pred             EeCCCH---HHHHHHHHHcCcCeEEEeCCC---------------CCcHHHHHHHHHHHHhcCCcEEEccC------CCH
Confidence            997666   222223334499999998652               14567788899998888999998542      345


Q ss_pred             HHHHHHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          161 ELARRIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +.++.+.++|+|+|.+...      ++.....+.+++..+.++++   .+++|||+.|||.+++|+.+++ ..|||+||+
T Consensus       157 e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kal-a~GAd~V~v  235 (361)
T 3khj_A          157 EATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL-AVGASSVMI  235 (361)
T ss_dssp             HHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHH-HHTCSEEEE
T ss_pred             HHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHH-HcCCCEEEE
Confidence            6789999999999999311      11111223456777777744   4689999999999999999999 589999999


Q ss_pred             ccchhcCccc
Q 020428          232 ARGALWNASI  241 (326)
Q Consensus       232 Gr~~l~~P~l  241 (326)
                      ||+++..+.-
T Consensus       236 Gs~~~~t~Es  245 (361)
T 3khj_A          236 GSILAGTEES  245 (361)
T ss_dssp             STTTTTBTTS
T ss_pred             ChhhhcCCcC
Confidence            9999986654

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.72  E-value=3.7e-17  Score=154.23  Aligned_cols=206  Identities=14%  Similarity=0.125  Sum_probs=125.0

Q ss_pred             CCCCceEEccccCCCCHH------HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVGTLP------FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~------fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      +++.|+++|||+|.++.+      ++.+|+++|..+..+++...-.-        ...  ..|      . +.+..|  +
T Consensus        84 ~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~--------~~~--~~~------~-v~r~~P--~  144 (365)
T 3sr7_A           84 DFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKN--------PDD--TSY------Q-VKKSRP--H  144 (365)
T ss_dssp             EESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------------------------------------
T ss_pred             EccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccccccC--------ccc--cce------E-ehhhCC--C
Confidence            467899999999988754      99999999999988877652210        000  011      0 122222  3


Q ss_pred             CcEEEEECCCC-HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           76 NHVVFQMGTSD-AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        76 ~p~~vQl~g~~-~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      .+++.+|.... .++..++++.+  ++|.+.||+...+..+...  |   ..+.+-..+.++++++.+++||.+|. .|+
T Consensus       145 ~~~ianig~~~~~e~~~~~ve~~--~adal~ihln~~qe~~~p~--G---d~~~~~~~~~I~~l~~~~~~PVivK~-vg~  216 (365)
T 3sr7_A          145 LLLATNIGLDKPYQAGLQAVRDL--QPLFLQVHINLMQELLMPE--G---EREFRSWKKHLSDYAKKLQLPFILKE-VGF  216 (365)
T ss_dssp             CCEEEEEETTSCHHHHHHHHHHH--CCSCEEEEECHHHHHTSSS--S---CCCCHHHHHHHHHHHHHCCSCEEEEE-CSS
T ss_pred             CcEEEEeCCCCCHHHHHHHHHhc--CCCEEEEeccccccccCCC--C---CCcHHHHHHHHHHHHHhhCCCEEEEE-CCC
Confidence            57888997543 44455544443  6666666554222111111  1   12334467889999999999999994 332


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCC---------------CCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHH
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADR---------------PRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQ  218 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~---------------~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~  218 (326)
                      .  .+.+.|+.+.++|+|+|+|+|+...+.               ..+.+..+.+..++... ++|||++|||+|+.|+.
T Consensus       217 g--~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~  294 (365)
T 3sr7_A          217 G--MDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDII  294 (365)
T ss_dssp             C--CCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHH
T ss_pred             C--CCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHH
Confidence            2  234678999999999999977633211               11233346666654322 79999999999999999


Q ss_pred             HHHHhcCCcEEEeccchhc
Q 020428          219 RIKTAAGASSVMAARGALW  237 (326)
Q Consensus       219 ~~l~~~Gad~VmiGr~~l~  237 (326)
                      +++ ..|||+||+||+++.
T Consensus       295 KaL-alGAdaV~ig~~~l~  312 (365)
T 3sr7_A          295 KAL-VLGAKAVGLSRTMLE  312 (365)
T ss_dssp             HHH-HHTCSEEEESHHHHH
T ss_pred             HHH-HcCCCEEEECHHHHH
Confidence            999 599999999998765

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=99.71  E-value=5.9e-18  Score=153.23  Aligned_cols=149  Identities=11%  Similarity=0.135  Sum_probs=115.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCC-----hHHHHHHHHHHh-hcccCcEEEEe
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK-----PELIHDILTMLK-RNLDVPVTCKI  150 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~-----p~~~~~iv~~v~-~~~~~pv~vK~  150 (326)
                      ++-+|++|.-.. . ++.+++ .|++.|-+              |++++++     |+++.++++++. +.+-+++.+|.
T Consensus        76 ~~pv~vgGGir~-~-~~~~~l-~Ga~~Vii--------------gs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~  138 (260)
T 2agk_A           76 PQFLQVGGGIND-T-NCLEWL-KWASKVIV--------------TSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRK  138 (260)
T ss_dssp             TTTSEEESSCCT-T-THHHHT-TTCSCEEE--------------CGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred             CceEEEeCCCCH-H-HHHHHh-cCCCEEEE--------------CcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeee
Confidence            445677766543 3 777777 88887654              5788888     999999999997 55445555553


Q ss_pred             c---------CCCChH---HHH-HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc----CCcEEEeCCCCC
Q 020428          151 R---------LLKSSQ---DTV-ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL----SIPVIANGDVFE  213 (326)
Q Consensus       151 r---------~g~~~~---~~~-e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~----~iPVi~nGgI~s  213 (326)
                      +         .||...   ++. ++++.++++ ++.|++|++++++.+.|+ ||++++++++.+    ++|||++|||.|
T Consensus       139 ~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~~~G~-d~eli~~l~~~~~~~~~iPVIasGGi~s  216 (260)
T 2agk_A          139 TQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGLCGGI-DELLVSKLFEWTKDYDDLKIVYAGGAKS  216 (260)
T ss_dssp             EETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC-------CCC-CHHHHHHHHHHHTTCSSCEEEEESCCCC
T ss_pred             cCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeeccccCcCCC-CHHHHHHHHHhhcccCCceEEEeCCCCC
Confidence            2         156532   557 999999999 999999999999998887 999999999999    999999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEeccch--hcCc-ccccc
Q 020428          214 YDDFQRIKTAA-GASSVMAARGA--LWNA-SIFSS  244 (326)
Q Consensus       214 ~~d~~~~l~~~-Gad~VmiGr~~--l~~P-~lf~~  244 (326)
                      ++|+.++++.+ |+++||+||++  +.+| |.|.+
T Consensus       217 ~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~  251 (260)
T 2agk_A          217 VDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFED  251 (260)
T ss_dssp             THHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHH
T ss_pred             HHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHH
Confidence            99999999766 99999999997  8888 88765

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=99.71  E-value=9e-17  Score=150.45  Aligned_cols=206  Identities=18%  Similarity=0.158  Sum_probs=148.8

Q ss_pred             CCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCC
Q 020428            3 YQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERN   76 (326)
Q Consensus         3 l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (326)
                      +.-|+++||++...      +....+.|.+.|.-.+.+-+.+ .++.                     + +...  ..+.
T Consensus        68 ~~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss-~s~e---------------------~-v~~~--~~~~  122 (352)
T 3sgz_A           68 ISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYAS-YSLE---------------------D-IVAA--APEG  122 (352)
T ss_dssp             ESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCS-SCHH---------------------H-HHHH--STTC
T ss_pred             cCCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCC-CCHH---------------------H-HHHh--ccCc
Confidence            56799999987632      3456677777776555443221 1110                     0 1111  1224


Q ss_pred             cEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc----cccc-------------------ccc---ccCCh
Q 020428           77 HVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV----SGGM-------------------GAA---LLSKP  128 (326)
Q Consensus        77 p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~----~~~~-------------------G~~---l~~~p  128 (326)
                      |..+||. -.|.+...+..++++. |+..+=+....|..-.+    +.++                   ++.   -.-+|
T Consensus       123 ~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  202 (352)
T 3sgz_A          123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKA  202 (352)
T ss_dssp             EEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCT
T ss_pred             cceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCC
Confidence            7899995 4577777777788876 99988888887764221    0010                   111   12356


Q ss_pred             HHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEE
Q 020428          129 ELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVI  206 (326)
Q Consensus       129 ~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi  206 (326)
                      .+.-+.++.+++.+++||.+|...      +.+.|+.+.++|+|+|+|++....+.+.+++.++.+.++++.+  ++|||
T Consensus       203 ~~~w~~i~~lr~~~~~PvivK~v~------~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVi  276 (352)
T 3sgz_A          203 SFCWNDLSLLQSITRLPIILKGIL------TKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVY  276 (352)
T ss_dssp             TCCHHHHHHHHHHCCSCEEEEEEC------SHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEE
T ss_pred             CCCHHHHHHHHHhcCCCEEEEecC------cHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEE
Confidence            677788999999999999999863      3467899999999999997766556666788999999999888  79999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++|||+|++|+.+++ ..|||+|||||+++..+.
T Consensus       277 a~GGI~~g~Dv~kaL-alGA~aV~iGr~~l~~l~  309 (352)
T 3sgz_A          277 MDGGVRTGTDVLKAL-ALGARCIFLGRPILWGLA  309 (352)
T ss_dssp             EESSCCSHHHHHHHH-HTTCSEEEESHHHHHHHH
T ss_pred             EECCCCCHHHHHHHH-HcCCCEEEECHHHHHHHH
Confidence            999999999999999 589999999998886544

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=99.69  E-value=4.9e-16  Score=146.04  Aligned_cols=188  Identities=14%  Similarity=0.074  Sum_probs=128.8

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      +++.||++|||..+|+..++..+.+.|.-.+.+.+.+.+.+....                         ......+...
T Consensus        40 ~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~~~i-------------------------~~~~~~~~~~   94 (361)
T 3r2g_A           40 TLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEF-------------------------KKCKGPVFVS   94 (361)
T ss_dssp             EESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHHHHHHH-------------------------HTCCSCCBEE
T ss_pred             EcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH-------------------------hhcceEEEEE
Confidence            468899999999999999999999998644444444443332211                         1111123333


Q ss_pred             ECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHH
Q 020428           82 MGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDT  159 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~  159 (326)
                      + |.. +...+.++.+.+ |+|.|.++..+..               ++.+.++++.+++.+ ++||.+|.-      .+
T Consensus        95 ~-g~~-~~~~e~~~~a~~aGvdvI~id~a~G~---------------~~~~~e~I~~ir~~~~~~~Vi~G~V------~T  151 (361)
T 3r2g_A           95 V-GCT-ENELQRAEALRDAGADFFCVDVAHAH---------------AKYVGKTLKSLRQLLGSRCIMAGNV------AT  151 (361)
T ss_dssp             E-CSS-HHHHHHHHHHHHTTCCEEEEECSCCS---------------SHHHHHHHHHHHHHHTTCEEEEEEE------CS
T ss_pred             c-CCC-HHHHHHHHHHHHcCCCEEEEeCCCCC---------------cHhHHHHHHHHHHhcCCCeEEEcCc------CC
Confidence            3 233 344445555544 9999999765432               245678899999886 789999732      23


Q ss_pred             HHHHHHHHHcCCcEEEEe--e-cccC---CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          160 VELARRIEKTGVSALAVH--G-RKVA---DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh--~-r~~~---~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .+.++.+.++|+|+|.|.  + +...   ....+.+.++.+.++++... |||+.|||.+++|+.+++ ..|||+||+||
T Consensus       152 ~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kAL-a~GAd~V~iGr  229 (361)
T 3r2g_A          152 YAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKAL-AFGADFVMIGG  229 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHH-HTTCSEEEESG
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHH-HcCCCEEEECh
Confidence            566899999999999983  2 1100   00113346777777766555 999999999999999999 58999999999


Q ss_pred             chhcCc
Q 020428          234 GALWNA  239 (326)
Q Consensus       234 ~~l~~P  239 (326)
                      +++...
T Consensus       230 ~f~~t~  235 (361)
T 3r2g_A          230 MLAGSA  235 (361)
T ss_dssp             GGTTBT
T ss_pred             HHhCCc
Confidence            999764

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.68  E-value=3.8e-16  Score=139.75  Aligned_cols=152  Identities=19%  Similarity=0.256  Sum_probs=122.7

Q ss_pred             CCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc----cCc----
Q 020428           74 ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL----DVP----  145 (326)
Q Consensus        74 ~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~----~~p----  145 (326)
                      .+.|+.+..+-.++++...+   +..|+|.|-++              +.++.+|+.+.++++.+...+    +.+    
T Consensus        73 ~~ipv~v~ggi~~~~~~~~~---l~~Gad~V~lg--------------~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~  135 (244)
T 2y88_A           73 LDVQVELSGGIRDDESLAAA---LATGCARVNVG--------------TAALENPQWCARVIGEHGDQVAVGLDVQIIDG  135 (244)
T ss_dssp             CSSEEEEESSCCSHHHHHHH---HHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             cCCcEEEECCCCCHHHHHHH---HHcCCCEEEEC--------------chHhhChHHHHHHHHHcCCCEEEEEeccccCC
Confidence            34688887777888864433   33588988763              566788999999999876443    222    


Q ss_pred             -EEEEecCCCCh--HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Q 020428          146 -VTCKIRLLKSS--QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       146 -v~vK~r~g~~~--~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~  222 (326)
                       .+||+| +|..  .++.++++.+++.|++.|.+|+|++.+.+.++ +|+.++++++.+++|||++|||.+++|+.++++
T Consensus       136 ~~~v~~~-g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~  213 (244)
T 2y88_A          136 EHRLRGR-GWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTDAPVIASGGVSSLDDLRAIAT  213 (244)
T ss_dssp             EEEEEEG-GGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHT
T ss_pred             CCEEEEC-CccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHh
Confidence             357777 6532  26789999999999999999999998877665 999999999999999999999999999999995


Q ss_pred             hc--CCcEEEeccchhcCcccccc
Q 020428          223 AA--GASSVMAARGALWNASIFSS  244 (326)
Q Consensus       223 ~~--Gad~VmiGr~~l~~P~lf~~  244 (326)
                      .+  |||+||+||+++.+|+.|.+
T Consensus       214 ~~~~Gad~v~vG~al~~~~~~~~~  237 (244)
T 2y88_A          214 LTHRGVEGAIVGKALYARRFTLPQ  237 (244)
T ss_dssp             TGGGTEEEEEECHHHHTTSSCHHH
T ss_pred             hccCCCCEEEEcHHHHCCCcCHHH
Confidence            44  99999999999999998765

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.66  E-value=2.5e-16  Score=156.89  Aligned_cols=166  Identities=14%  Similarity=0.016  Sum_probs=127.1

Q ss_pred             cEEEEECCCCHH--H--------HHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCc
Q 020428           77 HVVFQMGTSDAV--R--------ALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVP  145 (326)
Q Consensus        77 p~~vQl~g~~~~--~--------~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~p  145 (326)
                      ++-+|++|.-.+  +        +..+.+.+..|+|.|.||.+| ..+..+-..++..+.+|+++.++.+..-+ .+-+.
T Consensus       327 ~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~  405 (555)
T 1jvn_A          327 FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDA-VYAAEKYYELGNRGDGTSPIETISKAYGAQAVVIS  405 (555)
T ss_dssp             CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHH-HHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEE
T ss_pred             CCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECCHH-hhCchhhccccccccCHHHHHHHHHHhCCCcEEEE
Confidence            455777664321  1        233444455599999999988 33222223345578899999999998753 33222


Q ss_pred             EEEEe--------------------------------cCCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC
Q 020428          146 VTCKI--------------------------------RLLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAK  190 (326)
Q Consensus       146 v~vK~--------------------------------r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~  190 (326)
                      +.+|.                                ..||+.   .++.++++.++++|++.|++|++++++.+.|+ |
T Consensus       406 iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~-d  484 (555)
T 1jvn_A          406 VDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY-D  484 (555)
T ss_dssp             ECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCC-C
T ss_pred             EEccccccccccccccccccccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCCC-C
Confidence            33331                                125543   35789999999999999999999999998775 9


Q ss_pred             HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          191 WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       191 ~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      |++++++++.+++|||++|||.|++|+.++++.+||++||+||+++.++|.|.+
T Consensus       485 ~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e  538 (555)
T 1jvn_A          485 LELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVND  538 (555)
T ss_dssp             HHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHH
T ss_pred             HHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHH
Confidence            999999999999999999999999999999966899999999999999998875

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=99.64  E-value=6.3e-15  Score=140.38  Aligned_cols=213  Identities=17%  Similarity=0.157  Sum_probs=132.1

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccC---------cccccccC-C---ccee
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIG---------STDFVEKG-T---DSVV   67 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~---------~~~~~~~~-~---~~~~   67 (326)
                      .++.|||+|||.++|+..+...+.+.|. |.+.. +.+++.+...-+.......         ..++.+.. +   .+.+
T Consensus        40 ~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~-~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~  118 (400)
T 3ffs_A           40 SLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHK-NMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSN  118 (400)
T ss_dssp             EESSSEEECSCTTTCSSHHHHHHHTTTCEEEECS-SSCHHHHHHHHHHHHCCC---------------------------
T ss_pred             CCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCC-CCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCCHHHHHHH
Confidence            4688999999999999999999889875 66653 5555444322111100000         00000000 0   0000


Q ss_pred             e--eccc----CCCC--cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh
Q 020428           68 F--RTCH----QERN--HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK  139 (326)
Q Consensus        68 ~--~~~~----~~~~--p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~  139 (326)
                      .  ...+    ++..  .+.+-+...+   ...+...+..|+|.|.++.+.               .+++.+.++++.++
T Consensus       119 ~~~~~~p~~~~d~~g~l~v~~~v~~~~---~e~~~~lveaGvdvIvldta~---------------G~~~~~~e~I~~ik  180 (400)
T 3ffs_A          119 NNIDAYSNENLDNKGRLRVGAAIGVNE---IERAKLLVEAGVDVIVLDSAH---------------GHSLNIIRTLKEIK  180 (400)
T ss_dssp             ----CCTTCCBCTTSSBCCEEEECCC----CHHHHHHHHHTCSEEEECCSC---------------CSBHHHHHHHHHHH
T ss_pred             HHhhhCcchhhccccceeEEeecCCCH---HHHHHHHHHcCCCEEEEeCCC---------------CCcccHHHHHHHHH
Confidence            0  0000    1111  2233333333   223333344499999886431               13566778899998


Q ss_pred             hcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEee------cccCCCCCCcCCHHHHHHHHHh---cCCcEEEeCC
Q 020428          140 RNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG------RKVADRPRDPAKWGEIADIVAA---LSIPVIANGD  210 (326)
Q Consensus       140 ~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~------r~~~~~~~~~~~~~~i~~i~~~---~~iPVi~nGg  210 (326)
                      +.+++||.++.-      .+.+.++.+.++|+|+|.+..      .++.....+.+++..+.++++.   +++|||+.||
T Consensus       181 ~~~~i~Vi~g~V------~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GG  254 (400)
T 3ffs_A          181 SKMNIDVIVGNV------VTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGG  254 (400)
T ss_dssp             TTCCCEEEEEEE------CSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESC
T ss_pred             hcCCCeEEEeec------CCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCC
Confidence            888899988532      346778999999999999931      1222222345678888888764   5899999999


Q ss_pred             CCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          211 VFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |.+.+|+.+++ ..|||+||+||+++..+.
T Consensus       255 I~~~~di~kal-alGAd~V~vGt~f~~t~E  283 (400)
T 3ffs_A          255 IRYSGDIGKAL-AVGASSVMIGSILAGTEE  283 (400)
T ss_dssp             CCSHHHHHHHH-TTTCSEEEECGGGTTBTT
T ss_pred             CCCHHHHHHHH-HcCCCEEEEChHHhcCCC
Confidence            99999999999 689999999999997543

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=6.7e-16  Score=147.86  Aligned_cols=218  Identities=15%  Similarity=0.135  Sum_probs=136.2

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceeccc---------ccccccccccc--cCccc--cccc-C---C
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHK---------LLKCERRVNEY--IGSTD--FVEK-G---T   63 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~---------l~~~~~~~~~~--~~~~~--~~~~-~---~   63 (326)
                      ++++|+++|||+++++..+...+.+.|. +++.|||+....         +.......+..  .+.+.  +..+ .   .
T Consensus        65 ~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~  144 (393)
T 2qr6_A           65 KFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELL  144 (393)
T ss_dssp             EESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             ccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHH
Confidence            4789999999999999999999999885 888887743321         11000000000  00000  0000 0   0


Q ss_pred             cceeeecccCCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc
Q 020428           64 DSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD  143 (326)
Q Consensus        64 ~~~~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~  143 (326)
                      .+ +++...+.+.|+++.+.+.+..+..+.+.  ..++|.+.++ +.|..    .+++.     ++...+-+..+++.++
T Consensus       145 ~~-~i~~~~~~g~~v~~~v~~~~~~e~a~~~~--~agad~i~i~-~~~~~----~~~~~-----~~~~~~~i~~l~~~~~  211 (393)
T 2qr6_A          145 SE-RIAQVRDSGEIVAVRVSPQNVREIAPIVI--KAGADLLVIQ-GTLIS----AEHVN-----TGGEALNLKEFIGSLD  211 (393)
T ss_dssp             HH-HHHHHHHTTSCCEEEECTTTHHHHHHHHH--HTTCSEEEEE-CSSCC----SSCCC-----C-----CHHHHHHHCS
T ss_pred             HH-HHHHHhhcCCeEEEEeCCccHHHHHHHHH--HCCCCEEEEe-CCccc----cccCC-----CcccHHHHHHHHHhcC
Confidence            01 12222334668888888766554443332  2388999887 33321    11211     1111112556677779


Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeeccc----CCCCCCcCCHHHHHHHHHh-------cC---CcEEEeC
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKV----ADRPRDPAKWGEIADIVAA-------LS---IPVIANG  209 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~----~~~~~~~~~~~~i~~i~~~-------~~---iPVi~nG  209 (326)
                      +||.+|.-  .+    .+.++.+.++|+|+|.| ++..    .....+++.++.+.++++.       ++   +|||++|
T Consensus       212 ~pvi~ggi--~t----~e~a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~G  284 (393)
T 2qr6_A          212 VPVIAGGV--ND----YTTALHMMRTGAVGIIV-GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADG  284 (393)
T ss_dssp             SCEEEECC--CS----HHHHHHHHTTTCSEEEE-SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECS
T ss_pred             CCEEECCc--CC----HHHHHHHHHcCCCEEEE-CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEEC
Confidence            99999742  23    34578888999999999 4411    1112356778888888776       54   9999999


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          210 DVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       210 gI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ||+|.+|+.+++ ..|||+||+||+++..+.
T Consensus       285 GI~~~~dv~kal-alGA~~V~iG~~~l~~~e  314 (393)
T 2qr6_A          285 SIENSGDVVKAI-ACGADAVVLGSPLARAEE  314 (393)
T ss_dssp             SCCSHHHHHHHH-HHTCSEEEECGGGGGSTT
T ss_pred             CCCCHHHHHHHH-HcCCCEEEECHHHHcCCC
Confidence            999999999999 589999999999998765

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=99.62  E-value=2.1e-15  Score=142.36  Aligned_cols=192  Identities=20%  Similarity=0.147  Sum_probs=127.2

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++.||++|||.++|+..+...+.+.|. +++...+ +++.+...                      ++...+. .++.+
T Consensus        44 ~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~-s~e~~~~~----------------------i~~vk~~-~~l~v   99 (366)
T 4fo4_A           44 ALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNM-SIEQQAAQ----------------------VHQVKIS-GGLRV   99 (366)
T ss_dssp             EESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSS-CHHHHHHH----------------------HHHHHTT-TSCCC
T ss_pred             ccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecCC-CHHHHHHH----------------------HHHHHhc-CceeE
Confidence            4678999999999999999977777654 5554322 22221110                      1111111 13344


Q ss_pred             EEC-CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHH
Q 020428           81 QMG-TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        81 Ql~-g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~  158 (326)
                      ++. +.+++...++...++.|+|.|.||...          |     +++.+.+.++.+++.. ++||.+..-      .
T Consensus       100 ga~vg~~~~~~~~~~~lieaGvd~I~idta~----------G-----~~~~~~~~I~~ik~~~p~v~Vi~G~v------~  158 (366)
T 4fo4_A          100 GAAVGAAPGNEERVKALVEAGVDVLLIDSSH----------G-----HSEGVLQRIRETRAAYPHLEIIGGNV------A  158 (366)
T ss_dssp             EEECCSCTTCHHHHHHHHHTTCSEEEEECSC----------T-----TSHHHHHHHHHHHHHCTTCEEEEEEE------C
T ss_pred             EEEeccChhHHHHHHHHHhCCCCEEEEeCCC----------C-----CCHHHHHHHHHHHHhcCCCceEeeee------C
Confidence            432 333333333333444599999997521          1     3456778888998887 788877531      3


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccC-------CCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          159 TVELARRIEKTGVSALAVHGRKVA-------DRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~-------~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      +.+.++.+.++|+|+|.+ |....       ....+.+.+..+.++++   .+++|||+.|||.+++|+.+++ ..|||+
T Consensus       159 t~e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kal-a~GAd~  236 (366)
T 4fo4_A          159 TAEGARALIEAGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI-AAGASC  236 (366)
T ss_dssp             SHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSE
T ss_pred             CHHHHHHHHHcCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCE
Confidence            456788999999999999 32111       11124456777777765   5689999999999999999999 589999


Q ss_pred             EEeccchhcCcc
Q 020428          229 VMAARGALWNAS  240 (326)
Q Consensus       229 VmiGr~~l~~P~  240 (326)
                      ||+|+.++..+.
T Consensus       237 V~vGs~f~~t~E  248 (366)
T 4fo4_A          237 VMVGSMFAGTEE  248 (366)
T ss_dssp             EEESTTTTTBTT
T ss_pred             EEEChHhhcCCC
Confidence            999999997554

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.61  E-value=6.6e-15  Score=131.76  Aligned_cols=153  Identities=19%  Similarity=0.275  Sum_probs=114.5

Q ss_pred             CCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE---e
Q 020428           74 ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK---I  150 (326)
Q Consensus        74 ~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK---~  150 (326)
                      .+.|+.+..+-.++++...+   +..|+|.|-+              |+.++.+|+.+.++++.....+.+.++++   +
T Consensus        74 ~~ipv~v~ggI~~~~~~~~~---l~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v  136 (244)
T 1vzw_A           74 MDIKVELSGGIRDDDTLAAA---LATGCTRVNL--------------GTAALETPEWVAKVIAEHGDKIAVGLDVRGTTL  136 (244)
T ss_dssp             CSSEEEEESSCCSHHHHHHH---HHTTCSEEEE--------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred             cCCcEEEECCcCCHHHHHHH---HHcCCCEEEE--------------CchHhhCHHHHHHHHHHcCCcEEEEEEccCCEE
Confidence            35688887777888864433   3348888876              35667889999999888765444445444   1


Q ss_pred             -cCCCCh--HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc--C
Q 020428          151 -RLLKSS--QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA--G  225 (326)
Q Consensus       151 -r~g~~~--~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~--G  225 (326)
                       +.+|..  .++.++++.+++.|++.|.+|++++.+.+.++ +|+.++++++.+++||+++|||.+++|+.++++.+  |
T Consensus       137 ~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~G  215 (244)
T 1vzw_A          137 RGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGP-NLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAG  215 (244)
T ss_dssp             CCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CC-CHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGT
T ss_pred             EEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccCCC-CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCC
Confidence             124532  26788999999999999999999888766554 99999999999999999999999999999999534  9


Q ss_pred             CcEEEeccchhcCcccccc
Q 020428          226 ASSVMAARGALWNASIFSS  244 (326)
Q Consensus       226 ad~VmiGr~~l~~P~lf~~  244 (326)
                      ||+|++||+++.+||.|.+
T Consensus       216 adgv~vG~al~~~~~~~~~  234 (244)
T 1vzw_A          216 VEGAIVGKALYAKAFTLEE  234 (244)
T ss_dssp             EEEEEECHHHHTTSSCHHH
T ss_pred             CceeeeeHHHHcCCCCHHH
Confidence            9999999999999987654

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=1.3e-15  Score=139.65  Aligned_cols=140  Identities=21%  Similarity=0.303  Sum_probs=104.8

Q ss_pred             HHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH------------
Q 020428           91 LTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ------------  157 (326)
Q Consensus        91 ~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~------------  157 (326)
                      .+.|+.+++ |+++|...  ||+|+..+...|+++|++|+.+.+|.    +++++||+.|.|+||..+            
T Consensus        27 ~e~A~~ae~aGA~aI~~l--~~v~~d~~~~~G~arm~~p~~i~~I~----~av~iPV~~K~rig~~~e~qilea~GaD~I  100 (330)
T 2yzr_A           27 VEQAQIAEEAGAVAVMAL--ERVPADIRAAGGVARMSDPALIEEIM----DAVSIPVMAKCRIGHTTEALVLEAIGVDMI  100 (330)
T ss_dssp             HHHHHHHHHHTCSEEEEC--SSCHHHHC--CCCCCCCCHHHHHHHH----HHCSSCEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHcCCCEEEec--CCccccccCCcchhhcCCHHHHHHHH----HhcCCCeEEEEeecchHHHHHHHHcCCCEE
Confidence            345555555 89999432  39999999999999999999988875    456899999999987210            


Q ss_pred             -----------------------------HHHHHHHHHHHcCCcEEEEee--------------cc------------cC
Q 020428          158 -----------------------------DTVELARRIEKTGVSALAVHG--------------RK------------VA  182 (326)
Q Consensus       158 -----------------------------~~~e~a~~l~~~G~d~i~vh~--------------r~------------~~  182 (326)
                                                   +..|.++.+ +.|+++|.+||              |+            ..
T Consensus       101 d~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~  179 (330)
T 2yzr_A          101 DESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDE  179 (330)
T ss_dssp             EEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             ehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHH
Confidence                                         245556666 77888888888              54            11


Q ss_pred             CCCC----CcCCH-------------------------------------HHHHHHHHhcCCcE--EEeCCCCCHHHHHH
Q 020428          183 DRPR----DPAKW-------------------------------------GEIADIVAALSIPV--IANGDVFEYDDFQR  219 (326)
Q Consensus       183 ~~~~----~~~~~-------------------------------------~~i~~i~~~~~iPV--i~nGgI~s~~d~~~  219 (326)
                      +.+.    ..++|                                     ++++++++..++||  |++|||.|++|+.+
T Consensus       180 El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~  259 (330)
T 2yzr_A          180 EVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGVATPADAAL  259 (330)
T ss_dssp             HHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCCCSHHHHHH
T ss_pred             HHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH
Confidence            1111    12334                                     88899998889999  69999999999999


Q ss_pred             HHHhcCCcEEEeccchhcC
Q 020428          220 IKTAAGASSVMAARGALWN  238 (326)
Q Consensus       220 ~l~~~Gad~VmiGr~~l~~  238 (326)
                      +++ .|||+|+|||+++..
T Consensus       260 ~l~-~GaDgV~VGsaI~~a  277 (330)
T 2yzr_A          260 MMQ-LGSDGVFVGSGIFKS  277 (330)
T ss_dssp             HHH-TTCSCEEESHHHHTS
T ss_pred             HHH-cCcCEEeeHHHHhcC
Confidence            994 799999999998853

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=99.59  E-value=3.1e-14  Score=127.05  Aligned_cols=145  Identities=19%  Similarity=0.236  Sum_probs=109.5

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      -++..+  .+++    .|+++++ |+..|-...+||....  ...|.+-|.+|+.+.    ++++++++||..|.|.|. 
T Consensus        13 ~vimdv--~~~e----qa~iae~aGa~av~~l~~~p~d~r--~~gGv~Rm~dp~~I~----~I~~aVsIPVm~k~righ-   79 (291)
T 3o07_A           13 GVIMDV--VTPE----QAKIAEKSGACAVMALESIPADMR--KSGKVCRMSDPKMIK----DIMNSVSIPVMAKVRIGH-   79 (291)
T ss_dssp             CEEEEE--SSHH----HHHHHHHHTCSEEEECSSCHHHHH--TTTCCCCCCCHHHHH----HHHTTCSSCEEEEEETTC-
T ss_pred             Ceeeec--CCHH----HHHHHHHhCchhhhhccCCCchhh--hcCCccccCCHHHHH----HHHHhCCCCeEEEEecCc-
Confidence            366665  3333    3445555 9999999999998743  334788999998755    457788999999999976 


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeec-----------------------------------------ccCC-----------
Q 020428          156 SQDTVELARRIEKTGVSALAVHGR-----------------------------------------KVAD-----------  183 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r-----------------------------------------~~~~-----------  183 (326)
                          ...++.++++|+|.|.-+.+                                         |+..           
T Consensus        80 ----~~EAqilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~  155 (291)
T 3o07_A           80 ----FVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVK  155 (291)
T ss_dssp             ----HHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHH
T ss_pred             ----HHHHHHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHH
Confidence                45578888888888864321                                         1000           


Q ss_pred             -------------CC-C----------CcCCHHHHHHHHHhcCCcE--EEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          184 -------------RP-R----------DPAKWGEIADIVAALSIPV--IANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       184 -------------~~-~----------~~~~~~~i~~i~~~~~iPV--i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                                   .+ .          ..++|++++++++.+++||  |+||||.|++|+.+++ ++|||+||||||++.
T Consensus       156 h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~l-e~GaDGVmVGrAI~~  234 (291)
T 3o07_A          156 HIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLM-QLGCDGVFVGSGIFK  234 (291)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHH-HTTCSCEEECGGGGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHH-HhCCCEEEEchHHhC
Confidence                         12 1          1578999999999999998  5799999999999999 799999999999887


Q ss_pred             Cc
Q 020428          238 NA  239 (326)
Q Consensus       238 ~P  239 (326)
                      .+
T Consensus       235 s~  236 (291)
T 3o07_A          235 SS  236 (291)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=99.56  E-value=5.2e-14  Score=126.34  Aligned_cols=152  Identities=15%  Similarity=0.163  Sum_probs=117.9

Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEE---
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTC---  148 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~v---  148 (326)
                      ..+.|+++.=+-+++++..++.+   .|+|+|-+              |..++.+|+.+.++.+.... .+-+.+++   
T Consensus        73 ~~~iPvi~~Ggi~~~~~~~~~~~---~Gad~V~l--------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~  135 (252)
T 1ka9_F           73 RVFIPLTVGGGVRSLEDARKLLL---SGADKVSV--------------NSAAVRRPELIRELADHFGAQAVVLAIDARWR  135 (252)
T ss_dssp             TCCSCEEEESSCCSHHHHHHHHH---HTCSEEEE--------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEE
T ss_pred             hCCCCEEEECCcCCHHHHHHHHH---cCCCEEEE--------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecC
Confidence            33568887544466665554433   38888876              46677889999998888753 22233333   


Q ss_pred             ------EecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Q 020428          149 ------KIRLLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQR  219 (326)
Q Consensus       149 ------K~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~  219 (326)
                            +++ +|..   .++.+.++.+++.|++.|.+|++++.+.+.++ +|+.++++++.+++|||++|||.+++|+.+
T Consensus       136 ~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~~~ipvia~GGI~~~~d~~~  213 (252)
T 1ka9_F          136 GDFPEVHVA-GGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAVGVPVIASGGAGRMEHFLE  213 (252)
T ss_dssp             TTEEEEEET-TTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHCSSCEEEESCCCSHHHHHH
T ss_pred             CCCEEEEEC-CCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCCC-CHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence                  332 4543   35789999999999999999998888776665 899999999999999999999999999999


Q ss_pred             HHHhcCCcEEEeccchhcCcccccc
Q 020428          220 IKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       220 ~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ++ .+|||+|++||+++.+|+.+.+
T Consensus       214 ~~-~~Gadgv~vgsal~~~~~~~~~  237 (252)
T 1ka9_F          214 AF-QAGAEAALAASVFHFGEIPIPK  237 (252)
T ss_dssp             HH-HTTCSEEEESHHHHTTSSCHHH
T ss_pred             HH-HCCCHHHHHHHHHHcCCCCHHH
Confidence            99 5999999999999999987664

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.55  E-value=7.3e-14  Score=125.47  Aligned_cols=150  Identities=16%  Similarity=0.131  Sum_probs=117.5

Q ss_pred             CCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cccCcEEE----
Q 020428           74 ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NLDVPVTC----  148 (326)
Q Consensus        74 ~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~~~pv~v----  148 (326)
                      .+.|+++.-+-+++++..++.   ..|+|+|-+              |+.++.+|+.+.++++.+.. .+.+.+++    
T Consensus        73 ~~ipvi~~ggI~~~~~~~~~~---~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~  135 (253)
T 1thf_D           73 IDIPFTVGGGIHDFETASELI---LRGADKVSI--------------NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVD  135 (253)
T ss_dssp             CCSCEEEESSCCSHHHHHHHH---HTTCSEEEE--------------SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred             CCCCEEEeCCCCCHHHHHHHH---HcCCCEEEE--------------ChHHHhChHHHHHHHHHcCCCcEEEEEEEEccC
Confidence            346888776667777644443   348998865              46677889999998888753 22233333    


Q ss_pred             -----EecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428          149 -----KIRLLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       149 -----K~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~  220 (326)
                           +++ +|..   .++.++++.+++.|++.|.+|++++.+.+.++ +|+.++++++.+++|||++|||.+++|+.++
T Consensus       136 g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~  213 (253)
T 1thf_D          136 GEFMVFTY-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEA  213 (253)
T ss_dssp             TEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHH
T ss_pred             CcEEEEEC-CCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCC-CHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence                 332 4532   35789999999999999999999888777665 8999999999999999999999999999999


Q ss_pred             HHhcCCcEEEeccchhcCccccc
Q 020428          221 KTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       221 l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      + .+|||+|++||+++.+|+.+.
T Consensus       214 ~-~~Gadgv~vGsal~~~~~~~~  235 (253)
T 1thf_D          214 F-LAGADAALAASVFHFREIDVR  235 (253)
T ss_dssp             H-HTTCSEEEESHHHHTTCSCHH
T ss_pred             H-HcCChHHHHHHHHHcCCCCHH
Confidence            9 599999999999999887544

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=99.53  E-value=2.3e-13  Score=128.17  Aligned_cols=192  Identities=13%  Similarity=0.096  Sum_probs=129.4

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++.||++|||.+.++..+...+.+.|. +.+...+ +.+....             ++...         +..-.++.+
T Consensus        55 ~l~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~~~-s~e~~~~-------------~i~~~---------p~~l~~v~~  111 (351)
T 2c6q_A           55 YSGVPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHY-SLVQWQE-------------FAGQN---------PDCLEHLAA  111 (351)
T ss_dssp             EEECCEEECSSTTTSCHHHHHHHHHTTCEEECCTTC-CHHHHHH-------------HHHHC---------GGGCTTEEE
T ss_pred             cccCCEEECCCCCCCcHHHHHHHHHCCCEEEEcCCC-CHHHHHH-------------HHhhC---------chhhheeEe
Confidence            4678999999999999999998888874 4443322 2221111             00000         000024666


Q ss_pred             EECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChH
Q 020428           81 QMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQ  157 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~  157 (326)
                      .+ |.+++.+.++...+..  +++.+.++..-          |     ++..+.+.++++++.+ ++||.++.-      
T Consensus       112 ~~-g~~~~~~~~~~~l~~~~~g~~~i~i~~~~----------g-----~~~~~~~~i~~lr~~~~~~~vi~g~v------  169 (351)
T 2c6q_A          112 SS-GTGSSDFEQLEQILEAIPQVKYICLDVAN----------G-----YSEHFVEFVKDVRKRFPQHTIMAGNV------  169 (351)
T ss_dssp             EE-CSSHHHHHHHHHHHHHCTTCCEEEEECSC----------T-----TBHHHHHHHHHHHHHCTTSEEEEEEE------
T ss_pred             ec-CCChHHHHHHHHHHhccCCCCEEEEEecC----------C-----CcHHHHHHHHHHHHhcCCCeEEEEeC------
Confidence            66 4556666666666654  78988876421          1     3556778899999988 899998753      


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccC------CCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVA------DRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~------~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      .+.+.|+.+.++|+|+|.|......      ....+.+....+.++.+   ..++|||+.|||.|+.|+.+++ ..|||+
T Consensus       170 ~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAl-alGA~~  248 (351)
T 2c6q_A          170 VTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAF-GAGADF  248 (351)
T ss_dssp             CSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH-HTTCSE
T ss_pred             CCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHH-HcCCCc
Confidence            2356789999999999988421100      00012344555555544   3589999999999999999999 699999


Q ss_pred             EEeccchhcCc
Q 020428          229 VMAARGALWNA  239 (326)
Q Consensus       229 VmiGr~~l~~P  239 (326)
                      |++||.++..+
T Consensus       249 V~vG~~fl~~~  259 (351)
T 2c6q_A          249 VMLGGMLAGHS  259 (351)
T ss_dssp             EEESTTTTTBT
T ss_pred             eeccHHHhcCc
Confidence            99999998643

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=99.52  E-value=3.7e-14  Score=126.76  Aligned_cols=148  Identities=13%  Similarity=0.164  Sum_probs=111.2

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE-----E
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC-----K  149 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v-----K  149 (326)
                      +.|+++.=+-++++++.++.+   .|+|+|-+              |+.++.+|+.+.++ +...+.+-+.+++     +
T Consensus        73 ~ipvi~~Ggi~~~~~~~~~~~---~Gad~V~l--------------g~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~  134 (241)
T 1qo2_A           73 AEHIQIGGGIRSLDYAEKLRK---LGYRRQIV--------------SSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVA  134 (241)
T ss_dssp             GGGEEEESSCCSHHHHHHHHH---TTCCEEEE--------------CHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEEC
T ss_pred             CCcEEEECCCCCHHHHHHHHH---CCCCEEEE--------------CchHhhChHHHHHH-HHcCCcEEEEEEecCCEEE
Confidence            346665433356665555333   48888754              56778889888888 6664332223333     3


Q ss_pred             ecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc--
Q 020428          150 IRLLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA--  224 (326)
Q Consensus       150 ~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~--  224 (326)
                      + .||..   .++.++++.+++.|++.|.+|++++++.+.++ +|+.++++++.+++|||++|||.|++|+.++++.+  
T Consensus       135 ~-~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~  212 (241)
T 1qo2_A          135 F-KGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTE  212 (241)
T ss_dssp             C-TTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred             E-CCceecCCCCHHHHHHHHHhCCCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccc
Confidence            3 25542   25788999999999999999999887766655 89999999999999999999999999999999644  


Q ss_pred             --C-CcEEEeccchhcCcccc
Q 020428          225 --G-ASSVMAARGALWNASIF  242 (326)
Q Consensus       225 --G-ad~VmiGr~~l~~P~lf  242 (326)
                        | ||||++||+++..+.-+
T Consensus       213 ~~G~adgv~vgsal~~~~~~~  233 (241)
T 1qo2_A          213 TNGLLKGVIVGRAFLEGILTV  233 (241)
T ss_dssp             TTTSEEEEEECHHHHTTSSCH
T ss_pred             cCCeEeEEEeeHHHHcCCCCH
Confidence              9 99999999999877543

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=99.50  E-value=2.6e-13  Score=123.35  Aligned_cols=193  Identities=13%  Similarity=0.158  Sum_probs=127.0

Q ss_pred             CCCceEEccccCCCCHH-HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            3 YQNKLVLAPMVRVGTLP-FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         3 l~~~iilAPM~g~t~~~-fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      +.++++++||.+..+.. +...+.++|++.+.+..    .+...                     ..+... ...|+++|
T Consensus        32 id~~~~l~p~~~~~~~~~~~~~~~~~g~~~i~~~~----~~~~~---------------------~~~~~~-~~~~~~v~   85 (273)
T 2qjg_A           32 MDHGVSNGPIKGLIDIRKTVNDVAEGGANAVLLHK----GIVRH---------------------GHRGYG-KDVGLIIH   85 (273)
T ss_dssp             CCHHHHHCSCTTSSSHHHHHHHHHHHTCSEEEECH----HHHHS---------------------CCCSSS-CCCEEEEE
T ss_pred             cccccccCCCcchhhHHHHHHHHHhcCCCEEEeCH----HHHHH---------------------HHHhhc-CCCCEEEE
Confidence            45567789999999874 44556678998776542    11110                     000011 13478889


Q ss_pred             ECCCC-----HH--H-HHHHHHHhhcCCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428           82 MGTSD-----AV--R-ALTAAKMVCKDVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        82 l~g~~-----~~--~-~~~aa~~~~~~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      +.+..     +.  . ..++.+.+..|++.|  .+|.+|+..        ..+   .+.+.++++..++ .++|+.+.+-
T Consensus        86 ~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l~~~~~~~--------~~~---~~~~~~v~~~~~~-~g~~viv~~~  153 (273)
T 2qjg_A           86 LSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDED--------WEA---YRDLGMIAETCEY-WGMPLIAMMY  153 (273)
T ss_dssp             CEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEEEETSTTH--------HHH---HHHHHHHHHHHHH-HTCCEEEEEE
T ss_pred             EcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEEecCCCCH--------HHH---HHHHHHHHHHHHH-cCCCEEEEeC
Confidence            86433     11  1 222223333599999  778887622        111   1334444444443 4888888762


Q ss_pred             -------CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC--HHHHHHHHH
Q 020428          152 -------LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE--YDDFQRIKT  222 (326)
Q Consensus       152 -------~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s--~~d~~~~l~  222 (326)
                             .+.+..+..+.++.+++.|+|+|.++.         +.+++.++++++.+++||++.|||.+  .+|+.+++.
T Consensus       154 ~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~---------~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~  224 (273)
T 2qjg_A          154 PRGKHIQNERDPELVAHAARLGAELGADIVKTSY---------TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIK  224 (273)
T ss_dssp             ECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC---------CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHH
T ss_pred             CCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC---------CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHH
Confidence                   124455556667999999999999873         35899999999999999999999995  888544432


Q ss_pred             ---hcCCcEEEeccchhcCcccc
Q 020428          223 ---AAGASSVMAARGALWNASIF  242 (326)
Q Consensus       223 ---~~Gad~VmiGr~~l~~P~lf  242 (326)
                         ..||++|++||+++.+|+.+
T Consensus       225 ~~~~~Ga~gv~vg~~i~~~~~~~  247 (273)
T 2qjg_A          225 DAMEAGAAGVAVGRNIFQHDDVV  247 (273)
T ss_dssp             HHHHHTCSEEECCHHHHTSSSHH
T ss_pred             HHHHcCCcEEEeeHHhhCCCCHH
Confidence               58999999999999888643

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=99.49  E-value=1.9e-13  Score=123.65  Aligned_cols=152  Identities=12%  Similarity=0.069  Sum_probs=105.3

Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCcccccccccccccc-C--ChHHHHHHHHHHh---hcc--cC
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL-S--KPELIHDILTMLK---RNL--DV  144 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~-~--~p~~~~~iv~~v~---~~~--~~  144 (326)
                      ..+.|+++.=+-++++++.++.+   .|+|++-+.              +.++ .  +|+.+.++++...   +.+  ++
T Consensus        72 ~~~iPvi~~ggi~~~~~i~~~~~---~Gad~v~lg--------------~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  134 (266)
T 2w6r_A           72 LTTLPIIASGGAGKMEHFLEAFL---AGADKALAA--------------SVFHFREIDMRELKEYLKKHGGSGQAVVVAI  134 (266)
T ss_dssp             GCCSCEEEESCCCSTHHHHHHHH---HTCSEEECC--------------CCC------CHHHHHHCC----CCCEEEEEE
T ss_pred             hcCCCEEEECCCCCHHHHHHHHH---cCCcHhhhh--------------HHHHhCCCCHHHHHHHHHHcCCCCCEEEEEE
Confidence            33568887644466677655442   488888763              3444 3  7888888776654   222  22


Q ss_pred             cE-------EEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCH
Q 020428          145 PV-------TCKIRLLKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEY  214 (326)
Q Consensus       145 pv-------~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~  214 (326)
                      ++       .|+++ +|+.   .+..++++.+++.|++.|.+|++++.+.+.++ +++.++++++.+++|||++|||.++
T Consensus       135 d~~~~~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~ipvia~GGI~~~  212 (266)
T 2w6r_A          135 DAKRVDGEFMVFTH-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKM  212 (266)
T ss_dssp             EEEEETTEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCC-CHHHHHHHGGGCCSCEEEESCCCSH
T ss_pred             EEEecCCCEEEEEC-CCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCC-CHHHHHHHHHHcCCCEEEeCCCCCH
Confidence            22       34443 4532   35788899999999999999999888776665 8999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          215 DDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       215 ~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +|+.+++ .+|||+|++|++++.+|+.+.+
T Consensus       213 ed~~~~~-~~Gadgv~vgsal~~~~~~~~~  241 (266)
T 2w6r_A          213 EHFLEAF-LAGADAALAASVFHFREIDMRE  241 (266)
T ss_dssp             HHHHHHH-HHTCSEEEESTTTC--------
T ss_pred             HHHHHHH-HcCCHHHHccHHHHcCCCCHHH
Confidence            9999999 5899999999999999988776

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=99.47  E-value=6.8e-13  Score=118.41  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=115.2

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh-cc----cC-----
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR-NL----DV-----  144 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~-~~----~~-----  144 (326)
                      +.|+++.-+-.+++++.++.+   .|+|+|.++              ..++.+|+.+.++.+.... .+    +.     
T Consensus        77 ~ipvi~~g~i~~~~~~~~~~~---~Gad~V~i~--------------~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g  139 (253)
T 1h5y_A           77 SIPVLVGGGVRSLEDATTLFR---AGADKVSVN--------------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGE  139 (253)
T ss_dssp             SSCEEEESSCCSHHHHHHHHH---HTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSS
T ss_pred             CCCEEEECCCCCHHHHHHHHH---cCCCEEEEC--------------hHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCC
Confidence            468888776678876644332   489999987              3456788888888777642 11    22     


Q ss_pred             cEEEEecCCCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Q 020428          145 PVTCKIRLLKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       145 pv~vK~r~g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~  222 (326)
                      ++.++++.+++  ..+..++++.+.+.|+|.|.+|+++..+...+ .+++.++++++.+++||+++|||.+++++.+++ 
T Consensus       140 ~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~-~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~-  217 (253)
T 1h5y_A          140 YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLG-YDVELIRRVADSVRIPVIASGGAGRVEHFYEAA-  217 (253)
T ss_dssp             SEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSC-CCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-
T ss_pred             cEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCc-CCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH-
Confidence            15777776542  23578889999999999999999988766544 489999999999999999999999999999999 


Q ss_pred             hcCCcEEEeccchhcCccc
Q 020428          223 AAGASSVMAARGALWNASI  241 (326)
Q Consensus       223 ~~Gad~VmiGr~~l~~P~l  241 (326)
                      ..|||+|++||+++.+++-
T Consensus       218 ~~Ga~~v~vgsal~~~~~~  236 (253)
T 1h5y_A          218 AAGADAVLAASLFHFRVLS  236 (253)
T ss_dssp             HTTCSEEEESHHHHTTSSC
T ss_pred             HcCCcHHHHHHHHHcCCCC
Confidence            6999999999999877643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.39  E-value=1.9e-12  Score=127.05  Aligned_cols=134  Identities=22%  Similarity=0.232  Sum_probs=103.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      |..++.+..+..++..|+|.|.||.+|+.               ++.+.++++++++.+ ++||.++.-      .+.+.
T Consensus       225 G~~~~~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~v~~i~~~~p~~~Vi~g~v------~t~e~  283 (490)
T 4avf_A          225 GTGADTGERVAALVAAGVDVVVVDTAHGH---------------SKGVIERVRWVKQTFPDVQVIGGNI------ATAEA  283 (490)
T ss_dssp             CSSTTHHHHHHHHHHTTCSEEEEECSCCS---------------BHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH
T ss_pred             ccccchHHHHHHHhhcccceEEecccCCc---------------chhHHHHHHHHHHHCCCceEEEeee------CcHHH
Confidence            44455566666666569999999988874               356778899999887 789988632      23467


Q ss_pred             HHHHHHcCCcEEEEe------ecccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          163 ARRIEKTGVSALAVH------GRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       163 a~~l~~~G~d~i~vh------~r~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++.+.++|+|+|.+-      ..++.....+.++++.+.++++.+   ++|||+.|||.+++|+.+++ ..|||+||+||
T Consensus       284 a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal-~~GAd~V~vGs  362 (490)
T 4avf_A          284 AKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAM-VAGAYCVMMGS  362 (490)
T ss_dssp             HHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHH-HHTCSEEEECT
T ss_pred             HHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHH-HcCCCeeeecH
Confidence            899999999999982      222222223466888888888754   79999999999999999999 58999999999


Q ss_pred             chhcCc
Q 020428          234 GALWNA  239 (326)
Q Consensus       234 ~~l~~P  239 (326)
                      +++..+
T Consensus       363 ~~~~~~  368 (490)
T 4avf_A          363 MFAGTE  368 (490)
T ss_dssp             TTTTBT
T ss_pred             HHhcCC
Confidence            998744

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.38  E-value=5.1e-12  Score=124.93  Aligned_cols=136  Identities=16%  Similarity=0.139  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHH
Q 020428           87 AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus        87 ~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      ++...++...+..|+|.|+||.+|.               +++...++++++++.+ ++||.+|--      .+.+.|+.
T Consensus       254 ~~~~~~a~~~~~aG~d~v~i~~~~G---------------~~~~~~~~i~~i~~~~~~~pvi~~~v------~t~~~a~~  312 (514)
T 1jcn_A          254 EDDKYRLDLLTQAGVDVIVLDSSQG---------------NSVYQIAMVHYIKQKYPHLQVIGGNV------VTAAQAKN  312 (514)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSCC---------------CSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCEEEeeccCC---------------cchhHHHHHHHHHHhCCCCceEeccc------chHHHHHH
Confidence            3444444444445999999998763               2356778899999988 899988621      34567999


Q ss_pred             HHHcCCcEEEEe---ecc---cCCCCCC---cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          166 IEKTGVSALAVH---GRK---VADRPRD---PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       166 l~~~G~d~i~vh---~r~---~~~~~~~---~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.++|+|+|.+.   |..   +.....+   +..+..+.++++.+++|||++|||.+++|+.+++ ..|||+||+||+++
T Consensus       313 l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kal-a~GAd~V~iG~~~l  391 (514)
T 1jcn_A          313 LIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKAL-ALGASTVMMGSLLA  391 (514)
T ss_dssp             HHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEESTTTT
T ss_pred             HHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH-HcCCCeeeECHHHH
Confidence            999999999982   111   1111112   3356778888888899999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|+....
T Consensus       392 ~~~e~~~~  399 (514)
T 1jcn_A          392 ATTEAPGE  399 (514)
T ss_dssp             TSTTSSCC
T ss_pred             cCCcCCcc
Confidence            99876544

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.38  E-value=2.2e-12  Score=113.70  Aligned_cols=155  Identities=16%  Similarity=0.241  Sum_probs=107.4

Q ss_pred             EEEEECCC----CHHHHHHHHHHhhc-CCCEEEEc-----------cCCCcccccccc--------------------cc
Q 020428           78 VVFQMGTS----DAVRALTAAKMVCK-DVAAIDIN-----------MGCPKSFSVSGG--------------------MG  121 (326)
Q Consensus        78 ~~vQl~g~----~~~~~~~aa~~~~~-~~d~idlN-----------~gcP~~~~~~~~--------------------~G  121 (326)
                      +.+|+.+.    +++...+.|+.+.+ |++++.++           .++|.....+..                    .|
T Consensus         9 ~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~G   88 (223)
T 1y0e_A            9 VSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQ   88 (223)
T ss_dssp             EECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHT
T ss_pred             EEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccCCHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCC
Confidence            55687776    66788888888766 88988876           456763211111                    12


Q ss_pred             ccc-------cCCh-HHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEe--ecccCCCCC--Cc
Q 020428          122 AAL-------LSKP-ELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVH--GRKVADRPR--DP  188 (326)
Q Consensus       122 ~~l-------~~~p-~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh--~r~~~~~~~--~~  188 (326)
                      +..       ..+| +.+.++++.+++.+ +.++.+.+.   +    .+.+..+++.|+|+|.+.  +.+......  ..
T Consensus        89 ad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t----~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~  161 (223)
T 1y0e_A           89 CEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---T----VEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQ  161 (223)
T ss_dssp             CSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---S----HHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTH
T ss_pred             CCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---C----HHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCc
Confidence            211       1234 34567777887765 666766553   2    334667899999999763  344322221  34


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      .+++.++++++.+++||++.|||.|++++.+++ ..|||+|++||+++. |+.
T Consensus       162 ~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~-~~Gad~v~vG~al~~-p~~  212 (223)
T 1y0e_A          162 NDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVM-DLGVHCSVVGGAITR-PKE  212 (223)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHC-HHH
T ss_pred             ccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHH-HcCCCEEEEChHHcC-cHH
Confidence            578899999999999999999999999999999 589999999999665 653

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.37  E-value=2.5e-12  Score=126.42  Aligned_cols=134  Identities=22%  Similarity=0.161  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      |..++.+..+..++..|+|.|.||..||.               .+.+.++++++++.+ ++||.++.-      .+.+.
T Consensus       227 G~~~d~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~i~~ir~~~p~~~Vi~g~v------~t~e~  285 (496)
T 4fxs_A          227 GAAPGNEERVKALVEAGVDVLLIDSSHGH---------------SEGVLQRIRETRAAYPHLEIIGGNV------ATAEG  285 (496)
T ss_dssp             CSSSCCHHHHHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHCTTCCEEEEEE------CSHHH
T ss_pred             ccccchHHHHHHHHhccCceEEecccccc---------------chHHHHHHHHHHHHCCCceEEEccc------CcHHH
Confidence            44444555555556569999999999873               356778899999887 789988532      23467


Q ss_pred             HHHHHHcCCcEEEEee------cccCCCCCCcCCHHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          163 ARRIEKTGVSALAVHG------RKVADRPRDPAKWGEIADIVAA---LSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~------r~~~~~~~~~~~~~~i~~i~~~---~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++.+.++|+|+|.+.+      .++.....+.+++..+.++++.   .++|||++|||.+++|+.+++ ..|||+||+||
T Consensus       286 a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kal-a~GAd~V~iGs  364 (496)
T 4fxs_A          286 ARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI-AAGASCVMVGS  364 (496)
T ss_dssp             HHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEEST
T ss_pred             HHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHH-HcCCCeEEecH
Confidence            8999999999999842      2222222345678888888774   479999999999999999999 58999999999


Q ss_pred             chhcCc
Q 020428          234 GALWNA  239 (326)
Q Consensus       234 ~~l~~P  239 (326)
                      +++...
T Consensus       365 ~f~~t~  370 (496)
T 4fxs_A          365 MFAGTE  370 (496)
T ss_dssp             TTTTBT
T ss_pred             HHhcCC
Confidence            998743

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=99.35  E-value=2.2e-11  Score=116.04  Aligned_cols=144  Identities=13%  Similarity=0.157  Sum_probs=123.9

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~  154 (326)
                      |+...+.+.+++++.++|+.+.+ ||+.|+|++||                +++...++++++|+++ ++++.++.+.+|
T Consensus       138 ~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~gd~~l~vD~n~~~  201 (384)
T 2pgw_A          138 GYFYFLQGETAEELARDAAVGHAQGERVFYLKVGR----------------GEKLDLEITAAVRGEIGDARLRLDANEGW  201 (384)
T ss_dssp             EBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHTTSTTCEEEEECTTCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC----------------CHHHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            44444556789999998888766 99999999885                5788899999999998 688889888889


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +.++++++++.++++|+++|.       +.. .+.+|+..+++++.+++||++++.+.|+++++++++...+|.|++..+
T Consensus       202 ~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~  273 (384)
T 2pgw_A          202 SVHDAINMCRKLEKYDIEFIE-------QPT-VSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPR  273 (384)
T ss_dssp             CHHHHHHHHHHHGGGCCSEEE-------CCS-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEe-------CCC-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcch
Confidence            999999999999999999985       222 466899999999999999999999999999999997777999999999


Q ss_pred             hhcCcccccc
Q 020428          235 ALWNASIFSS  244 (326)
Q Consensus       235 ~l~~P~lf~~  244 (326)
                      .+++++-+.+
T Consensus       274 ~~GGit~~~~  283 (384)
T 2pgw_A          274 EIGGIQPMMK  283 (384)
T ss_dssp             HHTSHHHHHH
T ss_pred             hhCCHHHHHH
Confidence            8888765544

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=99.34  E-value=4e-12  Score=112.73  Aligned_cols=122  Identities=15%  Similarity=0.122  Sum_probs=95.5

Q ss_pred             HhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE
Q 020428           96 MVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA  175 (326)
Q Consensus        96 ~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~  175 (326)
                      .+..|+|.|-++..+              ..+|+.+.++++.+++. +.++.+.+.       +.+.++.++++|+|+|.
T Consensus        97 ~~~aGad~I~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Gad~Ig  154 (229)
T 3q58_A           97 LAQAGADIIAFDASF--------------RSRPVDIDSLLTRIRLH-GLLAMADCS-------TVNEGISCHQKGIEFIG  154 (229)
T ss_dssp             HHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECS-------SHHHHHHHHHTTCSEEE
T ss_pred             HHHcCCCEEEECccc--------------cCChHHHHHHHHHHHHC-CCEEEEecC-------CHHHHHHHHhCCCCEEE
Confidence            344599999887542              23566788888888775 788888763       46778899999999996


Q ss_pred             E--eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          176 V--HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       176 v--h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +  +|+|.... ...++|+.++++++. ++|||++|||.|++|+.+++ ..|||+|+||++++ +|+.+.
T Consensus       155 ~~~~g~t~~~~-~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~-~~GadgV~VGsai~-~p~~~~  220 (229)
T 3q58_A          155 TTLSGYTGPIT-PVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAI-EHGAWAVTVGSAIT-RIEHIC  220 (229)
T ss_dssp             CTTTTSSSSCC-CSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHH-CHHHHH
T ss_pred             ecCccCCCCCc-CCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHH-HcCCCEEEEchHhc-ChHHHH
Confidence            4  56655432 346689999999988 99999999999999999999 58999999997765 565543

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=99.34  E-value=2.5e-11  Score=112.22  Aligned_cols=150  Identities=21%  Similarity=0.267  Sum_probs=96.8

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      .+++++.   +|.++   |+.+.+ |+++|.+.  ||.+...+...|+..+.+++.+.++    ++.+++|+.+|+|.++
T Consensus        22 ~g~i~~~---~~~~~---a~~~~~~Ga~~I~~l--~p~~~~~~~~~G~~~~~~~~~i~~I----~~~~~iPv~~k~r~g~   89 (305)
T 2nv1_A           22 GGVIMDV---INAEQ---AKIAEEAGAVAVMAL--ERVPADIRAAGGVARMADPTIVEEV----MNAVSIPVMAKARIGH   89 (305)
T ss_dssp             TCEEEEE---SSHHH---HHHHHHTTCSEEEEC--CC-------CCCCCCCCCHHHHHHH----HHHCSSCEEEEECTTC
T ss_pred             CCeeecC---CHHHH---HHHHHHcCCCEEEEc--CCCcchhhhccCcccCCCHHHHHHH----HHhCCCCEEecccccc
Confidence            3566643   55444   444444 89999543  3776666677777788888877666    4456899999998743


Q ss_pred             Ch-----------------------------------------HHHHHHHHHHHHcCCcEEEEee--------------c
Q 020428          155 SS-----------------------------------------QDTVELARRIEKTGVSALAVHG--------------R  179 (326)
Q Consensus       155 ~~-----------------------------------------~~~~e~a~~l~~~G~d~i~vh~--------------r  179 (326)
                      ..                                         .+..+.. ...+.|+|+|.++|              |
T Consensus        90 ~~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~-~a~~~Gad~V~~~G~~g~g~~~~~~~h~r  168 (305)
T 2nv1_A           90 IVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEAT-RRIAEGASMLRTKGEPGTGNIVEAVRHMR  168 (305)
T ss_dssp             HHHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHH-HHHHTTCSEEEECCCTTSCCTHHHHHHHH
T ss_pred             hHHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHH-HHHHCCCCEEEeccccCccchHHHHhhhh
Confidence            10                                         0011222 22356666666643              1


Q ss_pred             c------------cCCCCC----CcCCHHHHHHHHHhcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          180 K------------VADRPR----DPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       180 ~------------~~~~~~----~~~~~~~i~~i~~~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +            ..+.+.    .+.+++.++++++.+++||+  ++|||.|++|+.+++ ..|||+|++||+++..+
T Consensus       169 t~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~-~~GadgV~vGsai~~~~  245 (305)
T 2nv1_A          169 KVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSD  245 (305)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHH-HTTCSCEEECGGGGGSS
T ss_pred             hhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHH-HcCCCEEEEcHHHHcCC
Confidence            1            111110    34578999999998899999  999999999999999 58999999999998643

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=99.33  E-value=2.8e-12  Score=114.94  Aligned_cols=97  Identities=16%  Similarity=0.129  Sum_probs=84.0

Q ss_pred             EEEEecCCCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          146 VTCKIRLLKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       146 v~vK~r~g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      ..||+|.++.  ..++.++++.++++|+++|+++..+..... .+.+++.++++++.+++||+++|||+|++++++++ .
T Consensus        22 ~~v~~~~~~~~~~~~~~~~a~~~~~~G~~~i~v~d~~~~~~~-~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l-~   99 (247)
T 3tdn_A           22 FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTK-SGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-L   99 (247)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTCS-SCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH-H
T ss_pred             EEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEecCcccCC-CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-H
Confidence            5678885543  247899999999999999999998766443 35689999999999999999999999999999999 5


Q ss_pred             cCCcEEEeccchhcCcccccc
Q 020428          224 AGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      .|||+|++||+++.||+++.+
T Consensus       100 ~Gad~V~ig~~~l~dp~~~~~  120 (247)
T 3tdn_A          100 RGADKVSINTAAVENPSLITQ  120 (247)
T ss_dssp             TTCSEECCSHHHHHCTHHHHH
T ss_pred             cCCCeeehhhHHhhChHHHHH
Confidence            899999999999999998765

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=99.32  E-value=3.5e-10  Score=100.25  Aligned_cols=200  Identities=14%  Similarity=0.140  Sum_probs=134.7

Q ss_pred             CCCCceEEccccCCCCH-HHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTL-PFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~-~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      ++..|+++.- ..|.+. .++...+..|+.++..-+   ....-.+.  ...-+            +++..+..+..+..
T Consensus        17 ~f~SRl~~Gt-gky~~~~~~~~a~~asg~e~vtva~---rR~~~~~~--~~~~~------------~~~~i~~~~~~~lp   78 (265)
T 1wv2_A           17 TYGSRLLVGT-GKYKDLDETRRAIEASGAEIVTVAV---RRTNIGQN--PDEPN------------LLDVIPPDRYTILP   78 (265)
T ss_dssp             EESCCEEECC-SCSSSHHHHHHHHHHSCCSEEEEEG---GGCCC---------------------------CTTTSEEEE
T ss_pred             EeecceEEec-CCCCCHHHHHHHHHHhCCCeEEEEE---EeeccccC--CCcch------------HHhhhhhcCCEECC
Confidence            3566776643 456665 566777777988774321   11100000  00011            23334444455667


Q ss_pred             EEC-CCCHHHHHHHHHHhhc---CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           81 QMG-TSDAVRALTAAKMVCK---DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        81 Ql~-g~~~~~~~~aa~~~~~---~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      |-. +.+.++.+..|+++.+   +-++|-|-.-.       +  --.++.|+....+..+.+.+. ++.+..-+-     
T Consensus        79 NTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~-------d--~~~llpD~~~tv~aa~~L~~~-Gf~Vlpy~~-----  143 (265)
T 1wv2_A           79 NTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLA-------D--QKTLFPNVVETLKAAEQLVKD-GFDVMVYTS-----  143 (265)
T ss_dssp             ECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBS-------C--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEEC-----
T ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeec-------C--ccccCcCHHHHHHHHHHHHHC-CCEEEEEeC-----
Confidence            764 4689999999999887   56788775421       1  124678888887777777554 555543332     


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                       +...+++.++++|++.|..++..... ..+..++++++.+++..++|||+.|||.|++|+..++ +.|||+|++|+++.
T Consensus       144 -dd~~~akrl~~~G~~aVmPlg~pIGs-G~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~Am-eLGAdgVlVgSAI~  220 (265)
T 1wv2_A          144 -DDPIIARQLAEIGCIAVMPLAGLIGS-GLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAM-ELGCEAVLMNTAIA  220 (265)
T ss_dssp             -SCHHHHHHHHHSCCSEEEECSSSTTC-CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HHTCSEEEESHHHH
T ss_pred             -CCHHHHHHHHHhCCCEEEeCCccCCC-CCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEChHHh
Confidence             34678999999999999888874332 2355689999999999999999999999999999999 58999999999975


Q ss_pred             c
Q 020428          237 W  237 (326)
Q Consensus       237 ~  237 (326)
                      .
T Consensus       221 ~  221 (265)
T 1wv2_A          221 H  221 (265)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=99.32  E-value=7.3e-12  Score=111.27  Aligned_cols=120  Identities=13%  Similarity=0.145  Sum_probs=94.2

Q ss_pred             HhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE
Q 020428           96 MVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA  175 (326)
Q Consensus        96 ~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~  175 (326)
                      .+..|+|.|-++..+              ..+|+.+.++++.+++. ++++.+.+.       +.+.++.+++.|+|+|.
T Consensus        97 ~~~~Gad~V~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Gad~Ig  154 (232)
T 3igs_A           97 LAQAGAAIIAVDGTA--------------RQRPVAVEALLARIHHH-HLLTMADCS-------SVDDGLACQRLGADIIG  154 (232)
T ss_dssp             HHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECC-------SHHHHHHHHHTTCSEEE
T ss_pred             HHHcCCCEEEECccc--------------cCCHHHHHHHHHHHHHC-CCEEEEeCC-------CHHHHHHHHhCCCCEEE
Confidence            344599999886532              24567788888888775 788887763       45778899999999996


Q ss_pred             E--eecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          176 V--HGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       176 v--h~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +  +|++.... ...++|+.++++++. ++|||++|||.|++|+.+++ ..|||+|+||++++ +|+.
T Consensus       155 ~~~~g~t~~~~-~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~-~~GadgV~VGsal~-~p~~  218 (232)
T 3igs_A          155 TTMSGYTTPDT-PEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAI-RYGAWAVTVGSAIT-RLEH  218 (232)
T ss_dssp             CTTTTSSSSSC-CSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHH-CHHH
T ss_pred             EcCccCCCCCC-CCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHH-HcCCCEEEEehHhc-CHHH
Confidence            4  56655443 245689999999988 99999999999999999999 58999999998866 4544

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.29  E-value=1.4e-11  Score=109.33  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=106.9

Q ss_pred             CCcEEEEECCCC----HH--HHHHHHHHhhc-CCCEEEEc-----------cCCCccccccc------------------
Q 020428           75 RNHVVFQMGTSD----AV--RALTAAKMVCK-DVAAIDIN-----------MGCPKSFSVSG------------------  118 (326)
Q Consensus        75 ~~p~~vQl~g~~----~~--~~~~aa~~~~~-~~d~idlN-----------~gcP~~~~~~~------------------  118 (326)
                      +.++++|....+    ++  .+.+.++.+.+ |+++|.++           .++|.-.+.++                  
T Consensus        17 ~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~   96 (234)
T 1yxy_A           17 GIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQ   96 (234)
T ss_dssp             SCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHH
T ss_pred             CEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecCCHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHH
Confidence            345666665543    56  66677776665 88888887           44554211111                  


Q ss_pred             --cccccc-------cCCh--HHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEE--EEeecccCCC
Q 020428          119 --GMGAAL-------LSKP--ELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSAL--AVHGRKVADR  184 (326)
Q Consensus       119 --~~G~~l-------~~~p--~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i--~vh~r~~~~~  184 (326)
                        ..|+..       ..+|  +.+.++++.+++.. +.++.+.++       +.+.+..+.++|+|+|  ++++.+....
T Consensus        97 ~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~-------t~~ea~~a~~~Gad~i~~~v~g~~~~~~  169 (234)
T 1yxy_A           97 LAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS-------TFDEGLVAHQAGIDFVGTTLSGYTPYSR  169 (234)
T ss_dssp             HHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECS-------SHHHHHHHHHTTCSEEECTTTTSSTTSC
T ss_pred             HHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCC-------CHHHHHHHHHcCCCEEeeeccccCCCCc
Confidence              223221       1123  25567788887765 677777664       2344788899999999  7887754322


Q ss_pred             CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          185 PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       185 ~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ...+.+++.++++++. ++||++.|||+|++++.+++ ..|||+|++||+++.
T Consensus       170 ~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~-~~Gad~v~vGsal~~  220 (234)
T 1yxy_A          170 QEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKIN-DLGVAGIVVGGAITR  220 (234)
T ss_dssp             CSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHH-TTCCSEEEECHHHHC
T ss_pred             CCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHH-HCCCCEEEEchHHhC
Confidence            2235689999999988 99999999999999999999 589999999999876

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=99.27  E-value=2.7e-11  Score=134.92  Aligned_cols=193  Identities=11%  Similarity=0.031  Sum_probs=134.1

Q ss_pred             CCceEEcccc-CCCCHHHHHHHHHcCC-CeE-EeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            4 QNKLVLAPMV-RVGTLPFRLLAAQYGA-DIT-YGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         4 ~~~iilAPM~-g~t~~~fr~~~~~~G~-~l~-~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +.|||+|||. ++|+..+...+.+.|. |.+ ...+.+.+.+...-+.                   .+.....+.|+++
T Consensus       582 ~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~-------------------vk~~~~~~~p~gv  642 (2060)
T 2uva_G          582 VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISK-------------------IEKAIPPGRGITV  642 (2060)
T ss_dssp             SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHH-------------------HGGGSCTTCCEEE
T ss_pred             cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHH-------------------HHhhcccCCCeEe
Confidence            6799999999 6999999999999986 555 3344444433211110                   0001112468999


Q ss_pred             EECCCCHHH---HHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           81 QMGTSDAVR---ALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        81 Ql~g~~~~~---~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      ++...+|..   +.+..+.+.+ +++.  |.+..|.|..               +.+.+++   ++. ++++....   .
T Consensus       643 N~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p~~---------------e~~~~~l---~~~-gi~~i~~v---~  700 (2060)
T 2uva_G          643 NLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVPSI---------------EVANEYI---QTL-GIRHISFK---P  700 (2060)
T ss_dssp             EEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCCCH---------------HHHHHHH---HHS-CCSEEEEC---C
T ss_pred             cccccCcccchhHHHHHHHHHHcCCCcceEeecCCCCCH---------------HHHHHHH---HHc-CCeEEEec---C
Confidence            997755542   3345555555 7777  8888877632               2333333   333 77776433   2


Q ss_pred             ChHHHHHHHHHHHHcCCcEEE---EeecccCCCCCC----cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH------
Q 020428          155 SSQDTVELARRIEKTGVSALA---VHGRKVADRPRD----PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIK------  221 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~---vh~r~~~~~~~~----~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l------  221 (326)
                      +..++.+.+..+.++|+|.|+   +.|....++.+.    ...+.++.+|++.+++|||+.|||.|.+++.+++      
T Consensus       701 ~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~  780 (2060)
T 2uva_G          701 GSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWST  780 (2060)
T ss_dssp             CSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGG
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchh
Confidence            346777777888999999999   888766655431    2236788999999999999999999999999999      


Q ss_pred             -----HhcCCcEEEeccchhcC
Q 020428          222 -----TAAGASSVMAARGALWN  238 (326)
Q Consensus       222 -----~~~Gad~VmiGr~~l~~  238 (326)
                           . .|||||++|+.++..
T Consensus       781 ~~g~pa-lGAdgV~~GT~f~~t  801 (2060)
T 2uva_G          781 KFGYPP-MPFDGCMFGSRMMTA  801 (2060)
T ss_dssp             TTTSCC-CCCSCEEESGGGGGB
T ss_pred             hcCCCC-CCCCEEEEchhhhcC
Confidence                 5 799999999999964

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=99.23  E-value=1.5e-10  Score=109.19  Aligned_cols=141  Identities=9%  Similarity=0.138  Sum_probs=117.9

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+-..++..+++++.++++.+.+ ||+.|.|++||+               +++...++++++|+++  ++++.++.+.+
T Consensus       135 p~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~~  199 (359)
T 1mdl_A          135 QAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQS  199 (359)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred             eeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            44444333678899888887765 999999999873               4678889999999987  68999999989


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |+.++++++++.++++|+++|.       +. ..+.+|+..+++++.+++||++.+.+.|+++++++++...+|.|++..
T Consensus       200 ~~~~~a~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~  271 (359)
T 1mdl_A          200 LDVPAAIKRSQALQQEGVTWIE-------EP-TLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDA  271 (359)
T ss_dssp             SCHHHHHHHHHHHHHHTCSCEE-------CC-SCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred             CCHHHHHHHHHHHHHhCCCeEE-------CC-CChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecc
Confidence            9999999999999999999872       32 245689999999999999999999999999999999877799999987


Q ss_pred             chhcCcc
Q 020428          234 GALWNAS  240 (326)
Q Consensus       234 ~~l~~P~  240 (326)
                      +-++..+
T Consensus       272 ~~~GGi~  278 (359)
T 1mdl_A          272 MKIGGVT  278 (359)
T ss_dssp             TTTTHHH
T ss_pred             hhhCCHH
Confidence            6655544

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=99.20  E-value=2.2e-10  Score=108.59  Aligned_cols=135  Identities=15%  Similarity=0.162  Sum_probs=116.7

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.|+.+.+ ||+.|.|++||+               +++...++++++|+++  ++++.++.+.+|+.++++++
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~  210 (371)
T 2ovl_A          146 PVADLKTQADRFLAGGFRAIKMKVGRP---------------DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRA  210 (371)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence            79999888887765 999999999984               4677889999999987  68999999999999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccc
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF  242 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf  242 (326)
                      ++.++++|+++|.       +. ..+.+|+..+++++.+++||++.+.+.|+++++++++...+|.|++..+-++.++-+
T Consensus       211 ~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~  282 (371)
T 2ovl_A          211 ARALAPFDLHWIE-------EP-TIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTF  282 (371)
T ss_dssp             HHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHH
T ss_pred             HHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHH
Confidence            9999999999873       33 245689999999999999999999999999999999877899999988777666544


Q ss_pred             c
Q 020428          243 S  243 (326)
Q Consensus       243 ~  243 (326)
                      .
T Consensus       283 ~  283 (371)
T 2ovl_A          283 R  283 (371)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=99.18  E-value=2.8e-10  Score=108.19  Aligned_cols=137  Identities=13%  Similarity=0.020  Sum_probs=115.6

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+...++..+++++.++|+.+.+ ||+.|+|++|+                +++...++++++|+++  ++++.++.+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~d~~l~vDan~~  199 (379)
T 2rdx_A          136 PMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------DWQSDIDRIRACLPLLEPGEKAMADANQG  199 (379)
T ss_dssp             EBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHGGGSCTTCEEEEECTTC
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence            33333444678999888887765 99999999886                4688899999999998  58999999989


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |+.++++++++.++++|+ +|.       +..  + +++..+++++.+++||++.+.++|+++++++++...+|.|++-.
T Consensus       200 ~~~~~a~~~~~~l~~~~i-~iE-------~P~--~-~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~  268 (379)
T 2rdx_A          200 WRVDNAIRLARATRDLDY-ILE-------QPC--R-SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKI  268 (379)
T ss_dssp             SCHHHHHHHHHHTTTSCC-EEE-------CCS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEET
T ss_pred             CCHHHHHHHHHHHHhCCe-EEe-------CCc--C-CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence            999999999999999999 762       332  2 89999999999999999999999999999999877899999987


Q ss_pred             chhcCcc
Q 020428          234 GALWNAS  240 (326)
Q Consensus       234 ~~l~~P~  240 (326)
                      +-.+.++
T Consensus       269 ~~~GGit  275 (379)
T 2rdx_A          269 SNLGGLS  275 (379)
T ss_dssp             TTTTSHH
T ss_pred             cccCCHH
Confidence            7666554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.17  E-value=1.1e-10  Score=114.95  Aligned_cols=130  Identities=20%  Similarity=0.179  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHH
Q 020428           87 AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus        87 ~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      .+.+.++..++..|+|.|.|+..+|.               ++.+.++++++++.. ++||.++.-      .+.+.++.
T Consensus       255 ~d~~era~aLveaGvd~I~Id~a~g~---------------~~~v~~~i~~i~~~~~~~~vi~g~v------~t~e~a~~  313 (511)
T 3usb_A          255 ADAMTRIDALVKASVDAIVLDTAHGH---------------SQGVIDKVKEVRAKYPSLNIIAGNV------ATAEATKA  313 (511)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHCTTSEEEEEEE------CSHHHHHH
T ss_pred             cchHHHHHHHHhhccceEEecccccc---------------hhhhhhHHHHHHHhCCCceEEeeee------ccHHHHHH
Confidence            34455555555559999999987663               345778899998887 478887642      24567899


Q ss_pred             HHHcCCcEEEEeecccC-------CCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          166 IEKTGVSALAVHGRKVA-------DRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~-------~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.++|+|+|.+ |....       ....+.+++..+.++++   .+++|||+.|||.+++|+.+++ ..|||+||+||++
T Consensus       314 ~~~aGad~i~v-g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal-a~GA~~V~vGs~~  391 (511)
T 3usb_A          314 LIEAGANVVKV-GIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKAL-AAGAHVVMLGSMF  391 (511)
T ss_dssp             HHHHTCSEEEE-CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH-HTTCSEEEESTTT
T ss_pred             HHHhCCCEEEE-CCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-HhCchhheecHHH
Confidence            99999999998 22211       11234567777776654   4579999999999999999999 5899999999998


Q ss_pred             hcCc
Q 020428          236 LWNA  239 (326)
Q Consensus       236 l~~P  239 (326)
                      +...
T Consensus       392 ~~~~  395 (511)
T 3usb_A          392 AGVA  395 (511)
T ss_dssp             TTBT
T ss_pred             hcCc
Confidence            8643

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=99.16  E-value=2.3e-10  Score=104.69  Aligned_cols=206  Identities=16%  Similarity=0.070  Sum_probs=138.0

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCce--ecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE---CCCCH
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEI--IDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM---GTSDA   87 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl---~g~~~   87 (326)
                      .+.-|....+++.+.|.+.+++.-.  +...+.+      .+.+...+.+.  ....-......+.|+++.+   +|.++
T Consensus        22 ~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~------pD~~~vt~~em--~~~~~~I~~~~~~PviaD~d~Gyg~~~   93 (295)
T 1xg4_A           22 VGTINANHALLAQRAGYQAIYLSGGGVAAGSLGL------PDLGISTLDDV--LTDIRRITDVCSLPLLVDADIGFGSSA   93 (295)
T ss_dssp             EECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCC------CSSSCSCHHHH--HHHHHHHHHHCCSCEEEECTTCSSSSH
T ss_pred             ecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCC------CCCCCCCHHHH--HHHHHHHHhhCCCCEEecCCcccCCCH
Confidence            4667999999999999987775422  2112211      11111110000  0000111122345899999   66689


Q ss_pred             HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC----ChHHHHHH
Q 020428           88 VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK----SSQDTVEL  162 (326)
Q Consensus        88 ~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~----~~~~~~e~  162 (326)
                      +...+.++.+.+ |+++|.|+-+| .++++....|..|....+.+..|-.++....+.++.+.-|...    ..+++++-
T Consensus        94 ~~~~~~v~~l~~aGa~gv~iEd~~-~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~r  172 (295)
T 1xg4_A           94 FNVARTVKSMIKAGAAGLHIEDQV-GAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIER  172 (295)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECBC-SSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEECCCC-CCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHH
Confidence            999999988877 99999999998 3444544445557665566666555555555677888888742    23689999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCC--CCHHHHHHHHHhcCCcEEEeccchh
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDV--FEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI--~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.++++|+|.|.+++.+         +++.++++.+.+++|+++|.-.  .++..-.+-+++.|++.|++|.+++
T Consensus       173 a~ay~eAGAd~i~~e~~~---------~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~  239 (295)
T 1xg4_A          173 AQAYVEAGAEMLFPEAIT---------ELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAF  239 (295)
T ss_dssp             HHHHHHTTCSEEEETTCC---------SHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHH
T ss_pred             HHHHHHcCCCEEEEeCCC---------CHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHH
Confidence            999999999999998752         6899999999999999988764  2222222334479999999998755

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=99.15  E-value=1.2e-09  Score=98.76  Aligned_cols=199  Identities=16%  Similarity=0.112  Sum_probs=120.4

Q ss_pred             CCCCceEEccccCCCCH-HHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTL-PFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~-~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +++||++++. +|+.+. .+.....+.|++++-..+  +    +...   ...+..        + +++..++.+.+++.
T Consensus        10 ~~~~~~~~~t-~g~p~~~~~~~~l~~~Gad~ielg~--p----r~~~---~g~~~~--------~-~~~~l~~~~~~~~p   70 (264)
T 1xm3_A           10 SFQSRLLLGT-GKYPSFDIQKEAVAVSESDILTFAV--R----RMNI---FEASQP--------N-FLEQLDLSKYTLLP   70 (264)
T ss_dssp             EESCCEEEEC-SCSSCHHHHHHHHHHHTCSEEEEET--T----SSTT---C----------------CTTCCGGGSEEEE
T ss_pred             EecCCCEEEe-cCCCCHHHHHHHHHHcCCeEEEEcc--c----cccc---CCCCHH--------H-HHHHHHhcCCeEcC
Confidence            6899999986 677664 445566666999884332  1    1000   000000        1 22223333346777


Q ss_pred             EECC-CCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCC
Q 020428           81 QMGT-SDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKS  155 (326)
Q Consensus        81 Ql~g-~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~  155 (326)
                      |..+ .++++..+.++.+.+  +.+.|.++.- |..        ..+   ++...++++.+++.+  ++.+..-.-  .+
T Consensus        71 n~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~-~d~--------~~~---~~e~~~~~~~a~~~~~~g~~vi~~~~--~~  136 (264)
T 1xm3_A           71 NTAGASTAEEAVRIARLAKASGLCDMIKVEVI-GCS--------RSL---LPDPVETLKASEQLLEEGFIVLPYTS--DD  136 (264)
T ss_dssp             ECTTCSSHHHHHHHHHHHHHTTCCSSEEECCB-CCT--------TTC---CBCHHHHHHHHHHHHHTTCCEEEEEC--SC
T ss_pred             CccccCCHHHHHHHHHHHHHcCCCCeEEEeec-CCC--------ccc---ccchHHHHHHHHHHHCCCeEEEEEcC--CC
Confidence            8866 678876666666655  4566776641 100        001   123445566665543  333332111  22


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                          .+.++.+.+.|+|+|...+...... .+..+++.++.+++..++||++.|||.|++|+.+++ ..|||+|+||+++
T Consensus       137 ----~~~a~~~~~~gad~v~~~~~~~Gt~-~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~-~~GAdgViVGSAi  210 (264)
T 1xm3_A          137 ----VVLARKLEELGVHAIMPGASPIGSG-QGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAM-ELGADGVLLNTAV  210 (264)
T ss_dssp             ----HHHHHHHHHHTCSCBEECSSSTTCC-CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HTTCSEEEESHHH
T ss_pred             ----HHHHHHHHHhCCCEEEECCcccCCC-CCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHH-HcCCCEEEEcHHH
Confidence                2467888899999994323221111 233458889999998899999999999999999999 6999999999997


Q ss_pred             hcCc
Q 020428          236 LWNA  239 (326)
Q Consensus       236 l~~P  239 (326)
                      +..+
T Consensus       211 ~~a~  214 (264)
T 1xm3_A          211 SGAD  214 (264)
T ss_dssp             HTSS
T ss_pred             hCCC
Confidence            7543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.15  E-value=2e-10  Score=112.97  Aligned_cols=132  Identities=22%  Similarity=0.242  Sum_probs=96.0

Q ss_pred             HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHH
Q 020428           90 ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIE  167 (326)
Q Consensus        90 ~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~  167 (326)
                      +.+.+..+.+ |+|.|.++++.          |     +++...++++++++.+ ++||.++.-  .    +.+.++.+.
T Consensus       238 ~~~~a~~l~~aGvd~v~i~~~~----------G-----~~~~~~e~i~~i~~~~p~~pvi~g~~--~----t~e~a~~l~  296 (494)
T 1vrd_A          238 TMERVEKLVKAGVDVIVIDTAH----------G-----HSRRVIETLEMIKADYPDLPVVAGNV--A----TPEGTEALI  296 (494)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSC----------C-----SSHHHHHHHHHHHHHCTTSCEEEEEE--C----SHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEEecC----------C-----chHHHHHHHHHHHHHCCCceEEeCCc--C----CHHHHHHHH
Confidence            3444554444 99999997641          1     3456778899999988 799988642  2    245568889


Q ss_pred             HcCCcEEEEeecccC------CCCCCcCCHHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          168 KTGVSALAVHGRKVA------DRPRDPAKWGEIADIVAA---LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~------~~~~~~~~~~~i~~i~~~---~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ++|+|+|.+.+....      ....+.+.+..+..+++.   +++|||+.|||.+++|+.+++ ..|||+|++||+++.+
T Consensus       297 ~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kal-a~GAd~V~iGr~~l~~  375 (494)
T 1vrd_A          297 KAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL-AAGAESVMVGSIFAGT  375 (494)
T ss_dssp             HTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHTB
T ss_pred             HcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHH-HcCCCEEEECHHHhcC
Confidence            999999999432110      001134456666666554   689999999999999999999 5899999999999988


Q ss_pred             ccccc
Q 020428          239 ASIFS  243 (326)
Q Consensus       239 P~lf~  243 (326)
                      |....
T Consensus       376 ~e~~~  380 (494)
T 1vrd_A          376 EEAPG  380 (494)
T ss_dssp             TTSSS
T ss_pred             CcCCc
Confidence            77644

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=99.14  E-value=4.7e-10  Score=106.95  Aligned_cols=139  Identities=8%  Similarity=0.003  Sum_probs=115.9

Q ss_pred             cEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+-..++ ..+++++.++|+.+.+ ||+.|+|++||               .+++. .++++++|+++  ++++.++...
T Consensus       154 p~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~-~e~v~avr~a~g~d~~l~vDan~  217 (388)
T 2nql_A          154 PAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV---------------ADDGP-AAEIANLRQVLGPQAKIAADMHW  217 (388)
T ss_dssp             EEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG---------------CTTCH-HHHHHHHHHHHCTTSEEEEECCS
T ss_pred             EeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC---------------CChHH-HHHHHHHHHHhCCCCEEEEECCC
Confidence            4444443 3689999988887765 99999999875               24667 89999999987  6899999988


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.++++|+++|.       +. ..+.+|+..+++++.+++||++.+.+.|+++++++++...+|.|++-
T Consensus       218 ~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik  289 (388)
T 2nql_A          218 NQTPERALELIAEMQPFDPWFAE-------AP-VWTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIVQPE  289 (388)
T ss_dssp             CSCHHHHHHHHHHHGGGCCSCEE-------CC-SCTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEECCC
T ss_pred             CCCHHHHHHHHHHHhhcCCCEEE-------CC-CChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence            99999999999999999999873       32 24568999999999999999999999999999999976779999997


Q ss_pred             cchhcCcc
Q 020428          233 RGALWNAS  240 (326)
Q Consensus       233 r~~l~~P~  240 (326)
                      ..- +.++
T Consensus       290 ~~~-GGit  296 (388)
T 2nql_A          290 MGH-KGIT  296 (388)
T ss_dssp             HHH-HCHH
T ss_pred             CCC-CCHH
Confidence            665 5543

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=99.13  E-value=7.4e-10  Score=105.25  Aligned_cols=141  Identities=10%  Similarity=0.076  Sum_probs=119.0

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      .|+...++..+++.+.+.++.+.+ ||+.|.+++|||               +++...++++++|+++  ++++.++.+.
T Consensus       135 v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~  199 (378)
T 2qdd_A          135 VPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS---------------DPAQDIARIEAISAGLPDGHRVTFDVNR  199 (378)
T ss_dssp             EEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHSCCTTCEEEEECTT
T ss_pred             CceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC---------------ChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            355555656789999888887765 999999999986               4678889999999988  6889999988


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.++ +|+ +|       ++..  + +|+..+++++.+++||++.+.+.|+++++++++...+|.|++-
T Consensus       200 ~~~~~~a~~~~~~l~-~~i-~i-------EqP~--~-d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik  267 (378)
T 2qdd_A          200 AWTPAIAVEVLNSVR-ARD-WI-------EQPC--Q-TLDQCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIK  267 (378)
T ss_dssp             CCCHHHHHHHHTSCC-CCC-EE-------ECCS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             CCCHHHHHHHHHHhC-CCc-EE-------EcCC--C-CHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEec
Confidence            999999999999998 998 76       2333  2 8999999999999999999999999999999987789999998


Q ss_pred             cchhcCccccc
Q 020428          233 RGALWNASIFS  243 (326)
Q Consensus       233 r~~l~~P~lf~  243 (326)
                      .+-++.++-+.
T Consensus       268 ~~~~GGi~~~~  278 (378)
T 2qdd_A          268 PNRVGGLTRAR  278 (378)
T ss_dssp             HHHHTSHHHHH
T ss_pred             ccccCCHHHHH
Confidence            87777665433

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=99.12  E-value=2.7e-09  Score=101.47  Aligned_cols=138  Identities=13%  Similarity=0.101  Sum_probs=116.8

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+++++.+.|+.+.+ ||+.|.|++||+..       |  ...+++...++++++|+++  ++++.++...+|+.+++++
T Consensus       148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~-------~--~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~  218 (382)
T 1rvk_A          148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPV-------S--WAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA  218 (382)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCTTS-------T--TCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEcCCcCcc-------c--cccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence            689999888887765 99999999998642       2  3458899999999999987  6889999988999999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +++.++++|+++|.       +. ..+.+++..+++++.+++||++.+.+.| +++++++++...+|.|++--.-.+..
T Consensus       219 ~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi  289 (382)
T 1rvk_A          219 LGRGLEKLGFDWIE-------EP-MDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGI  289 (382)
T ss_dssp             HHHHHHTTTCSEEE-------CC-SCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSH
T ss_pred             HHHHHHhcCCCEEe-------CC-CChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCH
Confidence            99999999999873       22 2356899999999999999999999999 99999999777799999965544443

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=99.11  E-value=4.9e-11  Score=106.35  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=82.2

Q ss_pred             EEEEecCCCCh------HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Q 020428          146 VTCKIRLLKSS------QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQR  219 (326)
Q Consensus       146 v~vK~r~g~~~------~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~  219 (326)
                      ..||++.||..      .++.++++.++++|+|.|++++++..+.. .+.+++.+++++ .+++||+++|||.+.+++.+
T Consensus        13 ~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~-~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~   90 (241)
T 1qo2_A           13 KVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIEN-SGENLPVLEKLS-EFAEHIQIGGGIRSLDYAEK   90 (241)
T ss_dssp             EEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHC-CCTTHHHHHHGG-GGGGGEEEESSCCSHHHHHH
T ss_pred             EEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEecccccccC-CchhHHHHHHHH-hcCCcEEEECCCCCHHHHHH
Confidence            56788887632      46899999999999999999988664332 356799999999 88999999999999999999


Q ss_pred             HHHhcCCcEEEeccchhcCcccccc
Q 020428          220 IKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       220 ~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ++ ..|||+|++|++++.+|+++.+
T Consensus        91 ~~-~~Gad~V~lg~~~l~~p~~~~~  114 (241)
T 1qo2_A           91 LR-KLGYRRQIVSSKVLEDPSFLKS  114 (241)
T ss_dssp             HH-HTTCCEEEECHHHHHCTTHHHH
T ss_pred             HH-HCCCCEEEECchHhhChHHHHH
Confidence            99 5899999999999999997654

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=99.11  E-value=5.6e-10  Score=106.12  Aligned_cols=141  Identities=13%  Similarity=0.060  Sum_probs=120.1

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      .|+..++++.+|+.+.+.++.+.+ |+..|.+++||                +++.-.+.++++|+++  ++++.++.+.
T Consensus       135 v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------~~~~d~~~v~avR~a~g~~~~l~vDan~  198 (378)
T 3eez_A          135 RPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------DVERDIARIRDVEDIREPGEIVLYDVNR  198 (378)
T ss_dssp             EEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHTTSCCTTCEEEEECTT
T ss_pred             EEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEECCC
Confidence            456667788899999988887655 99999999987                3677788999999998  6899999999


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.|+ +|.       +..   .+++.++++++.+++||++++.+.|++++.++++..++|.|++.
T Consensus       199 ~~~~~~a~~~~~~l~~~~i-~iE-------qP~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik  267 (378)
T 3eez_A          199 GWTRQQALRVMRATEDLHV-MFE-------QPG---ETLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIK  267 (378)
T ss_dssp             CCCHHHHHHHHHHTGGGTC-CEE-------CCS---SSHHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCHHHHHHHHHHhccCCe-EEe-------cCC---CCHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeC
Confidence            9999999999999999998 762       322   28999999999999999999999999999999977779999999


Q ss_pred             cchhcCccccc
Q 020428          233 RGALWNASIFS  243 (326)
Q Consensus       233 r~~l~~P~lf~  243 (326)
                      .+-.+.++-+.
T Consensus       268 ~~~~GGit~~~  278 (378)
T 3eez_A          268 LNRVGGLTRAA  278 (378)
T ss_dssp             HHHHTSHHHHH
T ss_pred             chhcCCHHHHH
Confidence            88777765443

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=99.10  E-value=9.5e-10  Score=104.11  Aligned_cols=141  Identities=9%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      .|+..++++.+++++.+.++.+.+ ||+.|.|++|+                +++...++++++|+++  ++++.++.+.
T Consensus       131 v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~  194 (369)
T 2p8b_A          131 FPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT----------------NVKEDVKRIEAVRERVGNDIAIRVDVNQ  194 (369)
T ss_dssp             EECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred             eeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            355567788899999888887765 99999999873                4788889999999987  6889999888


Q ss_pred             CCChHHHH-HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          153 LKSSQDTV-ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       153 g~~~~~~~-e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +|+.++++ ++++.++++|+++|.       +.. .+.+|+..+++++.+++||++.+.+++++++.++++...+|+|++
T Consensus       195 ~~~~~~a~~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~i  266 (369)
T 2p8b_A          195 GWKNSANTLTALRSLGHLNIDWIE-------QPV-IADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNI  266 (369)
T ss_dssp             TTBSHHHHHHHHHTSTTSCCSCEE-------CCB-CTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCcEEE-------CCC-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEe
Confidence            89999999 999999999999874       332 456899999999999999999999999999999998778999999


Q ss_pred             ccchhcCcc
Q 020428          232 ARGALWNAS  240 (326)
Q Consensus       232 Gr~~l~~P~  240 (326)
                      -.+-++..+
T Consensus       267 k~~~~GGit  275 (369)
T 2p8b_A          267 KLMKCGGIY  275 (369)
T ss_dssp             CHHHHTSHH
T ss_pred             ecchhCCHH
Confidence            876665554

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=99.08  E-value=2.5e-09  Score=102.35  Aligned_cols=145  Identities=11%  Similarity=0.113  Sum_probs=119.9

Q ss_pred             CcEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCCh-HHHHHHHHHHhhcc--cCcEEEEe
Q 020428           76 NHVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKP-ELIHDILTMLKRNL--DVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p-~~~~~iv~~v~~~~--~~pv~vK~  150 (326)
                      .|+-..+. +.+++++.+.|+.+.+ ||+.|.+++ ||.        |.    ++ +...++++++|+++  ++++.++.
T Consensus       134 vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv--------G~----~~~~~~~e~v~avr~a~G~d~~l~vDa  200 (401)
T 2hzg_A          134 KRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI--------GR----GTVAADADQIMAAREGLGPDGDLMVDV  200 (401)
T ss_dssp             BEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT--------TS----SCHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             eEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC--------CC----CHHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence            35554443 6789999988887765 999999996 664        22    45 77889999999987  68999999


Q ss_pred             cCCC--ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          151 RLLK--SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA-ALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       151 r~g~--~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~-~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      ..+|  +.++++++++.++++|+++|-       +.. .+.+|+..+++++ .+++||++.+.+.|+++++++++...+|
T Consensus       201 n~~~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d  272 (401)
T 2hzg_A          201 GQIFGEDVEAAAARLPTLDAAGVLWLE-------EPF-DAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYGRIG  272 (401)
T ss_dssp             TTTTTTCHHHHHTTHHHHHHTTCSEEE-------CCS-CTTCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHSCCS
T ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC-CccCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCCCCC
Confidence            9899  999999999999999999873       322 4568999999999 8999999999999999999999877899


Q ss_pred             EEEeccchhcCccc
Q 020428          228 SVMAARGALWNASI  241 (326)
Q Consensus       228 ~VmiGr~~l~~P~l  241 (326)
                      .|++-..-++.++-
T Consensus       273 ~v~ik~~~~GGit~  286 (401)
T 2hzg_A          273 FIQIDCGRIGGLGP  286 (401)
T ss_dssp             EEEECHHHHTSHHH
T ss_pred             EEEeCcchhCCHHH
Confidence            99998776666543

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=99.07  E-value=2.6e-09  Score=95.44  Aligned_cols=142  Identities=14%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             cEEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC-
Q 020428           77 HVVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL-  152 (326)
Q Consensus        77 p~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~-  152 (326)
                      ++-+|++|  .+.++.   .+++..|++-|-||              +..+++|+++.++.+..-+.. -+.+.+|.+- 
T Consensus        75 ~~pl~vGGGIrs~e~~---~~~l~~GadkVii~--------------t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~  137 (243)
T 4gj1_A           75 SVNLQVGGGIRSKEEV---KALLDCGVKRVVIG--------------SMAIKDATLCLEILKEFGSEAIVLALDTILKED  137 (243)
T ss_dssp             CSEEEEESSCCCHHHH---HHHHHTTCSEEEEC--------------TTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSS
T ss_pred             CCCeEeccccccHHHH---HHHHHcCCCEEEEc--------------cccccCCchHHHHHhcccCceEEEEEEEEeCCC
Confidence            45678865  344433   34555699988876              567899999999998885442 3334443322 


Q ss_pred             ------CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHH
Q 020428          153 ------LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       153 ------g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~  222 (326)
                            +|..   .+..++++.+++.|+..|.++...+++...|+ |+++++++.+.+ ++|||++||+.+.+|+.++. 
T Consensus       138 ~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~-d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l~-  215 (243)
T 4gj1_A          138 YVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGV-NVRLYKLIHEIFPNICIQASGGVASLKDLENLK-  215 (243)
T ss_dssp             EEEC--------CCBHHHHHHHHHTTTCCEEEEEETTC-----CC-CHHHHHHHHHHCTTSEEEEESCCCSHHHHHHTT-
T ss_pred             CEEEecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCC-CHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHHH-
Confidence                  3432   35789999999999999999999999887666 899999999886 69999999999999998863 


Q ss_pred             hcCCcEEEeccchhcC
Q 020428          223 AAGASSVMAARGALWN  238 (326)
Q Consensus       223 ~~Gad~VmiGr~~l~~  238 (326)
                       .+++||.+|++++.+
T Consensus       216 -~~~~gvivg~Al~~g  230 (243)
T 4gj1_A          216 -GICSGVIVGKALLDG  230 (243)
T ss_dssp             -TTCSEEEECHHHHTT
T ss_pred             -ccCchhehHHHHHCC
Confidence             579999999997654

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=99.07  E-value=3e-09  Score=101.43  Aligned_cols=139  Identities=9%  Similarity=0.080  Sum_probs=118.0

Q ss_pred             CcEEEEE-C-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEe
Q 020428           76 NHVVFQM-G-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl-~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~  150 (326)
                      .|+-..+ . +.+++++.+.++.+.+ ||..|.|++||                +++.-.++++++|+++  ++++.++.
T Consensus       139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------~~~~d~~~v~avR~a~g~d~~l~vDa  202 (389)
T 3ozy_A          139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------APRKDAANLRAMRQRVGADVEILVDA  202 (389)
T ss_dssp             EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence            4666666 4 6889999988887655 99999999987                4778888999999987  68999999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHH-HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIV-AALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~-~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +.+|+.++++++++.+++.|+++|.       +. ..+.+++.+++++ +.+++||++.+.+.|++++.++++...+|.|
T Consensus       203 n~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v  274 (389)
T 3ozy_A          203 NQSLGRHDALAMLRILDEAGCYWFE-------EP-LSIDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVL  274 (389)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCSEEE-------SC-SCTTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred             CCCcCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence            9999999999999999999999984       22 2456899999999 9999999999999999999999977779999


Q ss_pred             EeccchhcC
Q 020428          230 MAARGALWN  238 (326)
Q Consensus       230 miGr~~l~~  238 (326)
                      ++--+-.+.
T Consensus       275 ~ik~~~~GG  283 (389)
T 3ozy_A          275 QADASRAGG  283 (389)
T ss_dssp             CCCTTTSSC
T ss_pred             EeCccccCC
Confidence            987554444

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.05  E-value=3.1e-09  Score=94.90  Aligned_cols=155  Identities=14%  Similarity=0.090  Sum_probs=111.0

Q ss_pred             cEEEEECCCCH--HHHHHHHHHhhcCCCEEEEc--cCCCccccccccc-cc-----c--ccCChHHHHHHHHHHhhcccC
Q 020428           77 HVVFQMGTSDA--VRALTAAKMVCKDVAAIDIN--MGCPKSFSVSGGM-GA-----A--LLSKPELIHDILTMLKRNLDV  144 (326)
Q Consensus        77 p~~vQl~g~~~--~~~~~aa~~~~~~~d~idlN--~gcP~~~~~~~~~-G~-----~--l~~~p~~~~~iv~~v~~~~~~  144 (326)
                      .++..|.+.+|  +.+.+.++.+.+++|.|+++  ++||.-.    |. -.     +  --.+.....++++++++.+++
T Consensus         6 ~~~~~i~~~~~~~~~~~~~a~~~~~~ad~iel~~p~sdp~~D----G~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~   81 (248)
T 1geq_A            6 SLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIAD----GKTIQESHYRALKNGFKLREAFWIVKEFRRHSST   81 (248)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTTS----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEECCCCCCCCCC----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCC
Confidence            58889988777  58888888776558988888  6676541    10 00     0  002667778999999998889


Q ss_pred             cEEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeeccc---------------------C---------------C--
Q 020428          145 PVTCKIRLLKSS---QDTVELARRIEKTGVSALAVHGRKV---------------------A---------------D--  183 (326)
Q Consensus       145 pv~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~---------------------~---------------~--  183 (326)
                      ||.+....  ++   ....+.++.+.++|+|+|++|.-..                     .               .  
T Consensus        82 pv~~~~~~--~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~  159 (248)
T 1geq_A           82 PIVLMTYY--NPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGF  159 (248)
T ss_dssp             CEEEEECH--HHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSE
T ss_pred             CEEEEecc--chhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCe
Confidence            98876531  11   1125788888889999999874110                     0               0  


Q ss_pred             -------CCCC------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          184 -------RPRD------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       184 -------~~~~------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                             ...+      +..++.++++++.+++||++.|||++++++.+++ ..|||+|.+|++++..
T Consensus       160 i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~-~~Gad~vivGsai~~~  226 (248)
T 1geq_A          160 VYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLL-KEGANGVVVGSALVKI  226 (248)
T ss_dssp             EEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHHHH
T ss_pred             EEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHH-HcCCCEEEEcHHHHhh
Confidence                   0011      1235678889988899999999999999999998 5899999999998865

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=99.05  E-value=5e-09  Score=99.04  Aligned_cols=140  Identities=11%  Similarity=0.133  Sum_probs=116.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+-..+++.+++++.+.++.+.+ ||+.|.+++||+               +++...++++++|+++  ++++.++...+
T Consensus       131 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~d~~~v~avr~a~g~~~~l~vDan~~  195 (366)
T 1tkk_A          131 ETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQG  195 (366)
T ss_dssp             EBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred             eeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence            44456777789999888877655 999999998872               4677888999999987  68899999889


Q ss_pred             CChHHHHHHHHHHHH--cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          154 KSSQDTVELARRIEK--TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      |+.++++++++.+++  .|+++|-       +. ..+.+|+..+++++.+++||++.+.+++++++.++++...+|.|++
T Consensus       196 ~~~~~a~~~~~~l~~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  267 (366)
T 1tkk_A          196 WRPKEAVTAIRKMEDAGLGIELVE-------QP-VHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINI  267 (366)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEEE-------CC-SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             CCHHHHHHHHHHHhhcCCCceEEE-------CC-CCcccHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEe
Confidence            999999999999999  8888873       33 2456899999999999999999999999999999998777999999


Q ss_pred             ccchhcCc
Q 020428          232 ARGALWNA  239 (326)
Q Consensus       232 Gr~~l~~P  239 (326)
                      --.-.+..
T Consensus       268 k~~~~GGi  275 (366)
T 1tkk_A          268 KLMKAGGI  275 (366)
T ss_dssp             CHHHHTSH
T ss_pred             ehhhhcCH
Confidence            75544443

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=99.05  E-value=6e-09  Score=111.86  Aligned_cols=109  Identities=13%  Similarity=0.058  Sum_probs=85.5

Q ss_pred             CChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC--------CCCcCCHHHHHH
Q 020428          126 SKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR--------PRDPAKWGEIAD  196 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~--------~~~~~~~~~i~~  196 (326)
                      .+++.+.++++.+++.. ++||.+|+-...   ...+.|+.+.++|+|+|+|.|......        ..+.+....+.+
T Consensus      1010 ~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~---gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~e 1086 (1520)
T 1ofd_A         1010 YSIEDLAQLIYDLHQINPEAQVSVKLVAEI---GIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTE 1086 (1520)
T ss_dssp             SSHHHHHHHHHHHHHHCTTSEEEEEEECST---THHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEEecCCC---ChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHH
Confidence            45677889999999988 899999986432   334578899999999999988753321        112233456666


Q ss_pred             HHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          197 IVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       197 i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.+.+       ++|||+.|||.|..|+.+++ ..||++|++||++|..
T Consensus      1087 v~~al~~~glr~~IpVIAdGGIrtG~DVakAL-aLGAdaV~iGTafL~a 1134 (1520)
T 1ofd_A         1087 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAA-LMGAEEYGFGSIAMIA 1134 (1520)
T ss_dssp             HHHHHHHTTCGGGCEEEEESSCCSHHHHHHHH-HTTCSEEECSHHHHHH
T ss_pred             HHHHHHhcCCCCCceEEEECCCCCHHHHHHHH-HcCCCeeEEcHHHHHH
Confidence            66644       69999999999999999999 6999999999999864

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=99.02  E-value=4.9e-09  Score=100.04  Aligned_cols=133  Identities=8%  Similarity=0.103  Sum_probs=113.0

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      +.+++++.+.|+.+.+ ||+.|.|+.|+.               .++...++++++|+++  ++++.++...+|+.++++
T Consensus       147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~---------------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~  211 (391)
T 2qgy_A          147 KKDTNDYLRQIEKFYGKKYGGIKIYPMLD---------------SLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTK  211 (391)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSCEEECCCCS---------------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHH
Confidence            5789999988887765 999999997731               1688889999999987  689999999899999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      ++++.++++|+++|.       +. ..+.+|+..+++++.+++||++.+.+.|+++++++++...+|.|++-..-.+..
T Consensus       212 ~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi  282 (391)
T 2qgy_A          212 SFLKEVSSFNPYWIE-------EP-VDGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGL  282 (391)
T ss_dssp             HHHHHHGGGCCSEEE-------CS-SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCH
T ss_pred             HHHHHHHhcCCCeEe-------CC-CChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCH
Confidence            999999999999873       22 235689999999999999999999999999999999777799999976555544

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=99.02  E-value=5.4e-09  Score=99.00  Aligned_cols=137  Identities=12%  Similarity=0.046  Sum_probs=115.9

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      .|+...+.+.+++++.+.++.+.+ ||+.|.|++|.                +++...++++++|+++  ++++.++...
T Consensus       136 vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~  199 (371)
T 2ps2_A          136 LPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG----------------EPVTDAKRITAALANQQPDEFFIVDANG  199 (371)
T ss_dssp             EEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS----------------CHHHHHHHHHHHTTTCCTTCEEEEECTT
T ss_pred             eEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence            456666777899999998888766 99999999873                3778889999999988  6889999888


Q ss_pred             CCChHHHHHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          153 LKSSQDTVELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       153 g~~~~~~~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +|+.++++++++.+ ++.|+ +|.       +..  + +++..+++++.+++||++.+.++++++++++++...+|.|++
T Consensus       200 ~~~~~~a~~~~~~l~~~~~i-~iE-------~P~--~-~~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~i  268 (371)
T 2ps2_A          200 KLSVETALRLLRLLPHGLDF-ALE-------APC--A-TWRECISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDL  268 (371)
T ss_dssp             BCCHHHHHHHHHHSCTTCCC-EEE-------CCB--S-SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             CcCHHHHHHHHHHHHhhcCC-cCc-------CCc--C-CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEe
Confidence            89999999999999 99999 762       222  2 899999999999999999999999999999998777999999


Q ss_pred             ccchhcCc
Q 020428          232 ARGALWNA  239 (326)
Q Consensus       232 Gr~~l~~P  239 (326)
                      --.-.+..
T Consensus       269 k~~~~GGi  276 (371)
T 2ps2_A          269 KISKAGGL  276 (371)
T ss_dssp             EHHHHTSH
T ss_pred             chhhcCCH
Confidence            76555444

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=99.02  E-value=9.1e-09  Score=97.35  Aligned_cols=136  Identities=10%  Similarity=0.178  Sum_probs=113.0

Q ss_pred             EECCCCHHHHHHHHHHh-h-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCCh
Q 020428           81 QMGTSDAVRALTAAKMV-C-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSS  156 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~-~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~  156 (326)
                      -+.+.+++.+.+.++.+ . .||+.|.|++||+               +++...++++++|+++  ++++.++...+|+.
T Consensus       137 ~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~  201 (370)
T 1nu5_A          137 TLASGDTARDIDSALEMIETRRHNRFKVKLGAR---------------TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDE  201 (370)
T ss_dssp             EECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGCEEEEECTTCCCH
T ss_pred             EecCCCHHHHHHHHHHHHHhCCccEEEEecCCC---------------ChHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence            34556888888777765 4 5999999999875               3567788899999877  58899998889999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++++++++.+++.|+++|.       +. ..+.+|+..+++++.+++||++.+.+.+++++.++++...+|.|++--.-.
T Consensus       202 ~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~  273 (370)
T 1nu5_A          202 QTASIWIPRLEEAGVELVE-------QP-VPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNM  273 (370)
T ss_dssp             HHHHHHHHHHHHHTCCEEE-------CC-SCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred             HHHHHHHHHHHhcCcceEe-------CC-CCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhc
Confidence            9999999999999999873       22 245689999999999999999999999999999999777799999975555


Q ss_pred             cCc
Q 020428          237 WNA  239 (326)
Q Consensus       237 ~~P  239 (326)
                      +..
T Consensus       274 GGi  276 (370)
T 1nu5_A          274 GGI  276 (370)
T ss_dssp             TSH
T ss_pred             CCH
Confidence            444

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.02  E-value=3.5e-09  Score=113.39  Aligned_cols=108  Identities=15%  Similarity=0.115  Sum_probs=85.1

Q ss_pred             CChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCC--------CCcCCHHHHHH
Q 020428          126 SKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP--------RDPAKWGEIAD  196 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~--------~~~~~~~~i~~  196 (326)
                      .+++.+.++++.+++.. ++||.+|+-...   ...+.|+.+.++|+|+|+|.|.......        .+.+....+.+
T Consensus       975 ~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~---gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~e 1051 (1479)
T 1ea0_A          975 YSIEDLAQLIYDLKQINPDAKVTVKLVSRS---GIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSE 1051 (1479)
T ss_dssp             SSHHHHHHHHHHHHHHCTTCEEEEEEECCT---THHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEEEcCCC---ChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHH
Confidence            34677889999999988 899999996532   3345688999999999999877533211        12233456677


Q ss_pred             HHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          197 IVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       197 i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.+       ++|||+.|||.|..|+.+++ ..||++|++||++|.
T Consensus      1052 v~~al~~~glr~~VpVIAdGGIrtG~DVakAL-aLGAdaV~iGTafL~ 1098 (1479)
T 1ea0_A         1052 VHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAA-MLGAEEFGIGTASLI 1098 (1479)
T ss_dssp             HHHHHHTTTCTTTSEEEEESSCCSHHHHHHHH-HTTCSEEECCHHHHH
T ss_pred             HHHHHHHcCCCCCceEEEECCCCCHHHHHHHH-HcCCCeeeEcHHHHH
Confidence            76654       79999999999999999999 699999999999986

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=99.02  E-value=5.5e-09  Score=100.23  Aligned_cols=139  Identities=12%  Similarity=0.198  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEcc------CCCcc-cccccccccccc-CChHHHHHHHHHHhhcc--cCcEEEEecCCC
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINM------GCPKS-FSVSGGMGAALL-SKPELIHDILTMLKRNL--DVPVTCKIRLLK  154 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~------gcP~~-~~~~~~~G~~l~-~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~  154 (326)
                      +++++.+.|+.+.+ ||+.|.|+.      |++.. ...+..+|+... ++++...++++++|+++  ++++.+...-+|
T Consensus       150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~  229 (410)
T 2gl5_A          150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLL  229 (410)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence            89999888887765 999999996      65210 111235666654 57788899999999987  688999988889


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.++++++++.++++|+++|.       +. ..+.+++..+++++.+++||++.+.+.|+++++++++...+|.|++-
T Consensus       230 ~~~~ai~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  299 (410)
T 2gl5_A          230 GTNSAIQFAKAIEKYRIFLYE-------EP-IHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPD  299 (410)
T ss_dssp             CHHHHHHHHHHHGGGCEEEEE-------CS-SCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCC
T ss_pred             CHHHHHHHHHHHHhcCCCeEE-------CC-CChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence            999999999999999998874       22 24568999999999999999999999999999999976668999875

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=99.01  E-value=8.2e-10  Score=122.57  Aligned_cols=193  Identities=12%  Similarity=0.034  Sum_probs=130.3

Q ss_pred             CCceEEcccc-CCCCHHHHHHHHHcCC-CeEEe-CceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            4 QNKLVLAPMV-RVGTLPFRLLAAQYGA-DITYG-EEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         4 ~~~iilAPM~-g~t~~~fr~~~~~~G~-~l~~t-e~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +.||++|||+ ..++..|..++.+.|. |.+.+ .+.+++.+....+..                   +..-+.+.|+.|
T Consensus       589 ~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~-------------------~~~t~~~~~~gv  649 (2051)
T 2uv8_G          589 RPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSV-------------------VSQIEKGSTFGI  649 (2051)
T ss_dssp             SCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHH-------------------HHHSCTTCCEEE
T ss_pred             ccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHH-------------------HHhcCCCCceEE
Confidence            4699999999 4559999999999986 66533 334444442211110                   001122358999


Q ss_pred             EECCCCHH----HHHHHHHHhh-cCCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           81 QMGTSDAV----RALTAAKMVC-KDVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        81 Ql~g~~~~----~~~~aa~~~~-~~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      ++.-.+|.    ++ +..+.+. +|+..  |.+..|-|..               +...++++.+    ++++....   
T Consensus       650 N~~~~~~~~~~~~~-~~~~~~~~~gv~i~~v~~~ag~p~~---------------~~~~~~i~~l----G~~vi~~~---  706 (2051)
T 2uv8_G          650 NLIYVNPFMLQWGI-PLIKELRSKGYPIQFLTIGAGVPSL---------------EVASEYIETL----GLKYLGLK---  706 (2051)
T ss_dssp             EEETTCTTHHHHHH-HHHHHHHHTTCSEEEEEEESSCCCH---------------HHHHHHHHHS----CCSCEEEC---
T ss_pred             EEeecChhhhhhhH-HHHHHHHHcCCCcceEEecCCCCch---------------hhHHHHHHHc----CCEEEEec---
Confidence            98655543    23 4444444 47655  8988887743               2344444444    77766533   


Q ss_pred             CChHHHHHHHHHHHHcCCcEE---EEeecccCCCCCC----cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH----
Q 020428          154 KSSQDTVELARRIEKTGVSAL---AVHGRKVADRPRD----PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT----  222 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i---~vh~r~~~~~~~~----~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~----  222 (326)
                      ......+..+...+++|+|++   .+.|....++.+.    ...+.++.++++.++||||+.|||.+.+++..+|.    
T Consensus       707 ~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~  786 (2051)
T 2uv8_G          707 PGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWS  786 (2051)
T ss_dssp             CCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGG
T ss_pred             CchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccc
Confidence            234577788899999999993   5567776655321    12244578999999999999999999999999993    


Q ss_pred             ------hcCCcEEEeccchhcC
Q 020428          223 ------AAGASSVMAARGALWN  238 (326)
Q Consensus       223 ------~~Gad~VmiGr~~l~~  238 (326)
                            ..|||||++|+.++..
T Consensus       787 ~~~g~~~lgadGv~~GTrf~~t  808 (2051)
T 2uv8_G          787 TKFDYPPMPFDGFLFGSRVMIA  808 (2051)
T ss_dssp             GTTTCCCCCCSCEECSGGGTTS
T ss_pred             cccCccCCCCceeeechHHHhC
Confidence                  4799999999999864

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=99.00  E-value=1.6e-09  Score=94.01  Aligned_cols=137  Identities=15%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      .|+++.+.+.+++++.+.++.+.+ |++.|+++++||..                  .+.++.+++.++..+.+....-.
T Consensus        10 ~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~------------------~~~i~~ir~~~~~~~~ig~~~v~   71 (205)
T 1wa3_A           10 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA------------------DTVIKELSFLKEKGAIIGAGTVT   71 (205)
T ss_dssp             HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHTHHHHHTTCEEEEESCC
T ss_pred             CCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHHHCCCCcEEEecccC
Confidence            379999999999999999998877 89999999988742                  23345555443211222221111


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeeccc-------------------C-C---------------CCCCcCCHHHHHHHHH
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKV-------------------A-D---------------RPRDPAKWGEIADIVA  199 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~-------------------~-~---------------~~~~~~~~~~i~~i~~  199 (326)
                      +.    +.++.+.++|+|+| +++...                   . .               .+......+.++++++
T Consensus        72 ~~----~~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~  146 (205)
T 1wa3_A           72 SV----EQCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKG  146 (205)
T ss_dssp             SH----HHHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHT
T ss_pred             CH----HHHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHH
Confidence            22    22455555677776 443221                   0 0               0000123567788888


Q ss_pred             hc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          200 AL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       200 ~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .+ ++||++.|||+ .+++.+++ ..|+|+|.+||+++.
T Consensus       147 ~~~~~pvia~GGI~-~~~~~~~~-~~Ga~~v~vGs~i~~  183 (205)
T 1wa3_A          147 PFPNVKFVPTGGVN-LDNVCEWF-KAGVLAVGVGSALVK  183 (205)
T ss_dssp             TCTTCEEEEBSSCC-TTTHHHHH-HHTCSCEEECHHHHC
T ss_pred             hCCCCcEEEcCCCC-HHHHHHHH-HCCCCEEEECccccC
Confidence            77 89999999996 78999999 699999999999876

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=98.95  E-value=3.6e-08  Score=90.20  Aligned_cols=51  Identities=20%  Similarity=0.165  Sum_probs=45.2

Q ss_pred             cCCHHHHHHHHHhcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          188 PAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       188 ~~~~~~i~~i~~~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      ..+++.++++++.+++||+  +.|||.|++|+.+++ ..|||+|++|++++..+
T Consensus       193 ~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~-~~GAdgVlVGsai~~a~  245 (297)
T 4adt_A          193 RAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCM-QLGMDGVFVGSGIFESE  245 (297)
T ss_dssp             TCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHH-HTTCSCEEESHHHHTSS
T ss_pred             CCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHH-HcCCCEEEEhHHHHcCC
Confidence            4568889999998899987  999999999999999 58999999999988643

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=98.95  E-value=1.4e-08  Score=93.23  Aligned_cols=151  Identities=17%  Similarity=0.236  Sum_probs=97.3

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      +.|+++.+..      .+.++.+.+ |+++|+++.++|...  +...|..+.+.++.    ++++++.+++|+.++.+.+
T Consensus        21 ~~~~i~~~~~------~~~a~~~~~~Ga~~i~~~e~v~~~~--~~~~G~~~~~~~~~----i~~i~~~~~~Pvi~~~~~~   88 (297)
T 2zbt_A           21 KGGVIMDVTT------PEQAVIAEEAGAVAVMALERVPADI--RAQGGVARMSDPKI----IKEIMAAVSIPVMAKVRIG   88 (297)
T ss_dssp             TTEEEEEESS------HHHHHHHHHHTCSEEEECSSCHHHH--HHTTCCCCCCCHHH----HHHHHTTCSSCEEEEEETT
T ss_pred             hCCeeeeech------HHHHHHHHHCCCcEEEeccccchHH--HhhcCCccCCCHHH----HHHHHHhcCCCeEEEeccC
Confidence            3478877654      344544545 999999987655432  12235556677765    4556677788988876543


Q ss_pred             C------------------------C------h----------HHHHHHHHHHHHcCCcEEEEeecc-------------
Q 020428          154 K------------------------S------S----------QDTVELARRIEKTGVSALAVHGRK-------------  180 (326)
Q Consensus       154 ~------------------------~------~----------~~~~e~a~~l~~~G~d~i~vh~r~-------------  180 (326)
                      +                        +      .          ..+.+.+..+.++|+|+|.+||-.             
T Consensus        89 ~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~  168 (297)
T 2zbt_A           89 HFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHAR  168 (297)
T ss_dssp             CHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHH
Confidence            2                        0      0          011222333455566666555310             


Q ss_pred             -------------cCCC----CCCcCCHHHHHHHHHhcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          181 -------------VADR----PRDPAKWGEIADIVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       181 -------------~~~~----~~~~~~~~~i~~i~~~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                                   ....    ...+.+++.++++++.+++||+  +.|||.|++++.+++ ..|||+|++||+++..
T Consensus       169 ~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~-~aGadgvvvGsai~~~  244 (297)
T 2zbt_A          169 TMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMM-HLGMDGVFVGSGIFKS  244 (297)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHH-HTTCSEEEECGGGGGS
T ss_pred             HHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHH-HcCCCEEEEchHHhCC
Confidence                         0000    0023467889999988899998  999999999999999 5899999999998853

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=98.95  E-value=6.7e-09  Score=99.10  Aligned_cols=141  Identities=11%  Similarity=0.128  Sum_probs=114.7

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccc--cccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSF--SVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~--~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~  158 (326)
                      +.+++++.++|+.+.+ ||+.|.|+.||+..-  .....||+...++++...++++++|+++  ++++.+...-+|+.++
T Consensus       135 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~  214 (392)
T 2poz_A          135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDE  214 (392)
T ss_dssp             CCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence            3589999888887665 999999999875320  0012345555677888999999999987  6889998888899999


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++++.+++.|+++|-       +. ..+.+++..+++++.+++||++.+.+.|+++++++++...+|.|++-
T Consensus       215 a~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik  280 (392)
T 2poz_A          215 TIRFCRKIGELDICFVE-------EP-CDPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQPD  280 (392)
T ss_dssp             HHHHHHHHGGGCEEEEE-------CC-SCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECCC
T ss_pred             HHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence            99999999999998873       22 24568999999999999999999999999999999976668999874

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=98.93  E-value=9.3e-10  Score=98.51  Aligned_cols=86  Identities=17%  Similarity=0.319  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++++.++++|+|+|+++..+.... ..+.+++.++++++.+++||+++|||.+++++.+++ ..|||+|++|++++
T Consensus        30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~-~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~-~~Gad~V~lg~~~l  107 (253)
T 1thf_D           30 GDPVELGKFYSEIGIDELVFLDITASVE-KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELI-LRGADKVSINTAAV  107 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEESSCSSS-HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HTTCSEEEESHHHH
T ss_pred             cCHHHHHHHHHHcCCCEEEEECCchhhc-CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEChHHH
Confidence            4678999999999999999998765422 234568889999999999999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|+++.+
T Consensus       108 ~~p~~~~~  115 (253)
T 1thf_D          108 ENPSLITQ  115 (253)
T ss_dssp             HCTHHHHH
T ss_pred             hChHHHHH
Confidence            99987654

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=98.92  E-value=1.1e-09  Score=125.41  Aligned_cols=194  Identities=13%  Similarity=0.116  Sum_probs=128.9

Q ss_pred             CCceEEccccC-CCCHHHHHHHHHcCC-CeE-EeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            4 QNKLVLAPMVR-VGTLPFRLLAAQYGA-DIT-YGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         4 ~~~iilAPM~g-~t~~~fr~~~~~~G~-~l~-~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +.|||+|||++ .++..+...+.+.|. |.+ ...+.+++.+...-+.                   ++..-..+.|+.|
T Consensus       427 ~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~-------------------~r~~~~~~~p~~v  487 (3089)
T 3zen_D          427 RSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAE-------------------LETLLEPGRAIQF  487 (3089)
T ss_dssp             SCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHH-------------------HHHHSCTTCCCEE
T ss_pred             CCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHH-------------------HHHhcCCCCceee
Confidence            67999999995 569999999999986 666 2334344443221110                   0000112458999


Q ss_pred             EECCCCHHHH------HHHHHHhhc-C--CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE-Ee
Q 020428           81 QMGTSDAVRA------LTAAKMVCK-D--VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC-KI  150 (326)
Q Consensus        81 Ql~g~~~~~~------~~aa~~~~~-~--~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v-K~  150 (326)
                      ++.-.+|..+      .+..+.+.+ |  +|+|-+.+|.|.               ++...++++.+++. ++.+.. +.
T Consensus       488 Nl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~---------------~ee~~~~i~~l~~~-Gi~~i~~~~  551 (3089)
T 3zen_D          488 NTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPD---------------LEEAVDIIDELNEV-GISHVVFKP  551 (3089)
T ss_dssp             EEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCC---------------HHHHHHHHTSTTHH-HHCSEEECC
T ss_pred             chhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCc---------------hhHhHHHHHHHHHc-CCEEEEEeC
Confidence            9987777531      233444444 7  788999888873               24555666666654 444433 55


Q ss_pred             cCCCChHHHHHHHHHHHHcCCc------EEEEeecccCCCCCCcCCHHHH----HHHHHhcCCcEEEeCCCCCHHHHHHH
Q 020428          151 RLLKSSQDTVELARRIEKTGVS------ALAVHGRKVADRPRDPAKWGEI----ADIVAALSIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d------~i~vh~r~~~~~~~~~~~~~~i----~~i~~~~~iPVi~nGgI~s~~d~~~~  220 (326)
                      .       +.+.++.+.+.|+|      .|++.|-+..++........++    .++++.+++|||+.|||.|++++..+
T Consensus       552 ~-------t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaa  624 (3089)
T 3zen_D          552 G-------TVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEY  624 (3089)
T ss_dssp             C-------SHHHHHHHHHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHH
T ss_pred             C-------CHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHH
Confidence            2       24456666777777      8999988876654332223455    67777789999999999999999998


Q ss_pred             HH----------hcCCcEEEeccchhcCc
Q 020428          221 KT----------AAGASSVMAARGALWNA  239 (326)
Q Consensus       221 l~----------~~Gad~VmiGr~~l~~P  239 (326)
                      +.          ..|||||++|+.++..+
T Consensus       625 l~g~ws~~~~~p~lGAdGV~vGTrfl~t~  653 (3089)
T 3zen_D          625 LSGRWAEVHGYPLMPIDGILVGTAAMATL  653 (3089)
T ss_dssp             HHTGGGGTTTCCCCCCSEEECSSTTTTCT
T ss_pred             hccccccccCccCCCCCEEEecHHHHhCc
Confidence            81          37999999999999644

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=98.92  E-value=1.3e-08  Score=97.38  Aligned_cols=137  Identities=9%  Similarity=0.106  Sum_probs=110.8

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEcc------CCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCCh
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINM------GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSS  156 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~------gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~  156 (326)
                      +++++.+.|+.+.+ ||+.|.|+.      |++...   ...|....++++...++++++|+++  ++++.+...-+|+.
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~  222 (403)
T 2ox4_A          146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV---FLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDL  222 (403)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC---CCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC---cccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH
Confidence            89999888887765 999999996      664221   1222222346678889999999987  68899998888999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++++++++.++++|+++|-       +. ..+.+|+..+++++.+++||++.+.+.|+++++++++...+|.|++--
T Consensus       223 ~~ai~~~~~l~~~~i~~iE-------~P-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~  291 (403)
T 2ox4_A          223 VSAIQFAKAIEEFNIFFYE-------EI-NTPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDL  291 (403)
T ss_dssp             HHHHHHHHHHGGGCEEEEE-------CC-SCTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCH
T ss_pred             HHHHHHHHHHHhhCCCEEe-------CC-CChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence            9999999999999998873       22 245689999999999999999999999999999999766689998853

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=98.92  E-value=2.2e-08  Score=95.67  Aligned_cols=136  Identities=15%  Similarity=0.187  Sum_probs=112.4

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+...++..+++.+.+.|+.+.+ ||+.|.++.|+                +++...++++++|+++  ++++.+...-+
T Consensus       136 p~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~e~v~avR~a~g~d~~l~vDan~~  199 (397)
T 2qde_A          136 PLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGG----------------PLKADIAMVAEVRRAVGDDVDLFIDINGA  199 (397)
T ss_dssp             EBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECCS----------------CHHHHHHHHHHHHHHHCTTSCEEEECTTC
T ss_pred             ceEEECCCCCHHHHHHHHHHHHHhhhhheeecccC----------------CHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence            44434443689999888887765 99999998773                5677888999999987  68899998888


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |+.++++++++.+++.|+++|-       +. ..+.+++..+++++.+++||++.+.+.|+++++++++...+|.|++--
T Consensus       200 ~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~  271 (397)
T 2qde_A          200 WTYDQALTTIRALEKYNLSKIE-------QP-LPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKT  271 (397)
T ss_dssp             CCHHHHHHHHHHHGGGCCSCEE-------CC-SCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred             CCHHHHHHHHHHHHhCCCCEEE-------CC-CChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence            9999999999999999999873       22 245689999999999999999999999999999999777799999854


Q ss_pred             chh
Q 020428          234 GAL  236 (326)
Q Consensus       234 ~~l  236 (326)
                      .-.
T Consensus       272 ~~~  274 (397)
T 2qde_A          272 QKA  274 (397)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            433

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=98.91  E-value=1.7e-08  Score=96.29  Aligned_cols=125  Identities=12%  Similarity=0.152  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.++|+.+.+ ||+.|.|++|-               .+++...++++++|+++  ++++.+...-+|+.++++++
T Consensus       162 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~  226 (393)
T 2og9_A          162 PIDQLMVNASASIERGIGGIKLKVGQ---------------PDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRM  226 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEECCC---------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHH
Confidence            89999988887765 99999998762               24788889999999987  68999998888999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.++++++++++...+|.|++--
T Consensus       227 ~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~  289 (393)
T 2og9_A          227 CRIFEPFNLVWIE-------EP-LDAYDHEGHAALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDA  289 (393)
T ss_dssp             HHHHGGGCCSCEE-------CC-SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred             HHHHHhhCCCEEE-------CC-CCcccHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCc
Confidence            9999999999873       22 245689999999999999999999999999999999766689998853

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=98.91  E-value=3.2e-08  Score=95.59  Aligned_cols=142  Identities=15%  Similarity=0.196  Sum_probs=115.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccc-cccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGA-ALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~-~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      .+++++.+.++...+ ||..|.++.|||....    .|. ....+++...++++++|+++  ++++.+...-+|+.++++
T Consensus       145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~----~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~  220 (433)
T 3rcy_A          145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR----GGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAI  220 (433)
T ss_dssp             TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT----CCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc----cCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHH
Confidence            688988888877654 9999999999996532    222 12335677888999999987  678888888889999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ++++.++++|+++|.       + +..+.+++.++++++.+++||++.+.+.|+.++.++++...+|.|++--+-.+.
T Consensus       221 ~~~~~Le~~~i~~iE-------e-P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GG  290 (433)
T 3rcy_A          221 RLGQAIEPYSPLWYE-------E-PVPPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGG  290 (433)
T ss_dssp             HHHHHHGGGCCSEEE-------C-CSCTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTH
T ss_pred             HHHHHhhhcCCCEEE-------C-CCChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCC
Confidence            999999999999984       2 234558999999999999999999999999999999976668999887554433

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=98.89  E-value=3.1e-08  Score=95.05  Aligned_cols=143  Identities=9%  Similarity=0.026  Sum_probs=116.4

Q ss_pred             cEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+-... ...+++.+.+.++.+.+ ||+.|.|++|++-.    +  |+   ++++...+.++++|+++  ++++.+....
T Consensus       169 ~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~----d--g~---~~~~~die~v~avReavG~d~~L~vDaN~  239 (412)
T 3stp_A          169 PVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK----D--GM---PGMRENLKRVEAVREVIGYDNDLMLECYM  239 (412)
T ss_dssp             EEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG----G--HH---HHHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc----c--cc---chHHHHHHHHHHHHHHcCCCCeEEEECCC
Confidence            454443 45689999998888766 99999999988521    1  22   35678888999999987  6889999988


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.|++++.++++...+|.|++-
T Consensus       240 ~~~~~~Ai~~~~~Le~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik  311 (412)
T 3stp_A          240 GWNLDYAKRMLPKLAPYEPRWLE-------EP-VIADDVAGYAELNAMNIVPISGGEHEFSVIGCAELINRKAVSVLQYD  311 (412)
T ss_dssp             CSCHHHHHHHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecC
Confidence            99999999999999999999984       22 24558999999999999999999999999999999976668999876


Q ss_pred             cchh
Q 020428          233 RGAL  236 (326)
Q Consensus       233 r~~l  236 (326)
                      -+-.
T Consensus       312 ~~~~  315 (412)
T 3stp_A          312 TNRV  315 (412)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            4433

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=98.89  E-value=5.4e-08  Score=92.73  Aligned_cols=123  Identities=11%  Similarity=0.040  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.|+.+.+ ||+.|.|++|+               .+++...++++++|+++  ++++.+...-+|+.++++++
T Consensus       145 ~~~~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~  209 (389)
T 2oz8_A          145 DDDAFVSLFSHAASIGYSAFKIKVGH---------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTK  209 (389)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCC---------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEccCC---------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHH
Confidence            78989888887665 99999999886               24567889999999988  68899988888999999999


Q ss_pred             HHHHHH--cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          163 ARRIEK--TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       163 a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+++  .|+++|-       +. ..+.+++..+++++.+ ++||++.+.+ ++++++++++...+|.|++.
T Consensus       210 ~~~l~~~g~~i~~iE-------qP-~~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik  273 (389)
T 2oz8_A          210 LVAIREAGHDLLWVE-------DP-ILRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH  273 (389)
T ss_dssp             HHHHHHTTCCCSEEE-------SC-BCTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHhcCCCceEEe-------CC-CCCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence            999999  7787762       22 2355899999999999 9999999999 99999999976679999997

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.88  E-value=1.5e-09  Score=97.13  Aligned_cols=86  Identities=20%  Similarity=0.310  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++++.++++|+|.|++++.+.... ..+.+++.++++++.+++||+++|||.+.+++++++ ..|||+|++|++++
T Consensus        31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~-~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~-~~Gad~V~lg~~~l  108 (252)
T 1ka9_F           31 GDPVEAARAYDEAGADELVFLDISATHE-ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLL-LSGADKVSVNSAAV  108 (252)
T ss_dssp             TCHHHHHHHHHHHTCSCEEEEECCSSTT-CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HHTCSEEEECHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCcccc-CccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHH-HcCCCEEEEChHHH
Confidence            4788999999999999999997765432 234467889999999999999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|+++.+
T Consensus       109 ~~p~~~~~  116 (252)
T 1ka9_F          109 RRPELIRE  116 (252)
T ss_dssp             HCTHHHHH
T ss_pred             hCcHHHHH
Confidence            99987654

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=98.88  E-value=6.2e-08  Score=87.68  Aligned_cols=155  Identities=13%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             cEEEEECCCCH--HHHHHHHHHhhc-CCCEEEEccC--CCcc---ccc-----cccccccccCChHHHHHHHHHHhhc-c
Q 020428           77 HVVFQMGTSDA--VRALTAAKMVCK-DVAAIDINMG--CPKS---FSV-----SGGMGAALLSKPELIHDILTMLKRN-L  142 (326)
Q Consensus        77 p~~vQl~g~~~--~~~~~aa~~~~~-~~d~idlN~g--cP~~---~~~-----~~~~G~~l~~~p~~~~~iv~~v~~~-~  142 (326)
                      .++.-|...+|  +...+.++.+.+ |+|.|+|+.-  -|.-   .+.     .-..|    -+.+...++++++++. +
T Consensus        18 ~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G----~~~~~~~~~v~~ir~~~~   93 (268)
T 1qop_A           18 AFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAG----VTPAQCFEMLAIIREKHP   93 (268)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCS
T ss_pred             eEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCC
Confidence            46666655565  888888888877 8999999652  1210   000     00111    1455677899999988 7


Q ss_pred             cCcEEEEecCCCChH---HHHHHHHHHHHcCCcEEEEeecccC-------------------------------------
Q 020428          143 DVPVTCKIRLLKSSQ---DTVELARRIEKTGVSALAVHGRKVA-------------------------------------  182 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~---~~~e~a~~l~~~G~d~i~vh~r~~~-------------------------------------  182 (326)
                      ++|+.+=.  .+++-   ...++++.+.++|+|++++|.-..+                                     
T Consensus        94 ~~Pv~lm~--y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~  171 (268)
T 1qop_A           94 TIPIGLLM--YANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGR  171 (268)
T ss_dssp             SSCEEEEE--CHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCC
T ss_pred             CCCEEEEE--cccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCC
Confidence            89976611  11111   1357788888888888887533210                                     


Q ss_pred             --------CCCCC------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          183 --------DRPRD------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       183 --------~~~~~------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                              ..++|      +...+.++++++.+++||++.|||.|++++.+++ ..|||+|++|+++...
T Consensus       172 g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~-~agAD~vVVGSai~~~  240 (268)
T 1qop_A          172 GYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAV-RAGAAGAISGSAIVKI  240 (268)
T ss_dssp             SCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHHH
T ss_pred             CcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHH-HcCCCEEEEChHHhhh
Confidence                    00111      2236889999998899999999999999999988 5899999999997753

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=98.87  E-value=1.6e-08  Score=91.08  Aligned_cols=154  Identities=14%  Similarity=0.199  Sum_probs=100.0

Q ss_pred             cEEEEECCCCH--HHHHHHHHHhhc-CCCEEEEccCCCcccccc----------ccccccccCChHHHHHHHHHHhhccc
Q 020428           77 HVVFQMGTSDA--VRALTAAKMVCK-DVAAIDINMGCPKSFSVS----------GGMGAALLSKPELIHDILTMLKRNLD  143 (326)
Q Consensus        77 p~~vQl~g~~~--~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----------~~~G~~l~~~p~~~~~iv~~v~~~~~  143 (326)
                      .++.-|...+|  +.+.+.++.+.+ |+|.|+++..++.|....          -..|    -+++...++++++++.++
T Consensus        19 ~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g----~~~~~~~~~i~~ir~~~~   94 (262)
T 1rd5_A           19 AFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASG----TTMDAVLEMLREVTPELS   94 (262)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTT----CCHHHHHHHHHHHGGGCS
T ss_pred             eEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCC
Confidence            46666655554  788888888876 899999987664332110          0111    267888899999999889


Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec--------------------------cc----------------
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR--------------------------KV----------------  181 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r--------------------------~~----------------  181 (326)
                      +|+.+-.+.  ++.. ....+.+.++|+|+++++.-                          +.                
T Consensus        95 ~Pv~~m~~~--~~~~-~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~  171 (262)
T 1rd5_A           95 CPVVLLSYY--KPIM-FRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVY  171 (262)
T ss_dssp             SCEEEECCS--HHHH-SCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEE
T ss_pred             CCEEEEecC--cHHH-HHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEE
Confidence            998874321  1100 00011144455555544321                          00                


Q ss_pred             ---CCCCCC------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          182 ---ADRPRD------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       182 ---~~~~~~------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                         ...++|      +...+.++++++.+++||++.|||.|++++.+++ ..|||+|++|+++...
T Consensus       172 ~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~-~~GAdgvvVGSai~~~  236 (262)
T 1rd5_A          172 LVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIA-QWGADGVIIGSAMVRQ  236 (262)
T ss_dssp             EECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHHHH
T ss_pred             EecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHH-HcCCCEEEEChHHHhH
Confidence               000011      1134678899988899999999999999999999 5999999999997754

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=98.86  E-value=4.2e-08  Score=94.13  Aligned_cols=134  Identities=16%  Similarity=0.253  Sum_probs=110.5

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEcc----CCCcccccccccccccc--CChHHHHHHHHHHhhcc--cCcEEEEecCCCCh
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINM----GCPKSFSVSGGMGAALL--SKPELIHDILTMLKRNL--DVPVTCKIRLLKSS  156 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~----gcP~~~~~~~~~G~~l~--~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~  156 (326)
                      +++++.+.|+.+.+ ||+.|.++.    |+....     +|+.+.  ++++...++++++|+++  ++++.+...-+|+.
T Consensus       149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~-----~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~  223 (410)
T 2qq6_A          149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRD-----FWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI  223 (410)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSC-----SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCC-----cCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence            68888888877665 999999998    653221     455554  46788899999999987  57888888878999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++++++.++++|+++|.       +. ..+.+++..+++++.+++||++.+.+.++++++++++...+|.|++-
T Consensus       224 ~~a~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  291 (410)
T 2qq6_A          224 PSSIRFARAMEPFGLLWLE-------EP-TPPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMPD  291 (410)
T ss_dssp             HHHHHHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred             HHHHHHHHHHhhcCCCeEE-------CC-CChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence            9999999999999999874       11 23568999999999999999999999999999999976668999874

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.86  E-value=3.7e-08  Score=88.95  Aligned_cols=155  Identities=13%  Similarity=0.148  Sum_probs=106.9

Q ss_pred             CcEEEEECCCCH--HHHHHHHHHhhc-CCCEEEEcc--CCCccc---ccc-----ccccccccCChHHHHHHHHHHhhc-
Q 020428           76 NHVVFQMGTSDA--VRALTAAKMVCK-DVAAIDINM--GCPKSF---SVS-----GGMGAALLSKPELIHDILTMLKRN-  141 (326)
Q Consensus        76 ~p~~vQl~g~~~--~~~~~aa~~~~~-~~d~idlN~--gcP~~~---~~~-----~~~G~~l~~~p~~~~~iv~~v~~~-  141 (326)
                      ..++.-|...+|  +...+.++.+.+ |+|.|||++  +-|.-.   +.+     -..|    -+.+.+.++++++|+. 
T Consensus        18 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G----~~~~~~~~~v~~ir~~~   93 (267)
T 3vnd_A           18 GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAG----TTSSDCFDIITKVRAQH   93 (267)
T ss_dssp             CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcC
Confidence            356767755555  889999998876 899999874  233310   111     0122    2456778899999987 


Q ss_pred             ccCcEEEEecCCCChH---HHHHHHHHHHHcCCcEEEEeecccC------------------------------------
Q 020428          142 LDVPVTCKIRLLKSSQ---DTVELARRIEKTGVSALAVHGRKVA------------------------------------  182 (326)
Q Consensus       142 ~~~pv~vK~r~g~~~~---~~~e~a~~l~~~G~d~i~vh~r~~~------------------------------------  182 (326)
                      +++|+.+-.  .+++-   ....+++.+.++|+|.++++.-..+                                    
T Consensus        94 ~~~Pivlm~--Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~  171 (267)
T 3vnd_A           94 PDMPIGLLL--YANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG  171 (267)
T ss_dssp             TTCCEEEEE--CHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC
T ss_pred             CCCCEEEEe--cCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence            789987643  12321   2467888888899999887532110                                    


Q ss_pred             ---------CCCCC------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          183 ---------DRPRD------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       183 ---------~~~~~------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                               ...+|      +...+.++++++.+++||+..|||.|++++.+.+ ..|||+|.+|++++.
T Consensus       172 ~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~-~~gADgvVVGSaiv~  240 (267)
T 3vnd_A          172 EGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAI-KAGAAGAISGSAVVK  240 (267)
T ss_dssp             CSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred             CCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence                     00011      1235778899988899999999999999999788 589999999999764

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=98.86  E-value=3.7e-08  Score=94.18  Aligned_cols=124  Identities=13%  Similarity=0.207  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.++.+.+ ||+.|.++.|.               .+++...++++++|+++  ++++.+...-+|+.++++++
T Consensus       175 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~  239 (398)
T 2pp0_A          175 PLDQVLKNVVISRENGIGGIKLKVGQ---------------PNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRM  239 (398)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEEECCC---------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence            79999888887765 99999998763               25778889999999987  68899999888999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.++++|+++|-       +. ..+.+++..+++++.+++||++.+.+.++++++++++...+|.|++-
T Consensus       240 ~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  301 (398)
T 2pp0_A          240 GRKMEQFNLIWIE-------EP-LDAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLILGNASDFVQPD  301 (398)
T ss_dssp             HHHHGGGTCSCEE-------CC-SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             HHHHHHcCCceee-------CC-CChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            9999999999873       22 24568999999999999999999999999999999976668999885

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=98.85  E-value=4.1e-08  Score=94.04  Aligned_cols=136  Identities=14%  Similarity=0.201  Sum_probs=109.3

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEcc------CCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCCh
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINM------GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSS  156 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~------gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~  156 (326)
                      +++++.+.|+.+.+ ||+.|.++.      |++..   +...|....++++...++++++|+++  ++++.+...-+|+.
T Consensus       152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~---s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~  228 (407)
T 2o56_A          152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQ---QNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDT  228 (407)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSC---SCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcccccCCcCcccc---CcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence            89999888887765 999999986      54311   11122222345678889999999987  68899988888999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++++++.++++|+++|.       +. ..+.+++..+++++.+++||++.+.+.++++++++++...+|.|++-
T Consensus       229 ~~a~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  296 (407)
T 2o56_A          229 TSAIQFGRMIEELGIFYYE-------EP-VMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPD  296 (407)
T ss_dssp             HHHHHHHHHHGGGCCSCEE-------CS-SCSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred             HHHHHHHHHHHhcCCCEEe-------CC-CChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence            9999999999999999873       22 24568999999999999999999999999999999976668998875

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=98.84  E-value=5.4e-08  Score=92.79  Aligned_cols=125  Identities=8%  Similarity=0.052  Sum_probs=106.9

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.++.+.+ ||+.|.|+.|++               +++...++++++++++  ++++.+...-+|+.++++++
T Consensus       165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~  229 (392)
T 1tzz_A          165 GLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAY  229 (392)
T ss_dssp             CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence            78889888887665 999999998862               3677788999999887  58899988888999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc----CCcEEEecc
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA----GASSVMAAR  233 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~----Gad~VmiGr  233 (326)
                      ++.++++|+++|.       +. ..+.+++..+++++.+++||++.+.+.++++++++++..    .+|.|++--
T Consensus       230 ~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~  296 (392)
T 1tzz_A          230 AKMLRDYPLFWYE-------EV-GDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDC  296 (392)
T ss_dssp             HHHHTTSCCSEEE-------CC-SCTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred             HHHHHHcCCCeec-------CC-CChhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECc
Confidence            9999999999874       22 235689999999999999999999999999999999766    689998853

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=98.84  E-value=4.9e-08  Score=92.76  Aligned_cols=125  Identities=10%  Similarity=0.105  Sum_probs=106.8

Q ss_pred             CCH---HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHH
Q 020428           85 SDA---VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        85 ~~~---~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~  158 (326)
                      .++   +.+.+.|+.+.+ ||+.|.++.|+               .+++...++++++|+++  ++++.+...-+|+.++
T Consensus       135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~  199 (382)
T 2gdq_A          135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMILDANQSYDAAA  199 (382)
T ss_dssp             SSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHH
Confidence            578   888888887765 99999999876               24678889999999987  6889999888899999


Q ss_pred             HHHHHHHHHHc-CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          159 TVELARRIEKT-GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       159 ~~e~a~~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++++.+++. |+++|-       +. ..+.+++..+++++.+++||++.+.+.|+++++++++...+|.|++-
T Consensus       200 a~~~~~~l~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  266 (382)
T 2gdq_A          200 AFKWERYFSEWTNIGWLE-------EP-LPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPD  266 (382)
T ss_dssp             HHTTHHHHTTCSCEEEEE-------CC-SCSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             HHHHHHHHhhccCCeEEE-------CC-CCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence            99999999999 988873       22 24568999999999999999999999999999999976668999874

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=98.83  E-value=6.4e-08  Score=92.66  Aligned_cols=146  Identities=13%  Similarity=0.115  Sum_probs=117.5

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      .|+-..+++.+++++.+.++.+.+ ||..|.+ .|+|....      .....+++...+.++++|+++  ++++.+....
T Consensus       115 v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~------~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~  187 (405)
T 3rr1_A          115 MRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI------IDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHG  187 (405)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC------BCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCS
T ss_pred             eeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc------cccchhHHHHHHHHHHHHHHhCCCceEEEECCC
Confidence            466666777889999888877655 9999999 88874311      111234567788999999988  6789999888


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.|++++.++++...+|.|++-
T Consensus       188 ~~~~~~A~~~~~~L~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d  259 (405)
T 3rr1_A          188 RVSAPMAKVLIKELEPYRPLFIE-------EP-VLAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQPD  259 (405)
T ss_dssp             CBCHHHHHHHHHHHGGGCCSCEE-------CS-SCCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECCB
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEC
Confidence            99999999999999999999884       22 24558999999999999999999999999999999977779999886


Q ss_pred             cchh
Q 020428          233 RGAL  236 (326)
Q Consensus       233 r~~l  236 (326)
                      -+-.
T Consensus       260 ~~~~  263 (405)
T 3rr1_A          260 LSHA  263 (405)
T ss_dssp             TTTT
T ss_pred             hhhc
Confidence            4433

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=98.81  E-value=4.1e-08  Score=93.06  Aligned_cols=127  Identities=12%  Similarity=0.144  Sum_probs=108.2

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCC-hHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKS-SQDTVE  161 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~-~~~~~e  161 (326)
                      +++++.+.++.+.+ ||+.|.|++||+-             .+++...+.++++|+++  ++++.+....+|+ .+++++
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~g-------------~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~  212 (374)
T 3sjn_A          146 KPEDNVAIVQGLKDQGFSSIKFGGGVMG-------------DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAM  212 (374)
T ss_dssp             SGGGGHHHHHHHHTTTCSEEEEECTTTT-------------SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCC-------------CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHH
Confidence            34888887777655 9999999999861             24788889999999987  6889999988999 999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +++.+++.|+++|.       + +..+.+++..+++++.+++||++.+.+.+++++.++++...+|.|++--
T Consensus       213 ~~~~l~~~~i~~iE-------q-P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~  276 (374)
T 3sjn_A          213 MAKRLEEFNLNWIE-------E-PVLADSLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDI  276 (374)
T ss_dssp             HHHHSGGGCCSEEE-------C-SSCTTCHHHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBT
T ss_pred             HHHHhhhcCceEEE-------C-CCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence            99999999999984       2 2335589999999999999999999999999999999777899998753

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=98.80  E-value=5.8e-08  Score=92.87  Aligned_cols=155  Identities=7%  Similarity=0.028  Sum_probs=118.6

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc------ccccccccc--CChHHHHHHHHHHhhcc--cC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV------SGGMGAALL--SKPELIHDILTMLKRNL--DV  144 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~------~~~~G~~l~--~~p~~~~~iv~~v~~~~--~~  144 (326)
                      .|+-..+.+.+++++.+.++...+ ||..+-+..|++.....      ...-|..+.  ..++...++++++|+++  ++
T Consensus       123 v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~  202 (401)
T 3sbf_A          123 IPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQF  202 (401)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             eeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCC
Confidence            355555667889998888876654 99999999998532110      001122221  12567788899999987  68


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      ++.+....+|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.+++++.++++..
T Consensus       203 ~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~  274 (401)
T 3sbf_A          203 HILHDVHERLFPNQAIQFAKEVEQYKPYFIE-------DI-LPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANR  274 (401)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHGGGCCSCEE-------CS-SCTTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CChhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHHHhcC
Confidence            9999999899999999999999999999884       22 235578889999999999999999999999999999766


Q ss_pred             CCcEEEeccchhcC
Q 020428          225 GASSVMAARGALWN  238 (326)
Q Consensus       225 Gad~VmiGr~~l~~  238 (326)
                      .+|.|++--+-.+.
T Consensus       275 ~~d~v~~k~~~~GG  288 (401)
T 3sbf_A          275 RIDFIRCHVSQIGG  288 (401)
T ss_dssp             CCSEECCCGGGGTS
T ss_pred             CCCEEecCccccCC
Confidence            78999887554443

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=98.80  E-value=2.2e-07  Score=88.27  Aligned_cols=139  Identities=14%  Similarity=0.198  Sum_probs=114.1

Q ss_pred             cEEEEECCCCHHHHHHHHHH-hhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTSDAVRALTAAKM-VCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~-~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+...++..+++++.+.++. +.+ ||..+.+..|++               +++.-.+.++++|+++  ++++.+....
T Consensus       139 ~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDan~  203 (383)
T 3i4k_A          139 DVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG---------------DPAEDTRRVAELAREVGDRVSLRIDINA  203 (383)
T ss_dssp             EBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS---------------CHHHHHHHHHHHHHTTTTTSEEEEECTT
T ss_pred             EEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence            44455667788877765554 556 999999998863               4667778899999998  5789999998


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.+++.++++.+++.|+++|.       + +..+.+++..+++++.+++||++.+.+.+.+++.++++...+|.|++-
T Consensus       204 ~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k  275 (383)
T 3i4k_A          204 RWDRRTALHYLPILAEAGVELFE-------Q-PTPADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQAADVIALK  275 (383)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCEEE-------S-CSCTTCHHHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEE-------C-CCChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEEc
Confidence            99999999999999999999984       2 234568999999999999999999999999999999976779999987


Q ss_pred             cchhcC
Q 020428          233 RGALWN  238 (326)
Q Consensus       233 r~~l~~  238 (326)
                      -+-.+.
T Consensus       276 ~~~~GG  281 (383)
T 3i4k_A          276 TTKHGG  281 (383)
T ss_dssp             TTTTTS
T ss_pred             ccccCC
Confidence            554433

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=98.79  E-value=8.2e-08  Score=91.93  Aligned_cols=138  Identities=20%  Similarity=0.196  Sum_probs=111.4

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccccccc-ccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAA-LLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~-l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      .+++++.+.++.+.+ ||..+.++.|+|...    ..|.. ...+++...+.++++|+++  ++++.+....+|+.++++
T Consensus       150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~  225 (404)
T 4e5t_A          150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTI----YDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAK  225 (404)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEECCSCCCBT----TCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEeeCCCCCCcc----cccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHH
Confidence            478888887776654 999999999987541    12221 1234677788999999987  678999988899999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ++++.+++.|+++|.       + +..+.+++..+++++.+++||++.+.+.|++++.++++...+|.|++--+
T Consensus       226 ~~~~~l~~~~i~~iE-------e-P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~  291 (404)
T 4e5t_A          226 RLARRLEAYDPLWFE-------E-PIPPEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLG  291 (404)
T ss_dssp             HHHHHHGGGCCSEEE-------C-CSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTT
T ss_pred             HHHHHHhhcCCcEEE-------C-CCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCcc
Confidence            999999999999984       2 23355899999999999999999999999999999997666899877643

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=98.79  E-value=2.7e-07  Score=87.95  Aligned_cols=141  Identities=13%  Similarity=0.098  Sum_probs=115.9

Q ss_pred             CcEEEEEC---CCCHHHHHHHH-HHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEE
Q 020428           76 NHVVFQMG---TSDAVRALTAA-KMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTC  148 (326)
Q Consensus        76 ~p~~vQl~---g~~~~~~~~aa-~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~v  148 (326)
                      .|+-..++   ..+++++.+.+ +... +||..+.+..|++.+.         ...+++.-.+.++++|+++  ++++.+
T Consensus       126 v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---------~~~~~~~d~~~v~avR~a~g~~~~l~v  196 (393)
T 4dwd_A          126 LPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR---------CDVDIPGDIAKARAVRELLGPDAVIGF  196 (393)
T ss_dssp             EEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC---------CSCCHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             eeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc---------cccCHHHHHHHHHHHHHHhCCCCeEEE
Confidence            35555552   36788888777 6654 4999999999987542         3457888889999999987  689999


Q ss_pred             EecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          149 KIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      ....+|+.++++++++.+++.|+++|-       +. ..+.+++..+++++.+++||++.+.+.+.+++.++++.. +|.
T Consensus       197 DaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~d~  267 (393)
T 4dwd_A          197 DANNGYSVGGAIRVGRALEDLGYSWFE-------EP-VQHYHVGAMGEVAQRLDITVSAGEQTYTLQALKDLILSG-VRM  267 (393)
T ss_dssp             ECTTCCCHHHHHHHHHHHHHTTCSEEE-------CC-SCTTCHHHHHHHHHHCSSEEEBCTTCCSHHHHHHHHHHT-CCE
T ss_pred             ECCCCCCHHHHHHHHHHHHhhCCCEEE-------CC-CCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-CCE
Confidence            999899999999999999999999984       22 245589999999999999999999999999999999766 999


Q ss_pred             EEeccc
Q 020428          229 VMAARG  234 (326)
Q Consensus       229 VmiGr~  234 (326)
                      |++--+
T Consensus       268 v~~k~~  273 (393)
T 4dwd_A          268 VQPDIV  273 (393)
T ss_dssp             ECCCTT
T ss_pred             EEeCcc
Confidence            987644

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=98.79  E-value=5e-08  Score=91.86  Aligned_cols=135  Identities=10%  Similarity=0.089  Sum_probs=112.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+...++..+++.+.+.++.+. .|+..+.+++||                +++.-.+.++++|+++  ++++.+....+
T Consensus       131 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~~  194 (356)
T 3ro6_B          131 PTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG----------------DEEQDFERLRRLHETLAGRAVVRVDPNQS  194 (356)
T ss_dssp             EBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHTTSSEEEEECTTC
T ss_pred             eeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4556777788998888777655 499999999875                3567778899999887  67899999989


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc-CCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA-GASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~-Gad~VmiG  232 (326)
                      |+.+++.++++.+++.|+++|.       |. ..+.+++..+++++.+++||++.+.+.+++++.++++.. .+|.|++-
T Consensus       195 ~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k  266 (356)
T 3ro6_B          195 YDRDGLLRLDRLVQELGIEFIE-------QP-FPAGRTDWLRALPKAIRRRIAADESLLGPADAFALAAPPAACGIFNIK  266 (356)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCEE-------CC-SCTTCHHHHHTSCHHHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEE-------CC-CCCCcHHHHHHHHhcCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEc
Confidence            9999999999999999999984       32 235589999999998999999999999999999999656 69999987


Q ss_pred             cch
Q 020428          233 RGA  235 (326)
Q Consensus       233 r~~  235 (326)
                      -+-
T Consensus       267 ~~~  269 (356)
T 3ro6_B          267 LMK  269 (356)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            543

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=98.78  E-value=1.3e-07  Score=88.95  Aligned_cols=136  Identities=9%  Similarity=0.120  Sum_probs=111.3

Q ss_pred             EEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCC
Q 020428           79 VFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKS  155 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~  155 (326)
                      ...+...+++.+.+.++... .||..+.+..|++                ++.-.+.++++|+++  ++++.+....+|+
T Consensus       132 ~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~----------------~~~d~~~v~avR~a~g~~~~l~vDan~~~~  195 (354)
T 3jva_A          132 DITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG----------------IEADIARVKAIREAVGFDIKLRLDANQAWT  195 (354)
T ss_dssp             CEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCTTSEEEEECTTCSC
T ss_pred             eEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC----------------HHHHHHHHHHHHHHcCCCCeEEEECCCCCC
Confidence            34566678998887777654 5999999998763                355677889998887  6789999888999


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .++++++++.+++.|+++|.       + +..+.+++..+++++.+++||++.+.+.+++++.++++...+|.|++--+-
T Consensus       196 ~~~a~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~  267 (354)
T 3jva_A          196 PKDAVKAIQALADYQIELVE-------Q-PVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMK  267 (354)
T ss_dssp             HHHHHHHHHHTTTSCEEEEE-------C-CSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEE-------C-CCChhhHHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchh
Confidence            99999999999999998884       2 234558999999999999999999999999999999977779999987544


Q ss_pred             hcC
Q 020428          236 LWN  238 (326)
Q Consensus       236 l~~  238 (326)
                      .+.
T Consensus       268 ~GG  270 (354)
T 3jva_A          268 CGG  270 (354)
T ss_dssp             HTS
T ss_pred             cCC
Confidence            433

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=98.78  E-value=3e-07  Score=86.03  Aligned_cols=131  Identities=13%  Similarity=0.129  Sum_probs=106.9

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~  154 (326)
                      |+-..+.+.+++++.+.++.+.+ ||+.+.|+.|+                +++...++++++|++- ++++.+...-+|
T Consensus       130 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~avr~~g~~~~l~vDan~~~  193 (345)
T 2zad_A          130 ETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------NLKEDIEAVEEIAKVTRGAKYIVDANMGY  193 (345)
T ss_dssp             EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHSTTCEEEEECTTCS
T ss_pred             eeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------CHHHHHHHHHHHHhhCCCCeEEEECCCCC
Confidence            33344566789999888877655 99999998874                4666678889998872 466777777789


Q ss_pred             ChHHHHHHHHHHHHcCCc--EEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          155 SSQDTVELARRIEKTGVS--ALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +.++++++++.+++.|++  +|.       +. ..+.+++..+++++.+++||++.+.+.+++++.++++...+|.|++
T Consensus       194 ~~~~a~~~~~~l~~~~i~~~~iE-------~P-~~~~~~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~i  264 (345)
T 2zad_A          194 TQKEAVEFARAVYQKGIDIAVYE-------QP-VRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNI  264 (345)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSEEE-------CC-SCTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             CHHHHHHHHHHHHhcCCCeeeee-------CC-CCcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence            999999999999999999  763       22 2356899999999999999999999999999999997767999998

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.78  E-value=8.1e-09  Score=91.83  Aligned_cols=84  Identities=19%  Similarity=0.233  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++++.++++|+++|+++..+.... ..+.. +.++++++.+++||+++|||.|++++..++ ..|||+|++|++++.
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~-~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l-~~Gad~V~lg~~~l~  108 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFG-RGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAAL-ATGCARVNVGTAALE  108 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTT-SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCccccc-CCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHH-HcCCCEEEECchHhh
Confidence            678999999999999999997655432 23344 889999999999999999999999999999 589999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      +|+++.+
T Consensus       109 ~p~~~~~  115 (244)
T 2y88_A          109 NPQWCAR  115 (244)
T ss_dssp             CHHHHHH
T ss_pred             ChHHHHH
Confidence            9977654

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=98.78  E-value=4e-07  Score=80.93  Aligned_cols=197  Identities=13%  Similarity=0.117  Sum_probs=125.5

Q ss_pred             CCCCceEEccccCCCCH-HHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTL-PFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~-~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      ++..|+++.- ..|.+. .++..+...|+.++..-      +.+..........            +++..+  +-++..
T Consensus        10 ~~~srl~~Gt-gky~~~~~~~~ai~asg~eivtva------~rR~~~~~~~~~~------------~~~~i~--~~~~lp   68 (268)
T 2htm_A           10 ELKSRLILGS-GKYEDFGVMREAIAAAKAEVVTVS------VRRVELKAPGHVG------------LLEALE--GVRLLP   68 (268)
T ss_dssp             EECCSEEEEC-SSCSCHHHHHHHHHHTTCSEEEEE------EEECC-------C------------HHHHTT--TSEEEE
T ss_pred             EeecceEEec-CCCCCHHHHHHHHHHhCCCEEEEE------ccccCCCCCCccc------------HHHHHh--hhhccC
Confidence            4667787754 456665 66777888899887533      1111000000011            223333  345666


Q ss_pred             EECC-CCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428           81 QMGT-SDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        81 Ql~g-~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~  157 (326)
                      +-.| .+.++...++++..+  +-+.|.|..-       .+.  -.++.|+....+-.+.+.+. +..|.-.+.  .   
T Consensus        69 ntaG~~taeeAv~~a~lare~~gt~~iKlEvi-------~d~--~~l~pD~~~tv~aa~~L~k~-Gf~Vlpy~~--~---  133 (268)
T 2htm_A           69 NTAGARTAEEAVRLARLGRLLTGERWVKLEVI-------PDP--TYLLPDPLETLKAAERLIEE-DFLVLPYMG--P---  133 (268)
T ss_dssp             BCTTCCSHHHHHHHHHHHHHHHCCSEEBCCCC-------SCT--TTTCCCHHHHHHHHHHHHHT-TCEECCEEC--S---
T ss_pred             cccCCCCHHHHHHHHHhhhHhcCcceeeeeec-------cCc--cccCcCHHHHHHHHHHHHHC-CCEEeeccC--C---
Confidence            6644 789999999998765  5667655321       111  12666776666666666443 333221221  2   


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH-hcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA-ALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~-~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                       ..++++.+++.|++.|.--+..... ..+..+.+.++.+++ ..+ +|||..|||.|++|+..++ +.|||||++|+++
T Consensus       134 -D~~~ak~l~~~G~~aVmPlg~pIGs-G~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~Am-eLGAdgVlVgSAI  210 (268)
T 2htm_A          134 -DLVLAKRLAALGTATVMPLAAPIGS-GWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVM-ELGLDAVLVNTAI  210 (268)
T ss_dssp             -CHHHHHHHHHHTCSCBEEBSSSTTT-CCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHH-HTTCCEEEESHHH
T ss_pred             -CHHHHHHHHhcCCCEEEecCccCcC-CcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEChHH
Confidence             2378999999999999554442221 234557888999998 678 9999999999999999999 6999999999997


Q ss_pred             hc
Q 020428          236 LW  237 (326)
Q Consensus       236 l~  237 (326)
                      ..
T Consensus       211 ~~  212 (268)
T 2htm_A          211 AE  212 (268)
T ss_dssp             HT
T ss_pred             hC
Confidence            63

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=98.77  E-value=7.3e-08  Score=92.95  Aligned_cols=124  Identities=9%  Similarity=0.124  Sum_probs=105.5

Q ss_pred             CCH-HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDA-VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~-~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      .++ +.+.+.|+.+.+ ||+.|.++.|+                +++...++++++|+++  ++++.+...-+|+.++++
T Consensus       183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai  246 (428)
T 3bjs_A          183 YQPKESLAEEAQEYIARGYKALKLRIGD----------------AARVDIERVRHVRKVLGDEVDILTDANTAYTMADAR  246 (428)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEECCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence            567 888888877665 99999998875                4678889999999987  688988888889999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++.++++|+++|-       +. ..+.+++..+++++.++ +||++.+.+.|+++++++++...+|.|++-
T Consensus       247 ~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  311 (428)
T 3bjs_A          247 RVLPVLAEIQAGWLE-------EP-FACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPD  311 (428)
T ss_dssp             HHHHHHHHTTCSCEE-------CC-SCTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred             HHHHHHHhcCCCEEE-------CC-CCccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence            999999999999873       22 24568999999999999 999999999999999999965568988774

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=98.77  E-value=4.7e-08  Score=94.02  Aligned_cols=152  Identities=13%  Similarity=0.052  Sum_probs=116.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccc---------c--------ccccccCChHHHHHHHHHH
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSG---------G--------MGAALLSKPELIHDILTML  138 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~---------~--------~G~~l~~~p~~~~~iv~~v  138 (326)
                      |+-..+.+.+++++.+.++...+ ||..+-+..|+|......+         .        .+....++++...++++++
T Consensus       134 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~av  213 (418)
T 3r4e_A          134 MVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEEL  213 (418)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHH
Confidence            44445567889999888877654 9999999999975322100         0        0011122356778899999


Q ss_pred             hhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHH
Q 020428          139 KRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDD  216 (326)
Q Consensus       139 ~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d  216 (326)
                      |+++  ++++.+....+|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.|+++
T Consensus       214 R~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~  285 (418)
T 3r4e_A          214 RKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE-------DC-TPAENQEAFRLVRQHTVTPLAVGEIFNTIWD  285 (418)
T ss_dssp             HHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------SC-SCCSSGGGGHHHHHHCCSCEEECTTCCSGGG
T ss_pred             HHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------CC-CCccCHHHHHHHHhcCCCCEEEcCCcCCHHH
Confidence            9987  678999998899999999999999999999984       22 2445788899999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEeccchh
Q 020428          217 FQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       217 ~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.++++...+|.|++--+-.
T Consensus       286 ~~~~l~~~a~d~v~~k~~~~  305 (418)
T 3r4e_A          286 AKDLIQNQLIDYIRATVVGA  305 (418)
T ss_dssp             THHHHHTTCCSEECCCTTTT
T ss_pred             HHHHHHcCCCCeEecCcccc
Confidence            99999766689998864433

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.77  E-value=7.6e-09  Score=91.92  Aligned_cols=86  Identities=27%  Similarity=0.367  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +++.++++.++++|+|+|+++...... +..+..++.++++++.+++||+++|+|.+++++++++ ..|||+|++|+.++
T Consensus        33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~-~~Gad~V~i~~~~~  110 (253)
T 1h5y_A           33 GDPVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLF-RAGADKVSVNTAAV  110 (253)
T ss_dssp             ECHHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHH
T ss_pred             ccHHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChHHh
Confidence            367899999999999999999765543 2233467889999999999999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|+++.+
T Consensus       111 ~~~~~~~~  118 (253)
T 1h5y_A          111 RNPQLVAL  118 (253)
T ss_dssp             HCTHHHHH
T ss_pred             hCcHHHHH
Confidence            99987654

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=98.75  E-value=1.7e-08  Score=91.02  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++++.++++|++.|.++......... ..+++.++++++.+++||+++|||.+.+++.+++ ..|||+|++|+.++
T Consensus        30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~-g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~-~~Gad~v~lg~~~~  107 (266)
T 2w6r_A           30 ILLRDWVVEVEKRGAGEILLTSIDRDGTKS-GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADKALAASVFH  107 (266)
T ss_dssp             EEHHHHHHHHHHHTCSEEEEEETTTSSCSS-CCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHH-HHTCSEEECCCCC-
T ss_pred             CCHHHHHHHHHHCCCCEEEEEecCcccCCC-cccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCcHhhhhHHHH
Confidence            468999999999999999998877654433 3579999999999999999999999999999999 58999999999999


Q ss_pred             -c--Ccccccc
Q 020428          237 -W--NASIFSS  244 (326)
Q Consensus       237 -~--~P~lf~~  244 (326)
                       .  +|+.+.+
T Consensus       108 ~~~~~~~~~~~  118 (266)
T 2w6r_A          108 FREIDMRELKE  118 (266)
T ss_dssp             -----CHHHHH
T ss_pred             hCCCCHHHHHH
Confidence             5  8877765

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.74  E-value=9.6e-09  Score=91.46  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++++.++++|+|+|+++..+.... ..+.+ +.++++++.+++|++++|||.|++++..++ ..|||+|++|+.++.
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~-~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l-~~Gad~V~lg~~~l~  109 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFG-TGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAAL-ATGCTRVNLGTAALE  109 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHT-SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhc-CCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHH-HcCCCEEEECchHhh
Confidence            678899999999999999987654321 22445 889999999999999999999999999999 589999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      +|+++.+
T Consensus       110 ~p~~~~~  116 (244)
T 1vzw_A          110 TPEWVAK  116 (244)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9987654

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=98.73  E-value=1.7e-07  Score=89.87  Aligned_cols=138  Identities=18%  Similarity=0.191  Sum_probs=110.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccccccc-ccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAA-LLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~-l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      .+++++++.++.+.+ ||..+-++.|+|...    ..|.. ...+++...+.++++|+++  ++++.+....+|+.++++
T Consensus       143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~  218 (412)
T 4e4u_A          143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTA----YSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAI  218 (412)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEECCSCCCBT----TCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCcc----ccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence            578988887776654 999999999987541    11211 1123667788899999987  578999888899999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ++++.+++.|+++|.       + +..+.+++..+++++.+++||++.+.+.|++++.++++...+|.|++--+
T Consensus       219 ~~~~~L~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~  284 (412)
T 4e4u_A          219 RLAKRLEKYDPLWFE-------E-PVPPGQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQLNVA  284 (412)
T ss_dssp             HHHHHHGGGCCSEEE-------C-CSCSSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTT
T ss_pred             HHHHHhhhcCCcEEE-------C-CCChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCcc
Confidence            999999999999985       2 23455899999999999999999999999999999997666899877543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.73  E-value=1.1e-07  Score=93.14  Aligned_cols=129  Identities=18%  Similarity=0.127  Sum_probs=90.7

Q ss_pred             HHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428           92 TAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKT  169 (326)
Q Consensus        92 ~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~  169 (326)
                      +.++.+.+ |+|.|.++..           +    .+++...+.++.+++.+ ++|+..+--      .+.+.++.+.++
T Consensus       236 ~~a~~l~~~G~d~ivi~~a-----------~----g~~~~~~~~i~~l~~~~p~~pvi~G~v------~t~~~a~~~~~~  294 (491)
T 1zfj_A          236 ERAEALFEAGADAIVIDTA-----------H----GHSAGVLRKIAEIRAHFPNRTLIAGNI------ATAEGARALYDA  294 (491)
T ss_dssp             HHHHHHHHHTCSEEEECCS-----------C----TTCHHHHHHHHHHHHHCSSSCEEEEEE------CSHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCeEEEeee-----------c----CcchhHHHHHHHHHHHCCCCcEeCCCc------cCHHHHHHHHHc
Confidence            33444444 9999888741           1    13445667888888887 889885432      123667788899


Q ss_pred             CCcEEEEeec------ccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          170 GVSALAVHGR------KVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       170 G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |+|+|.+...      +......+.+..+.+.++.+   ..++|||+.|||++++|+.+++ ..|||+|++||+++..++
T Consensus       295 Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal-~~GA~~v~vG~~~~~~~e  373 (491)
T 1zfj_A          295 GVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL-AAGGNAVMLGSMFAGTDE  373 (491)
T ss_dssp             TCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTBSS
T ss_pred             CCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHH-HcCCcceeeCHHhhCCCc
Confidence            9999988410      11001123446777777765   4689999999999999999999 589999999999997654


Q ss_pred             cc
Q 020428          241 IF  242 (326)
Q Consensus       241 lf  242 (326)
                      ..
T Consensus       374 ~~  375 (491)
T 1zfj_A          374 AP  375 (491)
T ss_dssp             CC
T ss_pred             Cc
Confidence            33

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=98.73  E-value=1.7e-07  Score=82.73  Aligned_cols=132  Identities=16%  Similarity=0.194  Sum_probs=94.3

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-CChHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQDTVELARR  165 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~~~~e~a~~  165 (326)
                      ...++.+.+..|+|.||+.+          +.|.....+.+.+.+-+.++++.++- ..+|.=+  + .+.++....++.
T Consensus        97 Kv~Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~i  165 (239)
T 3ngj_A           97 KAYETKVAVEQGAEEVDMVI----------NIGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKR  165 (239)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEe----------ehHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHH
Confidence            34455555666999999865          35555567888888888999888741 2344322  2 456678888899


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCc--EEEeccchh
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGAS--SVMAARGAL  236 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad--~VmiGr~~l  236 (326)
                      ..++|+|+|-.+    .+...+.+..+.++.+++.+  +++|.++|||+|.+|+.+++ ..||+  |+..|+.++
T Consensus       166 a~~aGADfVKTS----TGf~~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i-~aGA~riGtS~~~~I~  235 (239)
T 3ngj_A          166 CVAAGAEYVKTS----TGFGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMI-NNGASRIGASAGIAIL  235 (239)
T ss_dssp             HHHHTCSEEECC----CSSSSCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHH-HTTEEEEEESCHHHHH
T ss_pred             HHHHCcCEEECC----CCCCCCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHH-HhcccceecccHHHHH
Confidence            999999999654    22223456677776666654  69999999999999999999 69999  555554444

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=98.71  E-value=4e-07  Score=82.42  Aligned_cols=135  Identities=18%  Similarity=0.196  Sum_probs=97.6

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +.|+...=|.-++.+..++.   .-|+|+|=|...              .+ .++.+.++++..++ .++.+.+-+.   
T Consensus       113 ~lPvl~kdfiid~~qv~~A~---~~GAD~VlLi~a--------------~l-~~~~l~~l~~~a~~-lGl~~lvev~---  170 (272)
T 3qja_A          113 SIPVLRKDFVVQPYQIHEAR---AHGADMLLLIVA--------------AL-EQSVLVSMLDRTES-LGMTALVEVH---  170 (272)
T ss_dssp             SSCEEEESCCCSHHHHHHHH---HTTCSEEEEEGG--------------GS-CHHHHHHHHHHHHH-TTCEEEEEES---
T ss_pred             CCCEEECccccCHHHHHHHH---HcCCCEEEEecc--------------cC-CHHHHHHHHHHHHH-CCCcEEEEcC---
Confidence            35777655667776554443   248999887532              11 25567777777765 4777766552   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +    .+.+..+.+.|+|.|-+++|....   -+.+++.+.++.+.+  ++||++.|||.|++|+.++. ..|+|||.||
T Consensus       171 t----~ee~~~A~~~Gad~IGv~~r~l~~---~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~-~~GadgvlVG  242 (272)
T 3qja_A          171 T----EQEADRALKAGAKVIGVNARDLMT---LDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYA-GAGADAVLVG  242 (272)
T ss_dssp             S----HHHHHHHHHHTCSEEEEESBCTTT---CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHH-HTTCSEEEEC
T ss_pred             C----HHHHHHHHHCCCCEEEECCCcccc---cccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHH-HcCCCEEEEc
Confidence            2    233455557899999999875432   235678888888887  79999999999999999999 6999999999


Q ss_pred             cchhcCc
Q 020428          233 RGALWNA  239 (326)
Q Consensus       233 r~~l~~P  239 (326)
                      ++++..+
T Consensus       243 sal~~a~  249 (272)
T 3qja_A          243 EGLVTSG  249 (272)
T ss_dssp             HHHHTCS
T ss_pred             HHHhCCC
Confidence            9998755

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=98.71  E-value=2.8e-07  Score=82.21  Aligned_cols=134  Identities=13%  Similarity=0.111  Sum_probs=97.6

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCC-CChHHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLL-KSSQDTVELARRI  166 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g-~~~~~~~e~a~~l  166 (326)
                      ...++...+..|+|.||+-+          ..|...-.+.+.+.+-+.++++.++ .|+-|=+-.+ .+.++....++..
T Consensus       113 Kv~Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia  182 (260)
T 3r12_A          113 KAHEAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVIS  182 (260)
T ss_dssp             HHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEe----------ehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            34455555666999999864          3566666788889888999988874 4443333333 4567788888999


Q ss_pred             HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCc--EEEeccchhc
Q 020428          167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGAS--SVMAARGALW  237 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad--~VmiGr~~l~  237 (326)
                      .++|+|+|-.+    .+...+.+..+.++.+++.+  ++||-++|||+|.+|+.+++ +.||+  |...|+.++.
T Consensus       183 ~eaGADfVKTS----TGf~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi-~aGA~RiGtS~g~~I~~  252 (260)
T 3r12_A          183 KLAGAHFVKTS----TGFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMI-MYGADRIGTSSGVKIVQ  252 (260)
T ss_dssp             HHTTCSEEECC----CSSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEEEESCHHHHHH
T ss_pred             HHhCcCEEEcC----CCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HcCCceeecchHHHHHH
Confidence            99999999543    33334556677777777665  69999999999999999999 69999  6666665553

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=98.68  E-value=2.9e-07  Score=80.08  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=94.4

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc----ccccccccc------cCChHHHHHHHHH-------
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS----VSGGMGAAL------LSKPELIHDILTM-------  137 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~----~~~~~G~~l------~~~p~~~~~iv~~-------  137 (326)
                      .|++..|.+.+++++.+.++.+.+ |++.|++...+|....    ..+.++..+      ..+++.+...++.       
T Consensus         7 ~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~   86 (212)
T 2v82_A            7 LPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVT   86 (212)
T ss_dssp             SCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEEC
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEe
Confidence            589999999999999999988876 8999999887764210    111122111      1233332222111       


Q ss_pred             ---------HhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEE
Q 020428          138 ---------LKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVI  206 (326)
Q Consensus       138 ---------v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi  206 (326)
                               ..+..+.++.+.+   .   +. +.+....+.|+|+|.++..       .+..++.++++++.++  +||+
T Consensus        87 ~~~~~~~~~~~~~~g~~~~~g~---~---t~-~e~~~a~~~G~d~v~v~~t-------~~~g~~~~~~l~~~~~~~ipvi  152 (212)
T 2v82_A           87 PNIHSEVIRRAVGYGMTVCPGC---A---TA-TEAFTALEAGAQALKIFPS-------SAFGPQYIKALKAVLPSDIAVF  152 (212)
T ss_dssp             SSCCHHHHHHHHHTTCEEECEE---C---SH-HHHHHHHHTTCSEEEETTH-------HHHCHHHHHHHHTTSCTTCEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEeec---C---CH-HHHHHHHHCCCCEEEEecC-------CCCCHHHHHHHHHhccCCCeEE
Confidence                     0001122221111   1   11 2234556788888887431       1235788899988876  9999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.|||. .+++.+++ ..||++|.+|++++..
T Consensus       153 a~GGI~-~~~i~~~~-~~Ga~gv~vGsai~~~  182 (212)
T 2v82_A          153 AVGGVT-PENLAQWI-DAGCAGAGLGSDLYRA  182 (212)
T ss_dssp             EESSCC-TTTHHHHH-HHTCSEEEECTTTCCT
T ss_pred             EeCCCC-HHHHHHHH-HcCCCEEEEChHHhCC
Confidence            999997 99999999 5899999999998765

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=98.68  E-value=4.4e-07  Score=82.07  Aligned_cols=133  Identities=11%  Similarity=0.078  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-CChHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQDTVELARR  165 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~~~~e~a~~  165 (326)
                      ...++...++.|+|.||+-+          .+|...-.+.+.+.+-+.++++.++-| .+|+=+  + .+.++....++.
T Consensus       128 Kv~Ea~~Ai~~GAdEIDmVI----------Nig~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~i  196 (288)
T 3oa3_A          128 KVSEAKRAMQNGASELDMVM----------NYPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVL  196 (288)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEe----------ehhhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHH
Confidence            44455555666999999543          245555567888999999999988655 355543  2 456677788899


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCc--EEEeccchhc
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGAS--SVMAARGALW  237 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad--~VmiGr~~l~  237 (326)
                      ..++|+|+|--+    .+...+.+   +.++++++.+.  .++||.++|||+|.+|+.+++ +.||+  |...|+.++.
T Consensus       197 a~eaGADfVKTS----TGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi-~aGA~RiGtS~g~~I~~  270 (288)
T 3oa3_A          197 SSLAGADYVKTS----TGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMV-RAGAERLGASAGVKIVN  270 (288)
T ss_dssp             HHHTTCSEEECC----CSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHH-HTTCSEEEESCHHHHHH
T ss_pred             HHHcCCCEEEcC----CCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HcCCceeehhhHHHHHH
Confidence            999999999543    11112333   45555555542  479999999999999999999 69999  6666666554

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=98.68  E-value=2.7e-07  Score=89.30  Aligned_cols=125  Identities=10%  Similarity=0.141  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      +.+++++.+.|+.+.+ ||+.|.|+.|+                +++...+.++++|+++  ++++.+...-+|+.++++
T Consensus       196 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~  259 (441)
T 2hxt_A          196 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI  259 (441)
T ss_dssp             TSCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEccCC----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence            3588989888887665 99999998873                3677788999999987  578888888889999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++.++++|+++|-       +. ..+.+++..+++++.+ ++||++.+.+++++++.++++...+|.|++-
T Consensus       260 ~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  324 (441)
T 2hxt_A          260 DWMRQLAEFDIAWIE-------EP-TSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQID  324 (441)
T ss_dssp             HHHHTTGGGCCSCEE-------CC-SCTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred             HHHHHHHhcCCCeee-------CC-CCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            999999999999873       22 2355899999999988 6999999999999999999977778999885

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=98.68  E-value=1.6e-07  Score=90.35  Aligned_cols=154  Identities=8%  Similarity=0.050  Sum_probs=116.2

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc------ccccccccc--CChHHHHHHHHHHhhcc--cCc
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV------SGGMGAALL--SKPELIHDILTMLKRNL--DVP  145 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~------~~~~G~~l~--~~p~~~~~iv~~v~~~~--~~p  145 (326)
                      |+-..+.+.+++++.+.++.+.+ ||..|-+..|++.....      ...-|..+.  ..++...++++++|+++  +++
T Consensus       145 ~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~  224 (422)
T 3tji_A          145 PAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLH  224 (422)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSE
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCE
Confidence            44444567889988888776654 99999999987531100      001111111  12456778899999987  688


Q ss_pred             EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcC
Q 020428          146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG  225 (326)
Q Consensus       146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~G  225 (326)
                      +.+....+|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.|++++.++++...
T Consensus       225 L~vDaN~~~~~~~A~~~~~~Le~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll~~ga  296 (422)
T 3tji_A          225 ILHDVHERLFPQQAVQLAKQLEPFQPYFIE-------DI-LPPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDLIVNRR  296 (422)
T ss_dssp             EEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CC-SCGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhCCCeEE-------CC-CChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCC
Confidence            999998899999999999999999999984       22 2345788899999999999999999999999999997667


Q ss_pred             CcEEEeccchhcC
Q 020428          226 ASSVMAARGALWN  238 (326)
Q Consensus       226 ad~VmiGr~~l~~  238 (326)
                      +|.|++--+-.+.
T Consensus       297 ~d~v~~k~~~~GG  309 (422)
T 3tji_A          297 IDFIRCHVSQIGG  309 (422)
T ss_dssp             CSEECCCGGGGTS
T ss_pred             CCEEecCccccCC
Confidence            8999887554444

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.67  E-value=2.1e-07  Score=84.10  Aligned_cols=158  Identities=12%  Similarity=0.199  Sum_probs=102.2

Q ss_pred             cEEEEECC--CCHHHHHHHHHHhhc-CCCEEEEccC--CCcc--cccccccccccc--CChHHHHHHHHHHhhc-ccCcE
Q 020428           77 HVVFQMGT--SDAVRALTAAKMVCK-DVAAIDINMG--CPKS--FSVSGGMGAALL--SKPELIHDILTMLKRN-LDVPV  146 (326)
Q Consensus        77 p~~vQl~g--~~~~~~~~aa~~~~~-~~d~idlN~g--cP~~--~~~~~~~G~~l~--~~p~~~~~iv~~v~~~-~~~pv  146 (326)
                      .++.=|..  .+.+...+.++.+.+ |+|.|||++-  -|..  .+...-.-.+|-  -+.+.+.++++++|+. +++|+
T Consensus        21 ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pi  100 (271)
T 3nav_A           21 AFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPI  100 (271)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence            35554533  456889999998877 8999999752  2221  000000000010  2456778899999987 78998


Q ss_pred             EEEecCCCChH---HHHHHHHHHHHcCCcEEEEeecccC------------------------------------C----
Q 020428          147 TCKIRLLKSSQ---DTVELARRIEKTGVSALAVHGRKVA------------------------------------D----  183 (326)
Q Consensus       147 ~vK~r~g~~~~---~~~e~a~~l~~~G~d~i~vh~r~~~------------------------------------~----  183 (326)
                      .+-.  .+++-   ....+++.+.++|+|.+++..-..+                                    .    
T Consensus       101 vlm~--Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY  178 (271)
T 3nav_A          101 GLLM--YANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTY  178 (271)
T ss_dssp             EEEE--CHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEE
T ss_pred             EEEe--cCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEE
Confidence            8743  12221   2466778888888888775311100                                    0    


Q ss_pred             -----CCCCc------CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          184 -----RPRDP------AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       184 -----~~~~~------~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           ..+|.      ...+.++++++.+++||+..+||.|++++.+.+ ..|||||.||+++..
T Consensus       179 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~-~~gADgvIVGSAiv~  242 (271)
T 3nav_A          179 LLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAI-EAGAAGAISGSAVVK  242 (271)
T ss_dssp             ECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHH-HTTCSEEEESHHHHH
T ss_pred             EEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence                 01111      124678889988899999999999999999888 589999999999874

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=98.67  E-value=2.6e-08  Score=88.90  Aligned_cols=86  Identities=14%  Similarity=0.228  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+++++|+.+.+.|+|.+++-.-++... ..+.+++.++++.+.+.+|+...|||+|.+++++++ ..|||-|.+|+.++
T Consensus        31 ~dP~~~a~~~~~~gad~lhvvDld~a~~-~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l-~~GadkVii~t~a~  108 (243)
T 4gj1_A           31 YNPLKKFKEYEKAGAKELHLVDLTGAKD-PSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALL-DCGVKRVVIGSMAI  108 (243)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEEHHHHHC-GGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHH-HTTCSEEEECTTTT
T ss_pred             CCHHHHHHHHHHCCCCEEEEEecCcccc-cchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHH-HcCCCEEEEccccc
Confidence            4688999999999999999876654322 346689999999999999999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       109 ~~p~li~e  116 (243)
T 4gj1_A          109 KDATLCLE  116 (243)
T ss_dssp             TCHHHHHH
T ss_pred             cCCchHHH
Confidence            99998754

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=98.67  E-value=3.4e-07  Score=80.57  Aligned_cols=133  Identities=17%  Similarity=0.219  Sum_probs=98.0

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-C----ChHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-K----SSQDTVE  161 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~----~~~~~~e  161 (326)
                      ...++...++.|+|.||+.+          ++|...-.+.+.+.+-+.++++.++ ...+|.=+  + .    ++++...
T Consensus        82 K~~E~~~Ai~~GAdEIDmVi----------nig~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~  150 (231)
T 3ndo_A           82 KATEAELAVAAGATEIDMVI----------DVGAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLAD  150 (231)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEe----------ehHhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHH
Confidence            44455555666999999865          3666666788999999999998884 22335433  2 3    6677788


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCC-CCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCc--EEEeccchh
Q 020428          162 LARRIEKTGVSALAVHGRKVADRP-RDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGAS--SVMAARGAL  236 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~-~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad--~VmiGr~~l  236 (326)
                      .++...++|+|+|-.    ..+.. .+.+..+.++.+++.+  +++|-++|||+|.+|+.+++ +.||+  |+..|+.++
T Consensus       151 a~~ia~~aGADfVKT----STGf~~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i-~aGa~RiGtS~g~~I~  225 (231)
T 3ndo_A          151 VCRVARDAGADFVKT----STGFHPSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAML-DAGATRLGLSGSRAVL  225 (231)
T ss_dssp             HHHHHHHTTCSEEEC----CCSCCTTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHH-HTTCSEEEESSHHHHH
T ss_pred             HHHHHHHHCcCEEEc----CCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HhcchhcccchHHHHH
Confidence            889999999999943    33322 3556677777777665  69999999999999999999 69999  777666655


Q ss_pred             c
Q 020428          237 W  237 (326)
Q Consensus       237 ~  237 (326)
                      .
T Consensus       226 ~  226 (231)
T 3ndo_A          226 D  226 (231)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.65  E-value=2.4e-07  Score=80.40  Aligned_cols=140  Identities=12%  Similarity=0.095  Sum_probs=95.4

Q ss_pred             CCcEEEEECCCC-HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           75 RNHVVFQMGTSD-AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        75 ~~p~~vQl~g~~-~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      +.|+.+.+.-.+ ++.+.+.+  +..|+|+|-++...                ..+.+.++++.+++. +.++.+-+.. 
T Consensus        53 ~~~i~~~~~~~~~~~~~~~~~--~~~Gad~v~v~~~~----------------~~~~~~~~~~~~~~~-g~~~~v~~~~-  112 (211)
T 3f4w_A           53 HKEVLADAKIMDGGHFESQLL--FDAGADYVTVLGVT----------------DVLTIQSCIRAAKEA-GKQVVVDMIC-  112 (211)
T ss_dssp             TSEEEEEEEECSCHHHHHHHH--HHTTCSEEEEETTS----------------CHHHHHHHHHHHHHH-TCEEEEECTT-
T ss_pred             CCEEEEEEEeccchHHHHHHH--HhcCCCEEEEeCCC----------------ChhHHHHHHHHHHHc-CCeEEEEecC-
Confidence            357877764444 44433322  22399999986431                124456666666654 6666553221 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                        +.+..+.++.+.+.|+|+|.++.....+.. ++..++.++++++.+ ++||++.|||+ ++++.+++ ..|||+|++|
T Consensus       113 --~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~-~~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~-~~Gad~vvvG  187 (211)
T 3f4w_A          113 --VDDLPARVRLLEEAGADMLAVHTGTDQQAA-GRKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYA-LLGPDVVIVG  187 (211)
T ss_dssp             --CSSHHHHHHHHHHHTCCEEEEECCHHHHHT-TCCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHH-TTCCSEEEEC
T ss_pred             --CCCHHHHHHHHHHcCCCEEEEcCCCccccc-CCCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHH-HcCCCEEEEC
Confidence              224567788999999999988733222221 234688999999886 89999999996 99999999 6899999999


Q ss_pred             cchhcCc
Q 020428          233 RGALWNA  239 (326)
Q Consensus       233 r~~l~~P  239 (326)
                      |+++..+
T Consensus       188 sai~~~~  194 (211)
T 3f4w_A          188 SAITHAA  194 (211)
T ss_dssp             HHHHTCS
T ss_pred             HHHcCCC
Confidence            9988654

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=98.65  E-value=9.9e-08  Score=83.22  Aligned_cols=86  Identities=16%  Similarity=0.139  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+..++++.+...|+..+.+++++..+...+. +++.+.++++..++|||+.||+.+++++.+++ ..|+|+|++|++++
T Consensus       130 ~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~-~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~-~~G~~~~~vg~a~~  207 (237)
T 3cwo_X          130 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFH  207 (237)
T ss_dssp             EEHHHHHHHHHHHTCSEEEEEETTTTTCCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH-HHTCSEEEESHHHH
T ss_pred             cCHHHHHHHHhhcCCCeEEEEecCCCCccccc-cHHHHHHHHHhcCCCEEecCCCCCHHHHHHHH-HcCcHHHhhhHHHH
Confidence            35788899999999999999987555555555 48999999999999999999999999999999 58999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|+.+.+
T Consensus       208 ~~~~~~~~  215 (237)
T 3cwo_X          208 FREIDVRE  215 (237)
T ss_dssp             TTSSCHHH
T ss_pred             cCCCCHHH
Confidence            99987665

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=98.64  E-value=1.8e-07  Score=83.03  Aligned_cols=55  Identities=7%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc-cccc
Q 020428          188 PAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS-IFSS  244 (326)
Q Consensus       188 ~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~-lf~~  244 (326)
                      +.+.++++++++.+ ++||++.|||+|++++++++ . |||+|++|+++..+|. ++++
T Consensus       167 ~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~-~-gAd~VIVGSa~v~~~~~~~~~  223 (240)
T 1viz_A          167 LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-E-HADVIVVGNAVYEDFDRALKT  223 (240)
T ss_dssp             CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-T-TCSEEEECTHHHHCHHHHHTH
T ss_pred             cChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH-h-CCCEEEEChHHHhCHHHHHHH
Confidence            55789999999999 99999999999999999998 5 9999999999999998 6664

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=98.64  E-value=2.9e-07  Score=87.78  Aligned_cols=125  Identities=11%  Similarity=0.124  Sum_probs=105.2

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      |.+++++.+.++.+.+ ||..+.+.+|+                +++.-.+.++++|+++  ++++.+....+|+.++++
T Consensus       153 g~~~e~~~~~a~~~~~~G~~~iKlK~g~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~  216 (392)
T 3ddm_A          153 GINPENPEDVVARKAAEGYRAFKLKVGF----------------DDARDVRNALHVRELLGAATPLMADANQGWDLPRAR  216 (392)
T ss_dssp             EECSSSHHHHHHHHHHHTCCCEEEECSS----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence            3447778777776655 99999998874                4667788899999987  678999999899999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++.+++.|+++|.       + +..+.+ ++..+++++.+++||++.+.+.|.+++.++++...+|.|++-
T Consensus       217 ~~~~~L~~~~i~~iE-------e-P~~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k  281 (392)
T 3ddm_A          217 QMAQRLGPAQLDWLE-------E-PLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPD  281 (392)
T ss_dssp             HHHHHHGGGCCSEEE-------C-CSCTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred             HHHHHHHHhCCCEEE-------C-CCCccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence            999999999999984       2 234557 999999999999999999999999999999976678988775

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=98.62  E-value=5.5e-07  Score=85.08  Aligned_cols=134  Identities=13%  Similarity=0.193  Sum_probs=109.6

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+...++..+++.+.+.++... .||..+-+..|+                +++.-.+.++++|+++  ++++.+...-+
T Consensus       131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~----------------~~~~d~~~v~avR~~~g~~~~l~vDaN~~  194 (368)
T 3q45_A          131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGG----------------SKELDVERIRMIREAAGDSITLRIDANQG  194 (368)
T ss_dssp             EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred             eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEecC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence            3445666778998887777654 599999998764                2566678899999887  67888888889


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |+.++++++++.+++.|+++|-       + +..+.+++..+++++.+++||.+.+.+.+++++.++++...+|.|++--
T Consensus       195 ~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~  266 (368)
T 3q45_A          195 WSVETAIETLTLLEPYNIQHCE-------E-PVSRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNLKL  266 (368)
T ss_dssp             BCHHHHHHHHHHHGGGCCSCEE-------C-CBCGGGGGGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred             CChHHHHHHHHHHhhcCCCEEE-------C-CCChhHHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEech
Confidence            9999999999999999999984       2 2244578889999999999999999999999999999766789998763


Q ss_pred             c
Q 020428          234 G  234 (326)
Q Consensus       234 ~  234 (326)
                      +
T Consensus       267 ~  267 (368)
T 3q45_A          267 S  267 (368)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=98.62  E-value=6.7e-07  Score=85.20  Aligned_cols=138  Identities=9%  Similarity=0.169  Sum_probs=112.9

Q ss_pred             cEEEEEC----CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEE-E
Q 020428           77 HVVFQMG----TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVT-C  148 (326)
Q Consensus        77 p~~vQl~----g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~-v  148 (326)
                      |+-..++    ..+++.+.+.++.+.+ |+..+.+++|+                +++.-.+.++++|+++  ++++. +
T Consensus       129 ~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avR~a~g~~~~l~~v  192 (391)
T 3gd6_A          129 KVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK----------------NLDADEEFLSRVKEEFGSRVRIKSY  192 (391)
T ss_dssp             EBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred             EeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC----------------CHHHHHHHHHHHHHHcCCCCcEEEe
Confidence            4455666    6788888888776654 99999999875                2566678889999887  57888 8


Q ss_pred             EecCCCChHHHHHHHHHHHHcCC--cEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428          149 KIRLLKSSQDTVELARRIEKTGV--SALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G~--d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                      ....+|+.+++.++++.+++.|+  ++|.       +. ..+.+++..+++++.+++||  .+.+.+.+++.++++...+
T Consensus       193 Dan~~~~~~~A~~~~~~l~~~~i~~~~iE-------qP-~~~~d~~~~~~l~~~~~iPI--dE~~~~~~~~~~~~~~~~~  262 (391)
T 3gd6_A          193 DFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------SP-APRNDFDGLYQLRLKTDYPI--SEHVWSFKQQQEMIKKDAI  262 (391)
T ss_dssp             ECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------CC-SCTTCHHHHHHHHHHCSSCE--EEECCCHHHHHHHHHHTCC
T ss_pred             cCCCCcCHHHHHHHHHHHHhcCCCcceec-------CC-CChhhHHHHHHHHHHcCCCc--CCCCCCHHHHHHHHHcCCC
Confidence            88889999999999999999999  8874       22 23558999999999999999  8899999999999977779


Q ss_pred             cEEEeccchhcCcc
Q 020428          227 SSVMAARGALWNAS  240 (326)
Q Consensus       227 d~VmiGr~~l~~P~  240 (326)
                      |.|++--+-.+...
T Consensus       263 d~v~~k~~~~GGit  276 (391)
T 3gd6_A          263 DIFNISPVFIGGLT  276 (391)
T ss_dssp             SEEEECHHHHTSHH
T ss_pred             CEEEECchhcCCHH
Confidence            99999876665543

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.61  E-value=2.5e-07  Score=88.24  Aligned_cols=102  Identities=21%  Similarity=0.401  Sum_probs=81.7

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-CCHHHHHHHHHhcCCcE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP-AKWGEIADIVAALSIPV  205 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-~~~~~i~~i~~~~~iPV  205 (326)
                      +++.+.++++.+++. +.|+.++++.    ....+.++.+.++|+|.+.+|++...+.+..+ .+|+.+.++++.+++||
T Consensus       140 d~~~~~~~i~~~~~~-g~~v~~~v~~----~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pv  214 (393)
T 2qr6_A          140 DTELLSERIAQVRDS-GEIVAVRVSP----QNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPV  214 (393)
T ss_dssp             CHHHHHHHHHHHHHT-TSCCEEEECT----TTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCE
T ss_pred             CHHHHHHHHHHHhhc-CCeEEEEeCC----ccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCE
Confidence            889999999999886 8999998864    24567788888999999999977533333333 37888899999999999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      ++ |||.|++++..++ +.|||+|++|+|.
T Consensus       215 i~-ggi~t~e~a~~~~-~~Gad~i~vg~Gg  242 (393)
T 2qr6_A          215 IA-GGVNDYTTALHMM-RTGAVGIIVGGGE  242 (393)
T ss_dssp             EE-ECCCSHHHHHHHH-TTTCSEEEESCCS
T ss_pred             EE-CCcCCHHHHHHHH-HcCCCEEEECCCc
Confidence            99 8999999999999 6999999999864

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.61  E-value=4.3e-07  Score=81.84  Aligned_cols=144  Identities=16%  Similarity=0.165  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccc------------cccccccCChHHHHHHHHHHhhcc-cCcEEEEe
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSG------------GMGAALLSKPELIHDILTMLKRNL-DVPVTCKI  150 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~------------~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~  150 (326)
                      .+.+...+.++.+.+ |+|.|||+.  |...-..+            ..|    -+.+.+.++++++++.+ ++|+.+ +
T Consensus        28 p~~~~~~~~~~~l~~~G~D~IElG~--P~sdP~adgp~i~~a~~~al~~G----~~~~~~~~~v~~ir~~~~~~Pi~~-m  100 (262)
T 2ekc_A           28 PDYETSLKAFKEVLKNGTDILEIGF--PFSDPVADGPTIQVAHEVALKNG----IRFEDVLELSETLRKEFPDIPFLL-M  100 (262)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEEC--CCSCCTTSCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTTSCEEE-E
T ss_pred             CChHHHHHHHHHHHHcCCCEEEECC--CCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhhcCCCCEEE-E
Confidence            456788888888877 899999964  43210000            111    24566778999999888 899877 2


Q ss_pred             cCCCChH---HHHHHHHHHHHcCCcEEEEeeccc----------------------CC----------------------
Q 020428          151 RLLKSSQ---DTVELARRIEKTGVSALAVHGRKV----------------------AD----------------------  183 (326)
Q Consensus       151 r~g~~~~---~~~e~a~~l~~~G~d~i~vh~r~~----------------------~~----------------------  183 (326)
                       ..+++-   ....+++.+.++|+|++++.+-..                      ..                      
T Consensus       101 -~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~  179 (262)
T 2ekc_A          101 -TYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSV  179 (262)
T ss_dssp             -CCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESS
T ss_pred             -ecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence             112211   125667777777777776532100                      00                      


Q ss_pred             -CCCC---cC----CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          184 -RPRD---PA----KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       184 -~~~~---~~----~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                       ..+|   +.    ..+.++++++.+++||+..|||.|++++.+ + ..|||+|++|+++...
T Consensus       180 ~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~-~~gADgvIVGSai~~~  240 (262)
T 2ekc_A          180 TGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-I-GSFADGVVVGSALVKL  240 (262)
T ss_dssp             CC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-H-HTTSSEEEECHHHHHH
T ss_pred             CCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-H-HcCCCEEEECHHHHhh
Confidence             0001   11    136788899888999999999999999999 5 3689999999998865

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=98.61  E-value=1e-06  Score=83.49  Aligned_cols=135  Identities=13%  Similarity=0.217  Sum_probs=108.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+-..+...+++.+.+.++... +||..+.+..|+.               +++.-.+.++++|+++  ++++.+....+
T Consensus       137 ~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan~~  201 (377)
T 3my9_A          137 PLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVK---------------PHAEELRILETMRGEFGERIDLRLDFNQA  201 (377)
T ss_dssp             EBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTTC
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------cHHHHHHHHHHHHHHhCCCCeEEEeCCCC
Confidence            4445565567877766665544 4999999988752               3455667888998887  67899999889


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |+.++++++++.+++.|+++|.       + +..+.+++..+++++.+++||.+.+.+.+.+++.++++...+|.|++--
T Consensus       202 ~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~  273 (377)
T 3my9_A          202 LTPFGAMKILRDVDAFRPTFIE-------Q-PVPRRHLDAMAGFAAALDTPILADESCFDAVDLMEVVRRQAADAISVKI  273 (377)
T ss_dssp             CCTTTHHHHHHHHHTTCCSCEE-------C-CSCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCH
T ss_pred             cCHHHHHHHHHHHhhcCCCEEE-------C-CCCccCHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEecc
Confidence            9999999999999999999883       2 2345689999999999999999999999999999999777799998864


Q ss_pred             c
Q 020428          234 G  234 (326)
Q Consensus       234 ~  234 (326)
                      +
T Consensus       274 ~  274 (377)
T 3my9_A          274 M  274 (377)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=98.60  E-value=5.5e-07  Score=81.50  Aligned_cols=150  Identities=11%  Similarity=0.075  Sum_probs=96.9

Q ss_pred             EEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccc------------cccccccccCChHHHHHHHHHHhhccc
Q 020428           78 VVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSV------------SGGMGAALLSKPELIHDILTMLKRNLD  143 (326)
Q Consensus        78 ~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~------------~~~~G~~l~~~p~~~~~iv~~v~~~~~  143 (326)
                      ++.=|..  .+.+...+.++.+.+++|.|||+.  |...-.            .-..|    -+.+.+.++++++++.++
T Consensus        18 li~~i~~GdP~~~~~~~~~~~l~~~aD~IElG~--PfsdP~adGp~Iq~a~~~Al~~G----~~~~~~~~~v~~ir~~~~   91 (271)
T 1ujp_A           18 LIPYLTAGFPSREGFLQAVEEVLPYADLLEIGL--PYSDPLGDGPVIQRASELALRKG----MSVQGALELVREVRALTE   91 (271)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHGGGCSSEEEEC--CCCC----CHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCC
T ss_pred             EEEEecCCCCChHHHHHHHHHHHhcCCEEEECC--CCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCC
Confidence            4444433  345677777777766699999954  432100            00111    245667789999998888


Q ss_pred             CcEEEEecCCCCh---HHHHHHHHHHHHcCCcEEEEeec-------------------------ccC-------------
Q 020428          144 VPVTCKIRLLKSS---QDTVELARRIEKTGVSALAVHGR-------------------------KVA-------------  182 (326)
Q Consensus       144 ~pv~vK~r~g~~~---~~~~e~a~~l~~~G~d~i~vh~r-------------------------~~~-------------  182 (326)
                      +|+.+ + ..+++   -....+++.+.++|+|++++-+-                         +..             
T Consensus        92 ~Pii~-m-~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~g  169 (271)
T 1ujp_A           92 KPLFL-M-TYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATG  169 (271)
T ss_dssp             SCEEE-E-CCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCS
T ss_pred             CCEEE-E-ecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCC
Confidence            99887 2 11221   12456677777777776663111                         000             


Q ss_pred             -------CCCCC------cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          183 -------DRPRD------PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       183 -------~~~~~------~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                             ..++|      ....++++++++.+++||++.|||.|++++.++   .|||+|+||+++...
T Consensus       170 fiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~---~~ADgVIVGSAi~~~  235 (271)
T 1ujp_A          170 FVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA---AVADGVVVGSALVRA  235 (271)
T ss_dssp             CEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH---TTSSEEEECHHHHHH
T ss_pred             CEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh---cCCCEEEEChHHhcc
Confidence                   00111      223678999999889999999999999999996   689999999998864

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=98.59  E-value=1e-06  Score=77.26  Aligned_cols=133  Identities=19%  Similarity=0.200  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-CChHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQDTVELARR  165 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~~~~e~a~~  165 (326)
                      ...++-+.++.|+|.||+.+          ..|...-.+.+.+.+-+.++++.++-+ .+|+=+  + .++++....++.
T Consensus        73 k~~e~~~Ai~~GAdevd~vi----------nig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~i  141 (220)
T 1ub3_A           73 KALEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEA  141 (220)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEecc----------cchhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHH
Confidence            34455555556999999865          355555567888888888888887433 445322  2 456778888999


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCc--EEEeccchhc
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGAS--SVMAARGALW  237 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad--~VmiGr~~l~  237 (326)
                      ..++|+|+|-..    .+...+.+..+.++.+++.  .++||-++|||+|.+++.+++ +.||+  |+..|+.++.
T Consensus       142 a~eaGADfVKTs----TGf~~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i-~aGa~RiG~S~g~~I~~  212 (220)
T 1ub3_A          142 AIRGGADFLKTS----TGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRML-KAGASRLGTSSGVALVA  212 (220)
T ss_dssp             HHHHTCSEEECC----CSSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEETTHHHHHC
T ss_pred             HHHhCCCEEEeC----CCCCCCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHH-HCCCcccchhHHHHHHH
Confidence            999999999543    2222345566666666653  479999999999999999999 59999  8877777553

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=98.58  E-value=4e-07  Score=79.73  Aligned_cols=77  Identities=27%  Similarity=0.311  Sum_probs=59.5

Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCC--CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPR--DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~--~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.+..+.+.|+|+|.+......+...  .+.+|+.++++++.+++||++.||| |++++.+++ ..|+++|++|++++.+
T Consensus       121 ~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~-~~Ga~gv~vgs~i~~~  198 (221)
T 1yad_A          121 EEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVK-QAGADGIAVMSGIFSS  198 (221)
T ss_dssp             HHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHH-HTTCSEEEESHHHHTS
T ss_pred             HHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHH-HcCCCEEEEhHHhhCC
Confidence            33667778999999986542211111  2567999999998889999999999 999999999 5999999999998875


Q ss_pred             c
Q 020428          239 A  239 (326)
Q Consensus       239 P  239 (326)
                      +
T Consensus       199 ~  199 (221)
T 1yad_A          199 A  199 (221)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=98.58  E-value=6.1e-07  Score=84.69  Aligned_cols=128  Identities=9%  Similarity=0.099  Sum_probs=102.9

Q ss_pred             cEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+...++. .+++++.+.|+.+.+ ||+.|.++.|                  |+...++++++|+++  ++++.+...-
T Consensus       131 ~~~~~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~~------------------~~~~~e~v~avr~~~g~~~~l~vDan~  192 (368)
T 1sjd_A          131 PCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE------------------PGWDVEPVRAVRERFGDDVLLQVDANT  192 (368)
T ss_dssp             EBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB------------------TTBSHHHHHHHHHHHCTTSEEEEECTT
T ss_pred             cceEEeeCCCCHHHHHHHHHHHHHhCccEEEEecC------------------chhHHHHHHHHHHhcCCCceEEEeccC
Confidence            34445543 478989888887665 9999999863                  234457788888876  5778887777


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +|+.++ +++++.+++.|+++|-       +. ..+.+++..+++++.+++||++.+.+.++++++++++...+|.|++
T Consensus       193 ~~~~~~-~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  262 (368)
T 1sjd_A          193 AYTLGD-APQLARLDPFGLLLIE-------QP-LEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNI  262 (368)
T ss_dssp             CCCGGG-HHHHHTTGGGCCSEEE-------CC-SCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             CCCHHH-HHHHHHHHhcCCCeEe-------CC-CChhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence            899989 9999999999999873       22 2456899999999999999999999999999999997666899988

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=98.56  E-value=1.7e-06  Score=78.18  Aligned_cols=137  Identities=11%  Similarity=0.101  Sum_probs=102.9

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +.|+..+=|..++.+..++   ...|+|+|=|...              .+ +++.+.++++..++. +..+.+-+.   
T Consensus       120 ~lPVl~Kdfi~d~~qi~ea---~~~GAD~VlLi~a--------------~L-~~~~l~~l~~~a~~l-Gl~~lvevh---  177 (272)
T 3tsm_A          120 SLPALRKDFLFDPYQVYEA---RSWGADCILIIMA--------------SV-DDDLAKELEDTAFAL-GMDALIEVH---  177 (272)
T ss_dssp             SSCEEEESCCCSTHHHHHH---HHTTCSEEEEETT--------------TS-CHHHHHHHHHHHHHT-TCEEEEEEC---
T ss_pred             CCCEEECCccCCHHHHHHH---HHcCCCEEEEccc--------------cc-CHHHHHHHHHHHHHc-CCeEEEEeC---
Confidence            4577776666777754443   2348999888653              12 456788888887764 777666663   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                          ..+.++.+.+.|++.|-+.+|.-..   -..|++...++.+.+  ++|+|+-|||.|++|+.++. ..|+|+|.||
T Consensus       178 ----~~eEl~~A~~~ga~iIGinnr~l~t---~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~-~~Ga~gvLVG  249 (272)
T 3tsm_A          178 ----DEAEMERALKLSSRLLGVNNRNLRS---FEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLE-KSGIGTFLIG  249 (272)
T ss_dssp             ----SHHHHHHHTTSCCSEEEEECBCTTT---CCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHH-TTTCCEEEEC
T ss_pred             ----CHHHHHHHHhcCCCEEEECCCCCcc---CCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHH-HcCCCEEEEc
Confidence                2344566778999999999886442   245788888888877  69999999999999999999 6999999999


Q ss_pred             cchhcCccc
Q 020428          233 RGALWNASI  241 (326)
Q Consensus       233 r~~l~~P~l  241 (326)
                      ++++..++.
T Consensus       250 ~almr~~d~  258 (272)
T 3tsm_A          250 ESLMRQHDV  258 (272)
T ss_dssp             HHHHTSSCH
T ss_pred             HHHcCCcCH
Confidence            999987654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.56  E-value=7.1e-07  Score=87.77  Aligned_cols=102  Identities=20%  Similarity=0.158  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhhcc-c-CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CCCCcCCHHHHHHHHH
Q 020428          129 ELIHDILTMLKRNL-D-VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RPRDPAKWGEIADIVA  199 (326)
Q Consensus       129 ~~~~~iv~~v~~~~-~-~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~~~~~~~~~i~~i~~  199 (326)
                      ..+.+.++.+++.. + .||.++.-      .+.+-++.+.++|+|.+.+ |.....       ...+.+....+.++.+
T Consensus       268 ~~~~~~i~~lk~~~~~~~~Vi~G~V------~t~~~a~~l~~aGad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~  340 (503)
T 1me8_A          268 EWQKITIGWIREKYGDKVKVGAGNI------VDGEGFRYLADAGADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVA  340 (503)
T ss_dssp             HHHHHHHHHHHHHHGGGSCEEEEEE------CSHHHHHHHHHHTCSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHH
T ss_pred             cchhhHHHHHHHhCCCCceEeeccc------cCHHHHHHHHHhCCCeEEe-cccCCcCcccccccCCCCchHHHHHHHHH
Confidence            33556667777776 5 88887664      2345678888999999998 553321       1123456677777665


Q ss_pred             hc---------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          200 AL---------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       200 ~~---------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      .+         ++|||+.|||.++.|+.+++ ..|||+||+||.++..
T Consensus       341 ~~~~~~~~~~~~ipvia~GGi~~~~di~kAl-alGA~~V~iG~~~~~~  387 (503)
T 1me8_A          341 ERNKYFEETGIYIPVCSDGGIVYDYHMTLAL-AMGADFIMLGRYFARF  387 (503)
T ss_dssp             HHHHHHHHHSEECCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHTB
T ss_pred             HHHHHhhhcCCCceEEEeCCCCCHHHHHHHH-HcCCCEEEECchhhcc
Confidence            43         69999999999999999999 6999999999999853

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=98.56  E-value=9.9e-07  Score=84.90  Aligned_cols=150  Identities=11%  Similarity=0.097  Sum_probs=114.0

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccccccc------------------c--cCChHHHHHHH
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAA------------------L--LSKPELIHDIL  135 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~------------------l--~~~p~~~~~iv  135 (326)
                      |+-.-+.+.+++++.+.++...+ ||..+-+..|-|....   .+|..                  .  -.+.+...+++
T Consensus       140 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~~---~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v  216 (424)
T 3v3w_A          140 LSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAK---TYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVF  216 (424)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCSC---CTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCccccc---cccccccccccccccccccccccccchhHHHHHHHHH
Confidence            44444566789998887776654 9999999888642100   01100                  0  01246678889


Q ss_pred             HHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC
Q 020428          136 TMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE  213 (326)
Q Consensus       136 ~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s  213 (326)
                      +++|+++  ++++.+....+|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.+
T Consensus       217 ~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~  288 (424)
T 3v3w_A          217 AAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWME-------DA-VPAENQESFKLIRQHTTTPLAVGEVFNS  288 (424)
T ss_dssp             HHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CC-SCCSSTTHHHHHHHHCCSCEEECTTCCS
T ss_pred             HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CChHhHHHHHHHHhhCCCCEEEccCcCC
Confidence            9999987  678999988899999999999999999999984       22 2345788899999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEeccchhc
Q 020428          214 YDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       214 ~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++++.++++...+|.|++--+-.+
T Consensus       289 ~~~~~~~i~~ga~d~v~~k~~~~G  312 (424)
T 3v3w_A          289 IHDCRELIQNQWIDYIRTTIVHAG  312 (424)
T ss_dssp             GGGTHHHHHTTCCSEECCCTTTTT
T ss_pred             HHHHHHHHHcCCCCeEeecchhcC
Confidence            999999997666899988654443

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=98.56  E-value=1.1e-06  Score=82.93  Aligned_cols=135  Identities=10%  Similarity=0.124  Sum_probs=108.1

Q ss_pred             cEEEEECCCCH-HHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTSDA-VRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~-~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+..-+...++ +.+.++++.+. .|+..+.+..|+.               +++.-.+.++++|+++  ++++.+....
T Consensus       133 ~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan~  197 (370)
T 1chr_A          133 PIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDVNQ  197 (370)
T ss_dssp             EBEEEECSSSHHHHHHHHHHHHHTTCCCEEEEECSSS---------------CSHHHHHHHHHHHHHSSTTCCEEEECTT
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEecCCC---------------CHHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence            34344544444 45677777777 4999999988753               3556677889999987  4799999998


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.+++.++++.+++.|+++|.       | +..+.+++..+++++.+++||++.+.+.+.+++.++++...+|.|++-
T Consensus       198 ~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~~~~~~~~l~~~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k  269 (370)
T 1chr_A          198 AWDEQVASVYIPELEALGVELIE-------Q-PVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLK  269 (370)
T ss_dssp             CCCTTHHHHHTHHHHTTTEEEEE-------C-CSCTTCHHHHHHHHHHSCSEEEESSSCCSHHHHHHHHTTTSCSEEEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEE-------C-CCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEEC
Confidence            99999999999999999998874       2 234568999999999999999999999999999999976679999886


Q ss_pred             cc
Q 020428          233 RG  234 (326)
Q Consensus       233 r~  234 (326)
                      -+
T Consensus       270 ~~  271 (370)
T 1chr_A          270 LC  271 (370)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=98.54  E-value=8e-07  Score=85.58  Aligned_cols=150  Identities=12%  Similarity=0.052  Sum_probs=112.4

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccccccc---c--------------c---CChHHHHHHH
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAA---L--------------L---SKPELIHDIL  135 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~---l--------------~---~~p~~~~~iv  135 (326)
                      |+-.-+.+.+++++.+.++...+ ||..+-+..|.|...   ..+|..   .              .   .+.+...+++
T Consensus       141 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~---~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v  217 (425)
T 3vcn_A          141 TVYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGLA---STYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLF  217 (425)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS---CCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHH
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCcccc---ccccccccccccCcccccccccccccchhHHHHHHHHH
Confidence            44444566789998887776654 999999988864210   001100   0              0   0134456788


Q ss_pred             HHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCC
Q 020428          136 TMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFE  213 (326)
Q Consensus       136 ~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s  213 (326)
                      +++|+++  ++++.+....+|+.++++++++.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.|
T Consensus       218 ~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~  289 (425)
T 3vcn_A          218 ERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLE-------DS-VPAENQAGFRLIRQHTTTPLAVGEIFAH  289 (425)
T ss_dssp             HHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CC-SCCSSTTHHHHHHHHCCSCEEECTTCCS
T ss_pred             HHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CChhhHHHHHHHHhcCCCCEEeCCCcCC
Confidence            8999887  678999888899999999999999999999984       22 2345788899999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEeccchhc
Q 020428          214 YDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       214 ~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++++.++++...+|.|++--+-.+
T Consensus       290 ~~~~~~~i~~~a~d~v~~k~~~~G  313 (425)
T 3vcn_A          290 VWDAKQLIEEQLIDYLRATVLHAG  313 (425)
T ss_dssp             GGGTHHHHHTTCCSEECCCTTTTT
T ss_pred             HHHHHHHHHcCCCCeEecChhhcC
Confidence            999999997666899988654433

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=98.54  E-value=2.7e-07  Score=83.02  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=67.2

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ...+...+..|...+-+.+..      .+.+.+.++++++.+  ++||++.|||+|.+++++++ ..|||+|++|++++.
T Consensus       189 ~aYa~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll-~aGAD~VVVGSAav~  261 (286)
T 3vk5_A          189 DRYLHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYL-DSGADYVGFAGALEQ  261 (286)
T ss_dssp             HHHHHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHH-HTTCSEEEESGGGSS
T ss_pred             HHHHHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECchhhc
Confidence            566777778888888877532      466789999999999  89999999999999999999 689999999999999


Q ss_pred             C--cccccc
Q 020428          238 N--ASIFSS  244 (326)
Q Consensus       238 ~--P~lf~~  244 (326)
                      |  |.++++
T Consensus       262 d~~Pelv~e  270 (286)
T 3vk5_A          262 PDWRSALAE  270 (286)
T ss_dssp             TTHHHHHHH
T ss_pred             CCCHHHHHH
Confidence            9  777665

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=98.54  E-value=1.6e-07  Score=81.75  Aligned_cols=143  Identities=15%  Similarity=0.187  Sum_probs=98.6

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc---------ccccccccccCChHHHH-------------
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS---------VSGGMGAALLSKPELIH-------------  132 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~---------~~~~~G~~l~~~p~~~~-------------  132 (326)
                      .|++.-+-+.+++++.+.++.+.+ |++.|++++-+|....         ...++|. ++ +.+.+.             
T Consensus        13 ~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~-vl-~~d~~~~A~~~GAd~v~~~   90 (207)
T 2yw3_A           13 SRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGT-VR-SPKEAEAALEAGAAFLVSP   90 (207)
T ss_dssp             HCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEES-CC-SHHHHHHHHHHTCSEEEES
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCe-Ee-eHHHHHHHHHcCCCEEEcC
Confidence            378888888888888888887766 8999999988875421         1123343 22 333332             


Q ss_pred             ----HHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc-CCcEE
Q 020428          133 ----DILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL-SIPVI  206 (326)
Q Consensus       133 ----~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~-~iPVi  206 (326)
                          ++++..+. .++|+...+.       +.+.+..+.+.|+|+|.++.-       ... -.+.++.++..+ ++|++
T Consensus        91 ~~d~~v~~~~~~-~g~~~i~G~~-------t~~e~~~A~~~Gad~v~~fpa-------~~~gG~~~lk~l~~~~~~ipvv  155 (207)
T 2yw3_A           91 GLLEEVAALAQA-RGVPYLPGVL-------TPTEVERALALGLSALKFFPA-------EPFQGVRVLRAYAEVFPEVRFL  155 (207)
T ss_dssp             SCCHHHHHHHHH-HTCCEEEEEC-------SHHHHHHHHHTTCCEEEETTT-------TTTTHHHHHHHHHHHCTTCEEE
T ss_pred             CCCHHHHHHHHH-hCCCEEecCC-------CHHHHHHHHHCCCCEEEEecC-------ccccCHHHHHHHHhhCCCCcEE
Confidence                23333332 3555554431       233456667789999999651       111 257788888887 89999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.|||+ .+++.+++ ..|+++|.+|++++.
T Consensus       156 aiGGI~-~~n~~~~l-~aGa~~vavgSai~~  184 (207)
T 2yw3_A          156 PTGGIK-EEHLPHYA-ALPNLLAVGGSWLLQ  184 (207)
T ss_dssp             EBSSCC-GGGHHHHH-TCSSBSCEEESGGGS
T ss_pred             EeCCCC-HHHHHHHH-hCCCcEEEEehhhhC
Confidence            999997 79999999 699999999999765

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=98.54  E-value=3.1e-06  Score=80.37  Aligned_cols=136  Identities=12%  Similarity=0.159  Sum_probs=109.0

Q ss_pred             cEEEEECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~  154 (326)
                      |+...++..+++.+.+.++.. .+||..+.+..|+.               +++.-.+.++++|+++ ++++.+....+|
T Consensus       139 ~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~~~~~l~vDan~~~  203 (385)
T 3i6e_A          139 PLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR---------------DHAFDIMRLELIARDFPEFRVRVDYNQGL  203 (385)
T ss_dssp             EBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTCC
T ss_pred             EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence            455566666787776655554 45999999988742               3455567788888876 678999998899


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +.++++++++.+++.|+.+|-       + +..+.+++..+++++.+++||.+...+.+.+++.++++...+|.|++--+
T Consensus       204 ~~~~A~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~  275 (385)
T 3i6e_A          204 EIDEAVPRVLDVAQFQPDFIE-------Q-PVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIM  275 (385)
T ss_dssp             CGGGHHHHHHHHHTTCCSCEE-------C-CSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEE-------C-CCCcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence            999999999999999999883       2 23456899999999999999999999999999999997777899988644


Q ss_pred             h
Q 020428          235 A  235 (326)
Q Consensus       235 ~  235 (326)
                      -
T Consensus       276 ~  276 (385)
T 3i6e_A          276 K  276 (385)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=98.53  E-value=1.8e-06  Score=82.22  Aligned_cols=134  Identities=14%  Similarity=0.202  Sum_probs=108.1

Q ss_pred             cEEEEECC---CCHHHHHHHHHH-hhc---CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEE
Q 020428           77 HVVFQMGT---SDAVRALTAAKM-VCK---DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVT  147 (326)
Q Consensus        77 p~~vQl~g---~~~~~~~~aa~~-~~~---~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~  147 (326)
                      |+-..+++   .+++++.+.++. +.+   ||..+-+..|.+               +++.-.+.++++|+++  ++++.
T Consensus       159 ~~y~s~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l~  223 (390)
T 3ugv_A          159 KAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD---------------DPAVDIETAEAVWDAVGRDTALM  223 (390)
T ss_dssp             EEEECSCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             EEEEecccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEEE
Confidence            44444455   678887766654 457   899999988754               3566677889999887  67899


Q ss_pred             EEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          148 CKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       148 vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      +....+|+.++++++++.+++.|+++|-       | +..+.+++..+++++.+++||.+...+.+..++.++++...+|
T Consensus       224 vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d  295 (390)
T 3ugv_A          224 VDFNQGLDMAEAMHRTRQIDDLGLEWIE-------E-PVVYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQALQAGACD  295 (390)
T ss_dssp             EECTTCCCHHHHHHHHHHHTTSCCSEEE-------C-CSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred             EECCCCCCHHHHHHHHHHHHhhCCCEEE-------C-CCCcccHHHHHHHHHhcCCCEEeCCCcCCHHHHHHHHHcCCCC
Confidence            9988899999999999999999999883       2 2345589999999999999999999999999999999766689


Q ss_pred             EEEecc
Q 020428          228 SVMAAR  233 (326)
Q Consensus       228 ~VmiGr  233 (326)
                      .|++--
T Consensus       296 ~v~ik~  301 (390)
T 3ugv_A          296 LVMPDF  301 (390)
T ss_dssp             EECCBH
T ss_pred             EEEeCc
Confidence            887653

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=98.53  E-value=2e-06  Score=81.39  Aligned_cols=124  Identities=13%  Similarity=0.129  Sum_probs=103.2

Q ss_pred             CHHHHHHHHH-Hhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           86 DAVRALTAAK-MVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        86 ~~~~~~~aa~-~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      +++++.+.++ .+.. |+..+.+..|+|               +++.-.+.++++|+++  +.++.+....+|+.+++++
T Consensus       151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~  215 (372)
T 3tj4_A          151 TLEDLLAGSARAVEEDGFTRLKIKVGHD---------------DPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQR  215 (372)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEEECCCS---------------SHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHH
Confidence            7887776665 4557 999999998875               2456678899999987  6789999888999999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++.+++.|+++|-       +. ..+.+++..+++++.+++||++.+.+.|.+++.++++...+|.|++-
T Consensus       216 ~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k  278 (372)
T 3tj4_A          216 FCAAAKDLDIYWFE-------EP-LWYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPD  278 (372)
T ss_dssp             HHHHTTTSCEEEEE-------SC-SCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             HHHHHhhcCCCEEE-------CC-CCchhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeC
Confidence            99999999988873       22 24558999999999999999999999999999999976668988764

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=98.52  E-value=3.2e-06  Score=80.23  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=108.2

Q ss_pred             cEEEEECCCCHHHHHHHHHH-hhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTSDAVRALTAAKM-VCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~-~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+-..++..+++.+.+.++. +.+ ||..+-+..|++               +++.-.+.++++|+++  ++++.+....
T Consensus       158 ~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l~vDaN~  222 (383)
T 3toy_A          158 PAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG---------------DLATDEAMIKGLRALLGPDIALMLDFNQ  222 (383)
T ss_dssp             EEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred             EEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence            44445545688887766665 456 999999988753               3566677889999887  6789999888


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.|+++|-       + +..+.+++..+++++.+++||++...+.+.+++.++++...+|.|++-
T Consensus       223 ~~~~~~A~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik  294 (383)
T 3toy_A          223 SLDPAEATRRIARLADYDLTWIE-------E-PVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPD  294 (383)
T ss_dssp             CSCHHHHHHHHHHHGGGCCSEEE-------C-CSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCC
T ss_pred             CCCHHHHHHHHHHHHhhCCCEEE-------C-CCCcchHHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            99999999999999999999983       2 234558999999999999999999999999999999976668988764

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=98.51  E-value=2.5e-06  Score=80.53  Aligned_cols=132  Identities=15%  Similarity=0.192  Sum_probs=106.6

Q ss_pred             cEEEEECCCCHHHHHHHHHH-hhc-CCCEEEEccCCCccccccccccccccCChH-HHHHHHHHHhhcc--cCcEEEEec
Q 020428           77 HVVFQMGTSDAVRALTAAKM-VCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPE-LIHDILTMLKRNL--DVPVTCKIR  151 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~-~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~-~~~~iv~~v~~~~--~~pv~vK~r  151 (326)
                      |+...++..+++.+.+.++. +.+ ||..+-+..|..                +. .-.+.++++|+++  +.++.+...
T Consensus       130 ~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~----------------~~~~d~~~v~avR~a~g~~~~l~vDan  193 (367)
T 3dg3_A          130 RVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRR----------------PVQLDTAVVRALRERFGDAIELYVDGN  193 (367)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCS----------------STHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCC----------------hhhhHHHHHHHHHHHhCCCCEEEEECC
Confidence            45556666788888766655 456 999999987741                22 4456788888877  678889888


Q ss_pred             CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          152 LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      -+|+.+++.++++.+++.|+++|.       + +..+.+++..+++++.+++||++.+.+.+.+++.++++...+|.|++
T Consensus       194 ~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  265 (367)
T 3dg3_A          194 RGWSAAESLRAMREMADLDLLFAE-------E-LCPADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGGSATAISI  265 (367)
T ss_dssp             TCSCHHHHHHHHHHTTTSCCSCEE-------S-CSCTTSHHHHHHHHHHCSSCEEECTTCSSHHHHHHHHHHTSCSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhCCCEEE-------C-CCCcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence            899999999999999999999884       2 23455899999999999999999999999999999997666899987


Q ss_pred             c
Q 020428          232 A  232 (326)
Q Consensus       232 G  232 (326)
                      =
T Consensus       266 k  266 (367)
T 3dg3_A          266 K  266 (367)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A

Probab=98.51  E-value=3e-06  Score=80.54  Aligned_cols=139  Identities=11%  Similarity=0.081  Sum_probs=113.3

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEec
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIR  151 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r  151 (326)
                      ..|+-..++..+++++.+.++.+. .||..+.+..|||..           ..+++.-.+.++++|+++  ++++.+...
T Consensus       134 ~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~-----------~~~~~~d~~~v~avR~a~G~~~~L~vDaN  202 (386)
T 3fv9_G          134 PVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA-----------EGGPALDAERITACLADRQPGEWYLADAN  202 (386)
T ss_dssp             CBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT-----------TTHHHHHHHHHHHHTTTCCTTCEEEEECT
T ss_pred             ceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC-----------CCCHHHHHHHHHHHHHHcCCCCeEEEECC
Confidence            457777788889999888877665 499999999998732           124677778899999987  578899998


Q ss_pred             CCCChHHHHHHHHHH-HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          152 LLKSSQDTVELARRI-EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l-~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .+|+.+++.++++.+ ++.++ +|-       +..   .+++..+++++.+++||.+...+.+..++.++++...+|.|+
T Consensus       203 ~~~~~~~A~~~~~~l~~~~~i-~iE-------eP~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~  271 (386)
T 3fv9_G          203 NGLTVEHALRMLSLLPPGLDI-VLE-------APC---ASWAETKSLRARCALPLLLDELIQTETDLIAAIRDDLCDGVG  271 (386)
T ss_dssp             TCCCHHHHHHHHHHSCSSCCC-EEE-------CCC---SSHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred             CCCCHHHHHHHHHHhhccCCc-EEe-------cCC---CCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEE
Confidence            899999999999999 77777 652       222   289999999999999999999999999999999766789998


Q ss_pred             eccch
Q 020428          231 AARGA  235 (326)
Q Consensus       231 iGr~~  235 (326)
                      +--+-
T Consensus       272 ~k~~~  276 (386)
T 3fv9_G          272 LKVSK  276 (386)
T ss_dssp             EEHHH
T ss_pred             ECccc
Confidence            86443

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=98.50  E-value=2e-06  Score=83.20  Aligned_cols=154  Identities=12%  Similarity=0.117  Sum_probs=114.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccc-----------ccccc------------ccccc--cCChHH
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSF-----------SVSGG------------MGAAL--LSKPEL  130 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~-----------~~~~~------------~G~~l--~~~p~~  130 (326)
                      |+-..+.+.+++++.+.++.+. +||..+-+.+|-....           +..+.            -|..+  ..+.+.
T Consensus       146 ~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (440)
T 3t6c_A          146 ALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKS  225 (440)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHH
Confidence            4444567788999888777665 4999999988743210           00000            00000  011456


Q ss_pred             HHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428          131 IHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN  208 (326)
Q Consensus       131 ~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n  208 (326)
                      ..+.++++|+++  ++++.+....+|+.++++++++.+++.|+.+|-       +. ..+.+++.++++++.+++||++.
T Consensus       226 d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~d  297 (440)
T 3t6c_A          226 IPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLE-------DP-VAPENTEWLKMLRQQSSTPIAMG  297 (440)
T ss_dssp             HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CS-SCGGGGGGHHHHHHHCCSCEEEC
T ss_pred             HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------CC-CChhhHHHHHHHHhhcCCCEEeC
Confidence            678899999987  678999999899999999999999999999984       22 23557888999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.+.+.+++.++++...+|.|++--+-.+.
T Consensus       298 E~~~~~~~~~~~i~~~a~d~v~~k~~~~GG  327 (440)
T 3t6c_A          298 ELFVNVNEWKPLIDNKLIDYIRCHISSIGG  327 (440)
T ss_dssp             TTCCSHHHHHHHHHTTCCSEECCCGGGGTS
T ss_pred             cccCCHHHHHHHHHcCCccceeechhhhCC
Confidence            999999999999976668999887554443

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=98.48  E-value=5.3e-06  Score=74.71  Aligned_cols=121  Identities=18%  Similarity=0.192  Sum_probs=86.5

Q ss_pred             HhhcCCCEEEEcc--CCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecC-CC------ChHHHHHHH
Q 020428           96 MVCKDVAAIDINM--GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRL-LK------SSQDTVELA  163 (326)
Q Consensus        96 ~~~~~~d~idlN~--gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~-g~------~~~~~~e~a  163 (326)
                      .+..|+++|++..  |.               .+.+.+.+.+.++++.+   ++|+.+=..+ |.      +++.....+
T Consensus       101 Ai~~Ga~~v~~~~nig~---------------~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~  165 (263)
T 1w8s_A          101 AVSLGASAVGYTIYPGS---------------GFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAA  165 (263)
T ss_dssp             HHHTTCSEEEEEECTTS---------------TTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHH
T ss_pred             HHHCCCCEEEEEEecCC---------------cCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHH
Confidence            3445999998754  41               12334444444444433   7888776544 11      445555667


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCC-cEEEeCCCC--CHHHHHHHHH---hcCCcEEEeccchhc
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSI-PVIANGDVF--EYDDFQRIKT---AAGASSVMAARGALW  237 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~i-PVi~nGgI~--s~~d~~~~l~---~~Gad~VmiGr~~l~  237 (326)
                      +...++|+|+|-+.  +       +.+.+.++++++.+++ ||++.|||.  |.+++.++++   +.||+|+.+||+++.
T Consensus       166 ~~a~~~GAD~vkt~--~-------~~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~  236 (263)
T 1w8s_A          166 RIALELGADAMKIK--Y-------TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ  236 (263)
T ss_dssp             HHHHHHTCSEEEEE--C-------CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred             HHHHHcCCCEEEEc--C-------CCCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcC
Confidence            89999999999876  1       1267889999988887 999999999  9999888773   489999999999887


Q ss_pred             Ccc
Q 020428          238 NAS  240 (326)
Q Consensus       238 ~P~  240 (326)
                      .|.
T Consensus       237 ~~d  239 (263)
T 1w8s_A          237 RRD  239 (263)
T ss_dssp             STT
T ss_pred             CcC
Confidence            753

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*

Probab=98.48  E-value=5.3e-06  Score=78.62  Aligned_cols=134  Identities=15%  Similarity=0.209  Sum_probs=109.0

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+-..++..+++++.+.++... .||..+.+..|.                +++.-.+.++++|+++  ++++.+...-+
T Consensus       133 ~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~----------------~~~~d~~~v~avR~a~g~~~~L~vDaN~~  196 (379)
T 3r0u_A          133 VTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA----------------DFNRDIQLLKALDNEFSKNIKFRFDANQG  196 (379)
T ss_dssp             EBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHCCTTSEEEEECTTC
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC----------------CHHHHHHHHHHHHHhcCCCCeEEEeCCCC
Confidence            4445666678988887776654 499999998762                3667778899999987  57899998889


Q ss_pred             CChHHHHHHHHHHHH--cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          154 KSSQDTVELARRIEK--TGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      |+.++++++++.+++  .|+.+|-       + +..+.+++..+++++.+++||.+...+.|..++.++++...+|.|++
T Consensus       197 w~~~~A~~~~~~l~~~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  268 (379)
T 3r0u_A          197 WNLAQTKQFIEEINKYSLNVEIIE-------Q-PVKYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDEQACNMINI  268 (379)
T ss_dssp             CCHHHHHHHHHHHHTSCCCEEEEE-------C-CSCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSEEEE
T ss_pred             cCHHHHHHHHHHHhhcCCCcEEEE-------C-CCCcccHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEE
Confidence            999999999999999  7777763       2 23455899999999999999999999999999999996556899988


Q ss_pred             ccc
Q 020428          232 ARG  234 (326)
Q Consensus       232 Gr~  234 (326)
                      --+
T Consensus       269 k~~  271 (379)
T 3r0u_A          269 KLA  271 (379)
T ss_dssp             CHH
T ss_pred             Ccc
Confidence            643

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.47  E-value=3.8e-06  Score=81.81  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=94.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      |..++.+.++..++..|+|.|=|....               -..+.+.+.++.+++.. +++|.+---      .+.+-
T Consensus       277 gv~~d~~eR~~aLv~AGvD~iviD~ah---------------Ghs~~v~~~i~~ik~~~p~~~viaGNV------aT~e~  335 (556)
T 4af0_A          277 GTRPGDKDRLKLLAEAGLDVVVLDSSQ---------------GNSVYQIEFIKWIKQTYPKIDVIAGNV------VTREQ  335 (556)
T ss_dssp             CSSHHHHHHHHHHHHTTCCEEEECCSC---------------CCSHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH
T ss_pred             ccCccHHHHHHHHHhcCCcEEEEeccc---------------cccHHHHHHHHHHHhhCCcceEEeccc------cCHHH
Confidence            445677888888777799987775421               12356778889998876 677766432      34566


Q ss_pred             HHHHHHcCCcEEEEe------ecccCCCCCCcCCHHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          163 ARRIEKTGVSALAVH------GRKVADRPRDPAKWGEIADIV---AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       163 a~~l~~~G~d~i~vh------~r~~~~~~~~~~~~~~i~~i~---~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ++.|.++|+|.|-|-      .-|+.....+.+....+.+++   +..++|||+-|||.+.-|+.+++ ..|||.||+|+
T Consensus       336 a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAl-aaGAd~VMlGs  414 (556)
T 4af0_A          336 AAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKAL-ALGASAVMMGG  414 (556)
T ss_dssp             HHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEEST
T ss_pred             HHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHh-hcCCCEEEEch
Confidence            788889999999873      123333333445566665554   45689999999999999999999 69999999998


Q ss_pred             chhc
Q 020428          234 GALW  237 (326)
Q Consensus       234 ~~l~  237 (326)
                      -|-.
T Consensus       415 llAG  418 (556)
T 4af0_A          415 LLAG  418 (556)
T ss_dssp             TTTT
T ss_pred             hhcc
Confidence            6654

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=98.46  E-value=1.6e-06  Score=77.78  Aligned_cols=135  Identities=13%  Similarity=0.106  Sum_probs=94.8

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +.|+..+=|-.++.+..+   ...-|+|+|=|..              ..+.  +.+.++++..+. .++.+.|-+.   
T Consensus       106 ~lPvl~kdfI~d~~qi~~---a~~~GAD~VlL~~--------------~~l~--~~l~~l~~~a~~-lGl~~lvev~---  162 (254)
T 1vc4_A          106 DLPLLRKDFVVDPFMLEE---ARAFGASAALLIV--------------ALLG--ELTGAYLEEARR-LGLEALVEVH---  162 (254)
T ss_dssp             CSCEEEESCCCSHHHHHH---HHHTTCSEEEEEH--------------HHHG--GGHHHHHHHHHH-HTCEEEEEEC---
T ss_pred             CCCEEECCcCCCHHHHHH---HHHcCCCEEEECc--------------cchH--HHHHHHHHHHHH-CCCeEEEEEC---
Confidence            457766656677765433   2224899988753              2333  567777776554 3544444442   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +   ..| +..+.+.|++.|-++.|...   .-..|++...++.+.+     ++|+|+.|||.|++|+.++. . |+|+|
T Consensus       163 ~---~~E-~~~a~~~gad~IGvn~~~l~---~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~-~-Ga~gv  233 (254)
T 1vc4_A          163 T---ERE-LEIALEAGAEVLGINNRDLA---TLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALE-G-LFDAV  233 (254)
T ss_dssp             S---HHH-HHHHHHHTCSEEEEESBCTT---TCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTT-T-TCSEE
T ss_pred             C---HHH-HHHHHHcCCCEEEEccccCc---CCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHH-c-CCCEE
Confidence            1   222 45677789999999988643   2355778888887766     79999999999999999999 6 99999


Q ss_pred             EeccchhcCccc
Q 020428          230 MAARGALWNASI  241 (326)
Q Consensus       230 miGr~~l~~P~l  241 (326)
                      .||++++..++.
T Consensus       234 lVGsAl~~~~d~  245 (254)
T 1vc4_A          234 LIGTSLMRAPDL  245 (254)
T ss_dssp             EECHHHHTSSCH
T ss_pred             EEeHHHcCCCCH
Confidence            999999987653

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=98.44  E-value=8.8e-07  Score=77.81  Aligned_cols=81  Identities=11%  Similarity=0.066  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .++....|...+-.|...|-+.+ +..     +.+.+.++++++.+ ++||++.|||+|++++++++  .|||+|++|++
T Consensus       139 ~e~~~~~a~~a~~~g~~~VYld~-sG~-----~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~--~gAD~VVVGSa  210 (228)
T 3vzx_A          139 MDDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA--EHADVIVVGNA  210 (228)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH--TTCSEEEECTH
T ss_pred             HHHHHHHHHHHHHcCCCEEEecC-CCC-----cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH--hCCCEEEEChH
Confidence            46677777777888899998877 322     22799999999999 79999999999999999998  49999999999


Q ss_pred             hhcCcccccc
Q 020428          235 ALWNASIFSS  244 (326)
Q Consensus       235 ~l~~P~lf~~  244 (326)
                      +..||.++.+
T Consensus       211 ~v~~p~~~~~  220 (228)
T 3vzx_A          211 VYEDFDRALK  220 (228)
T ss_dssp             HHHCHHHHHH
T ss_pred             HhcCHHHHHH
Confidence            9999988765

>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A

Probab=98.44  E-value=5.7e-06  Score=78.67  Aligned_cols=133  Identities=14%  Similarity=0.199  Sum_probs=105.2

Q ss_pred             CHHHHHH-HHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           86 DAVRALT-AAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        86 ~~~~~~~-aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      ++++..+ +++.. ..||..+-+..|++..        ......|+...+.++++|+++  ++++.+....+|+.+++++
T Consensus       146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~~--------~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~  217 (388)
T 3tcs_A          146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVG--------RNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIE  217 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCEEEEECSCTTC--------TTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEccCCCcc--------cccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHH
Confidence            5655444 44443 3599999999987642        122234667778899999987  6789999998999999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +++.+++.|+.+|-       + +..+.+++..+++++.+++||.+...+.|..++.++++...+|.|++--+
T Consensus       218 ~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~  282 (388)
T 3tcs_A          218 VGHMLQDHGFCHFE-------E-PCPYWELAQTKQVTDALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDIL  282 (388)
T ss_dssp             HHHHHHHTTCCEEE-------C-CSCTTCHHHHHHHHHHCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHH
T ss_pred             HHHHHhhcCCeEEE-------C-CCCccCHHHHHHHHHhcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCcc
Confidence            99999999999872       2 23455899999999999999999999999999999997667899887644

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*

Probab=98.44  E-value=4.7e-06  Score=79.78  Aligned_cols=138  Identities=14%  Similarity=0.136  Sum_probs=105.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCcccc---ccccccc----cccC---ChHHHHHHHHHHhhcc--cCcEEEEec
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFS---VSGGMGA----ALLS---KPELIHDILTMLKRNL--DVPVTCKIR  151 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~---~~~~~G~----~l~~---~p~~~~~iv~~v~~~~--~~pv~vK~r  151 (326)
                      .+++++.+.++.+.+ ||..+-+..+.+....   -+.|.+.    ..-.   ..++..++++++|+++  ++++.+...
T Consensus       142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN  221 (409)
T 3go2_A          142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLN  221 (409)
T ss_dssp             CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            368888887776654 9999999773221110   0001111    1111   1356778899999987  688999988


Q ss_pred             CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          152 LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      .+|+.++++++++.+++.|+++|..          ...+++..+++++.+++||++.+.+.+++++.++++...+|.|++
T Consensus       222 ~~~~~~~A~~~~~~L~~~~i~~iE~----------P~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  291 (409)
T 3go2_A          222 FNAKPEGYLKILRELADFDLFWVEI----------DSYSPQGLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDVAIV  291 (409)
T ss_dssp             TCSCHHHHHHHHHHTTTSCCSEEEC----------CCSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCHHHHHHHHHHHhhcCCeEEEe----------CcCCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEe
Confidence            8999999999999999999999972          124899999999999999999999999999999997666899987


Q ss_pred             c
Q 020428          232 A  232 (326)
Q Consensus       232 G  232 (326)
                      -
T Consensus       292 k  292 (409)
T 3go2_A          292 D  292 (409)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=98.43  E-value=1.6e-06  Score=81.98  Aligned_cols=126  Identities=10%  Similarity=0.148  Sum_probs=100.7

Q ss_pred             EEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh
Q 020428           80 FQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS  156 (326)
Q Consensus        80 vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~  156 (326)
                      ..++. .+++++.+.++.+.+ ||+.+.++.|                  |+...+.++++|+++ ++++.+....+|+.
T Consensus       141 ~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~------------------~~~d~~~v~avr~a~~~~~l~vDan~~~~~  202 (375)
T 1r0m_A          141 VSLGIQADEQATVDLVRRHVEQGYRRIKLKIK------------------PGWDVQPVRATREAFPDIRLTVDANSAYTL  202 (375)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHTTCSCEEEECB------------------TTBSHHHHHHHHHHCTTSCEEEECTTCCCG
T ss_pred             EEecCCCCHHHHHHHHHHHHHhcccEEEEecC------------------hHHHHHHHHHHHHHcCCCeEEEeCCCCCCH
Confidence            34443 488888887776654 9999999763                  133345577777765 67888888888998


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++ +++++.+++.|+++|.       +.. .+.+++..+++++.+++||.+.+.+++.+++.++++...+|.|++=
T Consensus       203 ~~-~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik  269 (375)
T 1r0m_A          203 AD-AGRLRQLDEYDLTYIE-------QPL-AWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINLK  269 (375)
T ss_dssp             GG-HHHHHTTGGGCCSCEE-------CCS-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred             HH-HHHHHHHHhCCCcEEE-------CCC-CcccHHHHHHHHHhCCCCEEecCccCCHHHHHHHHHhCCCCEEEEC
Confidence            89 9999999999999984       332 4568999999999999999999999999999999977779999883

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=98.43  E-value=9.7e-07  Score=77.99  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=99.5

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCEEEEcc--CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAAIDINM--GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~--gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      ++..|...|...+.+..+.+.+ |+|.+.+-.  |.-.+             +..+-.++++++++.++.|+.+-+-. .
T Consensus         7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp-------------~~~~g~~~v~~lr~~~~~~~~vhlmv-~   72 (230)
T 1tqj_A            7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVP-------------NITIGPLIVDAIRPLTKKTLDVHLMI-V   72 (230)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-------------CBCBCHHHHHHHGGGCCSEEEEEEES-S
T ss_pred             EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCc-------------chhhhHHHHHHHHhhcCCcEEEEEEc-c
Confidence            6677878888888888888876 899765543  22111             11222367888888777788765544 3


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeec--ccC---------------------------------------------CCC--
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGR--KVA---------------------------------------------DRP--  185 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r--~~~---------------------------------------------~~~--  185 (326)
                      ++   .++++.+.++|+|++++|.-  ..+                                             ...  
T Consensus        73 dp---~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~gg  149 (230)
T 1tqj_A           73 EP---EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGG  149 (230)
T ss_dssp             SG---GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----
T ss_pred             CH---HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCC
Confidence            33   34567777888888888865  221                                             000  


Q ss_pred             --CCcCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          186 --RDPAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       186 --~~~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                        ..+..++.++++++..     ++||.+-|||+. +++.++. ..|||++.+||+++..+.
T Consensus       150 q~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~-~aGad~vvvGSai~~a~d  209 (230)
T 1tqj_A          150 QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVL-EAGANAIVAGSAVFNAPN  209 (230)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHH-HHTCCEEEESHHHHTSSC
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHH-HcCCCEEEECHHHHCCCC
Confidence              0123467788888776     899999999997 8898888 689999999999876543

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=98.40  E-value=4e-06  Score=79.92  Aligned_cols=127  Identities=11%  Similarity=-0.009  Sum_probs=101.6

Q ss_pred             HHHHHHHHhh-cCCCEEEEc-cCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCC-ChHHHHHHH
Q 020428           89 RALTAAKMVC-KDVAAIDIN-MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLK-SSQDTVELA  163 (326)
Q Consensus        89 ~~~~aa~~~~-~~~d~idlN-~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~-~~~~~~e~a  163 (326)
                      ++.+.++... .||..+-++ .|-+             ..+++.-.++++++|+++  ++++.+....+| +.+++++++
T Consensus       155 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~  221 (394)
T 3mqt_A          155 AYKPLIAKAKERGAKAVKVCIIPND-------------KVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTF  221 (394)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCCT-------------TSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEecccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHH
Confidence            4544555444 599999984 3311             135778888999999987  678999988899 999999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.+++.|+++|.       +. ..+.+++..+++++.+++||++.+.+.|++++.++++...+|.|++--+-.
T Consensus       222 ~~L~~~~i~~iE-------eP-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~  286 (394)
T 3mqt_A          222 RQLEDIDLYFIE-------AC-LQHDDLIGHQKLAAAINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRC  286 (394)
T ss_dssp             HHTGGGCCSEEE-------SC-SCTTCHHHHHHHHHHSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTS
T ss_pred             HHHhhcCCeEEE-------CC-CCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCcccc
Confidence            999999999984       22 245589999999999999999999999999999999777799998864433

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=98.40  E-value=2.2e-06  Score=75.42  Aligned_cols=144  Identities=13%  Similarity=0.122  Sum_probs=93.2

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCEEEEcc--CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAAIDINM--GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~--gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      ++..|.+.|++.+.+.++.+.+ |++.|++..  |.-.++.             ....++++++++.++.|+.+-+-.. 
T Consensus        13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~-------------~~~~~~i~~l~~~~~~~~~v~l~vn-   78 (230)
T 1rpx_A           13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-------------TIGPLVVDSLRPITDLPLDVHLMIV-   78 (230)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-------------CCCHHHHHHHGGGCCSCEEEEEESS-
T ss_pred             EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCccccc-------------ccCHHHHHHHHhccCCcEEEEEEec-
Confidence            5556677788888888888776 888777753  2111110             1113566777776666665544322 


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeec--ccC-----------------------------C----------------CCCC
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGR--KVA-----------------------------D----------------RPRD  187 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r--~~~-----------------------------~----------------~~~~  187 (326)
                      +   ..+.++.+.++|+|+|++|+-  ...                             .                .+.+
T Consensus        79 d---~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g  155 (230)
T 1rpx_A           79 E---PDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGG  155 (230)
T ss_dssp             S---HHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSS
T ss_pred             C---HHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCC
Confidence            2   335677777889999988876  210                             0                0001


Q ss_pred             -cCCH---HHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          188 -PAKW---GEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       188 -~~~~---~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                       ..+|   +.++++++.+     ++|+++.|||+ ++.+.+++ ..|||+|.+||++...+.
T Consensus       156 ~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~-~aGad~vvvgSaI~~a~d  215 (230)
T 1rpx_A          156 QSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVI-EAGANALVAGSAVFGAPD  215 (230)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHH-HHTCCEEEESHHHHTSSC
T ss_pred             ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HcCCCEEEEChhhhCCCC
Confidence             1233   4456666655     79999999998 78888888 589999999999876443

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=98.39  E-value=2.5e-06  Score=80.42  Aligned_cols=126  Identities=10%  Similarity=0.150  Sum_probs=100.3

Q ss_pred             EEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh
Q 020428           80 FQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS  156 (326)
Q Consensus        80 vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~  156 (326)
                      ..++. .+++++.+.++.+.+ ||+.+.++.|                  |+...+.++++|+++ ++++.+....+|+.
T Consensus       134 ~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~------------------~~~d~~~v~avr~a~~~~~l~vDan~~~~~  195 (369)
T 2zc8_A          134 VSLGIQPSVEDTLRVVERHLEEGYRRIKLKIK------------------PGWDYEVLKAVREAFPEATLTADANSAYSL  195 (369)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHTTCSCEEEECB------------------TTBSHHHHHHHHHHCTTSCEEEECTTCCCG
T ss_pred             EEecCCCCHHHHHHHHHHHHHhhhheeeeecC------------------hhHHHHHHHHHHHHcCCCeEEEecCCCCCH
Confidence            44443 478888887776654 9999999763                  133345577777765 67888888888998


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++ +++++.+++.|+++|.       +. ..+.+++..+++++.+++||.+.+.+.+.+++.++++...+|.|++=
T Consensus       196 ~~-~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik  262 (369)
T 2zc8_A          196 AN-LAQLKRLDELRLDYIE-------QP-LAYDDLLDHAKLQRELSTPICLDESLTGAEKARKAIELGAGRVFNVK  262 (369)
T ss_dssp             GG-HHHHHGGGGGCCSCEE-------CC-SCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             HH-HHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHhhCCCCEEEcCccCCHHHHHHHHHhCCCCEEEEc
Confidence            88 9999999999999886       22 23568999999999999999999999999999999976668999884

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}

Probab=98.37  E-value=2.1e-06  Score=82.66  Aligned_cols=150  Identities=9%  Similarity=0.079  Sum_probs=107.7

Q ss_pred             cEEEEECCCCHHHHHHHHHH-hhcCCCEEEEccCCCccccc---cccccc--------c--------ccCChHHHHHHHH
Q 020428           77 HVVFQMGTSDAVRALTAAKM-VCKDVAAIDINMGCPKSFSV---SGGMGA--------A--------LLSKPELIHDILT  136 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~---~~~~G~--------~--------l~~~p~~~~~iv~  136 (326)
                      |+-....+.+++++.+.++. +.+||..+-+..|.|.....   ..+.+-        .        .....++..++++
T Consensus       140 ~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~  219 (426)
T 4e4f_A          140 MVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKLFE  219 (426)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHHHH
T ss_pred             eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence            45555667788877666554 44599999999887642110   001000        0        0011245678899


Q ss_pred             HHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCH
Q 020428          137 MLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEY  214 (326)
Q Consensus       137 ~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~  214 (326)
                      ++|+++  ++++.+...-+|+.++++++++.++++|+++|.       + +..+.+++..+++++.+++||++.+.+.++
T Consensus       220 avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~  291 (426)
T 4e4f_A          220 AVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWME-------D-PTPAENQACFRLIRQHTVTPIAVGEVFNSI  291 (426)
T ss_dssp             HHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------C-CSCCSSGGGGHHHHTTCCSCEEECTTCCSG
T ss_pred             HHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------C-CCChHHHHHHHHHHhcCCCCEEeCCCcCCH
Confidence            999988  689999988899999999999999999999984       2 224557888899999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEeccc
Q 020428          215 DDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       215 ~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +++.++++...+|.|++--+
T Consensus       292 ~~~~~~i~~ga~d~v~~k~~  311 (426)
T 4e4f_A          292 WDCKQLIEEQLIDYIRTTIT  311 (426)
T ss_dssp             GGTHHHHHTTCCSEECCCTT
T ss_pred             HHHHHHHHcCCCCEEEeCcc
Confidence            99999997666899987543

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=98.36  E-value=6.5e-06  Score=78.43  Aligned_cols=125  Identities=9%  Similarity=-0.053  Sum_probs=100.2

Q ss_pred             HHHHHHHHhh-cCCCEEEEc-cCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCC-ChHHHHHHH
Q 020428           89 RALTAAKMVC-KDVAAIDIN-MGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLK-SSQDTVELA  163 (326)
Q Consensus        89 ~~~~aa~~~~-~~~d~idlN-~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~-~~~~~~e~a  163 (326)
                      ++.+.++... .||..+-++ .|.+             ..+++.-.+.++++|+++  ++++.+....+| +.+++++++
T Consensus       160 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~  226 (394)
T 3mkc_A          160 GYAPLLEKAKAHNIRAVKVCVPIKA-------------DWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLL  226 (394)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCTTC-------------CCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEeCccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHH
Confidence            4554555444 599999983 4321             135777888999999987  678999888899 999999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +.+++.|+++|.       + +..+.+++..+++++.+++||++.+.+.|++++.++++...+|.|++--+
T Consensus       227 ~~L~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~  289 (394)
T 3mkc_A          227 NSIEDLELYFAE-------A-TLQHDDLSGHAKLVENTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYN  289 (394)
T ss_dssp             HHTGGGCCSEEE-------S-CSCTTCHHHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTT
T ss_pred             HHhhhcCCeEEE-------C-CCCchhHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCcc
Confidence            999999999984       2 22455899999999999999999999999999999997666899987643

>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}

Probab=98.34  E-value=7.4e-06  Score=77.97  Aligned_cols=132  Identities=11%  Similarity=0.074  Sum_probs=107.0

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~  152 (326)
                      |+-..++..+++++.+.++... .||..+.+..|++               +++.-.+.++++|+++   ++++.+....
T Consensus       155 ~~y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~---------------~~~~d~~~v~avR~a~gg~~~~L~vDaN~  219 (391)
T 4e8g_A          155 PSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR---------------PVEIDIETVRKVWERIRGTGTRLAVDGNR  219 (391)
T ss_dssp             ECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTTTCEEEEECTT
T ss_pred             EEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC---------------CHHHHHHHHHHHHHHhCCCCCeEEEeCCC
Confidence            4445667778998888777654 4999999998863               3556667788887765   4678888888


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+..++.++++.+++.++ +|       +|.   ..+++..+++++.+++||.+...+.+..++.++++...+|.|++-
T Consensus       220 ~w~~~~A~~~~~~L~~~~i-~i-------EeP---~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik  288 (391)
T 4e8g_A          220 SLPSRDALRLSRECPEIPF-VL-------EQP---CNTLEEIAAIRGRVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMK  288 (391)
T ss_dssp             CCCHHHHHHHHHHCTTSCE-EE-------ESC---SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCHHHHHHHHHHHhhcCe-EE-------ecC---CccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence            9999999999999999988 76       222   348999999999999999999999999999999976668999886


Q ss_pred             cc
Q 020428          233 RG  234 (326)
Q Consensus       233 r~  234 (326)
                      -+
T Consensus       289 ~~  290 (391)
T 4e8g_A          289 LT  290 (391)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=98.34  E-value=7.8e-06  Score=72.13  Aligned_cols=130  Identities=12%  Similarity=0.039  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCC-CChHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLL-KSSQDTVELAR  164 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g-~~~~~~~e~a~  164 (326)
                      ...++-..+..|+|.||+.+          ..|+...    .+.+-+.++++.+   +.|+-|=+-.+ .++++....++
T Consensus        90 k~~e~~~Av~~GAdEID~vi----------nig~~~~----~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~r  155 (234)
T 1n7k_A           90 KLVEAQTVLEAGATELDVVP----------HLSLGPE----AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVD  155 (234)
T ss_dssp             HHHHHHHHHHHTCCEEEECC----------CGGGCHH----HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEec----------cchHHHH----HHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHH
Confidence            34444455556999999864          2332222    4555556666655   35653323222 35677888889


Q ss_pred             HHHHcCCcEEEEeecccCCCCC-CcCCHHHHHH--HHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc--EEEeccchhc
Q 020428          165 RIEKTGVSALAVHGRKVADRPR-DPAKWGEIAD--IVAALSIPVIANGDVFEYDDFQRIKTAAGAS--SVMAARGALW  237 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~--i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad--~VmiGr~~l~  237 (326)
                      ...++|+|+|-..    .+... +.+..+.++.  +++.+++||-++|||+|.+++.+++ +.|++  |+..|+.++.
T Consensus       156 ia~eaGADfVKTs----TG~~~~~gAt~~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i-~aGa~RiG~S~g~~I~~  228 (234)
T 1n7k_A          156 SSRRAGADIVKTS----TGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAV-GAGADIIGTSSAVKVLE  228 (234)
T ss_dssp             HHHHTTCSEEESC----CSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHH-HTTCSEEEETTHHHHHH
T ss_pred             HHHHhCCCEEEeC----CCCCCCCCCCHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHH-HcCccccchHHHHHHHH
Confidence            9999999999543    22222 4556666666  7776679999999999999999999 69999  8877777654

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A

Probab=98.34  E-value=9.3e-06  Score=77.01  Aligned_cols=136  Identities=13%  Similarity=0.199  Sum_probs=107.2

Q ss_pred             cEEEEECCCCHHH-HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTSDAVR-ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~-~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+-..++..+++. ..++++.+.+ ||..+-+..|+.               +++.-.+.++++|+++  ++++.+....
T Consensus       139 ~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN~  203 (382)
T 3dgb_A          139 PVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAG---------------EVDRDLAHVIAIKKALGDSASVRVDVNQ  203 (382)
T ss_dssp             EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECCSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred             eEEEEecCCChHHHHHHHHHHHHhCCCCEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence            3333454445654 5566666664 899999987642               3456677889999887  4789999988


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+..++.++++.+++.|+.+|-       | +..+.|++..+++++.+++||.+...+.+..++.++++...+|.|++-
T Consensus       204 ~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k  275 (382)
T 3dgb_A          204 AWDEAVALRACRILGGNGIDLIE-------Q-PISRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREGAASVFALK  275 (382)
T ss_dssp             CBCHHHHHHHHHHHHTTTCCCEE-------C-CBCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred             CCCHHHHHHHHHHHhhcCcCeee-------C-CCCccCHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEec
Confidence            99999999999999999998873       2 234568999999999999999999999999999999977779999886


Q ss_pred             cch
Q 020428          233 RGA  235 (326)
Q Consensus       233 r~~  235 (326)
                      -.-
T Consensus       276 ~~~  278 (382)
T 3dgb_A          276 IAK  278 (382)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            443

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=98.33  E-value=5.5e-06  Score=79.11  Aligned_cols=134  Identities=8%  Similarity=0.042  Sum_probs=104.8

Q ss_pred             cEEEEEC-CCC--HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEe
Q 020428           77 HVVFQMG-TSD--AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKI  150 (326)
Q Consensus        77 p~~vQl~-g~~--~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~  150 (326)
                      |+-..++ ..+  ++.+.+.++.+.+ ||..+.++++ |                 +.-.+.++++|+++  ++++.+..
T Consensus       151 ~~~~s~g~~~~~~~e~~~~~a~~~~~~G~~~iKlKv~-~-----------------~~d~~~v~avR~a~G~~~~L~vDa  212 (400)
T 3mwc_A          151 ESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIK-P-----------------GWDVEPLQETRRAVGDHFPLWTDA  212 (400)
T ss_dssp             EBCEEECCCTTCCHHHHHHHHHHHHHHTCSCEEEECB-T-----------------TBSHHHHHHHHHHHCTTSCEEEEC
T ss_pred             EeeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEEeC-c-----------------chHHHHHHHHHHhcCCCCEEEEeC
Confidence            4444554 335  8888887776554 9999999873 1                 11245677888876  67899999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      ..+|+.++ +++++.+++.|+++|-       | +..+.+++..+++++.+++||.+...+.+.+++.++++...+|.|+
T Consensus       213 N~~w~~~~-~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~  283 (400)
T 3mwc_A          213 NSSFELDQ-WETFKAMDAAKCLFHE-------Q-PLHYEALLDLKELGERIETPICLDESLISSRVAEFVAKLGISNIWN  283 (400)
T ss_dssp             TTCCCGGG-HHHHHHHGGGCCSCEE-------S-CSCTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred             CCCCCHHH-HHHHHHHHhcCCCEEe-------C-CCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCCEEE
Confidence            88999988 9999999999999883       2 2345689999999999999999999999999999999766789998


Q ss_pred             eccchhc
Q 020428          231 AARGALW  237 (326)
Q Consensus       231 iGr~~l~  237 (326)
                      +--+-.+
T Consensus       284 ~k~~~~G  290 (400)
T 3mwc_A          284 IKIQRVG  290 (400)
T ss_dssp             ECHHHHT
T ss_pred             EcchhhC
Confidence            8654433

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=98.31  E-value=1.3e-05  Score=69.14  Aligned_cols=139  Identities=17%  Similarity=0.127  Sum_probs=85.8

Q ss_pred             CCcEEEEECCCC-HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           75 RNHVVFQMGTSD-AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        75 ~~p~~vQl~g~~-~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      +.|+++-+...| ++.+.+.+.  ..|+|+|-+|.+..                .+.+.++++.+++. +.++.+-+- .
T Consensus        53 ~~~i~~~l~~~di~~~~~~~a~--~~Gad~v~vh~~~~----------------~~~~~~~~~~~~~~-g~~~gv~~~-s  112 (207)
T 3ajx_A           53 DKIVFADMKTMDAGELEADIAF--KAGADLVTVLGSAD----------------DSTIAGAVKAAQAH-NKGVVVDLI-G  112 (207)
T ss_dssp             TSEEEEEEEECSCHHHHHHHHH--HTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECT-T
T ss_pred             CCeEEEEEEecCccHHHHHHHH--hCCCCEEEEeccCC----------------hHHHHHHHHHHHHc-CCceEEEEe-c
Confidence            357888776667 777654332  23899999886422                23344555555542 555433331 1


Q ss_pred             CChHHHHHHHHHHHHcCCcEE-EEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSAL-AVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i-~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .  .+..+.++.+.+.|+|++ ...+.+.......+.. +.+++++.. ++|+++.|||+ ++++.+++ ..|||+|.+|
T Consensus       113 ~--~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~-~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~-~aGad~vvvG  186 (207)
T 3ajx_A          113 I--EDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLN-GLLAAGEKA-RVPFSVAGGVK-VATIPAVQ-KAGAEVAVAG  186 (207)
T ss_dssp             C--SSHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTH-HHHHHHHHH-TSCEEEESSCC-GGGHHHHH-HTTCSEEEES
T ss_pred             C--CChHHHHHHHHHhCCCEEEEEecccccccCCCchH-HHHHHhhCC-CCCEEEECCcC-HHHHHHHH-HcCCCEEEEe
Confidence            2  122233456667799999 4445543211111222 445554443 79999999998 78888888 6999999999


Q ss_pred             cchhcCc
Q 020428          233 RGALWNA  239 (326)
Q Consensus       233 r~~l~~P  239 (326)
                      |+++..+
T Consensus       187 saI~~~~  193 (207)
T 3ajx_A          187 GAIYGAA  193 (207)
T ss_dssp             HHHHTSS
T ss_pred             eeccCCC
Confidence            9987644

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}

Probab=98.30  E-value=2.2e-05  Score=74.41  Aligned_cols=136  Identities=9%  Similarity=0.131  Sum_probs=104.8

Q ss_pred             cEEEEECCCCHHH-HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTSDAVR-ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~-~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+-..++..+++. ..++++.+.+ ||..+-+..|+.               +++.-.+.++++|+++  ++++.+....
T Consensus       138 ~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN~  202 (381)
T 3fcp_A          138 PVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGAR---------------ELATDLRHTRAIVEALGDRASIRVDVNQ  202 (381)
T ss_dssp             EBCEEECSSCHHHHHHHHHHHTC----CEEEEECCSS---------------CHHHHHHHHHHHHHHTCTTCEEEEECTT
T ss_pred             eeEEEecCCChHHHHHHHHHHHHhCCCCEEEEecCCC---------------ChHHHHHHHHHHHHHcCCCCeEEEECCC
Confidence            3434455556665 4455555654 899999987742               3556677899999987  4788888888


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+..++.++++.+++.|+.+|-       |. ..+.|++.++++++.+++||.+...+.|..++.++++...+|.|++-
T Consensus       203 ~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k  274 (381)
T 3fcp_A          203 AWDAATGAKGCRELAAMGVDLIE-------QP-VSAHDNAALVRLSQQIETAILADEAVATAYDGYQLAQQGFTGAYALK  274 (381)
T ss_dssp             CBCHHHHHHHHHHHHHTTCSEEE-------CC-BCTTCHHHHHHHHHHSSSEEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCHHHHHHHHHHHhhcCcccee-------CC-CCcccHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEec
Confidence            99999999999999999998872       22 34568999999999999999999999999999999976679999886


Q ss_pred             cch
Q 020428          233 RGA  235 (326)
Q Consensus       233 r~~  235 (326)
                      -+-
T Consensus       275 ~~~  277 (381)
T 3fcp_A          275 IAK  277 (381)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            443

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=98.29  E-value=4.1e-06  Score=72.94  Aligned_cols=142  Identities=11%  Similarity=0.177  Sum_probs=87.7

Q ss_pred             EEEEECCCCHHHHHHHHHHhhc-CCCEEEEcc--CC-CccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCK-DVAAIDINM--GC-PKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~--gc-P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      +...|...|+..+.+.++.+.+ |++.+.+-.  |. |.          .+-..+    ++++++++.++.|+.+-+-..
T Consensus         6 ~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~----------~~~~g~----~~i~~i~~~~~~~~~v~l~v~   71 (220)
T 2fli_A            6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVP----------NISFGA----DVVASMRKHSKLVFDCHLMVV   71 (220)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS----------CBCBCH----HHHHHHHTTCCSEEEEEEESS
T ss_pred             EEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC----------ccccCH----HHHHHHHHhCCCCEEEEEeec
Confidence            4455667788888888888876 788765542  32 11          011113    445666666666665544321


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-  187 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-  187 (326)
                       ++.   +.++.+.++|+|.+++|+-..+                                             ..+.+ 
T Consensus        72 -d~~---~~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~  147 (220)
T 2fli_A           72 -DPE---RYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ  147 (220)
T ss_dssp             -SGG---GGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC
T ss_pred             -CHH---HHHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCccc
Confidence             221   2346777778888888743210                                             00011 


Q ss_pred             cCCH---HHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          188 PAKW---GEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       188 ~~~~---~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      ...|   +.++++++.+     ++||++.|||+ ++++.+++ ..|+|+|.+||+++..+
T Consensus       148 ~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~-~~Gad~vvvGsai~~~~  205 (220)
T 2fli_A          148 AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACY-EAGANVFVAGSYLFKAS  205 (220)
T ss_dssp             CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHH-HHTCCEEEESHHHHTSS
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHH-HcCCCEEEEChHHhCCC
Confidence            1123   4456666554     79999999999 78898888 57999999999987654

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=98.29  E-value=4.5e-06  Score=73.47  Aligned_cols=140  Identities=10%  Similarity=0.107  Sum_probs=94.3

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .|+.+-|+.+||+.+.+.+..  .|+|+|-+|.+.+                ++.+.+.++.+++. ++.+.+-+.....
T Consensus        65 ~~~~v~lmv~d~~~~i~~~~~--agad~v~vH~~~~----------------~~~~~~~~~~i~~~-g~~igv~~~p~t~  125 (228)
T 1h1y_A           65 AYLDCHLMVTNPSDYVEPLAK--AGASGFTFHIEVS----------------RDNWQELIQSIKAK-GMRPGVSLRPGTP  125 (228)
T ss_dssp             SEEEEEEESSCGGGGHHHHHH--HTCSEEEEEGGGC----------------TTTHHHHHHHHHHT-TCEEEEEECTTSC
T ss_pred             CcEEEEEEecCHHHHHHHHHH--cCCCEEEECCCCc----------------ccHHHHHHHHHHHc-CCCEEEEEeCCCC
Confidence            478889999998776554433  4899999986522                11224556666554 6666655543222


Q ss_pred             hHHHHHHHHHHHHc--CCcEEEEeecccCC--CCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          156 SQDTVELARRIEKT--GVSALAVHGRKVAD--RPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       156 ~~~~~e~a~~l~~~--G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                          .+.++.+.+.  ++|+|.+.......  ..-.+..++.++++++.. ++||++.|||+. +.+.+++ ..|+|++.
T Consensus       126 ----~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~-~aGaD~vv  199 (228)
T 1h1y_A          126 ----VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAA-SAGANCIV  199 (228)
T ss_dssp             ----GGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHH-HHTCCEEE
T ss_pred             ----HHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHH-HcCCCEEE
Confidence                2334555565  89999885543321  111233456677888877 899999999987 8888888 57999999


Q ss_pred             eccchhcCcc
Q 020428          231 AARGALWNAS  240 (326)
Q Consensus       231 iGr~~l~~P~  240 (326)
                      +||+++..|.
T Consensus       200 vGsai~~~~d  209 (228)
T 1h1y_A          200 AGSSIFGAAE  209 (228)
T ss_dssp             ESHHHHTSSC
T ss_pred             ECHHHHCCCC
Confidence            9999876543

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=98.25  E-value=3.4e-05  Score=67.63  Aligned_cols=126  Identities=13%  Similarity=0.071  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE--ecCC-CChHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK--IRLL-KSSQDTVELARR  165 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK--~r~g-~~~~~~~e~a~~  165 (326)
                      ...++.. +..|+|.||+-+          .+|...-.+.+.+.+-+.++++.++- ..+|  +-.+ .+.++....++.
T Consensus        69 k~~E~~~-i~~GAdEID~Vi----------nig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~i  136 (226)
T 1vcv_A           69 RIALVSR-LAEVADEIDVVA----------PIGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDI  136 (226)
T ss_dssp             HHHHHHH-HTTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHH-HHCCCCEEEEec----------chhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHH
Confidence            4556666 767999999864          35555567888888889999888742 2445  3222 356778888999


Q ss_pred             HHHcCCcEEEEe-eccc-----CCCCCCcCCHHHHHHHHHh---cC--CcEEEeCCCCCHHHHHHHHHhc---CCc
Q 020428          166 IEKTGVSALAVH-GRKV-----ADRPRDPAKWGEIADIVAA---LS--IPVIANGDVFEYDDFQRIKTAA---GAS  227 (326)
Q Consensus       166 l~~~G~d~i~vh-~r~~-----~~~~~~~~~~~~i~~i~~~---~~--iPVi~nGgI~s~~d~~~~l~~~---Gad  227 (326)
                      ..++|+|+|-.+ |.+.     .....+.+..+.++.+++.   ++  +||-++|||+|.+++.+++ +.   |++
T Consensus       137 a~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i-~a~~~Ga~  211 (226)
T 1vcv_A          137 IAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIV-DAIGWGED  211 (226)
T ss_dssp             HHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHH-HHHCSCSC
T ss_pred             HHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HHHHCCCC
Confidence            999999999543 2220     0011245556655555554   54  9999999999999999999 46   776

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=98.25  E-value=4.3e-06  Score=79.58  Aligned_cols=128  Identities=7%  Similarity=-0.067  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHH
Q 020428           88 VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        88 ~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      +.+.+.|+.+.+ ||+.+.++.|-.....      .. .++++...++++++|+++  ++++.+...-+|+.++++++++
T Consensus       150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~------~~-~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~  222 (392)
T 3p3b_A          150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHM------PL-WEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLA  222 (392)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEECCHHHHTS------CH-HHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEECcCcCcccC------Cc-cccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHH
Confidence            888888776655 9999999876211100      00 125677788999999877  5788888877899999999999


Q ss_pred             HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          165 RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+++.|+++|-       +.. . .+++..+++++.     +++||++.+ +.++++++++++...+|.|++=
T Consensus       223 ~l~~~~i~~iE-------~P~-~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik  285 (392)
T 3p3b_A          223 ALSDVNLYWLE-------EAF-H-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYD  285 (392)
T ss_dssp             HTTTSCEEEEE-------CSS-S-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred             HHHhcCCCEEe-------cCC-c-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence            99999988763       222 2 578999999998     899999999 9999999999975568988773

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=98.23  E-value=9.8e-06  Score=71.41  Aligned_cols=144  Identities=12%  Similarity=0.137  Sum_probs=99.1

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCC--EEEEccCCCccccccccccccccCChHHHHHHHHHHhhc--ccCcEEEEec
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVA--AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN--LDVPVTCKIR  151 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d--~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~--~~~pv~vK~r  151 (326)
                      .+..+|...|...+.+..+.+.+ |+|  .+|+=-|.=+|+.+   +|          .++++++|+.  .+.|+.+++-
T Consensus         6 ~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~---~G----------~~~v~~ir~~~~~~~~~dvhLm   72 (228)
T 3ovp_A            6 KIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNIT---FG----------HPVVESLRKQLGQDPFFDMHMM   72 (228)
T ss_dssp             EEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBC---BC----------HHHHHHHHHHHCSSSCEEEEEE
T ss_pred             EeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccc---cC----------HHHHHHHHHhhCCCCcEEEEEE
Confidence            46677888888888888888876 777  56664443233221   23          2457777777  4788888876


Q ss_pred             CCCChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCC
Q 020428          152 LLKSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPR  186 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~  186 (326)
                      . .++   ..+++.+.++|+|.|++|.-...                                             .+..
T Consensus        73 v-~~p---~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~  148 (228)
T 3ovp_A           73 V-SKP---EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFG  148 (228)
T ss_dssp             C-SCG---GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTC
T ss_pred             e-CCH---HHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCC
Confidence            4 233   34566778899999999854211                                             0111


Q ss_pred             C----cCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          187 D----PAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       187 ~----~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      |    +..++-++++++.. ++||.+.|||+ ++.+..+. ..|||.+++||++...+
T Consensus       149 Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~-~aGAd~~VvGsaIf~a~  204 (228)
T 3ovp_A          149 GQKFMEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCA-EAGANMIVSGSAIMRSE  204 (228)
T ss_dssp             SCCCCGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHH-HHTCCEEEESHHHHTCS
T ss_pred             CcccCHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHH-HcCCCEEEEeHHHhCCC
Confidence            1    23456677777765 68999999995 89999999 69999999999977543

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=98.22  E-value=2.2e-06  Score=74.27  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=60.0

Q ss_pred             HHHHHHcCCcEEEEeecccCC--CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          163 ARRIEKTGVSALAVHGRKVAD--RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +..+.+.|+|+|.+++.....  ....+.+|+.++++++.+++||++.|||+ ++++.+++ ..|+++|++|++++..|
T Consensus       121 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~-~~Ga~gv~vgs~i~~~~  197 (215)
T 1xi3_A          121 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVL-KTGVDGIAVISAVMGAE  197 (215)
T ss_dssp             HHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHH-TTTCSEEEESHHHHTSS
T ss_pred             HHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHH-HcCCCEEEEhHHHhCCC
Confidence            445677899999987632111  11245689999999988899999999999 99999998 58999999999998765

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=98.22  E-value=2.6e-06  Score=74.49  Aligned_cols=73  Identities=16%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             HHHHHHcCCcEEEEe----ecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          163 ARRIEKTGVSALAVH----GRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       163 a~~l~~~G~d~i~vh----~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +..+.+.|+|+|.+.    ..+. +.+..+.+|+.++++++.++ +||++.|||. ++++.+++ ..|+++|.+|++++.
T Consensus       129 ~~~a~~~g~d~v~~~~v~~t~~~-~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~-~~Ga~gv~vgs~i~~  205 (227)
T 2tps_A          129 VKQAEEDGADYVGLGPIYPTETK-KDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVI-QAGADGVSMISAISQ  205 (227)
T ss_dssp             HHHHHHHTCSEEEECCSSCCCSS-SSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHH-HTTCSEEEESHHHHT
T ss_pred             HHHHHhCCCCEEEECCCcCCCCC-CCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHH-HcCCCEEEEhHHhhc
Confidence            556678899999972    2222 22234567999999998888 9999999999 99999998 589999999999876


Q ss_pred             C
Q 020428          238 N  238 (326)
Q Consensus       238 ~  238 (326)
                      .
T Consensus       206 ~  206 (227)
T 2tps_A          206 A  206 (227)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A

Probab=98.20  E-value=1.8e-05  Score=75.90  Aligned_cols=149  Identities=7%  Similarity=0.026  Sum_probs=112.0

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccc-----ccccccccc---CChHHHHHHHHHHhhcc--cC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV-----SGGMGAALL---SKPELIHDILTMLKRNL--DV  144 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~-----~~~~G~~l~---~~p~~~~~iv~~v~~~~--~~  144 (326)
                      .|+...+.+.+++++.+.++...+ ||..+-+..|.+..+..     .........   .+++...+.++++|+++  ++
T Consensus       143 v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~  222 (421)
T 4hnl_A          143 IPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQF  222 (421)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             cceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCc
Confidence            355566667788888877776654 99999999887543221     111111122   23456677888888887  56


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      .+.+....+|+..+++++++.+++.++.+|-        .+..+.|++..+++++.+++||.+.-.+.|..++.++++..
T Consensus       223 ~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE--------eP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~  294 (421)
T 4hnl_A          223 QMLHDVHERLHPNQAIQFAKAAEPYQLFFLE--------DILPPDQSHWLTQLRSQSATPIATGELFNNPMEWQELVKNR  294 (421)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHGGGCCSEEE--------CCSCGGGGGGHHHHHTTCCCCEEECTTCCSGGGTHHHHHTT
T ss_pred             eEeccccccCCHHHHHHHHHHhhhhhhcccc--------cCCcccchHHHHHHHhcCCCCeecCcceehhHHHHHHHhcC
Confidence            7777777789999999999999999998872        22345588899999999999999999999999999999766


Q ss_pred             CCcEEEec
Q 020428          225 GASSVMAA  232 (326)
Q Consensus       225 Gad~VmiG  232 (326)
                      .+|.|++-
T Consensus       295 a~d~v~~d  302 (421)
T 4hnl_A          295 QIDFMRAH  302 (421)
T ss_dssp             CCSEECCC
T ss_pred             CceEEEeC
Confidence            68988764

>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}

Probab=98.19  E-value=3.5e-05  Score=74.44  Aligned_cols=127  Identities=11%  Similarity=0.070  Sum_probs=104.5

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      +.+++++.+.++...+ ||..+-+..|+                +++.-.+.++++|+++  ++++.+....+|+..+++
T Consensus       199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~  262 (441)
T 4a35_A          199 GYSDDTLKQLCAQALKDGWTRFKVKVGA----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAV  262 (441)
T ss_dssp             TCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence            5588998887776654 99999998774                3566677788899887  678888888899999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA---LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~---~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ++++.+++.++.+|       ++ +..+.|++..+++++.   +++||.+.-.+.|..++.++++...+|.|++--+
T Consensus       263 ~~~~~L~~~~~~~i-------Ee-P~~~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~d~~  331 (441)
T 4a35_A          263 EWMSKLAKFKPLWI-------EE-PTSPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQIDSC  331 (441)
T ss_dssp             HHHHHHGGGCCSEE-------EC-CSCTTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTTCCSEECCCTT
T ss_pred             HHHHhhcccCccEE-------eC-CCCcccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcCCCCEEEECcc
Confidence            99999999999887       22 2345688889999987   7899999999999999999997667898887533

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=98.15  E-value=5.2e-06  Score=74.46  Aligned_cols=155  Identities=17%  Similarity=0.143  Sum_probs=93.5

Q ss_pred             CCcEEEEECCCCHH-HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEe
Q 020428           75 RNHVVFQMGTSDAV-RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKI  150 (326)
Q Consensus        75 ~~p~~vQl~g~~~~-~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~  150 (326)
                      +.|+..|+.+.||- .+....+.+++ ||.++ +|.  |..-...+.+-..|..++--..+.++.++.+-  ++ +++=+
T Consensus        94 ~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~--ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL-~Ti~~  169 (286)
T 2p10_A           94 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNF--PTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDL-LTTPY  169 (286)
T ss_dssp             SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EEC--SCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-EECCE
T ss_pred             CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EEC--CCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCC-eEEEe
Confidence            46999999988874 33333355655 99999 997  54444445555555555444444555554432  22 12211


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeec-ccCCCC--CCc---CC-HHHHHHHHHhc-----CCcEE-EeCCCCCHHHH
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGR-KVADRP--RDP---AK-WGEIADIVAAL-----SIPVI-ANGDVFEYDDF  217 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r-~~~~~~--~~~---~~-~~~i~~i~~~~-----~iPVi-~nGgI~s~~d~  217 (326)
                      -      ...+.++.+.++|+|.|.+|.- |..+.-  ..+   .+ -+.+.++.+.+     ++.|+ +.|+|.+++|+
T Consensus       170 v------~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv  243 (286)
T 2p10_A          170 V------FSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDA  243 (286)
T ss_dssp             E------CSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHH
T ss_pred             c------CCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHH
Confidence            1      2345567778999999999965 322211  111   12 33444444432     55555 55599999999


Q ss_pred             HHHHHhc-CCcEEEeccchhcCc
Q 020428          218 QRIKTAA-GASSVMAARGALWNA  239 (326)
Q Consensus       218 ~~~l~~~-Gad~VmiGr~~l~~P  239 (326)
                      +.+++.+ |++|+..++++..=|
T Consensus       244 ~~~l~~t~G~~G~~gASsier~p  266 (286)
T 2p10_A          244 RFILDSCQGCHGFYGASSMERLP  266 (286)
T ss_dssp             HHHHHHCTTCCEEEESHHHHHHH
T ss_pred             HHHHhcCCCccEEEeehhhhcCC
Confidence            9999543 799999999866544

>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}

Probab=98.13  E-value=7.7e-05  Score=70.21  Aligned_cols=133  Identities=15%  Similarity=0.195  Sum_probs=104.0

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~  154 (326)
                      |+...+...+++++.+.++... .||..+-+..|..               +++.-.+.++++|+.+ +.++.+...-+|
T Consensus       134 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~~~  198 (365)
T 3ik4_A          134 ETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGV---------------DVAYDLARLRAIHQAAPTAPLIVDGNCGY  198 (365)
T ss_dssp             EBCEEECCSCHHHHHHHHHHHHHTTCCCEEEECCSS---------------CHHHHHHHHHHHHHHSSSCCEEEECTTCC
T ss_pred             eeeEEecCCCHHHHHHHHHHHHHcCCCEEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence            3445566778998887776654 4999999877632               3566677888888876 556777777789


Q ss_pred             ChHHHHHHHHHH--HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRI--EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l--~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +..++.++++.+  ++.++.+|-       | +..+.|++..+++++.+++||.+.-.+.+..++.++++...+|.|++-
T Consensus       199 ~~~~A~~~~~~L~~~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik  270 (365)
T 3ik4_A          199 DVERALAFCAACKAESIPMVLFE-------Q-PLPREDWAGMAQVTAQSGFAVAADESARSAHDVLRIAREGTASVINIK  270 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEE-------C-CSCTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred             CHHHHHHHHHHHhhCCCCceEEE-------C-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEc
Confidence            999999999999  667776663       2 234558999999999999999999999999999999976778988775

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=98.13  E-value=4.2e-06  Score=74.46  Aligned_cols=76  Identities=12%  Similarity=0.071  Sum_probs=58.8

Q ss_pred             HHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          161 ELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.+..+.+.|+|+|.+...-..   ... .+..++.++++++.  .++||++-||| +++++.+++ ..||++|.+|+++
T Consensus       146 ~Ea~~A~~~GaDyI~vgpvf~T~tK~~~-~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~-~aGa~gvav~sai  222 (243)
T 3o63_A          146 DQVAAAAAGDADYFCVGPCWPTPTKPGR-AAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVL-DAGARRIVVVRAI  222 (243)
T ss_dssp             HHHHHHHHSSCSEEEECCSSCCCC------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHH-HTTCCCEEESHHH
T ss_pred             HHHHHHhhCCCCEEEEcCccCCCCCCCc-chhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHH-HcCCCEEEEeHHH
Confidence            3366677799999999654221   111 35679999999886  58999999999 899999999 6999999999998


Q ss_pred             hcCc
Q 020428          236 LWNA  239 (326)
Q Consensus       236 l~~P  239 (326)
                      +..+
T Consensus       223 ~~a~  226 (243)
T 3o63_A          223 TSAD  226 (243)
T ss_dssp             HTCS
T ss_pred             hCCC
Confidence            8654

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=98.12  E-value=3.3e-05  Score=68.83  Aligned_cols=136  Identities=11%  Similarity=0.117  Sum_probs=102.3

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      +.|+.-+=|..++-+..+   ....|+|+|=|++.+               .+++.+.++++..++ .+..+.|-+.   
T Consensus       101 ~lPvLrKDfi~~~~qi~e---a~~~GAD~ilLi~a~---------------l~~~~l~~l~~~a~~-lGl~~lvEv~---  158 (251)
T 1i4n_A          101 CRPILAKDFYIDTVQVKL---ASSVGADAILIIARI---------------LTAEQIKEIYEAAEE-LGMDSLVEVH---  158 (251)
T ss_dssp             CSCEEEECCCCSTHHHHH---HHHTTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCEEEEEEC---
T ss_pred             CCCEEEeeCCCCHHHHHH---HHHcCCCEEEEeccc---------------CCHHHHHHHHHHHHH-cCCeEEEEeC---
Confidence            458887777777665444   222499999998642               234678888888876 4888877773   


Q ss_pred             ChHHHHHHHHHHHHc-CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          155 SSQDTVELARRIEKT-GVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                          ..+.++.+.+. |++.|-++.|.-..   -..|++...++.+.+  ++++|+-|||.|++|+.++. .. +|+|.|
T Consensus       159 ----~~eE~~~A~~l~g~~iIGinnr~l~t---~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~-~~-a~avLV  229 (251)
T 1i4n_A          159 ----SREDLEKVFSVIRPKIIGINTRDLDT---FEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLR-GK-VNAVLV  229 (251)
T ss_dssp             ----SHHHHHHHHTTCCCSEEEEECBCTTT---CCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHT-TT-CSEEEE
T ss_pred             ----CHHHHHHHHhcCCCCEEEEeCccccc---CCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHH-Hh-CCEEEE
Confidence                23446777788 99999999986432   345788888888776  67999999999999999999 57 999999


Q ss_pred             ccchhcCccc
Q 020428          232 ARGALWNASI  241 (326)
Q Consensus       232 Gr~~l~~P~l  241 (326)
                      |++++..++.
T Consensus       230 G~aimr~~d~  239 (251)
T 1i4n_A          230 GTSIMKAENP  239 (251)
T ss_dssp             CHHHHHCSSH
T ss_pred             cHHHcCCcCH
Confidence            9999976553

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=98.12  E-value=4e-06  Score=74.02  Aligned_cols=74  Identities=11%  Similarity=0.039  Sum_probs=59.9

Q ss_pred             HHHHHHHHcCC-----cEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          161 ELARRIEKTGV-----SALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       161 e~a~~l~~~G~-----d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +.++.+.+.|.     ..|-+.+ +.     .+.+.+.++++++.+ ++||++.|||+|++++++++ . |||+|++|++
T Consensus       149 e~~~~~a~~g~~~l~~~~Vyl~~-~G-----~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~-~-gAd~VIVGSa  220 (234)
T 2f6u_A          149 ELAASYALVGEKLFNLPIIYIEY-SG-----TYGNPELVAEVKKVLDKARLFYGGGIDSREKAREML-R-YADTIIVGNV  220 (234)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEEC-TT-----SCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHH-H-HSSEEEECHH
T ss_pred             HHHHHHHHhhhhhcCCCEEEEeC-CC-----CcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHH-h-CCCEEEEChH
Confidence            55666666555     6666655 32     245799999999999 99999999999999999998 5 9999999999


Q ss_pred             hhcCcccc
Q 020428          235 ALWNASIF  242 (326)
Q Consensus       235 ~l~~P~lf  242 (326)
                      +..+|.-+
T Consensus       221 ~v~~~~~~  228 (234)
T 2f6u_A          221 IYEKGIDA  228 (234)
T ss_dssp             HHHHCHHH
T ss_pred             HHhCHHHH
Confidence            99988543

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=98.12  E-value=5.7e-06  Score=73.77  Aligned_cols=153  Identities=11%  Similarity=0.139  Sum_probs=93.4

Q ss_pred             cEEEEEC-C-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhcccCc
Q 020428           77 HVVFQMG-T-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRNLDVP  145 (326)
Q Consensus        77 p~~vQl~-g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~~~~p  145 (326)
                      -++.=|. | .+++...+.++.+.+ |+|.|||.+  |.+.-..+|      .--+|-  -+.+.+.++++++|+.  +|
T Consensus        15 ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~P   90 (252)
T 3tha_A           15 ANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGV--AYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KA   90 (252)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEEC--CCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--SE
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--CC
Confidence            3554442 3 467889999998877 899999976  332111111      000111  2456777888888765  67


Q ss_pred             EEEEecCCCChH---HHHHHHHHHHHcCCcEEEEe-------------------------ec-ccC----------CC--
Q 020428          146 VTCKIRLLKSSQ---DTVELARRIEKTGVSALAVH-------------------------GR-KVA----------DR--  184 (326)
Q Consensus       146 v~vK~r~g~~~~---~~~e~a~~l~~~G~d~i~vh-------------------------~r-~~~----------~~--  184 (326)
                      +.+=.  .+++-   -...+++.+.++|+|++++-                         .- +..          ..  
T Consensus        91 ivlm~--Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFi  168 (252)
T 3tha_A           91 LVFMV--YYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFI  168 (252)
T ss_dssp             EEEEC--CHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCE
T ss_pred             EEEEe--ccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeE
Confidence            65411  12211   13455666666666666541                         11 100          00  


Q ss_pred             -------CCCcC------CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          185 -------PRDPA------KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       185 -------~~~~~------~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                             .+|..      ..+.++++++..++||+..+||.|++++.++. . +||||.||++++.
T Consensus       169 Y~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~-~-~ADGVIVGSAiVk  232 (252)
T 3tha_A          169 YLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMR-K-VADGVIVGTSIVK  232 (252)
T ss_dssp             EEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHT-T-TSSEEEECHHHHH
T ss_pred             EEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHH-h-cCCEEEECHHHHH
Confidence                   11211      13567888888899999999999999999887 3 6999999999874

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=98.11  E-value=1.6e-05  Score=70.76  Aligned_cols=144  Identities=15%  Similarity=0.127  Sum_probs=100.1

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCC--EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVA--AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d--~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~  152 (326)
                      .+..+|...|...+.+..+.+.+ |+|  .+|+=-|.=+|+.   .+|          .++++++|+.+ +.|+.+.+-.
T Consensus        29 ~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpni---t~G----------~~~v~~lr~~~p~~~ldvHLmv   95 (246)
T 3inp_A           29 QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNL---TFG----------PMVLKALRDYGITAGMDVHLMV   95 (246)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB---CCC----------HHHHHHHHHHTCCSCEEEEEEC
T ss_pred             eeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcch---hcC----------HHHHHHHHHhCCCCeEEEEEee
Confidence            57788888898888888888876 777  5566444322221   122          25688888887 8999998864


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD  187 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~  187 (326)
                      .    ++..+++.+.++|+|.|++|.-...                                             .+..|
T Consensus        96 ~----~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgG  171 (246)
T 3inp_A           96 K----PVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGG  171 (246)
T ss_dssp             S----SCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--
T ss_pred             C----CHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCC
Confidence            2    2234677788999999999853210                                             01111


Q ss_pred             ----cCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          188 ----PAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       188 ----~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                          +..++-++++++.     .+++|.+-|||+ ++.+..+. +.|||.+++||++...+
T Consensus       172 Q~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~-~aGAD~~V~GSaIf~a~  230 (246)
T 3inp_A          172 QKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIA-VCGVNAFVAGSAIFNSD  230 (246)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHH-TTTCCEEEESHHHHTSS
T ss_pred             cccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHH-HcCCCEEEEehHHhCCC
Confidence                3345667776654     358999999998 68898888 69999999999976543

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=98.10  E-value=1.9e-06  Score=77.47  Aligned_cols=78  Identities=9%  Similarity=-0.029  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|++.+++-.-+.       .+.+.++++++.+++||...|||++. ++++++  .||+-|.+|++++
T Consensus        38 ~dp~~~A~~~~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~~~pv~vgGGir~~-~~~~~l--~Ga~~Viigs~a~  107 (260)
T 2agk_A           38 HPSSYYAKLYKDRDVQGCHVIKLGP-------NNDDAAREALQESPQFLQVGGGINDT-NCLEWL--KWASKVIVTSWLF  107 (260)
T ss_dssp             CCHHHHHHHHHHTTCTTCEEEEESS-------SCHHHHHHHHHHSTTTSEEESSCCTT-THHHHT--TTCSCEEECGGGB
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCC-------CCHHHHHHHHhcCCceEEEeCCCCHH-HHHHHh--cCCCEEEECcHHH
Confidence            3678999999999999999866653       57899999999999999999999987 999999  8999999999999


Q ss_pred             cC-----cccccc
Q 020428          237 WN-----ASIFSS  244 (326)
Q Consensus       237 ~~-----P~lf~~  244 (326)
                      .|     |.++.+
T Consensus       108 ~~~g~~~p~~~~~  120 (260)
T 2agk_A          108 TKEGHFQLKRLER  120 (260)
T ss_dssp             CTTCCBCHHHHHH
T ss_pred             hhcCCCCHHHHHH
Confidence            99     766554

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=98.09  E-value=4e-05  Score=73.31  Aligned_cols=125  Identities=14%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             HhhcCCCEEEEccCCCccccccccccccc-cCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428           96 MVCKDVAAIDINMGCPKSFSVSGGMGAAL-LSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVS  172 (326)
Q Consensus        96 ~~~~~~d~idlN~gcP~~~~~~~~~G~~l-~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d  172 (326)
                      .+++||..+-++...+..    ...|... -.+++...+.++++|+++  ++++.+...-+|+.++++++++.+++.|++
T Consensus       167 ~~~~G~~~~K~~~~~~~~----~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~  242 (410)
T 3dip_A          167 LVAEGYAAMKIWPFDDFA----SITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVL  242 (410)
T ss_dssp             HHHTTCSEEEECTTHHHH----TTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCS
T ss_pred             HHHcCCCEEEECCccCcc----ccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence            344599999986211110    0112111 123556778899999987  578888888889999999999999999999


Q ss_pred             EEEEeecccCCCC-CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          173 ALAVHGRKVADRP-RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       173 ~i~vh~r~~~~~~-~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|.       + + ..+.+++..+++++.+++||++.+.+.+++++.++++...+|.|++-
T Consensus       243 ~iE-------q-P~~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  295 (410)
T 3dip_A          243 WVE-------D-PIAKMDNIPAVADLRRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLD  295 (410)
T ss_dssp             EEE-------C-CBSCTTCHHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             EEE-------C-CCCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCeEeec
Confidence            985       1 2 23448999999999999999999999999999999976668998875

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=98.02  E-value=2.1e-05  Score=69.23  Aligned_cols=69  Identities=6%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428          169 TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       169 ~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~  245 (326)
                      .|...|-+-. +..     +.+.+.++++++.+ ++||+..|||+|+++++++. . |||+|++|+++..||..+.+.
T Consensus       158 ~g~~~vY~e~-sG~-----~g~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~-~-gAD~VVVGSai~~~~~~~~e~  227 (235)
T 3w01_A          158 YRLPVMYIEY-SGI-----YGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMA-A-IADTIIVGDIIYKDIKKALKT  227 (235)
T ss_dssp             TCCSEEEEEC-TTS-----CCCHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHH-T-TSSEEEECTHHHHCHHHHHHT
T ss_pred             cCCCEEEEec-CCC-----cCCHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHH-c-CCCEEEECCceecCHHHHHHH
Confidence            5777877755 321     23789999999998 99999999999999999988 4 999999999999999887764

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=98.00  E-value=4.8e-05  Score=69.38  Aligned_cols=199  Identities=14%  Similarity=0.109  Sum_probs=121.5

Q ss_pred             CCCCHHHHHHHHHcCCCeEEeCcee-c-ccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-CC-CCHHH
Q 020428           14 RVGTLPFRLLAAQYGADITYGEEII-D-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-GT-SDAVR   89 (326)
Q Consensus        14 g~t~~~fr~~~~~~G~~l~~te~i~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-~g-~~~~~   89 (326)
                      +.-|..+.+++.+.|.+.+++.-.+ + ..+.+      .+.+...+.+.  ....-......+.|+++-+ +| .+++.
T Consensus        28 ~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~------pD~~~vt~~em--~~~~~~I~r~~~~PviaD~d~Gyg~~~~   99 (298)
T 3eoo_A           28 GAITAYAAKMAEAVGFKAVYLSGGGVAANSLGI------PDLGISTMDDV--LVDANRITNATNLPLLVDIDTGWGGAFN   99 (298)
T ss_dssp             ECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCC------CSSSCCCHHHH--HHHHHHHHHHCCSCEEEECTTCSSSHHH
T ss_pred             cCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCC------CCCCCCCHHHH--HHHHHHHHhhcCCeEEEECCCCCCCHHH
Confidence            6668999999999999877765311 1 11111      11111100000  0000111122346888887 33 38888


Q ss_pred             HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCC----CChHHHHHHH
Q 020428           90 ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLL----KSSQDTVELA  163 (326)
Q Consensus        90 ~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g----~~~~~~~e~a  163 (326)
                      ..+.++.+.+ |+.+|.|--+.. ++.+..-.|..|....+.+.. +++.+++ .+.++.+--|..    ...+++++-+
T Consensus       100 v~~~v~~l~~aGaagv~iEDq~~-~k~cGh~~gk~l~~~~e~~~r-i~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra  177 (298)
T 3eoo_A          100 IARTIRSFIKAGVGAVHLEDQVG-QKRCGHRPGKECVPAGEMVDR-IKAAVDARTDETFVIMARTDAAAAEGIDAAIERA  177 (298)
T ss_dssp             HHHHHHHHHHTTCSEEEEECBCC-CCCTTCCCCCCBCCHHHHHHH-HHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCeEEEECCCCC-CcccCCCCCCeecCHHHHHHH-HHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHH
Confidence            8888888776 999999976542 222222223344443344444 4444443 356666666653    1246788999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe---CC---CCCHHHHHHHHHhcCCcEEEeccch
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN---GD---VFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n---Gg---I~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.+.++|+|.|-+++.         .+.+.++++.+.+++||.+|   ||   ..|.+   ++- +.|+..|..|-.+
T Consensus       178 ~ay~~AGAD~if~~~~---------~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~---eL~-~lGv~~v~~~~~~  242 (298)
T 3eoo_A          178 IAYVEAGADMIFPEAM---------KTLDDYRRFKEAVKVPILANLTEFGSTPLFTLD---ELK-GANVDIALYCCGA  242 (298)
T ss_dssp             HHHHHTTCSEEEECCC---------CSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHH---HHH-HTTCCEEEECSHH
T ss_pred             HhhHhcCCCEEEeCCC---------CCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHH---HHH-HcCCeEEEEchHH
Confidence            9999999999999875         25788999999999999876   33   23433   444 6899999988553

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=98.00  E-value=0.00012  Score=66.73  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             HHHHHHHhhcccCcEEEEecCC----CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          132 HDILTMLKRNLDVPVTCKIRLL----KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       132 ~~iv~~v~~~~~~pv~vK~r~g----~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      .+++++..+ .++|+.+=...|    .+++.....++...+.|+|+|-+.       |.+    +.++++.+.+++||++
T Consensus       161 ~~v~~~a~~-~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~-------~t~----e~~~~vv~~~~vPVv~  228 (295)
T 3glc_A          161 IQLVDAGMK-VGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY-------YVE----KGFERIVAGCPVPIVI  228 (295)
T ss_dssp             HHHHHHHHT-TTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE-------CCT----TTHHHHHHTCSSCEEE
T ss_pred             HHHHHHHHH-cCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC-------CCH----HHHHHHHHhCCCcEEE
Confidence            344444433 278887743222    233334558889999999998776       111    2357788888999999


Q ss_pred             eCCCCC-HHH----HHHHHHhcCCcEEEeccchhcCc
Q 020428          208 NGDVFE-YDD----FQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       208 nGgI~s-~~d----~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      .||+.+ .++    +..++ ..||+|+.+||.++..|
T Consensus       229 ~GG~~~~~~~~l~~v~~ai-~aGA~Gv~vGRnI~q~~  264 (295)
T 3glc_A          229 AGGKKLPEREALEMCWQAI-DQGASGVDMGRNIFQSD  264 (295)
T ss_dssp             ECCSCCCHHHHHHHHHHHH-HTTCSEEEESHHHHTSS
T ss_pred             EECCCCCHHHHHHHHHHHH-HhCCeEEEeHHHHhcCc
Confidence            999984 444    44555 47999999999988654

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=98.00  E-value=0.00025  Score=64.44  Aligned_cols=201  Identities=14%  Similarity=0.085  Sum_probs=122.2

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCc--eecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-CC-CCHH
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEE--IIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-GT-SDAV   88 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-~g-~~~~   88 (326)
                      .+.-|....+++.+.|.+.+++.-  ++.. +.+      .+.+...+.+.  ....-......+.|+++-+ +| .+++
T Consensus        20 ~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~-~G~------pD~~~vt~~em--~~~~~~I~~~~~~PviaD~d~Gyg~~~   90 (290)
T 2hjp_A           20 MAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAV------PDANILSMSTH--LEMMRAIASTVSIPLIADIDTGFGNAV   90 (290)
T ss_dssp             EECSSHHHHHHHHHHTCSEEEECHHHHHHH-TTS------CTTTCSCHHHH--HHHHHHHHTTCSSCEEEECTTTTSSHH
T ss_pred             ecCCCHHHHHHHHHcCCCEEEEChHHHHHh-CCC------CCCCCCCHHHH--HHHHHHHHhcCCCCEEEECCCCCCCHH
Confidence            467799999999999999888662  2211 222      11111110000  0000111223346888887 33 2888


Q ss_pred             HHHHHHHHhhc-CCCEEEEccCCCcccccccccc--ccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-----CChHHH
Q 020428           89 RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMG--AALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-----KSSQDT  159 (326)
Q Consensus        89 ~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G--~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-----~~~~~~  159 (326)
                      ...+.++.+.+ |+.+|.|--+.. ++++.. .|  +.-+...+...+-|++++++- ..++.+--|..     ...+++
T Consensus        91 ~~~~~v~~l~~aGa~gv~iED~~~-~k~cgH-~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~a  168 (290)
T 2hjp_A           91 NVHYVVPQYEAAGASAIVMEDKTF-PKDTSL-RTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEA  168 (290)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECBCS-SCCC--------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHH
T ss_pred             HHHHHHHHHHHhCCeEEEEcCCCC-Cccccc-cccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHH
Confidence            88888888776 999999986642 222222 22  233344544455556555542 33444444442     225789


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEEEe---CCCCCHHHHHHHHHhcC-CcEEEecc
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVIAN---GDVFEYDDFQRIKTAAG-ASSVMAAR  233 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi~n---GgI~s~~d~~~~l~~~G-ad~VmiGr  233 (326)
                      ++-++.++++|+|.|.++++.        .+.+.++++.+.++  +|+++|   +...|.+   ++- +.| +..|..|-
T Consensus       169 i~Ra~ay~eAGAd~i~~e~~~--------~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~---eL~-~lG~v~~v~~~~  236 (290)
T 2hjp_A          169 VRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEA---DIA-ALSKVGIVIYGN  236 (290)
T ss_dssp             HHHHHHHHHTTCSEEEECCCC--------SSSHHHHHHHHHCCCSSCEEECGGGCTTSCHH---HHH-TCTTEEEEEECS
T ss_pred             HHHHHHHHHcCCcEEEeCCCC--------CCHHHHHHHHHHcCCCCCEEEeccCCCCCCHH---HHH-hcCCeeEEEech
Confidence            999999999999999998742        24577899999998  999987   3334443   444 689 99999886


Q ss_pred             chh
Q 020428          234 GAL  236 (326)
Q Consensus       234 ~~l  236 (326)
                      .++
T Consensus       237 ~~~  239 (290)
T 2hjp_A          237 HAI  239 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=97.99  E-value=4.7e-05  Score=68.13  Aligned_cols=123  Identities=11%  Similarity=0.070  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecC--C-CChHH-HHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRL--L-KSSQD-TVELA  163 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~--g-~~~~~-~~e~a  163 (326)
                      ...++...+..|+|.||+-+          .+|..+-.+.+.+.+-+.++++.++ .+..+|.=+  + .+.++ ....+
T Consensus        87 Kv~E~~~Av~~GAdEIDmVi----------nig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~  156 (260)
T 1p1x_A           87 ALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKAS  156 (260)
T ss_dssp             HHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEec----------cHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHH
Confidence            44555555656999999864          3555556677888888888888773 233445433  2 22334 56888


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-------cCCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-------LSIPVIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-------~~iPVi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                      +...++|+|+|-.+    .+...+.+..+.++.+++.       .++||-++|||+|.+|+.++++ .|+
T Consensus       157 ~ia~eaGADfVKTS----TGf~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~-aga  221 (260)
T 1p1x_A          157 EISIKAGADFIKTS----TGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLA-IAD  221 (260)
T ss_dssp             HHHHHTTCSEEECC----CSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHH-HHH
T ss_pred             HHHHHhCCCEEEeC----CCCCCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH-hhh
Confidence            99999999999443    2233355677755555544       3699999999999999999994 443

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=97.98  E-value=6.5e-05  Score=67.82  Aligned_cols=123  Identities=11%  Similarity=0.074  Sum_probs=81.5

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChH---HHHHHHHHHhhcccCcEEEEecC--C--CChHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPE---LIHDILTMLKRNLDVPVTCKIRL--L--KSSQDTVE  161 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~---~~~~iv~~v~~~~~~pv~vK~r~--g--~~~~~~~e  161 (326)
                      ...++...++.|+|.||+-+          .+|..+-.+.+   .+.+-+.++++.++ +..+|.=+  +  .+.+....
T Consensus       108 Kv~E~~~Av~~GAdEIDmVi----------nig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~  176 (281)
T 2a4a_A          108 VLNDTEKALDDGADEIDLVI----------NYKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIK  176 (281)
T ss_dssp             HHHHHHHHHHHTCSEEEEEC----------CHHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEec----------chHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHH
Confidence            44555555656999999864          35555555667   88888899988874 23445443  2  23333568


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh------------cCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA------------LSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~------------~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      .++...++|+|+|-..    .+...+.+..+.++.+++.            .+++|-++|||+|.+|+.++++ .|++
T Consensus       177 A~~ia~eaGADfVKTS----TGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~-aga~  249 (281)
T 2a4a_A          177 TTLAVLNGNADFIKTS----TGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYIL-LARR  249 (281)
T ss_dssp             HHHHHHTTTCSEEECC----CSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHH-HHHH
T ss_pred             HHHHHHHhCCCEEEeC----CCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHH-Hhhh
Confidence            8899999999999543    2222244445544433332            3699999999999999999994 5443

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=97.98  E-value=6.8e-05  Score=71.48  Aligned_cols=128  Identities=9%  Similarity=0.070  Sum_probs=95.9

Q ss_pred             HHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCc
Q 020428           95 KMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVS  172 (326)
Q Consensus        95 ~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d  172 (326)
                      +.+.+||..+-+..|-|...  ....|..-..+++...+.++++|+++  ++++.+...-+|+.++++++++.+++.|++
T Consensus       162 ~~~~~G~~~~Kik~g~~~~~--~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~  239 (400)
T 4dxk_A          162 SLLEDGITAMKIWPFDAAAE--KTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTF  239 (400)
T ss_dssp             HHHHTTCCEEEECTTHHHHH--HHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCS
T ss_pred             HHHHhCCCEEEEcCCCcccc--ccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence            34445999999876522110  00011001123566788899999987  578888888889999999999999999999


Q ss_pred             EEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          173 ALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       173 ~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|.       + +..+.+++..+++++.+++||++.+.+.+++++.++++...+|.|++-
T Consensus       240 ~iE-------e-P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d  291 (400)
T 4dxk_A          240 WHE-------D-PIKMDSLSSLTRYAAVSPAPISASETLGSRWAFRDLLETGAAGVVMLD  291 (400)
T ss_dssp             EEE-------C-CBCTTSGGGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTTCCCEEEEC
T ss_pred             EEE-------c-CCCcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            986       1 223457888999999999999999999999999999965558988875

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.95  E-value=1.2e-05  Score=79.85  Aligned_cols=82  Identities=15%  Similarity=0.215  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHHHHhcCCcEEEeCCCCCH-----------HHHHHHHHh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADIVAALSIPVIANGDVFEY-----------DDFQRIKTA  223 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~-----------~d~~~~l~~  223 (326)
                      .++.++|+.+++.|+++|++...+....  ...+.+.+.++++++.+++||++.|||++.           +++.+++ .
T Consensus       280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l-~  358 (555)
T 1jvn_A          280 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF-R  358 (555)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH-H
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHH-H
Confidence            4789999999999999999887665321  112335888999999999999999999998           5599999 6


Q ss_pred             cCCcEEEeccchhcCc
Q 020428          224 AGASSVMAARGALWNA  239 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P  239 (326)
                      .|||.|.||++++.||
T Consensus       359 aGad~V~igt~~~~~~  374 (555)
T 1jvn_A          359 SGADKVSIGTDAVYAA  374 (555)
T ss_dssp             HTCSEEEECHHHHHHH
T ss_pred             cCCCEEEECCHHhhCc
Confidence            8999999999998753

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=97.95  E-value=2.2e-05  Score=69.32  Aligned_cols=143  Identities=14%  Similarity=0.207  Sum_probs=96.1

Q ss_pred             EEEEECCCCHHHHHHHHHHhhcCCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           78 VVFQMGTSDAVRALTAAKMVCKDVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      +..+|...|...+.+..+.+..|+|.  +|+=-|.=.++.   .+|          ..+++++++.++.|+.+-+-.. +
T Consensus         3 i~pSila~D~~~l~~~i~~~~~gad~lHvDvmDG~fvpn~---t~G----------~~~v~~lr~~~~~~~dvhLmv~-d   68 (231)
T 3ctl_A            3 ISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPNL---TLS----------PFFVSQVKKLATKPLDCHLMVT-R   68 (231)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHTTCSCEEEEEECSSSSSCC---CBC----------HHHHHHHHTTCCSCEEEEEESS-C
T ss_pred             EEeehhhCChhhHHHHHHHHHcCCCEEEEEEEeCccCccc---hhc----------HHHHHHHHhccCCcEEEEEEec-C
Confidence            45677778887888888888448885  565445412221   122          2468888888788888776542 3


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecc-cC---------------------------------------------CCCC---
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRK-VA---------------------------------------------DRPR---  186 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~-~~---------------------------------------------~~~~---  186 (326)
                      +   ..+++.+.++|+|.|++|.-. ..                                             .++.   
T Consensus        69 p---~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ~  145 (231)
T 3ctl_A           69 P---QDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQP  145 (231)
T ss_dssp             G---GGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSCC
T ss_pred             H---HHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCcc
Confidence            3   335678888899999988655 21                                             0001   


Q ss_pred             -CcCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec-cchhcCc
Q 020428          187 -DPAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRIKTAAGASSVMAA-RGALWNA  239 (326)
Q Consensus       187 -~~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG-r~~l~~P  239 (326)
                       .+..++-++++++..     +++|.+-|||+ .+.+..+. ..|||.+++| |+++..+
T Consensus       146 f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~-~aGAd~~V~G~saif~~~  203 (231)
T 3ctl_A          146 FIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLM-AAGADVFIVGTSGLFNHA  203 (231)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHH-HHTCCEEEECTTTTGGGC
T ss_pred             ccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHH-HcCCCEEEEccHHHhCCC
Confidence             123356666666654     68999999997 67788888 6899999999 9866533

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=97.91  E-value=0.00015  Score=65.43  Aligned_cols=196  Identities=13%  Similarity=0.035  Sum_probs=127.4

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeC-ceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-C--CCCH
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGE-EIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-G--TSDA   87 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te-~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-~--g~~~   87 (326)
                      |.+.-|....+++.+.|.+.+++. ...+..+.+      .+.....+.+.  ....-......+.|+++-+ +  |.++
T Consensus        20 ~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~------pD~~~vt~~em--~~~~~~I~~~~~~pviaD~d~Gyg~~~   91 (275)
T 2ze3_A           20 LPNAWDVASARLLEAAGFTAIGTTSAGIAHARGR------TDGQTLTRDEM--GREVEAIVRAVAIPVNADIEAGYGHAP   91 (275)
T ss_dssp             ECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCC------CSSSSSCHHHH--HHHHHHHHHHCSSCEEEECTTCSSSSH
T ss_pred             EecccCHHHHHHHHHcCCCEEEECcHHHHHhCCC------CCCCCCCHHHH--HHHHHHHHhhcCCCEEeecCCCCCCCH
Confidence            346679999999999999888765 211112211      11111110000  0000111112235899888 3  4679


Q ss_pred             HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCCC---------
Q 020428           88 VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLLK---------  154 (326)
Q Consensus        88 ~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g~---------  154 (326)
                      +...+.++.+.+ |+.+|.|--+...       .| .-+-..+...+-|++++++.   ++|+.+.-|..-         
T Consensus        92 ~~~~~~v~~l~~aGaagv~iED~~~~-------~~-k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~  163 (275)
T 2ze3_A           92 EDVRRTVEHFAALGVAGVNLEDATGL-------TP-TELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATD  163 (275)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECBCSS-------SS-SCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSH
T ss_pred             HHHHHHHHHHHHcCCcEEEECCCcCC-------CC-CccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccc
Confidence            888888888776 9999999866431       12 23446666667777776653   688888777632         


Q ss_pred             --ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC--CCCCHHHHHHHHHhcCCcEEE
Q 020428          155 --SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG--DVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       155 --~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG--gI~s~~d~~~~l~~~Gad~Vm  230 (326)
                        ..+++++-++.++++|+|.|.+++.         .+.+.++++.+.+++|+-.++  +..|.+   ++- +.|+..|.
T Consensus       164 ~~~~~~ai~Ra~ay~eAGAd~i~~e~~---------~~~~~~~~i~~~~~~P~n~~~~~~~~~~~---eL~-~lGv~~v~  230 (275)
T 2ze3_A          164 EERLAETVRRGQAYADAGADGIFVPLA---------LQSQDIRALADALRVPLNVMAFPGSPVPR---ALL-DAGAARVS  230 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTC---------CCHHHHHHHHHHCSSCEEEECCTTSCCHH---HHH-HTTCSEEE
T ss_pred             hhhHHHHHHHHHHHHHCCCCEEEECCC---------CCHHHHHHHHHhcCCCEEEecCCCCCCHH---HHH-HcCCcEEE
Confidence              2467889999999999999999764         356889999999999987764  455553   444 68999999


Q ss_pred             eccchh
Q 020428          231 AARGAL  236 (326)
Q Consensus       231 iGr~~l  236 (326)
                      .|-.++
T Consensus       231 ~~~~~~  236 (275)
T 2ze3_A          231 FGQSLM  236 (275)
T ss_dssp             CTTHHH
T ss_pred             EChHHH
Confidence            885543

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=97.89  E-value=0.00025  Score=68.29  Aligned_cols=136  Identities=10%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      ..|+.-+=|..++-+..+   ....|+|.|=|++.+               .+++.+.++++..++ .+..+.+-+.   
T Consensus       108 ~lPvLrKDFI~d~~Qi~e---a~~~GAD~ILLi~a~---------------l~~~~l~~l~~~a~~-lgm~~LvEvh---  165 (452)
T 1pii_A          108 PQPILCKDFIIDPYQIYL---ARYYQADACLLMLSV---------------LDDDQYRQLAAVAHS-LEMGVLTEVS---  165 (452)
T ss_dssp             CSCEEEESCCCSHHHHHH---HHHTTCSEEEEETTT---------------CCHHHHHHHHHHHHH-TTCEEEEEEC---
T ss_pred             CCCeEEEeccCCHHHHHH---HHHcCCCEEEEEccc---------------CCHHHHHHHHHHHHH-cCCeEEEEeC---
Confidence            457776667777665444   222489999998753               124678888888877 4888888773   


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                          +.+.++.+.++|++.|-+..|.-..   -..|++...++.+.+  ++++|+-|||.|++|+.++. .. +|+|.||
T Consensus       166 ----~~eE~~~A~~lga~iIGinnr~L~t---~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~-~~-a~avLVG  236 (452)
T 1pii_A          166 ----NEEEQERAIALGAKVVGINNRDLRD---LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELS-HF-ANGFLIG  236 (452)
T ss_dssp             ----SHHHHHHHHHTTCSEEEEESEETTT---TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHT-TT-CSEEEEC
T ss_pred             ----CHHHHHHHHHCCCCEEEEeCCCCCC---CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHH-Hh-CCEEEEc
Confidence                3455677778999999999986542   356888888888876  68999999999999999999 57 9999999


Q ss_pred             cchhcCccc
Q 020428          233 RGALWNASI  241 (326)
Q Consensus       233 r~~l~~P~l  241 (326)
                      .+++..++.
T Consensus       237 ealmr~~d~  245 (452)
T 1pii_A          237 SALMAHDDL  245 (452)
T ss_dssp             HHHHTCSCH
T ss_pred             HHHcCCcCH
Confidence            999986654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.87  E-value=2.4e-05  Score=76.48  Aligned_cols=96  Identities=18%  Similarity=0.147  Sum_probs=61.9

Q ss_pred             HHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------CCCCcCC---HHHHHHHHHhcC
Q 020428          133 DILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------RPRDPAK---WGEIADIVAALS  202 (326)
Q Consensus       133 ~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------~~~~~~~---~~~i~~i~~~~~  202 (326)
                      +.++.+++.+++|+.+|-=.  +    .+-++.+.  |+|.|.+ |.....       ...+.+.   +..++++.+.++
T Consensus       258 ~~I~~l~~~~~vpvi~k~v~--~----~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~  328 (486)
T 2cu0_A          258 KSMKEMRQKVDADFIVGNIA--N----PKAVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYG  328 (486)
T ss_dssp             HHHHHHHHTCCSEEEEEEEC--C----HHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhCCccccCCcC--C----HHHHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcC
Confidence            34455555556666655321  1    22334444  9999998 332111       0011122   233455666678


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +|||+.|||.+..|+.+++ ..|||+||+|+.++..
T Consensus       329 vpVia~GGi~~~~di~kal-alGA~~v~~g~~~~~~  363 (486)
T 2cu0_A          329 LYVIADGGIRYSGDIVKAI-AAGADAVMLGNLLAGT  363 (486)
T ss_dssp             CEEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTB
T ss_pred             CcEEecCCCCCHHHHHHHH-HcCCCceeeChhhhcC
Confidence            9999999999999999999 5999999999999853

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=97.86  E-value=0.00013  Score=65.83  Aligned_cols=119  Identities=18%  Similarity=0.101  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCcccccccccccccc---CChHHHHHHHHHHhhcccCcEEEEecC--C-CChHH-HHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL---SKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQD-TVE  161 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~---~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~~-~~e  161 (326)
                      ...++...++.|+|.||+=+          .+|..+.   .+.+.+.+-+++++++++ +..+|.=+  + .+.++ ...
T Consensus       102 K~~Ea~~Av~~GAdEIDmVi----------nig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~  170 (297)
T 4eiv_A          102 VSLEAVGALKDGADEIECLI----------DWRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISR  170 (297)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC----------CTHHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEeee----------eHHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHH
Confidence            45566666767999999732          2444444   577888888899988884 34555544  3 23334 567


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc------------------------CCcEEEe-CCCCCHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL------------------------SIPVIAN-GDVFEYDD  216 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~------------------------~iPVi~n-GgI~s~~d  216 (326)
                      .++...++|+|+|-    |..+...+.+..+.++-+++.+                        ++.|=++ |||+|.+|
T Consensus       171 A~~ia~~AGADFVK----TSTGf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~  246 (297)
T 4eiv_A          171 AAVAALEGGADFLQ----TSSGLGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAET  246 (297)
T ss_dssp             HHHHHHHHTCSEEE----CCCSSSSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHH
T ss_pred             HHHHHHHhCCCEEE----cCCCCCCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHH
Confidence            88899999999994    4444434455666555444433                        4778899 99999999


Q ss_pred             HHHHHH
Q 020428          217 FQRIKT  222 (326)
Q Consensus       217 ~~~~l~  222 (326)
                      +..+++
T Consensus       247 A~~~i~  252 (297)
T 4eiv_A          247 ADFLMQ  252 (297)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999995

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=97.84  E-value=0.00027  Score=64.08  Aligned_cols=201  Identities=14%  Similarity=0.068  Sum_probs=125.5

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCce--ecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-CC-CCH
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEI--IDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-GT-SDA   87 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-~g-~~~   87 (326)
                      |.+.-|..+.+++.+.|.+.+++.-.  +...+.+      .+.+...+.+.  ....-........|+++-+ +| .++
T Consensus        25 ~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~------pD~~~vt~~em--~~~~~~I~r~~~~PviaD~d~Gyg~~   96 (287)
T 3b8i_A           25 TASVFDPMSARIAADLGFECGILGGSVASLQVLAA------PDFALITLSEF--VEQATRIGRVARLPVIADADHGYGNA   96 (287)
T ss_dssp             CEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSC------CSSSCSCHHHH--HHHHHHHHTTCSSCEEEECTTCSSSH
T ss_pred             EecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCC------CCCCCCCHHHH--HHHHHHHHhcCCCCEEEECCCCCCCH
Confidence            34677999999999999987775422  1111111      11111110000  0000111223345888887 33 288


Q ss_pred             HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC---CChHHHHHH
Q 020428           88 VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL---KSSQDTVEL  162 (326)
Q Consensus        88 ~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g---~~~~~~~e~  162 (326)
                      +...+.++.+.+ |+.+|.|--+.. ++.+....|.  +-..+...+-|++++++- +.++.+--|..   ...+++++-
T Consensus        97 ~~~~~~v~~l~~aGa~gv~iED~~~-pKrcgh~~gk--l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~R  173 (287)
T 3b8i_A           97 LNVMRTVVELERAGIAALTIEDTLL-PAQFGRKSTD--LICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQR  173 (287)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECBCC-SCCTTTCTTC--BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCeEEEEcCCCC-ccccCCCCCC--ccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHH
Confidence            888888888776 999999987642 3333333343  556666667777776653 33444444431   223689999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe-CC---CCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN-GD---VFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n-Gg---I~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.++++|+|.|.+++.         .+.+.++++.+.+++|++.. ||   ..|.+   ++- +.|+..|..|-.++
T Consensus       174 a~ay~eAGAd~i~~e~~---------~~~~~~~~i~~~~~~P~ii~~~g~~~~~~~~---eL~-~lGv~~v~~~~~~~  238 (287)
T 3b8i_A          174 TLAYQEAGADGICLVGV---------RDFAHLEAIAEHLHIPLMLVTYGNPQLRDDA---RLA-RLGVRVVVNGHAAY  238 (287)
T ss_dssp             HHHHHHTTCSEEEEECC---------CSHHHHHHHHTTCCSCEEEECTTCGGGCCHH---HHH-HTTEEEEECCCHHH
T ss_pred             HHHHHHcCCCEEEecCC---------CCHHHHHHHHHhCCCCEEEeCCCCCCCCCHH---HHH-HcCCcEEEEChHHH
Confidence            99999999999999864         25688999999999999843 33   34444   444 68999998886544

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=97.82  E-value=0.00022  Score=65.53  Aligned_cols=200  Identities=14%  Similarity=0.050  Sum_probs=123.2

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCce--ecccccccccccccccCcccccc--cCCcceeeecccCCCCcEEEEE-CC-CC
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEI--IDHKLLKCERRVNEYIGSTDFVE--KGTDSVVFRTCHQERNHVVFQM-GT-SD   86 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i--~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~vQl-~g-~~   86 (326)
                      .+.-|....+++.+.|.+.+++.-.  +...+.+      .+.+...+-+  ...+. +.+..+  +.|+++-+ +| .+
T Consensus        44 ~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~------pD~~~vt~~em~~~~~~-I~r~~~--~~PviaD~d~Gyg~  114 (318)
T 1zlp_A           44 PGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGL------PDFGLLTTTEVVEATRR-ITAAAP--NLCVVVDGDTGGGG  114 (318)
T ss_dssp             EEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCC------CSSSCSCHHHHHHHHHH-HHHHSS--SSEEEEECTTCSSS
T ss_pred             ecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCC------CCCCCCCHHHHHHHHHH-HHhhcc--CCCEEEeCCCCCCC
Confidence            3667899999999999988876532  2111211      1111111000  00000 111121  46899888 33 27


Q ss_pred             HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCC----hHHHH
Q 020428           87 AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKS----SQDTV  160 (326)
Q Consensus        87 ~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~----~~~~~  160 (326)
                      ++...+.++.+.+ |+.+|.|--+.. ++++..-.|..| -..+...+-|++++++. +.++.+--|..-.    .++++
T Consensus       115 ~~~v~~tv~~l~~aGaagv~iED~~~-~k~cgH~~gk~L-~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai  192 (318)
T 1zlp_A          115 PLNVQRFIRELISAGAKGVFLEDQVW-PKKCGHMRGKAV-VPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGI  192 (318)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECBCS-SCCCSSSSCCCB-CCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEECCCCC-CccccCCCCCcc-CCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHH
Confidence            8888888888776 999999986642 333322223334 44555555556665543 3455555554221    25788


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe---C---CCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN---G---DVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n---G---gI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +-++.++++|+|.|.+++.         .+.+.++++.+.+++|+.+|   |   ...|.+   ++- +.|+..|..|-.
T Consensus       193 ~Ra~Ay~eAGAd~i~~e~~---------~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~---eL~-~lGv~~v~~~~~  259 (318)
T 1zlp_A          193 RRANLYKEAGADATFVEAP---------ANVDELKEVSAKTKGLRIANMIEGGKTPLHTPE---EFK-EMGFHLIAHSLT  259 (318)
T ss_dssp             HHHHHHHHTTCSEEEECCC---------CSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHH---HHH-HHTCCEEEECSH
T ss_pred             HHHHHHHHcCCCEEEEcCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHH---HHH-HcCCeEEEEchH
Confidence            9999999999999999864         25788999999999999765   3   244544   344 689999999865


Q ss_pred             hh
Q 020428          235 AL  236 (326)
Q Consensus       235 ~l  236 (326)
                      ++
T Consensus       260 ~~  261 (318)
T 1zlp_A          260 AV  261 (318)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A

Probab=97.81  E-value=0.00031  Score=66.86  Aligned_cols=125  Identities=17%  Similarity=0.118  Sum_probs=100.8

Q ss_pred             HHHHHHHHHH-hhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHH
Q 020428           87 AVRALTAAKM-VCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        87 ~~~~~~aa~~-~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      ++++.+.++. +.+ ||..+-+..|                .+++.-.+.++++|+++ ++++.+...-+|+..++++++
T Consensus       169 ~e~~~~~a~~~~~~~G~~~~K~KvG----------------~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~  232 (398)
T 4dye_A          169 PKAMAEHAVRVVEEGGFDAVKLKGT----------------TDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAG  232 (398)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECC----------------SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEecC----------------CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHH
Confidence            5777766554 566 9999998765                13566677888888886 677888888889999999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+++.|+.+|-       |..  + |++..+++++.+++||.+...+.+..++.++++...+|.|++--+-.+
T Consensus       233 ~~l~~~~i~~iE-------qP~--~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~G  296 (398)
T 4dye_A          233 IALEELDLEYLE-------DPC--V-GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWG  296 (398)
T ss_dssp             HHHGGGCCSEEE-------CCS--S-HHHHHHHHHHHCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHT
T ss_pred             HHHhhcCCCEEc-------CCC--C-CHHHHHHHHhhCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccC
Confidence            999999999983       222  2 788899999999999999999999999999997666899988654443

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.79  E-value=5.1e-05  Score=65.81  Aligned_cols=74  Identities=12%  Similarity=0.030  Sum_probs=56.3

Q ss_pred             HHHHHHcCCcEEEEeecc--c-CCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          163 ARRIEKTGVSALAVHGRK--V-ADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~--~-~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +..++ .|+|+|.+..--  . ...+..+.+|+.++++++.  .++||++.|||+ ++.+.+++ ..|++||.++++++.
T Consensus       101 ~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~-~~Ga~gVav~s~i~~  177 (210)
T 3ceu_A          101 VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIK-DFGFGGAVVLGDLWN  177 (210)
T ss_dssp             HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHH-HTTCSEEEESHHHHT
T ss_pred             HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHH-HhCCCEEEEhHHhHc
Confidence            44445 899999975531  1 1122245689999999887  689999999998 89999999 599999999999986


Q ss_pred             Cc
Q 020428          238 NA  239 (326)
Q Consensus       238 ~P  239 (326)
                      .+
T Consensus       178 ~~  179 (210)
T 3ceu_A          178 KF  179 (210)
T ss_dssp             TC
T ss_pred             CC
Confidence            33

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=97.78  E-value=0.00065  Score=60.95  Aligned_cols=157  Identities=13%  Similarity=0.156  Sum_probs=97.4

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceeccc-ccccccccccccCcccccccCCccee---eeccc-CCCCcEEEEE-CCC
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHK-LLKCERRVNEYIGSTDFVEKGTDSVV---FRTCH-QERNHVVFQM-GTS   85 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~p~~vQl-~g~   85 (326)
                      |.+.-|..+.+++.+.|++.+.+....... +.+      .+.....+     ..++   -.... ....++++-+ ||+
T Consensus        21 ~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~------~dt~~vTl-----demi~h~~aV~r~~~~~~vvaD~pfgs   89 (275)
T 1o66_A           21 MLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGR------KSTLPVSL-----RDMCYHTECVARGAKNAMIVSDLPFGA   89 (275)
T ss_dssp             EEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCC------SSSTTCCH-----HHHHHHHHHHHHHCSSSEEEEECCTTS
T ss_pred             EEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCC------CCCCCCCH-----HHHHHHHHHHHhhCCCCeEEEECCCCC
Confidence            346679999999999999988876322211 111      00000000     0100   00111 1223566666 443


Q ss_pred             ---CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---------
Q 020428           86 ---DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---------  152 (326)
Q Consensus        86 ---~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---------  152 (326)
                         ++++..+.|.++.+ |+++|.|--|                   +...+.|+++.++ ++||..-+.+         
T Consensus        90 y~~s~~~a~~na~rl~kaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPQs~~~~g  149 (275)
T 1o66_A           90 YQQSKEQAFAAAAELMAAGAHMVKLEGG-------------------VWMAETTEFLQMR-GIPVCAHIGLTPQSVFAFG  149 (275)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCSEEEEECS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGTTC--
T ss_pred             ccCCHHHHHHHHHHHHHcCCcEEEECCc-------------------HHHHHHHHHHHHc-CCCeEeeeccCceeecccC
Confidence               68888777666655 9999998643                   2344556666554 7887643332         


Q ss_pred             -----C--CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 -----L--KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 -----g--~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                           +  ...++.++-|+.++++|++.|.+.+.        |  -+..++|.+.+++|+|+-|
T Consensus       150 gf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v--------p--~~~a~~it~~l~iP~igIG  203 (275)
T 1o66_A          150 GYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECV--------L--AELAKKVTETVSCPTIGIG  203 (275)
T ss_dssp             ---------CHHHHHHHHHHHHHTTCSEEEEESC--------C--HHHHHHHHHHCSSCEEEES
T ss_pred             CeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecC--------C--HHHHHHHHHhCCCCEEEEC
Confidence                 1  12357888999999999999999764        1  3678899999999999866

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=97.76  E-value=4.1e-05  Score=66.76  Aligned_cols=134  Identities=11%  Similarity=0.057  Sum_probs=80.0

Q ss_pred             cEEEE--ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           77 HVVFQ--MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQ--l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      |+++-  +. ..|+.+.+.+  +..|+|+|-++.-.+                .+.+.++++.+++. +++..+.+ ++.
T Consensus        61 ~i~ld~~l~-d~p~~~~~~~--~~aGad~i~vh~~~~----------------~~~~~~~~~~~~~~-g~~~~~d~-l~~  119 (218)
T 3jr2_A           61 ILVCDMKTT-DGGAILSRMA--FEAGADWITVSAAAH----------------IATIAACKKVADEL-NGEIQIEI-YGN  119 (218)
T ss_dssp             EEEEEEEEC-SCHHHHHHHH--HHHTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEEC-CSS
T ss_pred             cEEEEEeec-ccHHHHHHHH--HhcCCCEEEEecCCC----------------HHHHHHHHHHHHHh-CCccceee-eec
Confidence            55543  33 4566654333  223999999985321                23456677777654 55444322 222


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          155 SSQDTVELARRIEKTGVSALAVH-GRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      .  +. +-++.+.+.|+|++.++ +.+.. ........+.++++++.  .++|+++.||| +++.+.+++ ..|||+|.+
T Consensus       120 ~--T~-~~~~~~~~~g~d~v~~~~~~~~~-~~g~~~~~~~l~~i~~~~~~~~pi~v~GGI-~~~~~~~~~-~aGAd~vvv  193 (218)
T 3jr2_A          120 W--TM-QDAKAWVDLGITQAIYHRSRDAE-LAGIGWTTDDLDKMRQLSALGIELSITGGI-VPEDIYLFE-GIKTKTFIA  193 (218)
T ss_dssp             C--CH-HHHHHHHHTTCCEEEEECCHHHH-HHTCCSCHHHHHHHHHHHHTTCEEEEESSC-CGGGGGGGT-TSCEEEEEE
T ss_pred             C--CH-HHHHHHHHcCccceeeeeccccc-cCCCcCCHHHHHHHHHHhCCCCCEEEECCC-CHHHHHHHH-HcCCCEEEE
Confidence            1  12 34555566799998764 32221 10011123344455443  48999999999 589998888 699999999


Q ss_pred             ccchhc
Q 020428          232 ARGALW  237 (326)
Q Consensus       232 Gr~~l~  237 (326)
                      ||++..
T Consensus       194 GsaI~~  199 (218)
T 3jr2_A          194 GRALAG  199 (218)
T ss_dssp             SGGGSH
T ss_pred             chhhcC
Confidence            999764

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=97.76  E-value=0.00046  Score=62.88  Aligned_cols=203  Identities=14%  Similarity=0.071  Sum_probs=118.6

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeC-ceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-CC-CCHHH
Q 020428           13 VRVGTLPFRLLAAQYGADITYGE-EIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-GT-SDAVR   89 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te-~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-~g-~~~~~   89 (326)
                      .+.-|....+++.+.|.+.+++. ...+..+..      .+.+...+.+.  ....-......+.|+++-+ +| .+++.
T Consensus        24 ~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~------pD~~~vt~~em--~~~~~~I~~~~~~PviaD~d~Gyg~~~~   95 (295)
T 1s2w_A           24 MEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGV------RDSNEASWTQV--VEVLEFMSDASDVPILLDADTGYGNFNN   95 (295)
T ss_dssp             EEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------------CHHH--HHHHHHHHHTCSSCEEEECCSSCSSHHH
T ss_pred             ecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCC------CCCCCCCHHHH--HHHHHHHHhcCCCCEEecCCCCCCCHHH
Confidence            36679999999999999877765 211112211      11111110000  0000111223346888887 33 25777


Q ss_pred             HHHHHHHhhc-CCCEEEEccCCCcccccccccc-ccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-----CChHHHHH
Q 020428           90 ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMG-AALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-----KSSQDTVE  161 (326)
Q Consensus        90 ~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G-~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-----~~~~~~~e  161 (326)
                      ..+.++.+.+ |+.+|.|--+.. ++++..-.| ..-+...+...+-|++++++- +.++.+--|..     ...+++++
T Consensus        96 v~~~v~~l~~aGaagv~iED~~~-~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~  174 (295)
T 1s2w_A           96 ARRLVRKLEDRGVAGACLEDKLF-PKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALK  174 (295)
T ss_dssp             HHHHHHHHHHTTCCEEEEECBCC---------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEECCCCC-CccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHH
Confidence            8888877766 999999986642 222221111 122334444455555555543 44455555542     22478999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEEEeCC---CCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVIANGD---VFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi~nGg---I~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      -++.++++|+|.|.+++.        ..+.+.++++.+.++  +|+++|-+   -.+   ..++- +.|+..|..|-.++
T Consensus       175 Ra~ay~eAGAd~i~~e~~--------~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~---~~eL~-~lGv~~v~~~~~~~  242 (295)
T 1s2w_A          175 RAEAYRNAGADAILMHSK--------KADPSDIEAFMKAWNNQGPVVIVPTKYYKTP---TDHFR-DMGVSMVIWANHNL  242 (295)
T ss_dssp             HHHHHHHTTCSEEEECCC--------SSSSHHHHHHHHHHTTCSCEEECCSTTTTSC---HHHHH-HHTCCEEEECSHHH
T ss_pred             HHHHHHHcCCCEEEEcCC--------CCCHHHHHHHHHHcCCCCCEEEeCCCCCCCC---HHHHH-HcCCcEEEEChHHH
Confidence            999999999999999852        224678899999887  99999843   344   44444 68999999885533

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=97.74  E-value=0.00018  Score=61.27  Aligned_cols=75  Identities=21%  Similarity=0.292  Sum_probs=61.4

Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      |......-.+.+++...|++-+-.        |.. -+.++++++.+++|||+.|+|+|.+|+.+++ ..||++|..++.
T Consensus       112 DS~al~~~~~~i~~~~PD~iEiLP--------Gi~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al-~aGA~aVsTs~~  181 (192)
T 3kts_A          112 DSSAYNKGVALIQKVQPDCIELLP--------GII-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVI-ASGAIAVTTSNK  181 (192)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEEC--------TTC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHH-TTTEEEEEECCG
T ss_pred             EcchHHHHHHHHhhcCCCEEEECC--------chh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-HcCCeEEEeCCH
Confidence            444455667778888889886652        222 3789999999999999999999999999999 699999999998


Q ss_pred             hhcCc
Q 020428          235 ALWNA  239 (326)
Q Consensus       235 ~l~~P  239 (326)
                      .||+-
T Consensus       182 ~LW~~  186 (192)
T 3kts_A          182 HLWEG  186 (192)
T ss_dssp             GGGTT
T ss_pred             HHhCc
Confidence            88764

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.73  E-value=9.9e-05  Score=64.93  Aligned_cols=148  Identities=9%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----------cccccccccccCChHHHHHH----------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----------SVSGGMGAALLSKPELIHDI----------  134 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----------~~~~~~G~~l~~~p~~~~~i----------  134 (326)
                      |++.=+.+.++++....++.+.+ |+..||+.+-.|...           ...-|.|.-  -+++.+...          
T Consensus        35 ~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTV--lt~~~a~~Ai~AGA~fIvs  112 (232)
T 4e38_A           35 KVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTI--LNGEQALAAKEAGATFVVS  112 (232)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECC--CSHHHHHHHHHHTCSEEEC
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCc--CCHHHHHHHHHcCCCEEEe
Confidence            67777789999999999998877 899999977655410           011233432  234444433          


Q ss_pred             -------HHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEE
Q 020428          135 -------LTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVI  206 (326)
Q Consensus       135 -------v~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi  206 (326)
                             ++..++. ++|+..-+.       +.+.+..+.++|+|.|-+..-.    ..+  ..++++.++.-+ ++|++
T Consensus       113 P~~~~~vi~~~~~~-gi~~ipGv~-------TptEi~~A~~~Gad~vK~FPa~----~~g--G~~~lkal~~p~p~ip~~  178 (232)
T 4e38_A          113 PGFNPNTVRACQEI-GIDIVPGVN-------NPSTVEAALEMGLTTLKFFPAE----ASG--GISMVKSLVGPYGDIRLM  178 (232)
T ss_dssp             SSCCHHHHHHHHHH-TCEEECEEC-------SHHHHHHHHHTTCCEEEECSTT----TTT--HHHHHHHHHTTCTTCEEE
T ss_pred             CCCCHHHHHHHHHc-CCCEEcCCC-------CHHHHHHHHHcCCCEEEECcCc----ccc--CHHHHHHHHHHhcCCCee
Confidence                   3333222 444444331       3344566678999999886531    111  358899998865 79999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      ..|||. ++.+.+.+ ..|+.++.+|+.+ .+|.+..
T Consensus       179 ptGGI~-~~n~~~~l-~aGa~~~vgGs~l-~~~~~i~  212 (232)
T 4e38_A          179 PTGGIT-PSNIDNYL-AIPQVLACGGTWM-VDKKLVT  212 (232)
T ss_dssp             EBSSCC-TTTHHHHH-TSTTBCCEEECGG-GCHHHHH
T ss_pred             eEcCCC-HHHHHHHH-HCCCeEEEECchh-cChHHhh
Confidence            999995 89999999 6899998887654 3444443

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=97.72  E-value=0.00031  Score=62.29  Aligned_cols=102  Identities=8%  Similarity=0.161  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      +++.+.++++...+ .+..+.|-+.       ..+.++.+.+.|++.|-|.+|.-.   +-..|.+...++...+  ++.
T Consensus       138 ~~~~l~~l~~~A~~-lGl~~LvEVh-------~~~El~rAl~~~a~iIGINNRnL~---tf~vdl~~t~~L~~~ip~~~~  206 (258)
T 4a29_A          138 TERELESLLEYARS-YGMEPLILIN-------DENDLDIALRIGARFIGIMSRDFE---TGEINKENQRKLISMIPSNVV  206 (258)
T ss_dssp             CHHHHHHHHHHHHH-TTCCCEEEES-------SHHHHHHHHHTTCSEEEECSBCTT---TCCBCHHHHHHHHTTSCTTSE
T ss_pred             CHHHHHHHHHHHHH-HhHHHHHhcc-------hHHHHHHHhcCCCcEEEEeCCCcc---ccccCHHHHHHHHhhCCCCCE
Confidence            45667777766654 4666666653       233355666789999988888654   2345788888888776  578


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +|+-+||.|++|+.++. ..|+|+|.||.+++.+|.
T Consensus       207 ~VsESGI~t~~dv~~l~-~~G~~a~LVGealmr~~d  241 (258)
T 4a29_A          207 KVAKLGISERNEIEELR-KLGVNAFLISSSLMRNPE  241 (258)
T ss_dssp             EEEEESSCCHHHHHHHH-HTTCCEEEECHHHHHCTT
T ss_pred             EEEcCCCCCHHHHHHHH-HCCCCEEEECHHHhCCCc
Confidence            89999999999999998 699999999999999875

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=97.69  E-value=5.6e-05  Score=66.43  Aligned_cols=137  Identities=8%  Similarity=0.070  Sum_probs=94.8

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHH---HHhhcccCcEEEEec
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILT---MLKRNLDVPVTCKIR  151 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~---~v~~~~~~pv~vK~r  151 (326)
                      +.|+.+.|..+||+.+.+.   +.+ +|.|-+|......             +   +.+.++   .+++. +..+.+-+.
T Consensus        64 ~~~~dvhLmv~dp~~~i~~---~~~-Ad~itvH~ea~~~-------------~---~~~~i~~~~~i~~~-G~k~gvaln  122 (227)
T 1tqx_A           64 SIFFDVHLMVEYPEKYVPL---LKT-SNQLTFHFEALNE-------------D---TERCIQLAKEIRDN-NLWCGISIK  122 (227)
T ss_dssp             SCEEEEEEESSCGGGGGGG---CTT-SSEEEEEGGGGTT-------------C---HHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             CCcEEEEEEEcCHHHHHHH---HHh-CCEEEEeecCCcc-------------C---HHHHHHHHHHHHHc-CCeEEEEeC
Confidence            3589999999999866532   223 7899998653210             2   334555   77654 655555553


Q ss_pred             CCCChHHHHHHHHHHHHcC-CcEEEEeecc---cCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428          152 LLKSSQDTVELARRIEKTG-VSALAVHGRK---VADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~---~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                      ..    +..+.++.+.+.| +|.|.+....   ..|.+ .+..++-++++++.. +++|.+-|||. .+.+..+. ..||
T Consensus       123 p~----tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f-~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~-~aGA  195 (227)
T 1tqx_A          123 PK----TDVQKLVPILDTNLINTVLVMTVEPGFGGQSF-MHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISA-SHGA  195 (227)
T ss_dssp             TT----SCGGGGHHHHTTTCCSEEEEESSCTTCSSCCC-CGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHH-HHTC
T ss_pred             CC----CcHHHHHHHhhcCCcCEEEEeeeccCCCCccc-chHHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHH-HcCC
Confidence            32    3345566666766 9999665443   33433 455688888888876 78999999997 78999999 6999


Q ss_pred             cEEEeccchhcCc
Q 020428          227 SSVMAARGALWNA  239 (326)
Q Consensus       227 d~VmiGr~~l~~P  239 (326)
                      |.+++||+++..+
T Consensus       196 d~~V~GsaIf~~~  208 (227)
T 1tqx_A          196 NIIVAGTSIFNAE  208 (227)
T ss_dssp             CEEEESHHHHTCS
T ss_pred             CEEEEeHHHhCCC
Confidence            9999999977644

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.68  E-value=7e-05  Score=73.27  Aligned_cols=70  Identities=19%  Similarity=0.247  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+..+.++.+.++|+|.|.++.....    .+..++.++++++.. ++||++ |++.|.+++..+. +.|||+|.+|
T Consensus       228 ~~~~~~a~~l~~aG~d~I~id~a~g~----~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~-~aGaD~I~vg  298 (490)
T 4avf_A          228 ADTGERVAALVAAGVDVVVVDTAHGH----SKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALA-EAGADAVKVG  298 (490)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSCCS----BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred             cchHHHHHHHhhcccceEEecccCCc----chhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHH-HcCCCEEEEC
Confidence            35678889999999999999854211    223468889999887 788887 7899999999998 6999999986

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.67  E-value=9.6e-05  Score=64.81  Aligned_cols=146  Identities=13%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc--c---------ccccccccccCChHHHHH-----------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF--S---------VSGGMGAALLSKPELIHD-----------  133 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~--~---------~~~~~G~~l~~~p~~~~~-----------  133 (326)
                      |++.=|-+.+++++.+.++.+.+ |++.|++.+-.|...  +         ..-++|. ++ +.+.+..           
T Consensus        18 ~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl-~~d~~~~A~~aGAd~v~~   95 (224)
T 1vhc_A           18 KIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGT-VL-TAEQVVLAKSSGADFVVT   95 (224)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEES-CC-SHHHHHHHHHHTCSEEEC
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCc-Ee-eHHHHHHHHHCCCCEEEE
Confidence            56666677888888888877766 788888875433210  0         0112333 22 3333332           


Q ss_pred             ------HHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc-CCcE
Q 020428          134 ------ILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL-SIPV  205 (326)
Q Consensus       134 ------iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~-~iPV  205 (326)
                            +++..++ .+.|+..-+       .+.+.+..+.+.|+|+|-++.-       .+. -.+.++.++..+ ++|+
T Consensus        96 p~~d~~v~~~ar~-~g~~~i~Gv-------~t~~e~~~A~~~Gad~vk~Fpa-------~~~gG~~~lk~l~~~~~~ipv  160 (224)
T 1vhc_A           96 PGLNPKIVKLCQD-LNFPITPGV-------NNPMAIEIALEMGISAVKFFPA-------EASGGVKMIKALLGPYAQLQI  160 (224)
T ss_dssp             SSCCHHHHHHHHH-TTCCEECEE-------CSHHHHHHHHHTTCCEEEETTT-------TTTTHHHHHHHHHTTTTTCEE
T ss_pred             CCCCHHHHHHHHH-hCCCEEecc-------CCHHHHHHHHHCCCCEEEEeeC-------ccccCHHHHHHHHhhCCCCeE
Confidence                  2333333 344443322       1233356677899999999551       111 267889999887 7999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      ++.|||. ++.+.++++..|+++|. |+++...+.+
T Consensus       161 vaiGGI~-~~N~~~~l~agga~~v~-gS~i~~~~~i  194 (224)
T 1vhc_A          161 MPTGGIG-LHNIRDYLAIPNIVACG-GSWFVEKKLI  194 (224)
T ss_dssp             EEBSSCC-TTTHHHHHTSTTBCCEE-ECGGGCHHHH
T ss_pred             EEECCcC-HHHHHHHHhcCCCEEEE-EchhcCcchh
Confidence            9999994 68899999433999999 9988776665

>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54}

Probab=97.66  E-value=0.00044  Score=65.22  Aligned_cols=133  Identities=9%  Similarity=0.159  Sum_probs=100.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc---CcEEEEecC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD---VPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~---~pv~vK~r~  152 (326)
                      |+-..+++.+++.+.+.++.+. +||..+-+..|.               .+++.-.+.+++++++++   +.+.+...-
T Consensus       153 p~~~~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~~l~vDaN~  217 (377)
T 2pge_A          153 PVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA---------------IDFDKECALLAGIRESFSPQQLEIRVDANG  217 (377)
T ss_dssp             EBCEEECCCCHHHHHHHHHHHHHTTCSEEEEEC------------------CHHHHHHHHHHHHHHSCTTTCEEEEECTT
T ss_pred             EEeEEecCCCHHHHHHHHHHHHHHhhhhheeecCC---------------CChHHHHHHHHHHHHHcCCCCceEEEECCC
Confidence            4444566678888877666554 599999987653               256777788888888764   566666666


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHH--HHHHHHhcCCcEEE
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDD--FQRIKTAAGASSVM  230 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d--~~~~l~~~Gad~Vm  230 (326)
                      +|+.++++++++.+++.++.+|-       | +..+.||+..+++++.+++||.+.-.+.|..+  +.++++...+|.|+
T Consensus       218 ~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~  289 (377)
T 2pge_A          218 AFSPANAPQRLKRLSQFHLHSIE-------Q-PIRQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQYII  289 (377)
T ss_dssp             BBCTTTHHHHHHHHHTTCCSEEE-------C-CBCSSCHHHHHHHHHHCSSCEEESGGGTTCCTHHHHHHHHHHCCSEEE
T ss_pred             CCCHHHHHHHHHHHhcCCCcEEE-------c-cCCcccHHHHHHHHhhCCCcEEECCccCCcchHHHHHHHHhCCCCEEE
Confidence            78888999999999999988762       1 22445899999999999999999888888888  77888767789887


Q ss_pred             ec
Q 020428          231 AA  232 (326)
Q Consensus       231 iG  232 (326)
                      +=
T Consensus       290 ik  291 (377)
T 2pge_A          290 LK  291 (377)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=97.65  E-value=0.00059  Score=61.45  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=94.1

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceeccc-ccccccccccccCcccccccCCccee---eecccCCC-CcEEEEE-CCC
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHK-LLKCERRVNEYIGSTDFVEKGTDSVV---FRTCHQER-NHVVFQM-GTS   85 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~p~~vQl-~g~   85 (326)
                      |.+.-|..+.+++.+.|++.+.+....... +.+      .+.....+     ..++   -......+ .++++-+ ||+
T Consensus        38 ~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~------~dt~~vTl-----demi~h~~aV~r~~~~~~vvaD~pfgs  106 (281)
T 1oy0_A           38 MLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGY------DTTVPISI-----DELIPLVRGVVRGAPHALVVADLPFGS  106 (281)
T ss_dssp             EEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCC------SSSSSCCG-----GGTHHHHHHHHHHCTTSEEEEECCTTS
T ss_pred             EEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCC------CCCCCCCH-----HHHHHHHHHHHhcCCCCeEEEECCCCc
Confidence            345669999999999999988775322211 111      00000000     0110   01111122 3455555 443


Q ss_pred             ---CHHHHHH-HHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--------
Q 020428           86 ---DAVRALT-AAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--------  152 (326)
Q Consensus        86 ---~~~~~~~-aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--------  152 (326)
                         ++++..+ +.+.+++ |+++|.|--|                   +...+.|+++.++ ++||..-+.+        
T Consensus       107 y~~s~~~a~~na~rl~~eaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~  166 (281)
T 1oy0_A          107 YEAGPTAALAAATRFLKDGGAHAVKLEGG-------------------ERVAEQIACLTAA-GIPVMAHIGFTPQSVNTL  166 (281)
T ss_dssp             STTCHHHHHHHHHHHHHTTCCSEEEEEBS-------------------GGGHHHHHHHHHH-TCCEEEEEECCC------
T ss_pred             ccCCHHHHHHHHHHHHHHhCCeEEEECCc-------------------HHHHHHHHHHHHC-CCCEEeeecCCcceeccc
Confidence               6777655 5666665 9999998643                   1344556666554 7887632222        


Q ss_pred             ------CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 ------LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 ------g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                            +.+  .++.++-|+.++++|++.|.+.+.        |  -+..++|.+.+++|+|+-|
T Consensus       167 ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v--------p--~~~a~~it~~l~iP~igIG  221 (281)
T 1oy0_A          167 GGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV--------P--AELATQITGKLTIPTVGIG  221 (281)
T ss_dssp             --------CHHHHHHHHHHHHHHHHTCSEEEEESC--------C--HHHHHHHHHHCSSCEEEES
T ss_pred             CCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecC--------C--HHHHHHHHHhCCCCEEEeC
Confidence                  122  256888899999999999999764        1  3678899999999999866

>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1

Probab=97.61  E-value=0.00064  Score=64.49  Aligned_cols=126  Identities=6%  Similarity=0.174  Sum_probs=94.5

Q ss_pred             EEEC-CCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh
Q 020428           80 FQMG-TSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS  156 (326)
Q Consensus        80 vQl~-g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~  156 (326)
                      ..++ +.+++++.+.++.+. +||..+.+..| |             ..+    .+.++++++++ ++.+.+-..-+|+.
T Consensus       154 ~~~g~~~~~e~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d----~~~v~avr~a~~~~~l~vDaN~~~~~  215 (393)
T 1wuf_A          154 VSIGLQQNVETLLQLVNQYVDQGYERVKLKIA-P-------------NKD----IQFVEAVRKSFPKLSLMADANSAYNR  215 (393)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHTCCEEEEECB-T-------------TBS----HHHHHHHHTTCTTSEEEEECTTCCCG
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHhhHhheeccC-h-------------HHH----HHHHHHHHHHcCCCEEEEECCCCCCH
Confidence            3444 346888877666554 49999998654 1             112    35577788776 45566666667888


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++ ++++.+++.++.+|-       |. ..+.|++..+++++.+++||.+.-.+.+..++.++++...+|.|++=
T Consensus       216 ~~a-~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik  282 (393)
T 1wuf_A          216 EDF-LLLKELDQYDLEMIE-------QP-FGTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLK  282 (393)
T ss_dssp             GGH-HHHHTTGGGTCSEEE-------CC-SCSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             HHH-HHHHHHHhCCCeEEE-------CC-CCCcCHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEeC
Confidence            888 999999999998874       22 34557899999999999999999999999999999976568988874

>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1

Probab=97.60  E-value=0.0016  Score=61.18  Aligned_cols=129  Identities=9%  Similarity=0.117  Sum_probs=99.5

Q ss_pred             EEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCC
Q 020428           80 FQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKS  155 (326)
Q Consensus        80 vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~  155 (326)
                      ..+. +..++.+.+.++.+.+ |+..+-+..|-               .+++.-.+.++++++.+  ++.+.+-..-+|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~g~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~  200 (370)
T 2chr_A          136 WTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDVNQAWD  200 (370)
T ss_dssp             EEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEECTTCCC
T ss_pred             eeeccCchhhhHHHHHHHHhhcccceeeccccc---------------CChHHHHHHHHHHHHhcCCCcEEEecCCCCCC
Confidence            3343 4456777888887776 88888876652               23555566788888877  4567777777899


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      .+++.++++.+++.++.+|       +| +..+-|++.++++++.+++||.+.=.+.|..++.++++...+|.+++
T Consensus       201 ~~~A~~~~~~l~~~~~~~i-------Ee-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~  268 (370)
T 2chr_A          201 EQVASVYIPELEALGVELI-------EQ-PVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSL  268 (370)
T ss_dssp             THHHHHHHHHHHTTTCCEE-------EC-CSCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEECC
T ss_pred             HHHHHHHHHHHHhcCCcee-------cC-CCChhhhhhhhHHhhhccCCccCCccCCCHHHHHHHHHcCCCcEEEe
Confidence            9999999999999999886       22 23455899999999999999999999999999999996555787765

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=97.59  E-value=0.00018  Score=62.63  Aligned_cols=148  Identities=11%  Similarity=0.119  Sum_probs=94.9

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc-----c------ccccccccccCChHHHHHHHHHH-----
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF-----S------VSGGMGAALLSKPELIHDILTML-----  138 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~-----~------~~~~~G~~l~~~p~~~~~iv~~v-----  138 (326)
                      .|++.=|-+.+++++.+.++.+.+ |++.|++..-.|...     .      .--++|. + -+.+.+...+++=     
T Consensus        16 ~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-v-i~~d~~~~A~~aGAd~v~   93 (214)
T 1wbh_A           16 GPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-V-LNPQQLAEVTEAGAQFAI   93 (214)
T ss_dssp             CSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-C-CSHHHHHHHHHHTCSCEE
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-E-EEHHHHHHHHHcCCCEEE
Confidence            367877888899888888887777 799999976544311     0      0113333 2 2333333222211     


Q ss_pred             -----------hhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc-CCcE
Q 020428          139 -----------KRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL-SIPV  205 (326)
Q Consensus       139 -----------~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~-~iPV  205 (326)
                                 +...+.|+..-+       .+.+.+..+.+.|+|+|-++.-       .+. -.+.++.++..+ ++|+
T Consensus        94 ~p~~d~~v~~~~~~~g~~~i~G~-------~t~~e~~~A~~~Gad~v~~Fpa-------~~~gG~~~lk~i~~~~~~ipv  159 (214)
T 1wbh_A           94 SPGLTEPLLKAATEGTIPLIPGI-------STVSELMLGMDYGLKEFKFFPA-------EANGGVKALQAIAGPFSQVRF  159 (214)
T ss_dssp             ESSCCHHHHHHHHHSSSCEEEEE-------SSHHHHHHHHHTTCCEEEETTT-------TTTTHHHHHHHHHTTCTTCEE
T ss_pred             cCCCCHHHHHHHHHhCCCEEEec-------CCHHHHHHHHHCCCCEEEEecC-------ccccCHHHHHHHhhhCCCCeE
Confidence                       111234443332       1233456667899999999651       111 267889999888 8999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      ++.|||+ ++.+.++++..|+++|. |+++...+.+
T Consensus       160 vaiGGI~-~~n~~~~l~agg~~~v~-gS~i~~~~~~  193 (214)
T 1wbh_A          160 CPTGGIS-PANYRDYLALKSVLCIG-GSWLVPADAL  193 (214)
T ss_dssp             EEBSSCC-TTTHHHHHTSTTBSCEE-EGGGSCHHHH
T ss_pred             EEECCCC-HHHHHHHHhcCCCeEEE-eccccChhhh
Confidence            9999995 68899999433999999 9988777665

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=97.58  E-value=0.00046  Score=63.28  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             HHHHHHHHhhcccCcEEEEecC-----C--CCh-HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--
Q 020428          131 IHDILTMLKRNLDVPVTCKIRL-----L--KSS-QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--  200 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~-----g--~~~-~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--  200 (326)
                      +.++.++.++ .++|+.+-+=.     +  .++ +...+.++.+.+.|+|++-++.-...     ..+++.+.++.+.  
T Consensus       144 i~~v~~~~~~-~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~~-----~g~~~~~~~vv~~~~  217 (304)
T 1to3_A          144 VKEFNELCHS-NGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYG-----KGARSDLLTASQRLN  217 (304)
T ss_dssp             HHHHHHHHHT-TTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGG-----CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcCC-----CCCHHHHHHHHHhcc
Confidence            3333333332 38888775522     2  223 44566689999999999988863211     1267887777777  


Q ss_pred             --cCCc-EEEeCCCCCH----HHHHHHHHhcCCcEEEeccchhcC
Q 020428          201 --LSIP-VIANGDVFEY----DDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       201 --~~iP-Vi~nGgI~s~----~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                        +++| |+..||+ +.    +.+..++ ..|++||.+||++...
T Consensus       218 ~~~~~P~Vv~aGG~-~~~~~~~~~~~a~-~aGa~Gv~vGRaI~q~  260 (304)
T 1to3_A          218 GHINMPWVILSSGV-DEKLFPRAVRVAM-EAGASGFLAGRAVWSS  260 (304)
T ss_dssp             HTCCSCEEECCTTS-CTTTHHHHHHHHH-HTTCCEEEESHHHHGG
T ss_pred             ccCCCCeEEEecCC-CHHHHHHHHHHHH-HcCCeEEEEehHHhCc
Confidence              8999 9999999 55    3466777 5799999999998866

>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A

Probab=97.58  E-value=0.0012  Score=62.09  Aligned_cols=116  Identities=15%  Similarity=0.180  Sum_probs=91.1

Q ss_pred             HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHc
Q 020428           92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKT  169 (326)
Q Consensus        92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~  169 (326)
                      ++.+...+||..+-+..|-                +++.-.+.++++|+++  ++.+.+-..-+|+..+++++++.+++.
T Consensus       151 ~~~~~~~~Gf~~~K~k~g~----------------~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~  214 (378)
T 4hpn_A          151 EMAERRAEGFHACKIKIGF----------------GVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGF  214 (378)
T ss_dssp             HHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHhccceecccccC----------------ChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhc
Confidence            3444455699988886541                3555567788888887  567777777789999999999999999


Q ss_pred             CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          170 GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+|-        .+..+.|++..+++++.+++||.+.-.+.|..++.++++...+|.+++
T Consensus       215 ~i~~iE--------eP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~  268 (378)
T 4hpn_A          215 GIDWFE--------EPVVPEQLDAYARVRAGQPIPVAGGETWHGRYGMWQALSAGAVDILQP  268 (378)
T ss_dssp             CCSCEE--------CCSCTTCHHHHHHHHHHSSSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             ccchhh--------cCCCccchhhhHHHHhhCCceeeCCcCccchHhHHHHHHcCCCCEEee
Confidence            988762        223455899999999999999999999999999999997666787754

>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}

Probab=97.55  E-value=0.001  Score=63.18  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             EEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChH
Q 020428           80 FQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQ  157 (326)
Q Consensus        80 vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~  157 (326)
                      ..+...+++++.+.++... +||..+-+..|.+.+..       .-...++.-.+.++++|+++ +..+.+-..-+|+..
T Consensus       159 ~t~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~-------~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w~~~  231 (393)
T 3u9i_A          159 VTITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA-------TTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAP  231 (393)
T ss_dssp             EEEC---CHHHHHHHHHHHTTTCCEEEEECC--------------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCCCHH
T ss_pred             EEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccc-------cccccHHHHHHHHHHHHHHCCCCeEEEEccCCCCHH
Confidence            3455567888877776654 49999999887543210       00112455666788888876 455666666679999


Q ss_pred             HHHHHHHHH--HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          158 DTVELARRI--EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       158 ~~~e~a~~l--~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++++++.+  ++.++.+|       +| +..+.|++..+++++.+++||.+.=.+.|..++.++++...+|.|++=
T Consensus       232 ~A~~~~~~L~~~~~~i~~i-------Ee-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~~k  300 (393)
T 3u9i_A          232 DALRLLDMLGVHGIVPALF-------EQ-PVAKDDEEGLRRLTATRRVPVAADESVASATDAARLARNAAVDVLNIK  300 (393)
T ss_dssp             HHHHHHHTTTTTTCCCSEE-------EC-CSCTTCTTHHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHHHHHhhCCCCeEEE-------EC-CCCCCcHHHHHHHHhhCCCcEEeCCcCCCHHHHHHHHHcCCCCEEEec
Confidence            999999999  77777776       12 223457888999999999999999899999999999976668888764

>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}

Probab=97.55  E-value=0.00083  Score=63.66  Aligned_cols=131  Identities=14%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             EEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh
Q 020428           79 VFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS  156 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~  156 (326)
                      ...+...+++++.+.++... .||..+-+..|..               +++.-.+.++++|+++ +..+.+-..-+|+.
T Consensus       137 ~~t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~~---------------~~~~d~~~v~avR~~~~~~~L~vDaN~~w~~  201 (389)
T 3s5s_A          137 DITITTGSPERAEEAARRAAAMGFRALKVKVGGR---------------LAASDPARIEAIHAAAPGASLILDGNGGLTA  201 (389)
T ss_dssp             CEEECSSCSHHHHHHHHHHHHHTCCEEEEECCGG---------------GTTTHHHHHHHHHHHCTTCEEEEECTTCSCH
T ss_pred             EeeecCCCHHHHHHHHHHHHHcCCCeEEEEecCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCH
Confidence            34556677888877776654 4999999876532               1333445677777766 44566666667999


Q ss_pred             HHHHHHHHHH--HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRI--EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l--~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++++++.+  ++.++.+|       +| +..+.|++..+++++.+++||.+.=.+.+..++.++++...+|.|++-
T Consensus       202 ~~A~~~~~~L~~~~~~i~~i-------Ee-P~~~~d~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k  271 (389)
T 3s5s_A          202 GEALALVAHARRLGADVALL-------EQ-PVPRDDWDGMKEVTRRAGVDVAADESAASAEDVLRVAAERAATVVNIK  271 (389)
T ss_dssp             HHHHHHHHHHHHTTCEEEEE-------EC-CSCTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHHHHHHhhCCCCeEEE-------EC-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEec
Confidence            9999999999  55555444       12 234558999999999999999999899999999999976668888774

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=97.51  E-value=0.00068  Score=59.10  Aligned_cols=102  Identities=12%  Similarity=0.166  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCC-----CCcCCHHH-HHHHHHhc-C
Q 020428          130 LIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP-----RDPAKWGE-IADIVAAL-S  202 (326)
Q Consensus       130 ~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~-----~~~~~~~~-i~~i~~~~-~  202 (326)
                      .+.+.++..++. ++.+.+-+.  ...+     .+.+.+.|.+.|-++.+..-+..     ..+.+.+. .+.+++.. +
T Consensus        99 e~~~~~~~a~~~-Gl~~iv~v~--~~~e-----~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~  170 (219)
T 2h6r_A           99 DIEAVINKCKNL-GLETIVCTN--NINT-----SKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKD  170 (219)
T ss_dssp             HHHHHHHHHHHH-TCEEEEEES--SSHH-----HHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHC-CCeEEEEeC--CchH-----HHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCC
Confidence            466677766554 665555553  2221     34556678899989887642111     11211333 34444444 7


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +||++.|||.+++++..+. ..|+|||.||++++.-++
T Consensus       171 ~~ii~ggGI~~~~~~~~~~-~~gaDgvlVGsAi~~~~d  207 (219)
T 2h6r_A          171 VKVLCGAGISKGEDVKAAL-DLGAEGVLLASGVVKAKN  207 (219)
T ss_dssp             CEEEECSSCCSHHHHHHHH-TTTCCCEEESHHHHTCSS
T ss_pred             CeEEEEeCcCcHHHHHHHh-hCCCCEEEEcHHHhCccc
Confidence            9999999999999999988 689999999999887544

>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A

Probab=97.47  E-value=0.0015  Score=62.39  Aligned_cols=123  Identities=12%  Similarity=0.192  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+++++.+.++...+ ||..+-+..|..                ++...+.++++|+++  ++.+.+-..-+|+..++++
T Consensus       187 ~~~~~~~~~a~~~~~~G~~~~K~k~g~~----------------~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~  250 (412)
T 4h1z_A          187 DTRAKRAELAAAWQAKGFSSFKFASPVA----------------DDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVA  250 (412)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEEGGGC----------------TTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCcceeccccccc----------------hhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHHH
Confidence            457777777666554 999988854321                122344567777776  5667777777899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +++.+++.|+.+|       +| +..+.|++..+++++.+++||.+.=.+.|..|+.++++...+|.+++
T Consensus       251 ~~~~l~~~~l~~i-------Eq-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~  312 (412)
T 4h1z_A          251 LIKAMEPHGLWFA-------EA-PVRTEDIDGLARVAASVSTAIAVGEEWRTVHDMVPRVARRALAIVQP  312 (412)
T ss_dssp             HHHHHGGGCEEEE-------EC-CSCTTCHHHHHHHHHHCSSEEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHhhccccccee-------cC-CCCccchHHHHHHHhhcCCccccCCcccchHhHHHHHHcCCCCEEEe
Confidence            9999999998776       22 23455899999999999999999999999999999996555676654

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=97.46  E-value=0.00065  Score=63.75  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=73.7

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      .++...+.++.+++....|+.+-+....     .+.++.+.++|+|.|+++.-.   .. .....+.++++++.+++||+
T Consensus        79 s~e~~~~~I~~vk~~~~~pvga~ig~~~-----~e~a~~l~eaGad~I~ld~a~---G~-~~~~~~~i~~i~~~~~~~Vi  149 (361)
T 3khj_A           79 DMESQVNEVLKVKNSGGLRVGAAIGVNE-----IERAKLLVEAGVDVIVLDSAH---GH-SLNIIRTLKEIKSKMNIDVI  149 (361)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEECTTC-----HHHHHHHHHTTCSEEEECCSC---CS-BHHHHHHHHHHHHHCCCEEE
T ss_pred             CHHHHHHHHHHHHhccCceEEEEeCCCH-----HHHHHHHHHcCcCeEEEeCCC---CC-cHHHHHHHHHHHHhcCCcEE
Confidence            5777888899998877888888875432     678899999999999986321   00 11124678888888899998


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      + |++.|+++++.+. +.|||+|.+|
T Consensus       150 v-g~v~t~e~A~~l~-~aGaD~I~VG  173 (361)
T 3khj_A          150 V-GNVVTEEATKELI-ENGADGIKVG  173 (361)
T ss_dssp             E-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred             E-ccCCCHHHHHHHH-HcCcCEEEEe
Confidence            7 6789999999998 6999999996

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=97.42  E-value=0.00083  Score=61.23  Aligned_cols=91  Identities=9%  Similarity=0.133  Sum_probs=66.2

Q ss_pred             HHHHHHHHhhcccC-cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEE
Q 020428          131 IHDILTMLKRNLDV-PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIA  207 (326)
Q Consensus       131 ~~~iv~~v~~~~~~-pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~  207 (326)
                      +.+-++++++..+. ++.+-+.       +.+.++.+.++|+|+|-++.          .+.+.++++++.+  ++||.+
T Consensus       195 i~~ai~~~r~~~~~~kI~vev~-------tlee~~eA~~aGaD~I~ld~----------~~~e~l~~~v~~~~~~~~I~A  257 (296)
T 1qap_A          195 VRQAVEKAFWLHPDVPVEVEVE-------NLDELDDALKAGADIIMLDN----------FNTDQMREAVKRVNGQARLEV  257 (296)
T ss_dssp             HHHHHHHHHHHSTTSCEEEEES-------SHHHHHHHHHTTCSEEEESS----------CCHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHHHhCCCCcEEEEeC-------CHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEE
Confidence            45566666666532 5555442       12445555688999998874          3567777777766  699999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +||| |.+.+.++. .+|+|++.+|+....-|+
T Consensus       258 SGGI-t~~~i~~~a-~~GvD~isvGsli~~a~~  288 (296)
T 1qap_A          258 SGNV-TAETLREFA-ETGVDFISVGALTKHVRA  288 (296)
T ss_dssp             CCCS-CHHHHHHHH-HTTCSEEECSHHHHEEEC
T ss_pred             ECCC-CHHHHHHHH-HcCCCEEEEeHHHcCCCC
Confidence            9999 999999999 699999999996555554

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=97.41  E-value=0.00096  Score=58.89  Aligned_cols=132  Identities=6%  Similarity=0.036  Sum_probs=85.8

Q ss_pred             EEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--------cCcEEEEe
Q 020428           79 VFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--------DVPVTCKI  150 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--------~~pv~vK~  150 (326)
                      -+-|..++|+.+.+.+..  .|+|+|-+|.+..                 +.+.+.++.+++..        +..+.+-+
T Consensus        73 DvhLMv~~p~~~i~~~~~--aGAd~itvH~ea~-----------------~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l  133 (237)
T 3cu2_A           73 DVHLMVRNQLEVAKAVVA--NGANLVTLQLEQY-----------------HDFALTIEWLAKQKTTYANQVYPVLIGACL  133 (237)
T ss_dssp             EEEEECSCHHHHHHHHHH--TTCSEEEEETTCT-----------------TSHHHHHHHHTTCEEEETTEEEECEEEEEE
T ss_pred             CeEEEEECHHHHHHHHHH--cCCCEEEEecCCc-----------------ccHHHHHHHHHhcccccccccCCceEEEEE
Confidence            566777899887776543  3899999987532                 12345677776541        33344444


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEE---eecccCCCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHH
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAV---HGRKVADRPRDPAKWGEIADIVAAL-----SIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~v---h~r~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d~~~~l~  222 (326)
                      ...    +..+.++.+. .++|.|.+   +.....|.. .+...+.++++++..     ++||.+-|||+ .+.+..+. 
T Consensus       134 ~p~----Tp~~~l~~~l-~~~D~vlvMsv~pgfggq~f-~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~-  205 (237)
T 3cu2_A          134 CPE----TPISELEPYL-DQIDVIQLLTLDPRNGTKYP-SELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFK-  205 (237)
T ss_dssp             CTT----SCGGGGTTTT-TTCSEEEEESEETTTTEECC-HHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHH-
T ss_pred             eCC----ChHHHHHHHh-hcCceeeeeeeccCcCCeec-ChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH-
Confidence            322    2222222222 27999865   555444433 333466677777665     69999999997 78888888 


Q ss_pred             h--cCCcEEEeccchhc
Q 020428          223 A--AGASSVMAARGALW  237 (326)
Q Consensus       223 ~--~Gad~VmiGr~~l~  237 (326)
                      .  .|||++.+||+++.
T Consensus       206 ~~~aGad~~VvGSaIf~  222 (237)
T 3cu2_A          206 QGTHQIDWLVSGSALFS  222 (237)
T ss_dssp             HSSSCCCCEEECGGGGS
T ss_pred             HhCCCCcEEEEeeHHhC
Confidence            8  89999999999665

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=97.39  E-value=0.0017  Score=57.88  Aligned_cols=96  Identities=20%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             HHHHhhcccCcEEEEecC-----CC--ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          135 LTMLKRNLDVPVTCKIRL-----LK--SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       135 v~~v~~~~~~pv~vK~r~-----g~--~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      .+++++. +.+|..-+..     |+  . .+..++|+.++++|+++|+|-.  -...+.  ...+.+..+++.+++||+.
T Consensus        38 ~~al~~~-~~~~IaE~k~aSPskg~i~~-~~p~~~A~~~~~~GA~~isvlt--~~~~f~--G~~~~l~~i~~~v~lPvl~  111 (254)
T 1vc4_A           38 KEALLRP-GLSVIAEVKRQSPSEGLIRE-VDPVEAALAYARGGARAVSVLT--EPHRFG--GSLLDLKRVREAVDLPLLR  111 (254)
T ss_dssp             HHHHTSS-SCEEEEEECSCCTTTCCCCS-CCHHHHHHHHHHTTCSEEEEEC--CCSSSC--CCHHHHHHHHHHCCSCEEE
T ss_pred             HHHHhhc-CCcEEeeecCCCcCCCcCCC-CCHHHHHHHHHHcCCCEEEEec--chhhhc--cCHHHHHHHHHhcCCCEEE
Confidence            3444433 5666654432     32  3 5789999999999999998832  222222  2467888999999999999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      -+.|.+..++..++ ..|||+|.++...+.
T Consensus       112 kdfI~d~~qi~~a~-~~GAD~VlL~~~~l~  140 (254)
T 1vc4_A          112 KDFVVDPFMLEEAR-AFGASAALLIVALLG  140 (254)
T ss_dssp             ESCCCSHHHHHHHH-HTTCSEEEEEHHHHG
T ss_pred             CCcCCCHHHHHHHH-HcCCCEEEECccchH
Confidence            99999999999888 699999999999887

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=97.38  E-value=0.0018  Score=57.75  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=96.8

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceeccc-ccccccccccccCcccccccCCccee---eeccc-CCCCcEEEEE-CCC
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHK-LLKCERRVNEYIGSTDFVEKGTDSVV---FRTCH-QERNHVVFQM-GTS   85 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~p~~vQl-~g~   85 (326)
                      |.+.-|..+.+++.+.|++.++++-..... +.+      .+.....+     ..++   -.... ....++++-+ ||+
T Consensus        21 ~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~------~dt~~vtl-----demi~h~~aV~r~~~~~~vvaD~pfgs   89 (264)
T 1m3u_A           21 TITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGH------DSTLPVTV-----ADIAYHTAAVRRGAPNCLLLADLPFMA   89 (264)
T ss_dssp             EEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCC------SSSTTCCH-----HHHHHHHHHHHHHCTTSEEEEECCTTS
T ss_pred             EEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCC------CCCCCcCH-----HHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence            346669999999999999999886322211 111      00000000     0100   00111 1223566666 332


Q ss_pred             --CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----------
Q 020428           86 --DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL----------  152 (326)
Q Consensus        86 --~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~----------  152 (326)
                        ++++..+.+.++.+ |+++|.|--|                   +...+.|+++.++ ++||.--+.+          
T Consensus        90 y~~~~~a~~~a~rl~kaGa~aVklEgg-------------------~e~~~~I~al~~a-gipV~gHiGLtPq~v~~~gg  149 (264)
T 1m3u_A           90 YATPEQAFENAATVMRAGANMVKIEGG-------------------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGG  149 (264)
T ss_dssp             SSSHHHHHHHHHHHHHTTCSEEECCCS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTS
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEECCc-------------------HHHHHHHHHHHHC-CCCeEeeecCCceeecccCC
Confidence              67777776666655 9999998643                   2345556666554 7888733222          


Q ss_pred             ----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 ----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 ----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                          +.+.   ++.++-|+.++++|++.|.+.+.        |  -+..++|.+.+++|+|+-|
T Consensus       150 f~v~grt~~~a~~~i~rA~a~~eAGA~~ivlE~v--------p--~~~a~~it~~l~iP~igIG  203 (264)
T 1m3u_A          150 YKVQGRGDEAGDQLLSDALALEAAGAQLLVLECV--------P--VELAKRITEALAIPVIGIG  203 (264)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEESC--------C--HHHHHHHHHHCSSCEEEES
T ss_pred             eEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEecC--------C--HHHHHHHHHhCCCCEEEeC
Confidence                2232   46888899999999999999764        1  3678899999999999866

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=97.38  E-value=0.00097  Score=61.92  Aligned_cols=97  Identities=13%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC--CcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG--VSALAVHGRKVADRPRDPAKWGEIADIVAALSIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G--~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP  204 (326)
                      +++...++++.+++. +.|+++.+  +... +..+.++.+.++|  ++.|.++..   +. .....|+.++++++.++.|
T Consensus        79 ~~~~~~~~i~~~~~~-g~~v~v~~--g~~~-~~~~~a~~~~~~g~~~~~i~i~~~---~G-~~~~~~~~i~~lr~~~~~~  150 (336)
T 1ypf_A           79 QPEKRISFIRDMQSR-GLIASISV--GVKE-DEYEFVQQLAAEHLTPEYITIDIA---HG-HSNAVINMIQHIKKHLPES  150 (336)
T ss_dssp             SGGGHHHHHHHHHHT-TCCCEEEE--CCSH-HHHHHHHHHHHTTCCCSEEEEECS---SC-CSHHHHHHHHHHHHHCTTS
T ss_pred             CCHHHHHHHHHHHhc-CCeEEEeC--CCCH-HHHHHHHHHHhcCCCCCEEEEECC---CC-CcHHHHHHHHHHHHhCCCC
Confidence            344556667776653 66788774  4443 3556788899999  999988642   11 2234688999999998756


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++..|.|.|.++++.+. +.|||+|.++
T Consensus       151 ~vi~G~v~s~e~A~~a~-~aGad~Ivvs  177 (336)
T 1ypf_A          151 FVIAGNVGTPEAVRELE-NAGADATKVG  177 (336)
T ss_dssp             EEEEEEECSHHHHHHHH-HHTCSEEEEC
T ss_pred             EEEECCcCCHHHHHHHH-HcCCCEEEEe
Confidence            66667799999999999 6999999994

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=97.37  E-value=0.00057  Score=61.68  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCc
Q 020428          132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIP  204 (326)
Q Consensus       132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iP  204 (326)
                      .+-++++++..+  .++.+-+.   +    .+.++.+.++|+|+|-++..          +.+.++++++.+     ++|
T Consensus       169 ~~ai~~~r~~~~~~~~i~vev~---t----lee~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~~~~  231 (273)
T 2b7n_A          169 KSFLTHARKNLPFTAKIEIECE---S----FEEAKNAMNAGADIVMCDNL----------SVLETKEIAAYRDAHYPFVL  231 (273)
T ss_dssp             HHHHHHHGGGSCTTCCEEEEES---S----HHHHHHHHHHTCSEEEEETC----------CHHHHHHHHHHHHHHCTTCE
T ss_pred             HHHHHHHHHhCCCCceEEEEcC---C----HHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCcE
Confidence            455667776653  35565442   1    23345555689999998752          245555554443     399


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      |.++||| |++.+.++. .+|+|++.+|+.....|++
T Consensus       232 i~AsGGI-~~~ni~~~~-~aGaD~i~vGs~i~~a~~~  266 (273)
T 2b7n_A          232 LEASGNI-SLESINAYA-KSGVDAISVGALIHQATFI  266 (273)
T ss_dssp             EEEESSC-CTTTHHHHH-TTTCSEEECTHHHHTCCCC
T ss_pred             EEEECCC-CHHHHHHHH-HcCCcEEEEcHHhcCCCCC
Confidence            9999999 899999999 6999999999987765653

>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A

Probab=97.35  E-value=0.0048  Score=57.06  Aligned_cols=125  Identities=11%  Similarity=0.141  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+++++.+.++. +..|+..+.+..|.               .+++.-.+.++++|+.+  ++.+.+-..-+|+.+++++
T Consensus       115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~  179 (332)
T 2ozt_A          115 GSGQAALEQWQQSWQRGQTTFKWKVGV---------------MSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANR  179 (332)
T ss_dssp             CTGGGHHHHHHHHHHTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCCcEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHH
Confidence            456666555554 44599998887652               23555667788898887  3566666666799999999


Q ss_pred             HHHHHHHc---CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          162 LARRIEKT---GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       162 ~a~~l~~~---G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++.+++.   ++.+|       +|. ..+.|++..+++++.+++||.+.=.+.+..++.++++...+|.+++=
T Consensus       180 ~~~~l~~~~~~~i~~i-------EqP-~~~~d~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik  245 (332)
T 2ozt_A          180 WFAWLDRHGNGKIEYV-------EQP-LPPDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRGWPGFFVIK  245 (332)
T ss_dssp             HHHHHHHHCCTTEEEE-------ECC-SCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHHhhccCCccee-------ECC-CCCCCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEC
Confidence            99999998   66654       222 23558999999999999999999899999999999954345766653

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=97.33  E-value=0.00016  Score=63.43  Aligned_cols=147  Identities=11%  Similarity=0.114  Sum_probs=90.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccc--c--cc-------ccccccccCChHHHHHHHHHH------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSF--S--VS-------GGMGAALLSKPELIHDILTML------  138 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~--~--~~-------~~~G~~l~~~p~~~~~iv~~v------  138 (326)
                      |++.=+-+.+++++.+.++.+.+ |++.|++-+-.|...  +  .+       -++|. ++ +.+.+...+.+=      
T Consensus        27 ~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagt-vl-~~d~~~~A~~aGAd~v~~  104 (225)
T 1mxs_A           27 RILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGT-VL-DRSMFAAVEAAGAQFVVT  104 (225)
T ss_dssp             SEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEEC-CC-SHHHHHHHHHHTCSSEEC
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCe-Ee-eHHHHHHHHHCCCCEEEe
Confidence            56666677788888777777766 788888865433210  0  01       12343 22 333333322211      


Q ss_pred             ----------hhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc-CCcEE
Q 020428          139 ----------KRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL-SIPVI  206 (326)
Q Consensus       139 ----------~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~-~iPVi  206 (326)
                                +...++|+..-+       .+.+.+..+.+.|+|+|-++.-       .+. -.+.++.++..+ ++|++
T Consensus       105 p~~d~~v~~~~~~~g~~~i~G~-------~t~~e~~~A~~~Gad~vk~FPa-------~~~~G~~~lk~i~~~~~~ipvv  170 (225)
T 1mxs_A          105 PGITEDILEAGVDSEIPLLPGI-------STPSEIMMGYALGYRRFKLFPA-------EISGGVAAIKAFGGPFGDIRFC  170 (225)
T ss_dssp             SSCCHHHHHHHHHCSSCEECEE-------CSHHHHHHHHTTTCCEEEETTH-------HHHTHHHHHHHHHTTTTTCEEE
T ss_pred             CCCCHHHHHHHHHhCCCEEEee-------CCHHHHHHHHHCCCCEEEEccC-------ccccCHHHHHHHHhhCCCCeEE
Confidence                      111233333222       1123356667889999988541       111 257788888877 89999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +.||| +++.+.++++..|+++|. |+++...+.+
T Consensus       171 aiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~~~i  203 (225)
T 1mxs_A          171 PTGGV-NPANVRNYMALPNVMCVG-TTWMLDSSWI  203 (225)
T ss_dssp             EBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCHHHH
T ss_pred             EECCC-CHHHHHHHHhccCCEEEE-EchhcCchhh
Confidence            99999 478899999447999999 9998776655

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=97.32  E-value=0.0032  Score=57.55  Aligned_cols=204  Identities=13%  Similarity=0.069  Sum_probs=118.3

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEe-Cceeccc-ccccccccccccCcccccccCCcceeeecccCC--CCcEEEE
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYG-EEIIDHK-LLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE--RNHVVFQ   81 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~t-e~i~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~vQ   81 (326)
                      +.+..|  +.-|..+.+++.+.|.+.+++ ....+.. +.+      .+.+...+.+.  ....-......  ..|+++-
T Consensus        25 ~~i~~~--~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~------pD~~~vt~~em--~~~~~~i~r~~~~~~PviaD   94 (307)
T 3lye_A           25 ELIVCP--GVYDGLSARTAMELGFKSLYMTGAGTTASRLGQ------PDLAIAQLHDM--RDNADMIANLDPFGPPLIAD   94 (307)
T ss_dssp             CCEEEE--EECSHHHHHHHHHTTCSCEEECHHHHHHHHHCC------CSSSCSCHHHH--HHHHHHHHTSSTTSCCEEEE
T ss_pred             CeEEEe--cCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCC------CCCCCCCHHHH--HHHHHhhhccCCCCCcEEEE
Confidence            344544  666999999999999987764 4222211 111      11111100000  00000111111  3689988


Q ss_pred             E-CC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCC--
Q 020428           82 M-GT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLL--  153 (326)
Q Consensus        82 l-~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g--  153 (326)
                      + +| .+++...+.++.+.+ |+.+|.|--+.. ++.+..-.|..+. ..+...+-+++.+++.   +.++.+--|..  
T Consensus        95 ~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~-~k~cgh~~gk~l~-~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~  172 (307)
T 3lye_A           95 MDTGYGGPIMVARTVEHYIRSGVAGAHLEDQIL-TKRCGHLSGKKVV-SRDEYLVRIRAAVATKRRLRSDFVLIARTDAL  172 (307)
T ss_dssp             CTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCC-CC--------CBC-CHHHHHHHHHHHHHHHHHTTCCCEEEEEECCH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCC-CcccCCCCCCeec-CHHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence            8 33 358888888888776 999999976542 2222221233344 4444444444554432   56676666653  


Q ss_pred             --CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEe---CC---CCCHHHHHHHHHhc
Q 020428          154 --KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIAN---GD---VFEYDDFQRIKTAA  224 (326)
Q Consensus       154 --~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~n---Gg---I~s~~d~~~~l~~~  224 (326)
                        ...+++++-++.+.++|+|.|-+++.         .+.+.++++.+.++ +||.+|   ||   ..|.+   ++- +.
T Consensus       173 ~~~gldeAi~Ra~ay~eAGAD~ifi~~~---------~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~---eL~-~l  239 (307)
T 3lye_A          173 QSLGYEECIERLRAARDEGADVGLLEGF---------RSKEQAAAAVAALAPWPLLLNSVENGHSPLITVE---EAK-AM  239 (307)
T ss_dssp             HHHCHHHHHHHHHHHHHTTCSEEEECCC---------SCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHH---HHH-HH
T ss_pred             hccCHHHHHHHHHHHHHCCCCEEEecCC---------CCHHHHHHHHHHccCCceeEEeecCCCCCCCCHH---HHH-Hc
Confidence              23568999999999999999999864         25678889998885 898765   33   23444   344 57


Q ss_pred             CCcEEEeccc
Q 020428          225 GASSVMAARG  234 (326)
Q Consensus       225 Gad~VmiGr~  234 (326)
                      |+..|..+-.
T Consensus       240 Gv~~v~~~~~  249 (307)
T 3lye_A          240 GFRIMIFSFA  249 (307)
T ss_dssp             TCSEEEEETT
T ss_pred             CCeEEEEChH
Confidence            9988877644

>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A

Probab=97.31  E-value=0.0017  Score=61.56  Aligned_cols=125  Identities=12%  Similarity=0.071  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+++.+.+.++.+.+ ||..+-+..|-+               +++.-.+.++++|+++  ++.+.+-...+|+..++++
T Consensus       163 ~~~~~~~~~~~~~~~~G~~~~Kikvg~~---------------~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~  227 (388)
T 4h83_A          163 EPLGSIADEMHNYQELGLAGVKFKVGGL---------------SAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVD  227 (388)
T ss_dssp             CTTCSHHHHHHHHHHHTBSEEEEECSSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCceEeecCCCC---------------CHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHH
Confidence            345666666666555 999998876422               3444456678888877  5677777777899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +++.+++.++.+|-       |......+++..+++++.+++||.+.=.+.|..++.++++...+|.|++
T Consensus       228 ~~~~l~~~~~~~iE-------eP~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~  290 (388)
T 4h83_A          228 LSRRIADLNIRWFE-------EPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNF  290 (388)
T ss_dssp             HHHHTTTSCCCCEE-------SCBCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHTCCSEECC
T ss_pred             HHHHhhhcCcceee-------cCcccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcCCCCeEee
Confidence            99999999988762       2211123577889999999999999999999999999997656787755

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=97.29  E-value=0.0023  Score=58.83  Aligned_cols=121  Identities=12%  Similarity=0.081  Sum_probs=86.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. . +..++++
T Consensus        30 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg-~-~t~~ai~   97 (316)
T 3e96_A           30 IDWHHYKETVDRIVDNGIDVIVPCG----------NTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG-Y-ATSTAIE   97 (316)
T ss_dssp             BCHHHHHHHHHHHHTTTCCEECTTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-S-SHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC-c-CHHHHHH
Confidence            477888888887765 999987763          234444445666677777776665  589999885 3 8899999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-GgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+++++||+ +| |--.+++.+.++.
T Consensus        98 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La  158 (316)
T 3e96_A           98 LGNAAKAAGADAVMIHMP----IHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLA  158 (316)
T ss_dssp             HHHHHHHHTCSEEEECCC----CCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence            999999999999987532    222222   24566788888899986 77 6556677777665

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=97.27  E-value=0.0015  Score=58.31  Aligned_cols=194  Identities=12%  Similarity=0.050  Sum_probs=117.1

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCce-ecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-C--CCCH
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEI-IDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-G--TSDA   87 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-~--g~~~   87 (326)
                      |.+.-|..+.+++.+.|++.+++.-- .+..+.+      .+.....+-+.  ....-..+...+.|+++-+ +  |+++
T Consensus        24 ~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~------pD~~~vt~~em--~~~~~~I~r~~~~pviaD~~~Gyg~~~   95 (255)
T 2qiw_A           24 LPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGS------SDGENMNFADY--MAVVKKITSAVSIPVSVDVESGYGLSP   95 (255)
T ss_dssp             CCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTC------CTTTCSCHHHH--HHHHHHHHHHCSSCEEEECTTCTTCCH
T ss_pred             EecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCC------CCCCCcCHHHH--HHHHHHHHhcCCCCEEeccCCCcCcHH
Confidence            34667999999999999988876621 1112211      11111100000  0000011112236899888 3  4455


Q ss_pred             HHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCC-----CC---
Q 020428           88 VRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLL-----KS---  155 (326)
Q Consensus        88 ~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g-----~~---  155 (326)
                         .+.++.+.+ |+++|.|--+...       .|. -+-..+...+-|++++++.   ++|+.|--|.+     .+   
T Consensus        96 ---~~~~~~l~~aGa~gv~iEd~~~~-------~~k-~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~  164 (255)
T 2qiw_A           96 ---ADLIAQILEAGAVGINVEDVVHS-------EGK-RVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFE  164 (255)
T ss_dssp             ---HHHHHHHHHTTCCEEEECSEEGG-------GTT-EECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSS
T ss_pred             ---HHHHHHHHHcCCcEEEECCCCCC-------CCC-cccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcch
Confidence               555555444 9999999755311       122 2335566667777776653   67866666643     22   


Q ss_pred             --hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe--CCCCCH-HHHHHHHHhcCCcEEE
Q 020428          156 --SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN--GDVFEY-DDFQRIKTAAGASSVM  230 (326)
Q Consensus       156 --~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n--GgI~s~-~d~~~~l~~~Gad~Vm  230 (326)
                        .+++++-++.++++|+|.|.+++.         .+.+.++++.+.+++|+-.+  ++-.|+ -+..++- +.|+..|.
T Consensus       165 ~~~~~ai~ra~a~~eAGAd~i~~e~~---------~~~~~~~~i~~~~~~P~n~~~~~~~~~p~~~~~eL~-~lGv~~v~  234 (255)
T 2qiw_A          165 DPMVEAIKRIKLMEQAGARSVYPVGL---------STAEQVERLVDAVSVPVNITAHPVDGHGAGDLATLA-GLGVRRVT  234 (255)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEECCC---------CSHHHHHHHHTTCSSCBEEECBTTTBBTTBCHHHHH-HTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEcCC---------CCHHHHHHHHHhCCCCEEEEecCCCCCCCCCHHHHH-HcCCCEEE
Confidence              467899999999999999999764         35688999999999998766  333111 1233444 68999999


Q ss_pred             eccc
Q 020428          231 AARG  234 (326)
Q Consensus       231 iGr~  234 (326)
                      .|-.
T Consensus       235 ~~~~  238 (255)
T 2qiw_A          235 FGPL  238 (255)
T ss_dssp             CTTH
T ss_pred             EHHH
Confidence            8865

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=97.23  E-value=0.0073  Score=52.16  Aligned_cols=136  Identities=13%  Similarity=0.054  Sum_probs=85.1

Q ss_pred             cEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           77 HVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      ++++-+ .+..|+.+.+.  .+..|+|.|-+|....                .+.+.++++.+++. +.++.+++-...+
T Consensus        58 ~v~lD~kl~dip~t~~~~--~~~~Gad~itvh~~~g----------------~~~l~~~~~~~~~~-g~~~~~~ll~~~t  118 (216)
T 1q6o_A           58 IVLADAKIADAGKILSRM--CFEANADWVTVICCAD----------------INTAKGALDVAKEF-NGDVQIELTGYWT  118 (216)
T ss_dssp             EEEEEEEECSCHHHHHHH--HHHTTCSEEEEETTSC----------------HHHHHHHHHHHHHT-TCEEEEEECSCCC
T ss_pred             eEEEEEEecccHHHHHHH--HHhCCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCCceeeeeeCCC
Confidence            455443 23457777662  2334999999986321                23355666666653 6776665531333


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEee-c-ccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          156 SQDTVELARRIEKTGVSALAVHG-R-KVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~-r-~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                       .+   -++.+++.|.+.+.+|- + +...+..+  ..+.++.+++..  ++||++.|||+ ++.+.+++ +.|||++.+
T Consensus       119 -~~---~~~~l~~~~~~~~vl~~a~~~~~~G~~g--~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~-~aGad~ivv  190 (216)
T 1q6o_A          119 -WE---QAQQWRDAGIGQVVYHRSRDAQAAGVAW--GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFK-GIPIHVFIA  190 (216)
T ss_dssp             -HH---HHHHHHHTTCCEEEEECCHHHHHTTCCC--CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGT-TSCCSEEEE
T ss_pred             -hh---hHHHHHhcCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHH-HcCCCEEEE
Confidence             22   23455566887777752 2 11122222  356667777655  68899999998 78888888 689999999


Q ss_pred             ccchhcCc
Q 020428          232 ARGALWNA  239 (326)
Q Consensus       232 Gr~~l~~P  239 (326)
                      ||+++..+
T Consensus       191 G~~I~~a~  198 (216)
T 1q6o_A          191 GRSIRDAA  198 (216)
T ss_dssp             SHHHHTSS
T ss_pred             eehhcCCC
Confidence            99987643

>3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1}

Probab=97.21  E-value=0.0055  Score=57.96  Aligned_cols=129  Identities=12%  Similarity=0.229  Sum_probs=95.6

Q ss_pred             cEEEEECCCC-HHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC
Q 020428           77 HVVFQMGTSD-AVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~-~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g  153 (326)
                      |+-..++..+ ++++.+.++... +||..+-+..| |             ..+.    +.++++|+.+ ++.+.+-..-+
T Consensus       139 ~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~-~-------------~~d~----~~v~avR~~~~~~~l~vDaN~~  200 (388)
T 3qld_A          139 EVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIA-P-------------GRDR----AAIKAVRLRYPDLAIAADANGS  200 (388)
T ss_dssp             EBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECB-T-------------TBSH----HHHHHHHHHCTTSEEEEECTTC
T ss_pred             EEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC-c-------------HHHH----HHHHHHHHHCCCCeEEEECCCC
Confidence            4555665554 888887777654 59999988764 1             1233    4566666665 55666766668


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+..++.. ++.+++.++.+|       ++ +..+.|++..+++++.+++||.+.=.+.+..++.++++...+|.|++-
T Consensus       201 ~~~~~A~~-~~~l~~~~i~~i-------Ee-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k  270 (388)
T 3qld_A          201 YRPEDAPV-LRQLDAYDLQFI-------EQ-PLPEDDWFDLAKLQASLRTPVCLDESVRSVRELKLTARLGAARVLNVK  270 (388)
T ss_dssp             CCGGGHHH-HHHGGGGCCSCE-------EC-CSCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             CChHHHHH-HHHHhhCCCcEE-------EC-CCCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEEC
Confidence            99888876 888998887766       22 234557899999999999999998899999999999976668988875

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=97.19  E-value=0.0059  Score=55.59  Aligned_cols=204  Identities=13%  Similarity=0.089  Sum_probs=118.5

Q ss_pred             eEEccccCCCCHHHHHHHHHcCCCeEEe-Cceec-ccccccccccccccCcccccccCCcceeeecccC-CCCcEEEEE-
Q 020428            7 LVLAPMVRVGTLPFRLLAAQYGADITYG-EEIID-HKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ-ERNHVVFQM-   82 (326)
Q Consensus         7 iilAPM~g~t~~~fr~~~~~~G~~l~~t-e~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~vQl-   82 (326)
                      .++.|  +.-|..+.+++.+.|.+.+++ ....+ ..+.+      .+.+...+.+-  ....-..... ...|+++-+ 
T Consensus        19 ~i~~~--~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~------pD~~~vt~~em--~~~~~~I~~~~~~~PviaD~d   88 (302)
T 3fa4_A           19 FIVAP--GVYDGLSARVALSAGFDALYMTGAGTAASVHGQ------ADLGICTLNDM--RANAEMISNISPSTPVIADAD   88 (302)
T ss_dssp             CEEEE--EECSHHHHHHHHTTTCSCEEECHHHHHHHHHSC------CSSSCCCHHHH--HHHHHHHHTTSTTSCEEEECT
T ss_pred             eEEEe--cCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCC------CCCCcCCHHHH--HHHHHHHHhhccCCCEEEECC
Confidence            34444  666999999999999987764 42221 11111      11111110000  0000011111 256899888 


Q ss_pred             CC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCC----
Q 020428           83 GT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLL----  153 (326)
Q Consensus        83 ~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g----  153 (326)
                      +| .+++...+.++.+.+ |+.+|.|.-... ++.+..-.|..+.. .+...+=|++.+++.   +.++.+--|..    
T Consensus        89 ~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~-~Krcgh~~gk~l~~-~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~  166 (302)
T 3fa4_A           89 TGYGGPIMVARTTEQYSRSGVAAFHIEDQVQ-TKRCGHLAGKILVD-TDTYVTRIRAAVQARQRIGSDIVVIARTDSLQT  166 (302)
T ss_dssp             TTTSSHHHHHHHHHHHHHTTCCEEEECSBCC-C-------CCCBCC-HHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEECCCCC-CcccCCCCCCeecC-HHHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            33 368888888888776 999999975532 22222222334444 444444344444432   55666666652    


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe---CC---CCCHHHHHHHHHhcCC
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN---GD---VFEYDDFQRIKTAAGA  226 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n---Gg---I~s~~d~~~~l~~~Ga  226 (326)
                      ...+++++-++.+.++|+|.|-+++.         .+.+.++++.+.+ +.|+.+|   ||   ..|.++   +- +.|+
T Consensus       167 ~gldeAi~Ra~ay~eAGAD~ifi~g~---------~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~e---L~-~lGv  233 (302)
T 3fa4_A          167 HGYEESVARLRAARDAGADVGFLEGI---------TSREMARQVIQDLAGWPLLLNMVEHGATPSISAAE---AK-EMGF  233 (302)
T ss_dssp             HCHHHHHHHHHHHHTTTCSEEEETTC---------CCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHH---HH-HHTC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEeecCC---------CCHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHH---HH-HcCC
Confidence            24578999999999999999999874         2567888999888 4898775   33   234443   44 5799


Q ss_pred             cEEEeccch
Q 020428          227 SSVMAARGA  235 (326)
Q Consensus       227 d~VmiGr~~  235 (326)
                      ..|..+-.+
T Consensus       234 ~~v~~~~~~  242 (302)
T 3fa4_A          234 RIIIFPFAA  242 (302)
T ss_dssp             SEEEETTTT
T ss_pred             CEEEEchHH
Confidence            888877543

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=97.17  E-value=0.0012  Score=59.53  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+..++|+.++++|+++|.|-.   +..+.+ ...+.+..+++.+++||+..+.|.++.++.++. ..|||+|.++-+++
T Consensus        79 ~dp~~~A~~y~~~GA~~IsVlt---d~~~f~-Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~-~~GAD~VlLi~a~L  153 (272)
T 3tsm_A           79 FDPPALAKAYEEGGAACLSVLT---DTPSFQ-GAPEFLTAARQACSLPALRKDFLFDPYQVYEAR-SWGADCILIIMASV  153 (272)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEEC---CSTTTC-CCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHH-HTTCSEEEEETTTS
T ss_pred             CCHHHHHHHHHHCCCCEEEEec---cccccC-CCHHHHHHHHHhcCCCEEECCccCCHHHHHHHH-HcCCCEEEEccccc
Confidence            4788999999999999998753   122222 257888999999999999999999999999998 69999999998877


Q ss_pred             cC
Q 020428          237 WN  238 (326)
Q Consensus       237 ~~  238 (326)
                      .+
T Consensus       154 ~~  155 (272)
T 3tsm_A          154 DD  155 (272)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1

Probab=97.16  E-value=0.0029  Score=59.76  Aligned_cols=121  Identities=11%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           85 SDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      .+++++.+.++.+ .+||..+-+..| |             ..+.    +.++++++++ ++.+.+-..-+|+.+++ ++
T Consensus       160 ~~~~~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d~----~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~  220 (386)
T 1wue_A          160 EDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDV----EPVALIRQHFPNLPLMVDANSAYTLADL-PQ  220 (386)
T ss_dssp             SCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSH----HHHHHHHHHCTTSCEEEECTTCCCGGGH-HH
T ss_pred             CCHHHHHHHHHHHHHhhhheEEEeeC-c-------------HHHH----HHHHHHHHhCCCCeEEEeCCCCCCHHHH-HH
Confidence            4688887666654 459998888654 2             1233    4466666665 56677777767988888 88


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+++.++.+|-       | +..+.|++..+++++.+++||.+.=.+.|..++.++++...+|.|++=
T Consensus       221 ~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik  282 (386)
T 1wue_A          221 LQRLDHYQLAMIE-------Q-PFAADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLK  282 (386)
T ss_dssp             HHGGGGSCCSCEE-------C-CSCTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             HHHHHhCCCeEEe-------C-CCCcccHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEc
Confidence            9999998887762       2 234557899999999999999998899999999999976668988874

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=97.15  E-value=0.0008  Score=56.95  Aligned_cols=100  Identities=16%  Similarity=0.155  Sum_probs=70.4

Q ss_pred             HHHHHHHHhhcccCcEEEEecC--CCC-hHHHHHHHHHHHHcCCcEEEEee-------cccC----C-------------
Q 020428          131 IHDILTMLKRNLDVPVTCKIRL--LKS-SQDTVELARRIEKTGVSALAVHG-------RKVA----D-------------  183 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~--g~~-~~~~~e~a~~l~~~G~d~i~vh~-------r~~~----~-------------  183 (326)
                      +.++++.++++ ++|+.+=.-+  |.+ .++.+++.   +..++|+|+=+-       +...    |             
T Consensus        45 L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL---~~~~pdGIIsTk~~~i~~Akk~GL~tIqR~FliDs~al~~~  120 (188)
T 1vkf_A           45 LKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFV---KKAGADGIITIKPKNYVVAKKNGIPAVLRFFALDSKAVERG  120 (188)
T ss_dssp             HHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHH---HHHTCSEEEESCHHHHHHHHHTTCCEEEEEECCSHHHHHHH
T ss_pred             HHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHH---HhcCCCEEEcCcHHHHHHHHHcCCEEeeEEEEEEeHHHhhh
Confidence            77889999888 9999998776  433 45667776   777888886320       0000    0             


Q ss_pred             -------------CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          184 -------------RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       184 -------------~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                                   -..++.--+.++++   +++|||+.|+|+|.||+.+ + ..||++|..|+--|++.
T Consensus       121 ~~~I~~~kPD~iEiLPg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l-~aGA~aIsTs~~~LW~~  184 (188)
T 1vkf_A          121 IEQIETLGVDVVEVLPGAVAPKVARKI---PGRTVIAAGLVETEEEARE-I-LKHVSAISTSSRILWKM  184 (188)
T ss_dssp             HHHHHHHTCSEEEEESGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-H-TTTSSEEEECCHHHHTC
T ss_pred             hhhccccCCCeEeecCCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-H-HCCCeEEEeCCHHHhCC
Confidence                         00012123445554   6889999999999999999 9 69999999998877754

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=97.14  E-value=0.009  Score=54.59  Aligned_cols=123  Identities=13%  Similarity=0.165  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        33 iD~~~l~~lv~~li~~Gv~gi~v~Gt----------tGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~  101 (304)
T 3l21_A           33 LDTATAARLANHLVDQGCDGLVVSGT----------TGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHSIR  101 (304)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCcc----------ccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHH
Confidence            477888888887765 9999988642          33333445666677777777665  578888763 256889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-    .|..+.   -+++++.|.+++++||+ +|     |--.+++.+.++.+
T Consensus       102 la~~a~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~  167 (304)
T 3l21_A          102 LAKACAAEGAHGLLVVTP----YYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS  167 (304)
T ss_dssp             HHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence            999999999999988643    222222   24556788888899986 55     65667888888763

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=97.14  E-value=0.016  Score=52.00  Aligned_cols=156  Identities=18%  Similarity=0.242  Sum_probs=97.2

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCceecc-cccccccccccccCcccccccCCccee---eecccCC-CCcEEEEE-CC--
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEIIDH-KLLKCERRVNEYIGSTDFVEKGTDSVV---FRTCHQE-RNHVVFQM-GT--   84 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~p~~vQl-~g--   84 (326)
                      .+.-|..+.+++.+.|++.+.+...... .+.+      .+.....+     ..++   -..+... ..|+++-+ +|  
T Consensus        34 ~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~------~dt~~vtl-----dem~~h~~aV~r~~~~~~vvaD~pfgsY  102 (275)
T 3vav_A           34 LTCYDASFAALLDRANVDVQLIGDSLGNVLQGQ------TTTLPVTL-----DDIAYHTACVARAQPRALIVADLPFGTY  102 (275)
T ss_dssp             EECCSHHHHHHHHHTTCSEEEECTTHHHHTTCC------SSSTTCCH-----HHHHHHHHHHHHTCCSSEEEEECCTTSC
T ss_pred             EeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCC------CCCCccCH-----HHHHHHHHHHHhcCCCCCEEEecCCCCC
Confidence            3667999999999999998877632211 1111      00000000     0000   0111122 35788888 55  


Q ss_pred             CCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-----------
Q 020428           85 SDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-----------  152 (326)
Q Consensus        85 ~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-----------  152 (326)
                      .++++..+.+.++. .|+++|.|--|                   ....+.++++++. ++|+.--+.+           
T Consensus       103 ~s~~~a~~~a~rl~kaGa~aVklEdg-------------------~~~~~~i~~l~~~-GIpv~gHlgltPq~~~~~gg~  162 (275)
T 3vav_A          103 GTPADAFASAVKLMRAGAQMVKFEGG-------------------EWLAETVRFLVER-AVPVCAHVGLTPQSVHAFGGF  162 (275)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEECC-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCc-------------------hhHHHHHHHHHHC-CCCEEEecCCCceEEeccCCe
Confidence            47888777766554 49999998643                   1234556666654 7777643321           


Q ss_pred             ---CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 ---LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 ---g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                         |.+.   ++.++-++.++++|++.|.+-+-        |  -+.+++|.+.+++|+|+-|
T Consensus       163 ~vqgrt~~~a~~~i~rA~a~~eAGA~~ivlE~v--------p--~~~a~~It~~l~iP~igIG  215 (275)
T 3vav_A          163 KVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAV--------P--TLVAAEVTRELSIPTIGIG  215 (275)
T ss_dssp             -CCCCSHHHHHHHHHHHHHHHHHTCSEEEEESC--------C--HHHHHHHHHHCSSCEEEES
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHcCCCEEEecCC--------C--HHHHHHHHHhCCCCEEEEc
Confidence               2232   46888899999999999998754        1  2478899999999999765

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=97.13  E-value=0.012  Score=53.68  Aligned_cols=123  Identities=15%  Similarity=0.222  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~ai~   98 (301)
T 1xky_A           30 IDFAKTTKLVNYLIDNGTTAIVVGGT----------TGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHASID   98 (301)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHHHHH
Confidence            467788888887665 9999988642          33444445666677777776665  588887774 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.+
T Consensus        99 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~  164 (301)
T 1xky_A           99 LTKKATEVGVDAVMLVAP----YYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE  164 (301)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence            999999999999987643    222222   24566788888899986 55     44457888888763

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=97.12  E-value=0.00096  Score=60.95  Aligned_cols=91  Identities=14%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCc
Q 020428          132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIP  204 (326)
Q Consensus       132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iP  204 (326)
                      .+-++++++..+  .++.+-+.   +    .+.++.+.++|+|+|-++..          +.+.++++++.+     ++|
T Consensus       184 ~~ai~~~r~~~~~~~~i~vev~---t----lee~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~~~~  246 (299)
T 2jbm_A          184 EKAVRAARQAADFALKVEVECS---S----LQEAVQAAEAGADLVLLDNF----------KPEELHPTATVLKAQFPSVA  246 (299)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEES---S----HHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHhCCcCCeEEEecC---C----HHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCee
Confidence            344555555543  45665442   1    23355555789999998752          245555544443     389


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      |.++||| |.+.+.++. .+|+|++.+|+.....|++
T Consensus       247 I~ASGGI-t~~ni~~~~-~aGaD~i~vGs~i~~a~~~  281 (299)
T 2jbm_A          247 VEASGGI-TLDNLPQFC-GPHIDVISMGMLTQAAPAL  281 (299)
T ss_dssp             EEEESSC-CTTTHHHHC-CTTCCEEECTHHHHSCCCC
T ss_pred             EEEECCC-CHHHHHHHH-HCCCCEEEEChhhcCCCCc
Confidence            9999999 899999999 6999999999976555554

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=97.12  E-value=0.0096  Score=54.04  Aligned_cols=123  Identities=15%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~   86 (292)
T 2vc6_A           18 IDEVALHDLVEWQIEEGSFGLVPCG----------TTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAG-SNSTAEAIA   86 (292)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEETTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHHHH
Confidence            477888888887665 999988763          234444445666677777777665  588888774 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEEE------eCCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVIA------NGDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi~------nGgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-    .|..+.   -++.++.|.+.+++||+.      .|---+++.+.++.+
T Consensus        87 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~  152 (292)
T 2vc6_A           87 FVRHAQNAGADGVLIVSP----YYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFE  152 (292)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHh
Confidence            999999999999987643    222232   244567888889999875      354467888888874

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=97.12  E-value=0.013  Score=53.06  Aligned_cols=122  Identities=13%  Similarity=0.141  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~   86 (289)
T 2yxg_A           18 VDFDGLEENINFLIENGVSGIVAVGT----------TGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAG-SNCTEEAIE   86 (289)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHHHH
Confidence            477888888887665 9999988642          33444445666677777776655  578887764 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+++++||+ +|     |---+++.+.++.
T Consensus        87 la~~a~~~Gadavlv~~P----~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La  151 (289)
T 2yxg_A           87 LSVFAEDVGADAVLSITP----YYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLA  151 (289)
T ss_dssp             HHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence            999999999999987643    222222   24566788888899976 55     4446788888876

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=97.11  E-value=0.0037  Score=54.48  Aligned_cols=139  Identities=9%  Similarity=0.039  Sum_probs=83.6

Q ss_pred             CcEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC
Q 020428           76 NHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL  152 (326)
Q Consensus        76 ~p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~  152 (326)
                      .++++-+ +...|+.+.+++  ...|+|.+.+|..+.                .+.+.+.++.+++.-.  ..+.|-+-.
T Consensus        59 ~~iflDlKl~Dip~t~~~~~--~~~Gad~vtVH~~~g----------------~~~l~~a~~~~~~~g~~~~~~~Vt~lt  120 (221)
T 3exr_A           59 KIIVADTKCADAGGTVAKNN--AVRGADWMTCICSAT----------------IPTMKAARKAIEDINPDKGEIQVELYG  120 (221)
T ss_dssp             SEEEEEEEECSCHHHHHHHH--HTTTCSEEEEETTSC----------------HHHHHHHHHHHHHHCTTTCEEEEECCS
T ss_pred             CcEEEEEEeeccHHHHHHHH--HHcCCCEEEEeccCC----------------HHHHHHHHHHHHhcCCCcceEEEEEcC
Confidence            3566655 346688877763  334999999996432                2345556666654311  233333332


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .++.+    .++.+.+.|++.+.+|--...+...-....+.++.+++..  +++|...||| +++++..+. ..|||.++
T Consensus       121 s~~~~----~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~-~aGad~~V  194 (221)
T 3exr_A          121 DWTYD----QAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFE-GVDVFTFI  194 (221)
T ss_dssp             SCCHH----HHHHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGT-TCCCSEEE
T ss_pred             CCCHH----HHHHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHH-HCCCCEEE
Confidence            33333    2345566899998887322111111112234455666544  6889999999 567777777 69999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +||++...
T Consensus       195 vG~~I~~a  202 (221)
T 3exr_A          195 AGRGITEA  202 (221)
T ss_dssp             ECHHHHTS
T ss_pred             ECchhhCC
Confidence            99997653

>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*

Probab=97.11  E-value=0.0069  Score=58.35  Aligned_cols=122  Identities=19%  Similarity=0.257  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHh-hc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMV-CK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+|+++++.|+.. .+ ||..+-+..|-.               +++.-.+.++++|+++ ++++.+-..-+|+..++++
T Consensus       192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~  256 (445)
T 3vdg_A          192 LDPDGIVAQARRMIDEYGFSAIKLKGGVF---------------APEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVK  256 (445)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence            5788888877765 44 999998876531               3455566788888876 6678888877899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++.+++. +.+|       ++..   .+++..+++++.+++||.+.-.+.+..++.++++...+|.+++-
T Consensus       257 ~~~~L~~~-l~~i-------EeP~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d  316 (445)
T 3vdg_A          257 VAAGLEGV-LEYL-------EDPT---PGLDGMAEVAAQAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSD  316 (445)
T ss_dssp             HHHHTTTT-CSEE-------ECCS---SSHHHHHHHHHHCSSCEEESSSCCSGGGHHHHHHHTCCSEEEEC
T ss_pred             HHHHHhhH-HHee-------eCCC---CCHHHHHHHHhcCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeC
Confidence            99999988 7776       2221   37899999999999999998899999999999976668888774

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=97.09  E-value=0.016  Score=52.53  Aligned_cols=122  Identities=13%  Similarity=0.134  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~   86 (294)
T 2ehh_A           18 VDYEALGNLIEFHVDNGTDAILVCGT----------TGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHEAVH   86 (294)
T ss_dssp             ECHHHHHHHHHHHHTTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHH
Confidence            477888888887766 9999988642          33343445666677777776655  478887764 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..-    .|..+.   -++.++.|.+++++||+ +|     |---+++.+.++.
T Consensus        87 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La  151 (294)
T 2ehh_A           87 LTAHAKEVGADGALVVVP----YYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLA  151 (294)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHH
Confidence            999999999999987632    222232   24556788888899976 55     4446888888876

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=97.08  E-value=0.015  Score=53.40  Aligned_cols=123  Identities=16%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        41 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~eai~  109 (314)
T 3qze_A           41 LDWDSLAKLVDFHLQEGTNAIVAVG----------TTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTG-ANSTREAVA  109 (314)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHHHH
Confidence            477888888887665 999998864          234444445666677777776655  578888654 256889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+++++||+ +|     |---+++.+.++.+
T Consensus       110 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~  175 (314)
T 3qze_A          110 LTEAAKSGGADACLLVTP----YYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK  175 (314)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence            999999999999987642    222222   24567788888999986 44     55567888877763

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=97.07  E-value=0.0034  Score=55.12  Aligned_cols=99  Identities=15%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhcccCcEEEEecC--C---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCc
Q 020428          130 LIHDILTMLKRNLDVPVTCKIRL--L---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIP  204 (326)
Q Consensus       130 ~~~~iv~~v~~~~~~pv~vK~r~--g---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iP  204 (326)
                      .+..+++.+...-+  +.|-++.  +   .++.+..++|+.+++.|+.+|.+.            ..+.++++++.+++|
T Consensus         6 ~~~~~~~~~~~~~~--livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~------------~~~~i~~ir~~v~~P   71 (232)
T 3igs_A            6 LLEQLDKNIAASGG--LIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE------------GIDNLRMTRSLVSVP   71 (232)
T ss_dssp             HHHHHHHHHHHHCC--EEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE------------SHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHhhhcCC--EEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC------------CHHHHHHHHHhcCCC
Confidence            45556666622223  4444454  2   346789999999999999998872            367899999999999


Q ss_pred             EEE-e----CC--C---CCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          205 VIA-N----GD--V---FEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       205 Vi~-n----Gg--I---~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      |++ +    ||  +   .+.+++.+++ ..|||.|.++.+...+|....
T Consensus        72 vig~~k~d~~~~~~~I~~~~~~i~~~~-~~Gad~V~l~~~~~~~p~~l~  119 (232)
T 3igs_A           72 IIGIIKRDLDESPVRITPFLDDVDALA-QAGAAIIAVDGTARQRPVAVE  119 (232)
T ss_dssp             EEEECBCCCSSCCCCBSCSHHHHHHHH-HHTCSEEEEECCSSCCSSCHH
T ss_pred             EEEEEeecCCCcceEeCccHHHHHHHH-HcCCCEEEECccccCCHHHHH
Confidence            985 1    33  3   3567898888 699999999998887885433

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=97.06  E-value=0.012  Score=53.67  Aligned_cols=123  Identities=15%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        18 iD~~~l~~lv~~li~~Gv~gi~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~   86 (297)
T 2rfg_A           18 VDEKALAGLVDWQIKHGAHGLVPVG----------TTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG-SNNPVEAVR   86 (297)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEECSS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC-CCCHHHHHH
Confidence            477888888887655 999988763          234444445666677777776655  588887774 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.+
T Consensus        87 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~  152 (297)
T 2rfg_A           87 YAQHAQQAGADAVLCVAG----YYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA  152 (297)
T ss_dssp             HHHHHHHHTCSEEEECCC----TTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence            999999999999988632    232332   24556788888899976 55     54468888888763

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=97.06  E-value=0.0011  Score=60.08  Aligned_cols=91  Identities=12%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----CCc
Q 020428          132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----SIP  204 (326)
Q Consensus       132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~iP  204 (326)
                      .+.++++++..+  .+|.|-+.       +.+.++.+.++|+|.|.++..          ..+.++++.+.+     ++|
T Consensus       180 ~~av~~ar~~~~~~~~I~VEV~-------tleea~eA~~aGaD~I~LDn~----------~~e~l~~av~~l~~~~~~v~  242 (285)
T 1o4u_A          180 ERAVQEVRKIIPFTTKIEVEVE-------NLEDALRAVEAGADIVMLDNL----------SPEEVKDISRRIKDINPNVI  242 (285)
T ss_dssp             HHHHHHHHTTSCTTSCEEEEES-------SHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCce
Confidence            445666666552  45666442       245566677799999999874          234454444443     789


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +.++|||+ ++.+.++. .+|+|++.+|+....-|++
T Consensus       243 ieASGGIt-~eni~~~a-~tGVD~IsvGslt~sa~~~  277 (285)
T 1o4u_A          243 VEVSGGIT-EENVSLYD-FETVDVISSSRLTLQEVFV  277 (285)
T ss_dssp             EEEEECCC-TTTGGGGC-CTTCCEEEEGGGTSSCCCC
T ss_pred             EEEECCCC-HHHHHHHH-HcCCCEEEEeHHHcCCCCc
Confidence            99999994 78888888 7999999999977765543

>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae}

Probab=97.05  E-value=0.0071  Score=58.24  Aligned_cols=122  Identities=17%  Similarity=0.225  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHh-hc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMV-CK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+|+++++.|+.+ .+ ||..+-+..|-+               +++.-.+.++++|+++ ++++.+-..-+|+..++++
T Consensus       190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~  254 (445)
T 3va8_A          190 LDPEGVVKQAKKIIDEYGFKAIKLKGGVF---------------PPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKW  254 (445)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHH
Confidence            5788888877765 44 999998876532               3455566788888876 6677787777899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++.+++. +.+|-       +.   ..+++..+++++.+++||.+.-.+.+..++.++++...+|.+++-
T Consensus       255 ~~~~L~~~-l~~iE-------eP---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d  314 (445)
T 3va8_A          255 VAKELEGI-VEYLE-------DP---AGEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQDAVQVILSD  314 (445)
T ss_dssp             HHHHTTTT-CSEEE-------SC---BSHHHHHHHHHTTCSSCEEESSSCCSGGGHHHHHHTTCCSEEEEC
T ss_pred             HHHHHhhh-cCeEe-------ec---CcCHHHHHHHHHcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEec
Confidence            99999988 77762       22   137888999999999999998899999999999975668888873

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=97.04  E-value=0.014  Score=54.04  Aligned_cols=123  Identities=16%  Similarity=0.142  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        52 iD~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~eai~  120 (332)
T 2r8w_A           52 VDIEAFSALIARLDAAEVDSVGILGS----------TGIYMYLTREERRRAIEAAATILRGRRTLMAGIG-ALRTDEAVA  120 (332)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHH
Confidence            477888888887765 9999988642          34444445666677777777665  588888774 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.+
T Consensus       121 la~~A~~~Gadavlv~~P----~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~  186 (332)
T 2r8w_A          121 LAKDAEAAGADALLLAPV----SYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAY  186 (332)
T ss_dssp             HHHHHHHHTCSEEEECCC----CSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
Confidence            999999999999987633    222222   24566788888999986 45     43458888888874

>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941}

Probab=97.04  E-value=0.017  Score=54.18  Aligned_cols=121  Identities=11%  Similarity=0.146  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~  162 (326)
                      +++++.+.++. +.+||..+-+..|-                +++.-.+.++++++++  ++.+.+...-+|+.++++++
T Consensus       144 ~~~~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~  207 (372)
T 3cyj_A          144 PLRRLQEQLGGWAAAGIPRVKMKVGR----------------EPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYW  207 (372)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCS----------------SGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence            45656555554 44599999886541                4455567788888776  46777777778999999999


Q ss_pred             HHHHHHc-CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          163 ARRIEKT-GVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       163 a~~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.+++. ++.+|       +| +..+.|++..+++++.++  +||.+.=.+.|..++.++  ...+|.+++=
T Consensus       208 ~~~l~~~~~i~~i-------Eq-P~~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~ik  270 (372)
T 3cyj_A          208 AGAFAREAGISYL-------EE-PVSSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQAD  270 (372)
T ss_dssp             HHHHHHHHCCCEE-------EC-SSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEEC
T ss_pred             HHHHHhhcCCcEE-------EC-CCCcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH--hCCCCEEecC
Confidence            9999999 88876       22 224458999999999887  799998899999998887  4678988873

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=97.03  E-value=0.014  Score=50.17  Aligned_cols=127  Identities=10%  Similarity=0.036  Sum_probs=79.8

Q ss_pred             cEEEE--EC--CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428           77 HVVFQ--MG--TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        77 p~~vQ--l~--g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      ++++-  +.  +++|+.+.   +.+.+ |+|.|.+|....                +    +.++.+++..+  +++...
T Consensus        53 ~v~~D~kl~DI~~t~~~~v---~~~~~~Gad~vtvh~~~g----------------~----~~i~~~~~~~g--v~vl~~  107 (208)
T 2czd_A           53 EIIADLKLADIPNTNRLIA---RKVFGAGADYVIVHTFVG----------------R----DSVMAVKELGE--IIMVVE  107 (208)
T ss_dssp             EEEEEEEECSCHHHHHHHH---HHHHHTTCSEEEEESTTC----------------H----HHHHHHHTTSE--EEEECC
T ss_pred             EEEEEeeeCchHHHHHHHH---HHHHhcCCCEEEEeccCC----------------H----HHHHHHHHhCC--cEEEEe
Confidence            45544  34  45554444   33334 899999986321                1    12455554433  444433


Q ss_pred             CCCC------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCH-HHHHHHHHh
Q 020428          152 LLKS------SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEY-DDFQRIKTA  223 (326)
Q Consensus       152 ~g~~------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~-~d~~~~l~~  223 (326)
                      +...      .+....++....+.|++++.+.+.          ..+.++++++..+ -+++..|||+.. .++.+++ .
T Consensus       108 t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~----------~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~-~  176 (208)
T 2czd_A          108 MSHPGALEFINPLTDRFIEVANEIEPFGVIAPGT----------RPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAV-K  176 (208)
T ss_dssp             CCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCS----------STHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHH-H
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCC----------ChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHH-H
Confidence            3211      234556778888999999866532          2355677777665 367899999863 3688888 5


Q ss_pred             cCCcEEEeccchhcCc
Q 020428          224 AGASSVMAARGALWNA  239 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P  239 (326)
                      .|+|++.+||+++..+
T Consensus       177 aGad~vvvGr~I~~a~  192 (208)
T 2czd_A          177 AGADYIIVGRAIYNAP  192 (208)
T ss_dssp             HTCSEEEECHHHHTSS
T ss_pred             cCCCEEEEChHHhcCC
Confidence            8999999999988653

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=97.01  E-value=0.0043  Score=56.21  Aligned_cols=89  Identities=13%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             HHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          133 DILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       133 ~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      +-++.+++..+  .+|.+-+.       +.+.++.+.++|+|+|.++..+          .+.++++.+.+  ++|+.+.
T Consensus       184 ~av~~ar~~~~~~~~IgVev~-------t~eea~eA~~aGaD~I~ld~~~----------~~~~k~av~~v~~~ipi~As  246 (286)
T 1x1o_A          184 EAVRRAKARAPHYLKVEVEVR-------SLEELEEALEAGADLILLDNFP----------LEALREAVRRVGGRVPLEAS  246 (286)
T ss_dssp             HHHHHHHHHSCTTSCEEEEES-------SHHHHHHHHHHTCSEEEEESCC----------HHHHHHHHHHHTTSSCEEEE
T ss_pred             HHHHHHHHhCCCCCEEEEEeC-------CHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhCCCCeEEEE
Confidence            35666666552  45655442       2444566678899999998752          34455555544  6999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |||+ ++.+.++. .+|+|+|.+|+....-|+
T Consensus       247 GGIt-~eni~~~a-~tGvD~IsVgs~~~~a~~  276 (286)
T 1x1o_A          247 GNMT-LERAKAAA-EAGVDYVSVGALTHSAKA  276 (286)
T ss_dssp             SSCC-HHHHHHHH-HHTCSEEECTHHHHSCCC
T ss_pred             cCCC-HHHHHHHH-HcCCCEEEEcHHHcCCCc
Confidence            9995 89999998 699999999986665454

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=97.00  E-value=0.016  Score=52.63  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        25 iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~   93 (297)
T 3flu_A           25 IHYEQLRDLIDWHIENGTDGIVAVGT----------TGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG-ANNTVEAIA   93 (297)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCcc----------ccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHHHH
Confidence            477888888887665 9999988642          33333445666677777776655  588888663 257889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-    .|..+.   -+++++.|.+++++||+ +|     |---+++.+.++.
T Consensus        94 la~~a~~~Gadavlv~~P----~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La  158 (297)
T 3flu_A           94 LSQAAEKAGADYTLSVVP----YYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLA  158 (297)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHH
Confidence            999999999999987642    222222   24567788888899986 54     5455777777765

>4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A*

Probab=96.99  E-value=0.013  Score=55.00  Aligned_cols=129  Identities=7%  Similarity=0.090  Sum_probs=94.5

Q ss_pred             cEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~  152 (326)
                      |+-..++..+++++.+.++... +||..+-+..|..               +++.-.+.++++++++   ++.+.+-..-
T Consensus       141 ~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~---------------~~~~di~~v~~vr~a~~g~~~~l~vDaN~  205 (376)
T 4h2h_A          141 SSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGAR---------------PIEIDIEAIRKVWEAVRGTGIALAADGNR  205 (376)
T ss_dssp             ECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTSCCEEEEECTT
T ss_pred             eEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCC---------------CHHHHHHHHHHHHhhccCCeeEEEEeecc
Confidence            5556677788888777666554 4999999876632               2233345566666654   4667777777


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +|+..+++++++.+++.+. ++       +|.   -.+++.++.+++.+++||.+.=.+.+..++.++++...+|.+++
T Consensus       206 ~~~~~~A~~~~~~l~~~~~-~i-------EeP---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~v~~  273 (376)
T 4h2h_A          206 GWTTRDALRFSRECPDIPF-VM-------EQP---CNSFEDLEAIRPLCHHALYMDEDGTSLNTVITAAATSLVDGFGM  273 (376)
T ss_dssp             CCCHHHHHHHHHHCTTSCE-EE-------ESC---SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             CCCHHHHHHHHHHHhhccc-cc-------cCC---cchhhhHhhhhhcccCccccCcccCCHHHHHHHHHhhccCcccc
Confidence            8999999999999987764 32       221   12578889999999999999889999999999996555788765

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=96.99  E-value=0.015  Score=54.00  Aligned_cols=122  Identities=15%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        49 ID~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~eai~  117 (343)
T 2v9d_A           49 LDKPGTAALIDDLIKAGVDGLFFLGS----------GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG-GTNARETIE  117 (343)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-SSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHH
Confidence            467788888887665 8999888642          33444445666677777777665  588887764 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.
T Consensus       118 la~~A~~~Gadavlv~~P----~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La  182 (343)
T 2v9d_A          118 LSQHAQQAGADGIVVINP----YYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLA  182 (343)
T ss_dssp             HHHHHHHHTCSEEEEECC----SSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence            999999999999987632    222222   24556788888899976 45     4345788888776

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=96.98  E-value=0.0076  Score=55.32  Aligned_cols=120  Identities=16%  Similarity=0.140  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+..  +..++++
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~--st~~ai~   97 (314)
T 3d0c_A           30 IDWKGLDDNVEFLLQNGIEVIVPNG----------NTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY--SVDTAIE   97 (314)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEECTTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS--SHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECc----------ccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc--CHHHHHH
Confidence            477888888887665 899987653          234444445666677777777655  5899998864  7889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee--CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN--GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n--GgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+++++||+ +|  |- -+++.+.++.
T Consensus        98 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~tg~-l~~~~~~~La  158 (314)
T 3d0c_A           98 LGKSAIDSGADCVMIHQP----VHPYITDAGAVEYYRNIIEALDAPSIIYFKDAH-LSDDVIKELA  158 (314)
T ss_dssp             HHHHHHHTTCSEEEECCC----CCSCCCHHHHHHHHHHHHHHSSSCEEEEECCTT-SCTHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC-cCHHHHHHHH
Confidence            999999999999988643    222232   24566788888999986 45  43 6778777765

>3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A

Probab=96.98  E-value=0.0097  Score=57.25  Aligned_cols=122  Identities=13%  Similarity=0.225  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHh-hc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMV-CK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+|+++++.|+.+ .+ ||..+-+..|..               +++.-.+.++++|+++ ++++.+-..-+|+..++++
T Consensus       187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~  251 (441)
T 3vc5_A          187 LDPDGIVAQARLLIGEYGFRSIKLKGGVF---------------PPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIR  251 (441)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHH
Confidence            5789888877765 44 999998876532               3445556788888877 6678888777899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++.+++. +.+|       +|..   .+++..+++++.+++||.+.=.+.+..++.++++...+|.+++-
T Consensus       252 ~~~~L~~~-l~~i-------EeP~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d  311 (441)
T 3vc5_A          252 VGRALDGV-LEYL-------EDPT---PGIDGMARVAAEVPMPLATNMCVVTPEHLPAAVERRPIGVLLID  311 (441)
T ss_dssp             HHHHTTTT-CSEE-------ECCS---SSHHHHHHHHTTSSSCEEESSSCCSGGGHHHHHHHCCCSEEEEC
T ss_pred             HHHHHHHH-HHHh-------hccC---CCHHHHHHHHhcCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeec
Confidence            99999988 7776       2221   37889999999999999988889999999999976668888773

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=96.96  E-value=0.026  Score=51.20  Aligned_cols=122  Identities=9%  Similarity=0.074  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        21 iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~   89 (294)
T 3b4u_A           21 VDIDAMIAHARRCLSNGCDSVTLFGT----------TGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVL-VDSIEDAAD   89 (294)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEEC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CccHHHHHH
Confidence            477788888887665 9999988642          34444446677778888887776  578888775 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCC-cC---CHHHHHHHHHhc---CCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRD-PA---KWGEIADIVAAL---SIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~-~~---~~~~i~~i~~~~---~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..-    .|.. +.   -+++++.|.+++   ++||+ +|     |---+++.+.++.
T Consensus        90 la~~A~~~Gadavlv~~P----~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La  158 (294)
T 3b4u_A           90 QSAEALNAGARNILLAPP----SYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK  158 (294)
T ss_dssp             HHHHHHHTTCSEEEECCC----CSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEcCC----cCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence            999999999999988633    2222 22   245667888888   89986 55     4446788888887

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=96.95  E-value=0.02  Score=52.53  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=87.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        40 iD~~~l~~li~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~~ai~  108 (315)
T 3si9_A           40 IDEKAFCNFVEWQITQGINGVSPVGT----------TGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG-SNSTSEAVE  108 (315)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEECSST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCcc----------ccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHHHH
Confidence            467888888887665 9999977632          33333345666677777776655  588888664 257889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.+
T Consensus       109 la~~A~~~Gadavlv~~P----~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~  174 (315)
T 3si9_A          109 LAKHAEKAGADAVLVVTP----YYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCR  174 (315)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHh
Confidence            999999999999987643    222222   24566788888899986 54     55567888888875

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=96.94  E-value=0.02  Score=52.59  Aligned_cols=121  Identities=17%  Similarity=0.143  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        42 iD~~~l~~lv~~li~~Gv~Gi~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~~t~~ai~  110 (315)
T 3na8_A           42 LDLPALGRSIERLIDGGVHAIAPLG----------STGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVS-DLTTAKTVR  110 (315)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEECSS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHH
Confidence            467788888887765 999998764          234444445666677777776655  588888664 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRI  220 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~  220 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |--.+++.+.++
T Consensus       111 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L  174 (315)
T 3na8_A          111 RAQFAESLGAEAVMVLPI----SYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRI  174 (315)
T ss_dssp             HHHHHHHTTCSEEEECCC----CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHH
Confidence            999999999999988543    222222   24566788888899986 55     555578888887

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=96.93  E-value=0.024  Score=51.61  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~vK~r~g~~~~~~~  160 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+   .+||.+-+. +.+..+++
T Consensus        25 iD~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg-~~~t~~ai   93 (301)
T 3m5v_A           25 VDEQSYARLIKRQIENGIDAVVPVGT----------TGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG-SNATHEAV   93 (301)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEECSST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC-CSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC-CCCHHHHH
Confidence            477888888887765 9999987642          33343445666677777776665   368888653 25788999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHHh
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKTA  223 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~~  223 (326)
                      ++++.+++.|+|++.+..-    .|..+.   -++.++.|.+++++||+ +|     |---+++.+.++.+.
T Consensus        94 ~la~~a~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~  161 (301)
T 3m5v_A           94 GLAKFAKEHGADGILSVAP----YYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRD  161 (301)
T ss_dssp             HHHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhc
Confidence            9999999999999988643    222222   24567788888999986 54     555678888888754

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=96.93  E-value=0.022  Score=51.64  Aligned_cols=123  Identities=13%  Similarity=0.138  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        20 iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~   88 (292)
T 3daq_A           20 VNLEALKAHVNFLLENNAQAIIVNG----------TTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEKSIQ   88 (292)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHHHH
Confidence            367778888877655 999998764          233443445566667777776655  588888664 256889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..=    .|..+.   -+++++.|.+++++||+ +|     |---+++.+.++.+
T Consensus        89 la~~a~~~Gadavlv~~P----~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~  154 (292)
T 3daq_A           89 ASIQAKALGADAIMLITP----YYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ  154 (292)
T ss_dssp             HHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence            999999999999987632    122222   24566788888899986 54     55567888877764

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=96.93  E-value=0.02  Score=51.92  Aligned_cols=122  Identities=17%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~   87 (291)
T 3tak_A           19 VDWKSLEKLVEWHIEQGTNSIVAVGT----------TGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTG-ANSTREAIE   87 (291)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECcc----------ccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHH
Confidence            477888888887665 9999977642          23333334566677777776655  578888654 256889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..-    .|..+.   -+++++.|.+.+++||+ +|     |---+++.+.++.
T Consensus        88 la~~a~~~Gadavlv~~P----~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La  152 (291)
T 3tak_A           88 LTKAAKDLGADAALLVTP----YYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLA  152 (291)
T ss_dssp             HHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHH
Confidence            999999999999987643    122222   25567788888999986 54     5556788777775

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=96.91  E-value=0.012  Score=50.57  Aligned_cols=180  Identities=11%  Similarity=0.073  Sum_probs=104.1

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC-CHHHHH
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS-DAVRAL   91 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~-~~~~~~   91 (326)
                      +|.|+..=...+.+.|++.+.--+. +.+    .|..          ..+.-..+....+..  ...|-+|.+ +++...
T Consensus         7 CGit~~eda~~a~~~GaD~iGfif~-~~S----pR~V----------~~~~a~~i~~~~~~~--~~~VgVfvn~~~~~i~   69 (205)
T 1nsj_A            7 CGITNLEDALFSVESGADAVGFVFY-PKS----KRYI----------SPEDARRISVELPPF--VFRVGVFVNEEPEKIL   69 (205)
T ss_dssp             CCCCSHHHHHHHHHHTCSEEEEECC-TTC----TTBC----------CHHHHHHHHHHSCSS--SEEEEEESSCCHHHHH
T ss_pred             CCCCcHHHHHHHHHcCCCEEEEEec-CCC----CCcC----------CHHHHHHHHHhCCCC--CCEEEEEeCCCHHHHH
Confidence            6888888888899999876642221 111    0100          000001112222221  234444554 566666


Q ss_pred             HHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC
Q 020428           92 TAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV  171 (326)
Q Consensus        92 ~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~  171 (326)
                      +.++.+  +.|.|.||..                ..|+.+.    .++.  ++|+.--++... ..+   + ..+.+..+
T Consensus        70 ~~~~~~--~ld~vQLHG~----------------e~~~~~~----~l~~--~~~vika~~v~~-~~~---l-~~~~~~~~  120 (205)
T 1nsj_A           70 DVASYV--QLNAVQLHGE----------------EPIELCR----KIAE--RILVIKAVGVSN-ERD---M-ERALNYRE  120 (205)
T ss_dssp             HHHHHH--TCSEEEECSC----------------CCHHHHH----HHHT--TSEEEEEEEESS-HHH---H-HHHGGGTT
T ss_pred             HHHHhh--CCCEEEECCC----------------CCHHHHH----HHhc--CCCEEEEEEcCC-HHH---H-HHHHHcCC
Confidence            655543  7899999831                2344443    3332  366665555432 222   1 22334449


Q ss_pred             cEEEEeecccC-CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          172 SALAVHGRKVA-DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       172 d~i~vh~r~~~-~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |++.+...... ++.....||+.++.++ ..+.|++..||+ +++.+.++++..++.||-+.+|.=..|.
T Consensus       121 d~~LlD~~~~~~GGtG~~fdw~~l~~~~-~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG  188 (205)
T 1nsj_A          121 FPILLDTKTPEYGGSGKTFDWSLILPYR-DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPG  188 (205)
T ss_dssp             SCEEEEESCSSSSSCCSCCCGGGTGGGG-GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred             CEEEECCCCCCCCCCCCccCHHHHHhhh-cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceecCCC
Confidence            99999865431 2333467998876542 347899999999 4778877776679999999999765554

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=96.91  E-value=0.021  Score=52.29  Aligned_cols=127  Identities=13%  Similarity=0.146  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        26 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~   94 (309)
T 3fkr_A           26 LDLASQKRAVDFMIDAGSDGLCILA----------NFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTS-HYSTQVCAA   94 (309)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CchHHHHHH
Confidence            477888888887765 999988863          234444445666677777777665  588988874 256889999


Q ss_pred             HHHHHHHcCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhcCCcEE-Ee----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVA--DRPRDPAKWGEIADIVAALSIPVI-AN----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~iPVi-~n----GgI~s~~d~~~~l~  222 (326)
                      +++.++++|+|++.+..-.-.  ...+...-++.++.|.+++++||+ +|    |--.+++.+.++.+
T Consensus        95 la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~  162 (309)
T 3fkr_A           95 RSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAR  162 (309)
T ss_dssp             HHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence            999999999999988542110  011111225567788888899976 44    54467888888764

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=96.91  E-value=0.021  Score=52.09  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~~st~~ai~   98 (306)
T 1o5k_A           30 LDLESYERLVRYQLENGVNALIVLG----------TTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKTLK   98 (306)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC-CccHHHHHH
Confidence            477888888887665 999998864          234444445666677777776655  588887774 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.
T Consensus        99 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La  163 (306)
T 1o5k_A           99 LVKQAEKLGANGVLVVTP----YYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIA  163 (306)
T ss_dssp             HHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHH
Confidence            999999999999987643    222222   24556788888899976 45     4345788888876

>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A*

Probab=96.90  E-value=0.0045  Score=57.17  Aligned_cols=131  Identities=14%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~  154 (326)
                      |+-.-+...+++++.+.++  ..||..+-+..|.+         |..    ++.-.+.++++|+.+  ++.+.+-..-+|
T Consensus        71 ~~~~ti~~~~~e~~~~~~~--~~G~~~~KiKvg~~---------g~~----~~~d~~~v~avR~~~G~~~~L~vDaN~~w  135 (327)
T 2opj_A           71 PVNATVPAVGPEEAARIVA--SSGCTTAKVKVAER---------GQS----EANDVARVEAVRDALGPRGRVRIDVNGAW  135 (327)
T ss_dssp             EBCEEECSCCHHHHHHHHH--HHCCSEEEEECCC-------------------CHHHHHHHHHHHHCTTSEEEEECTTCS
T ss_pred             EEeEEeCCCCHHHHHHHHH--HCCCCEEEEEeCCC---------CCC----HHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            3333455567887655544  46999999877643         111    222346678888776  466777777789


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.++++++++.+++.++.+|       +|..   .+++..+++++.+++||.+.=.+.+..|+.++++...+|.|++=
T Consensus       136 ~~~~A~~~~~~L~~~~l~~i-------EqP~---~~~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik  203 (327)
T 2opj_A          136 DVDTAVRMIRLLDRFELEYV-------EQPC---ATVDELAEVRRRVSVPIAADESIRRAEDPLRVRDAEAADVVVLK  203 (327)
T ss_dssp             CHHHHHHHHHHHGGGCEEEE-------ECCS---SSHHHHHHHHHHCSSCEEC-----------CTTTTTCCSBEEEC
T ss_pred             CHHHHHHHHHHHHhcCCcEE-------eCCC---CCHHHHHHHHhhCCCCEEcCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence            99999999999999887765       2221   25788899999999999999899999999998865558888874

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=96.90  E-value=0.0012  Score=65.23  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=57.8

Q ss_pred             HHHHHHHHHcC---CcEEEEeecccC---CCCC-CcCCHHHHHHHHHh------cCCcEEEeCCCCCHHHHHHHHHh---
Q 020428          160 VELARRIEKTG---VSALAVHGRKVA---DRPR-DPAKWGEIADIVAA------LSIPVIANGDVFEYDDFQRIKTA---  223 (326)
Q Consensus       160 ~e~a~~l~~~G---~d~i~vh~r~~~---~~~~-~~~~~~~i~~i~~~------~~iPVi~nGgI~s~~d~~~~l~~---  223 (326)
                      .+.+..+.+.|   +|+|.+..--..   ..+. .+..++.++++++.      .++||++-||| +++++.++++.   
T Consensus       118 ~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~  196 (540)
T 3nl6_A          118 PEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVS  196 (540)
T ss_dssp             HHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhcc
Confidence            34566778889   999998543221   1222 34457888888775      48999999999 78999999942   


Q ss_pred             ----cCCcEEEeccchhcCc
Q 020428          224 ----AGASSVMAARGALWNA  239 (326)
Q Consensus       224 ----~Gad~VmiGr~~l~~P  239 (326)
                          .|+|+|.++++++..+
T Consensus       197 ~g~~~GadgvAVvsaI~~a~  216 (540)
T 3nl6_A          197 SNGKRSLDGICVVSDIIASL  216 (540)
T ss_dssp             TTSSCBCSCEEESHHHHTCT
T ss_pred             cccccCceEEEEeHHHhcCC
Confidence                7899999999988644

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=96.88  E-value=0.028  Score=51.38  Aligned_cols=127  Identities=13%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        32 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~  100 (307)
T 3s5o_A           32 VDYGKLEENLHKLGTFPFRGFVVQG----------SNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSG-CESTQATVE  100 (307)
T ss_dssp             BCHHHHHHHHHHHTTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecC-CCCHHHHHH
Confidence            467788888887766 999998864          234444456677788888888776  578887653 257889999


Q ss_pred             HHHHHHHcCCcEEEEeecc-cCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRK-VADRPRDPAKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~-~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..=. .....+...-+++++.|.+.+++||+ +|     |---+++.+.++.+
T Consensus       101 la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~  168 (307)
T 3s5o_A          101 MTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ  168 (307)
T ss_dssp             HHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc
Confidence            9999999999999875321 10001111235567788888899986 54     33457788777763

>3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A*

Probab=96.86  E-value=0.0087  Score=55.45  Aligned_cols=123  Identities=12%  Similarity=0.237  Sum_probs=93.2

Q ss_pred             EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHH
Q 020428           81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDT  159 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~  159 (326)
                      .++..+++++.+.++...+||..+-+..|..                  .-.+.++++|++++..+.+-..-+| +.+++
T Consensus       129 ~~~~~~~e~~~~~a~~~~~g~~~~K~Kvg~~------------------~d~~~v~avR~~~~~~l~vDaN~~~t~~~~A  190 (338)
T 3ijl_A          129 TIGIDTPDVVRAKTKECAGLFNILKVKLGRD------------------NDKEMIETIRSVTDLPIAVDANQGWKDRQYA  190 (338)
T ss_dssp             BCCCCCHHHHHHHHHHHHTTCSSEEEECSSS------------------CHHHHHHHHHTTCCCCEEEECTTCCCCHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHhcccEEEEecCcH------------------HHHHHHHHHHhhcCCcEEEECcCCCCCHHHH
Confidence            3445689988888877655888888876531                  1245688888888777777777789 59999


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      .++++.+++.++.+|       +| +..+-|++..+++++.+++||.+.=.+.|..++.+++  ..+|.+++
T Consensus       191 ~~~~~~l~~~~i~~i-------Ee-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~--~a~d~i~~  252 (338)
T 3ijl_A          191 LDMIHWLKEKGIVMI-------EQ-PMPKEQLDDIAWVTQQSPLPVFADESLQRLGDVAALK--GAFTGINI  252 (338)
T ss_dssp             HHHHHHHHHTTEEEE-------EC-CSCTTCHHHHHHHHHTCSSCEEESTTCCSGGGTGGGB--TTBSEEEE
T ss_pred             HHHHHHHhhCCCCEE-------EC-CCCCCcHHHHHHHHhcCCCCEEECCCCCCHHHHHHHH--hhCCEEEe
Confidence            999999999987765       22 2345579999999999999999988999999887765  35676653

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.86  E-value=0.014  Score=50.03  Aligned_cols=193  Identities=14%  Similarity=0.071  Sum_probs=111.8

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC-CHHHH
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS-DAVRA   90 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~-~~~~~   90 (326)
                      .+|.|+..=...+.++|++.+.--+. +.+    .|..          ....-..+....+..  +..|-+|.+ +++..
T Consensus         5 ICGit~~eda~~a~~~GaD~iGfif~-~~S----pR~V----------~~~~a~~i~~~~~~~--~~~VgVfvn~~~~~i   67 (203)
T 1v5x_A            5 ICGITRLEDALLAEALGAFALGFVLA-PGS----RRRI----------APEAARAIGEALGPF--VVRVGVFRDQPPEEV   67 (203)
T ss_dssp             ECCCCCHHHHHHHHHHTCSEEEEECC-TTC----TTBC----------CHHHHHHHHHHSCSS--SEEEEEESSCCHHHH
T ss_pred             EcCCCcHHHHHHHHHcCCCEEEEEec-CCC----CCcC----------CHHHHHHHHHhCCCC--CCEEEEEeCCCHHHH
Confidence            36888888888899999876642221 111    0100          000001112222222  234444554 56666


Q ss_pred             HHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcC
Q 020428           91 LTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTG  170 (326)
Q Consensus        91 ~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G  170 (326)
                      .+.++.+  +.|.|.||..                ..|+.+.++    +.  ++|+.--++..... +   +  .+.+..
T Consensus        68 ~~~~~~~--~ld~vQLHG~----------------e~~~~~~~l----~~--~~~vika~~v~~~~-~---l--~~~~~~  117 (203)
T 1v5x_A           68 LRLMEEA--RLQVAQLHGE----------------EPPEWAEAV----GR--FYPVIKAFPLEGPA-R---P--EWADYP  117 (203)
T ss_dssp             HHHHHHT--TCSEEEECSC----------------CCHHHHHHH----TT--TSCEEEEEECSSSC-C---G--GGGGSS
T ss_pred             HHHHHhh--CCCEEEECCC----------------CCHHHHHHh----cc--CCCEEEEEEcCChH-h---h--hhhhcC
Confidence            6655543  7899999831                245554443    22  57777666653221 1   1  123344


Q ss_pred             CcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCH
Q 020428          171 VSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHW  250 (326)
Q Consensus       171 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~  250 (326)
                      +|++.+....  ++.....||+.++.+. ..+.|++..||++ ++.+.+++ ..++.||-+.+|.=..|..      ...
T Consensus       118 ~d~~LlD~~~--gGtG~~fdW~~l~~~~-~~~~p~~LAGGL~-peNV~~ai-~~~p~gVDvsSGvE~~pG~------KD~  186 (203)
T 1v5x_A          118 AQALLLDGKR--PGSGEAYPRAWAKPLL-ATGRRVILAGGIA-PENLEEVL-ALRPYALDLASGVEEAPGV------KSA  186 (203)
T ss_dssp             CSEEEEECSS--TTSCCCCCGGGGHHHH-HTTSCEEECSSCC-STTHHHHH-HHCCSEEEESGGGEEETTE------ECH
T ss_pred             CCEEEEcCCC--CCCCCccCHHHHHhhh-ccCCcEEEECCCC-HHHHHHHH-hcCCCEEEeCCceecCCCC------cCH
Confidence            8999988643  3334567999887732 2468999999995 77787777 6899999999997655543      222


Q ss_pred             HHHHHHHHHHHHh
Q 020428          251 EDVKREYVRKSIF  263 (326)
Q Consensus       251 ~~~~~~~~~~~~~  263 (326)
                       +.+++|++....
T Consensus       187 -~ki~~fi~~~r~  198 (203)
T 1v5x_A          187 -EKLRALFARLAS  198 (203)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH
Confidence             334566665544

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=96.85  E-value=0.014  Score=54.75  Aligned_cols=96  Identities=17%  Similarity=0.253  Sum_probs=69.8

Q ss_pred             HHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC------------------------C--------
Q 020428          136 TMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA------------------------D--------  183 (326)
Q Consensus       136 ~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~------------------------~--------  183 (326)
                      +++......|.++.+-.+.+.+...++++.++++|++.|.|+--+..                        +        
T Consensus       115 eev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~  194 (370)
T 1gox_A          115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDK  194 (370)
T ss_dssp             HHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC----
T ss_pred             HHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhcccc
Confidence            34444334577777655566777788999999999999887633210                        0        


Q ss_pred             ------------CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          184 ------------RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       184 ------------~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                                  ......+|+.++++++.+++||+. +++.+++++..+. +.|+|+|.++-
T Consensus       195 ~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~v-K~~~~~e~a~~a~-~~Gad~I~vs~  254 (370)
T 1gox_A          195 ANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILV-KGVITAEDARLAV-QHGAAGIIVSN  254 (370)
T ss_dssp             -----HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEE-ECCCSHHHHHHHH-HTTCSEEEECC
T ss_pred             ccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEE-EecCCHHHHHHHH-HcCCCEEEECC
Confidence                        001234688899999999999995 6789999999998 69999999953

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=96.85  E-value=0.023  Score=51.32  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC-CC-C------h-----HHHHHHHHHHHHcCCcEEEEeecccCCCCCC--c
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL-LK-S------S-----QDTVELARRIEKTGVSALAVHGRKVADRPRD--P  188 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g~-~------~-----~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~  188 (326)
                      +..|-+..+++++..... ++.|-.-+.. |. +      .     .++.+..+.+++.|+|.|.+.=.|..+.|.+  .
T Consensus       110 ~eeNi~~Tk~vv~~ah~~-gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~  188 (286)
T 1gvf_A          110 FAENVKLVKSVVDFCHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPK  188 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCccccCcCCCCc
Confidence            334555666666666543 5555554443 11 1      0     2356666777789999998765555555543  4


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccch
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .+++.+++|++.+++|++.-||=.+ .+++++++ ..|+.-|=|++.+
T Consensus       189 Ld~~~L~~I~~~~~vpLVlHGgSG~~~e~i~~ai-~~Gv~KiNi~Tdl  235 (286)
T 1gvf_A          189 IDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI-ELGVTKVNVATEL  235 (286)
T ss_dssp             CCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHH-HTTEEEEEECHHH
T ss_pred             cCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HCCCeEEEEChHH
Confidence            6899999999999999998886544 56688888 6898888888764

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=96.84  E-value=0.00093  Score=60.88  Aligned_cols=91  Identities=10%  Similarity=0.084  Sum_probs=49.8

Q ss_pred             HHHHHHHhhccc--CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--------
Q 020428          132 HDILTMLKRNLD--VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--------  201 (326)
Q Consensus       132 ~~iv~~v~~~~~--~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--------  201 (326)
                      .+-++++++..+  .++.+-+.   +.    +.++.+.++|+|+|-++..+          .+.++++++.+        
T Consensus       186 ~~ai~~~r~~~~~~~~i~vev~---tl----ee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~~  248 (294)
T 3c2e_A          186 TNAVKNARAVCGFAVKIEVECL---SE----DEATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGKK  248 (294)
T ss_dssp             HHHHHHHHHHHCTTSCEEEECS---SS----HHHHHHHHHTCSEEECCC-------------------------------
T ss_pred             HHHHHHHHHhcCcCCeEEEecC---CH----HHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCCC
Confidence            445566665553  45555442   12    23444456899999886531          23334433333        


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      ++||.++||| |.+.+.++. .+|+|++.+|+.....|++
T Consensus       249 ~v~I~ASGGI-t~~ni~~~~-~~GvD~i~vGs~i~~a~~~  286 (294)
T 3c2e_A          249 HFLLECSGGL-NLDNLEEYL-CDDIDIYSTSSIHQGTPVI  286 (294)
T ss_dssp             CCEEEEECCC-CC------C-CCSCSEEECGGGTSSCCCC
T ss_pred             CeEEEEECCC-CHHHHHHHH-HcCCCEEEEechhcCCCCC
Confidence            2899999999 899999999 6999999999986655553

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=96.83  E-value=0.025  Score=51.60  Aligned_cols=122  Identities=16%  Similarity=0.254  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        34 iD~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~st~~ai~  102 (304)
T 3cpr_A           34 IDIAAGREVAAYLVDKGLDSLVLAGT----------TGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG-TNNTRTSVE  102 (304)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESST----------TTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC-CCCHHHHHH
Confidence            467788888887665 9999888642          33343345666677777776655  478887764 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..=    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.
T Consensus       103 la~~A~~~Gadavlv~~P----~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La  167 (304)
T 3cpr_A          103 LAEAAASAGADGLLVVTP----YYSKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRLS  167 (304)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence            999999999999987632    232232   24556788888899976 55     4335778777765

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=96.82  E-value=0.025  Score=51.59  Aligned_cols=123  Identities=12%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        29 iD~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~ai~   97 (303)
T 2wkj_A           29 LDKASLRRLVQFNIQQGIDGLYVGGS----------TGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAESQQ   97 (303)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECee----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHH
Confidence            467788888887665 9999988642          33444445666677777776655  578888764 246789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcC-CcEE-Ee----CCC-CCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALS-IPVI-AN----GDV-FEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~-iPVi-~n----GgI-~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-    .|..+.   -++.++.|.+.++ +||+ +|    .|+ -+++.+.++.+
T Consensus        98 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~  164 (303)
T 2wkj_A           98 LAASAKRYGFDAVSAVTP----FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVT  164 (303)
T ss_dssp             HHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred             HHHHHHhCCCCEEEecCC----CCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence            999999999999987633    232232   2455678888888 9986 55    243 57888888764

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=96.82  E-value=0.047  Score=49.48  Aligned_cols=123  Identities=12%  Similarity=0.116  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHh-h-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMV-C-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      -|.+.+.+.++.+ . .|+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..+++
T Consensus        21 iD~~~l~~lv~~li~~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai   89 (293)
T 1f6k_A           21 INEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAV   89 (293)
T ss_dssp             BCHHHHHHHHHHHHHTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCcEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecC-CCCHHHHH
Confidence            4677787777765 4 4899998863          234444445666677777777655  578887764 25678999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      ++++.++++|+|++.+..-    .|..+.   -++.++.|.+.+++||+ +|     |---+++.+.++.+
T Consensus        90 ~la~~a~~~Gadavlv~~P----~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~  156 (293)
T 1f6k_A           90 ELGKYATELGYDCLSAVTP----FYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK  156 (293)
T ss_dssp             HHHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred             HHHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc
Confidence            9999999999999987633    222232   24566788888899986 55     43357888888763

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.81  E-value=0.055  Score=47.24  Aligned_cols=115  Identities=13%  Similarity=0.128  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--C---ChHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--K---SSQDT  159 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g--~---~~~~~  159 (326)
                      ++..+.+.|+.+.+ |+.+|..+                   .    .+.++++++.+++||.-..+..  .   -...+
T Consensus        34 ~~~~~~~~A~a~~~~Ga~~i~~~-------------------~----~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~   90 (229)
T 3q58_A           34 KPEIVAAMAQAAASAGAVAVRIE-------------------G----IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPY   90 (229)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEE-------------------S----HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCS
T ss_pred             CcchHHHHHHHHHHCCCcEEEEC-------------------C----HHHHHHHHHhcCCCEEEEEeecCCCCceEeCcc
Confidence            47888888888877 89998863                   1    2457889999999987544431  1   11123


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      .+.+..+.++|+|.|.+......    .|.. .++++.+++ .++++++  ++.|.+++.++. +.|+|.|.+
T Consensus        91 ~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~-~g~~v~~--~v~t~eea~~a~-~~Gad~Ig~  155 (229)
T 3q58_A           91 LQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRL-HGLLAMA--DCSTVNEGISCH-QKGIEFIGT  155 (229)
T ss_dssp             HHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-TTCEEEE--ECSSHHHHHHHH-HTTCSEEEC
T ss_pred             HHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHH-CCCEEEE--ecCCHHHHHHHH-hCCCCEEEe
Confidence            44567788899999987654211    1222 355666655 4777765  689999999998 699999965

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=96.81  E-value=0.012  Score=53.37  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg-~~~t~~ai~   87 (291)
T 3a5f_A           19 VDFDKLSELIEWHIKSKTDAIIVCG----------TTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG-SNNTAASIA   87 (291)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHHHH
Confidence            577788888887655 999998864          234444445666677777776655  588887774 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCC---HHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAK---WGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~---~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.+++.|+|++.+..-    .|..+.+   ++.++.|.+.+++||+ +|     |---+++.+.++.
T Consensus        88 la~~a~~~Gadavlv~~P----~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La  152 (291)
T 3a5f_A           88 MSKWAESIGVDGLLVITP----YYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELC  152 (291)
T ss_dssp             HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHH
Confidence            999999999999987632    2323322   3334566677788875 45     4445777777765

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=96.78  E-value=0.0024  Score=59.75  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ....+.++.+.++|+|.|+++.-..   + ...-|+.++.+++.. ++||++ |+|.|+++++.+. +.|||+|.+|
T Consensus        99 ~~~~e~~~~a~~aGvdvI~id~a~G---~-~~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~-~aGaD~I~Vg  169 (361)
T 3r2g_A           99 ENELQRAEALRDAGADFFCVDVAHA---H-AKYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLA-SCGADIIKAG  169 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCC---S-SHHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCC---C-cHhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHH-HcCCCEEEEc
Confidence            5678899999999999999964211   1 122378899999876 788887 6799999999999 6999999985

>3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A

Probab=96.78  E-value=0.022  Score=54.92  Aligned_cols=123  Identities=12%  Similarity=0.094  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHh-h-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMV-C-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+|+++++.++.. . .||..+-+..|.+               +++.-.+.++++|++. ++.+.+-..-+|+..++++
T Consensus       181 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~~  245 (450)
T 3mzn_A          181 MTPEAVANLARAAYDRYGFKDFKLKGGVL---------------RGEEEADCIRALHEAFPEARLALDPNGAWKLDEAVR  245 (450)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTCBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence            5788888877764 4 4999999987642               2334456678888775 5567777766899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCC----HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAK----WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +++.+++. +.+|-       |. ..+-|    ++.++++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus       246 ~~~~L~~~-i~~iE-------eP-~~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~~  310 (450)
T 3mzn_A          246 VLEPIKHL-LSYAE-------DP-CGQEGGFSGRETMAEFKKRTGLPTATNMIATDYKQLQYAVQLNSVDIPLA  310 (450)
T ss_dssp             HHGGGGGG-CSEEE-------SS-BCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBC
T ss_pred             HHHHhhhc-cceee-------CC-CCcccccchHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence            99999987 76652       21 22334    68889999999999988667888999999996556787754

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.77  E-value=0.0035  Score=56.45  Aligned_cols=79  Identities=22%  Similarity=0.297  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+..++|+.+++.|+++|.|..-..  .+.|  ..+.+..+++.+++||+..+.|.+..++..+. ..|||+|.++-+.+
T Consensus        72 ~~p~~~A~~y~~~GA~~isvltd~~--~f~G--s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~-~~GAD~VlLi~a~l  146 (272)
T 3qja_A           72 ADPAKLAQAYQDGGARIVSVVTEQR--RFQG--SLDDLDAVRASVSIPVLRKDFVVQPYQIHEAR-AHGADMLLLIVAAL  146 (272)
T ss_dssp             -CHHHHHHHHHHTTCSEEEEECCGG--GHHH--HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEEEGGGS
T ss_pred             CCHHHHHHHHHHcCCCEEEEecChh--hcCC--CHHHHHHHHHhCCCCEEECccccCHHHHHHHH-HcCCCEEEEecccC
Confidence            4688999999999999999863211  1111  35788899999999999999999999999998 69999999998877


Q ss_pred             cCcc
Q 020428          237 WNAS  240 (326)
Q Consensus       237 ~~P~  240 (326)
                      .+..
T Consensus       147 ~~~~  150 (272)
T 3qja_A          147 EQSV  150 (272)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6443

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=96.72  E-value=0.043  Score=49.92  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC-C-CC------h-----HHHHHHHHHHHHcCCcEEEEeecccCCCCC----C
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL-L-KS------S-----QDTVELARRIEKTGVSALAVHGRKVADRPR----D  187 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~~------~-----~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~----~  187 (326)
                      ..|-+..+++++..... ++.|-.-+.. | .+      .     .++.+..+.+++.|+|.|.+.=.|..+.|.    .
T Consensus       111 eeNi~~Tk~vv~~ah~~-gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p  189 (307)
T 3n9r_A          111 EENLELTSKVVKMAHNA-GVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEP  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSC
T ss_pred             HHHHHHHHHHHHHHHHc-CCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCC
Confidence            34555666666666543 5555554433 1 11      0     134555566778999999876555555553    3


Q ss_pred             cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          188 PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       188 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      ..+++.+++|++.+++|++.-||=.-+++..+++.++|-+
T Consensus       190 ~Ld~~~L~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~gg~  229 (307)
T 3n9r_A          190 KLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGD  229 (307)
T ss_dssp             CCCHHHHHHHHHHHCSCEEESSCCCCCHHHHHHHHHTTCC
T ss_pred             ccCHHHHHHHHhcCCCCeEEeCCCCcchHHHHHHHHhcCc
Confidence            4689999999887899999999887788888888777643

>3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A

Probab=96.72  E-value=0.017  Score=55.95  Aligned_cols=124  Identities=14%  Similarity=0.094  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHh-h-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMV-C-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~-~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~  160 (326)
                      +.+|+++++.|+.. . .||..+-+..|.+               +++.-.+.++++|++. ++.+.+-..-+|+..+++
T Consensus       198 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai  262 (470)
T 3p0w_A          198 AMTPAAIARLAEAATERYGFADFKLKGGVM---------------PGAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAI  262 (470)
T ss_dssp             BCSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTBBCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEEeCCCC---------------CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHH
Confidence            35788888877754 4 4999999987642               2333456678888775 566777776689999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCC----HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAK----WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++++.+++. +.+|       +|. ..+-|    ++.++++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus       263 ~~~~~Le~~-l~~i-------EeP-~~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~  328 (470)
T 3p0w_A          263 ALCKGQGHL-VAYA-------EDP-CGPEAGYSGREVMAEFKRATGIPTATNMIATDWRQMGHAVQLHAVDIPLA  328 (470)
T ss_dssp             HHHTTCTTT-CSEE-------ESC-BCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHTTCCSEEBC
T ss_pred             HHHHhcccc-ceee-------cCC-CChhhccchHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence            999999887 6665       121 23334    68889999999999988767888999999996555777654

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=96.68  E-value=0.0064  Score=55.36  Aligned_cols=84  Identities=19%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHcCCcEEEEeec-ccCCCCC----CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          159 TVELARRIEKTGVSALAVHGR-KVADRPR----DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r-~~~~~~~----~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ..+.|+.++++|++.|.+--+ +.+..+.    ...+.+.++++++.+++||++-+++...++++.+. ..|||.| -..
T Consensus        30 ~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~-aaGAD~I-d~s  107 (297)
T 4adt_A           30 NVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILE-ELKVDML-DES  107 (297)
T ss_dssp             SHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHH-HTTCSEE-EEE
T ss_pred             cHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHH-HcCCCEE-EcC
Confidence            458899999999999987621 1222222    23578999999999999999988888888888777 6999999 222


Q ss_pred             chhcCcccccc
Q 020428          234 GALWNASIFSS  244 (326)
Q Consensus       234 ~~l~~P~lf~~  244 (326)
                      ..+..+.+...
T Consensus       108 ~~~~~~~li~~  118 (297)
T 4adt_A          108 EVLTMADEYNH  118 (297)
T ss_dssp             TTSCCSCSSCC
T ss_pred             CCCCHHHHHHH
Confidence            22334455443

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=96.66  E-value=0.006  Score=57.21  Aligned_cols=97  Identities=18%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPV  205 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPV  205 (326)
                      +++...+.++.+++.-..++.+-+.  .. .+..+.++.+.++|+|.|+++.-.  + . .+...+.++++++.. ++||
T Consensus        80 s~e~~~~~i~~vk~~~~l~vga~vg--~~-~~~~~~~~~lieaGvd~I~idta~--G-~-~~~~~~~I~~ik~~~p~v~V  152 (366)
T 4fo4_A           80 SIEQQAAQVHQVKISGGLRVGAAVG--AA-PGNEERVKALVEAGVDVLLIDSSH--G-H-SEGVLQRIRETRAAYPHLEI  152 (366)
T ss_dssp             CHHHHHHHHHHHHTTTSCCCEEECC--SC-TTCHHHHHHHHHTTCSEEEEECSC--T-T-SHHHHHHHHHHHHHCTTCEE
T ss_pred             CHHHHHHHHHHHHhcCceeEEEEec--cC-hhHHHHHHHHHhCCCCEEEEeCCC--C-C-CHHHHHHHHHHHHhcCCCce
Confidence            4778888888888753344444332  22 245677889999999999986321  0 1 112246678888886 7888


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++ |.+.|+++++++. +.|||+|.+|
T Consensus       153 i~-G~v~t~e~A~~a~-~aGAD~I~vG  177 (366)
T 4fo4_A          153 IG-GNVATAEGARALI-EAGVSAVKVG  177 (366)
T ss_dssp             EE-EEECSHHHHHHHH-HHTCSEEEEC
T ss_pred             Ee-eeeCCHHHHHHHH-HcCCCEEEEe
Confidence            76 7789999999998 6899999995

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=96.65  E-value=0.028  Score=51.48  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC-CC-C----h----HHHHHHHHHHHHcCCcEEEEeecccCCCCC--C--c--
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL-LK-S----S----QDTVELARRIEKTGVSALAVHGRKVADRPR--D--P--  188 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g~-~----~----~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~--~--  188 (326)
                      ..|-+..+++++..... ++.|-.-+.. |. +    .    .++.+..+.+++.|+|.|.+.=.|..+.|.  +  .  
T Consensus       112 eENi~~Tk~vv~~ah~~-gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~  190 (323)
T 2isw_A          112 DENVRITKEVVAYAHAR-SVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIR  190 (323)
T ss_dssp             HHHHHHHHHHHHHHHTT-TCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----C
T ss_pred             HHHHHHHHHHHHHHHHc-CCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccc
Confidence            34555566666655433 5555444433 11 1    0    235666677778999999876555555554  3  3  


Q ss_pred             CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428          189 AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       189 ~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                      .+++.+++|++.+++|++.-||=.-+++..+++.++|-
T Consensus       191 L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~gg  228 (323)
T 2isw_A          191 LAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGG  228 (323)
T ss_dssp             CCCHHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHhcc
Confidence            57899999999999999999987667777777766653

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=96.65  E-value=0.051  Score=49.09  Aligned_cols=109  Identities=16%  Similarity=0.209  Sum_probs=73.7

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecC--CCC---------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cCCH
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRL--LKS---------SQDTVELARRIEKTGVSALAVHGRKVADRPRD--PAKW  191 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g~~---------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~  191 (326)
                      ..|-+..+++++..... ++.|-.-+..  |.+         ..++.+..+.+++.|+|.|.+.=.|..+.|.+  ..|+
T Consensus       117 eeNi~~Tk~vv~~ah~~-gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~  195 (288)
T 3q94_A          117 EENVETTKKVVEYAHAR-NVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGF  195 (288)
T ss_dssp             HHHHHHHHHHHHHHHTT-TCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCH
T ss_pred             HHHHHHHHHHHHHHHHc-CCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCH
Confidence            34555566666655443 5555554433  111         12355666677789999998765555555543  4589


Q ss_pred             HHHHHHHHhcCCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccch
Q 020428          192 GEIADIVAALSIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       192 ~~i~~i~~~~~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.+++|++.+++|++.-||=.. .+++++++ ..|+.-|=|++.+
T Consensus       196 ~~L~~I~~~v~vpLVlHGgSG~~~e~i~~ai-~~Gv~KiNi~Tdl  239 (288)
T 3q94_A          196 AEMEQVRDFTGVPLVLHGGTGIPTADIEKAI-SLGTSKINVNTEN  239 (288)
T ss_dssp             HHHHHHHHHHCSCEEECCCTTCCHHHHHHHH-HTTEEEEEECHHH
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCCHHHHHHHH-HcCCeEEEEChHH
Confidence            9999999999999998876554 46688888 6898888888764

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=96.64  E-value=0.022  Score=51.58  Aligned_cols=123  Identities=14%  Similarity=0.146  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~   87 (292)
T 2ojp_A           19 VCRASLKKLIDYHVASGTSAIVSVGT----------TGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEAIS   87 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------ccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHHHH
Confidence            477888888887765 9999988642          33344445666677777776655  578887774 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-    .|..+.   -++.++.|.+++++||+ +|     |---+++.+.++.+
T Consensus        88 la~~a~~~Gadavlv~~P----~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~  153 (292)
T 2ojp_A           88 LTQRFNDSGIVGCLTVTP----YYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAK  153 (292)
T ss_dssp             HHHHTTTSSCSEEEEECC----CSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHc
Confidence            999999999999987633    222232   24556788888899986 45     43457888888763

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=96.63  E-value=0.029  Score=50.43  Aligned_cols=116  Identities=18%  Similarity=0.141  Sum_probs=79.8

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC-cEEEEe-ecccC-CCCCCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV-SALAVH-GRKVA-DRPRDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~-d~i~vh-~r~~~-~~~~~~~~~~~i~~  196 (326)
                      -|+..+.+..++.++-     .++.||.+|.....+.++....+..+...|. +.+.+| |-+.- .......|+..+..
T Consensus       127 Igs~~~~n~~ll~~~a-----~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~  201 (276)
T 1vs1_A          127 IGARNMQNFPLLREVG-----RSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAV  201 (276)
T ss_dssp             ECGGGTTCHHHHHHHH-----HHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHH
T ss_pred             ECcccccCHHHHHHHH-----ccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHH
Confidence            4577788887766653     3589999999876678888888888999998 455566 44222 22345678898999


Q ss_pred             HHHhcCCcEEE-eC---CCCC--HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          197 IVAALSIPVIA-NG---DVFE--YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       197 i~~~~~iPVi~-nG---gI~s--~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +++..++||++ ..   |.++  ..-....+ ..||+|+||=+-+--+..+
T Consensus       202 lk~~~~lpVi~dssH~~g~~~~~~~~~~aAv-a~Ga~Gl~IE~H~~~d~a~  251 (276)
T 1vs1_A          202 LKEATHLPVIVDPSHPAGRRSLVPALAKAGL-AAGADGLIVEVHPNPEEAL  251 (276)
T ss_dssp             HHHHBSSCEEECCHHHHCSGGGHHHHHHHHH-HTTCSEEEEEBCSSGGGCS
T ss_pred             HHHHhCCCEEEeCCCCCCccchHHHHHHHHH-HcCCCEEEEEecCCcccCC
Confidence            99988999975 22   3332  33344455 5899999998765444333

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.60  E-value=0.014  Score=50.01  Aligned_cols=82  Identities=16%  Similarity=0.265  Sum_probs=63.8

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE-EEeCCCCCHHHHHHHH
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV-IANGDVFEYDDFQRIK  221 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV-i~nGgI~s~~d~~~~l  221 (326)
                      ..|+..-++ +.+.++..+.++.+.+.|++.|.+...+       +...+.++++++..++|+ ++.|++.+.+++..++
T Consensus         6 ~~~i~~~i~-~~d~~~~~~~~~~~~~~G~~~i~l~~~~-------~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~   77 (212)
T 2v82_A            6 KLPLIAILR-GITPDEALAHVGAVIDAGFDAVEIPLNS-------PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALA   77 (212)
T ss_dssp             SSCEEEECT-TCCHHHHHHHHHHHHHHTCCEEEEETTS-------TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHH
T ss_pred             CCCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHH
Confidence            456666555 4677889999999999999999985432       233577888887777764 4678899999999888


Q ss_pred             HhcCCcEEEecc
Q 020428          222 TAAGASSVMAAR  233 (326)
Q Consensus       222 ~~~Gad~VmiGr  233 (326)
                       ..|||+|.+|.
T Consensus        78 -~~Gad~V~~~~   88 (212)
T 2v82_A           78 -RMGCQLIVTPN   88 (212)
T ss_dssp             -HTTCCEEECSS
T ss_pred             -HcCCCEEEeCC
Confidence             69999998775

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=96.60  E-value=0.045  Score=47.67  Aligned_cols=119  Identities=10%  Similarity=0.032  Sum_probs=72.8

Q ss_pred             CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec
Q 020428          100 DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       100 ~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      |++.|-|+.+.-     +..        ...+.+.++...+. +.-+.+-+.      +..+. +.+...+.+.|-+-+|
T Consensus        88 Ga~~VllghseR-----R~~--------~~e~~~k~~~A~~~-GL~~ivcVg------e~~e~-~~~~~~~~~iIayep~  146 (225)
T 1hg3_A           88 GAVGTLLNHSEN-----RMI--------LADLEAAIRRAEEV-GLMTMVCSN------NPAVS-AAVAALNPDYVAVEPP  146 (225)
T ss_dssp             TCCEEEESCGGG-----CCB--------HHHHHHHHHHHHHH-TCEEEEEES------SHHHH-HHHHTTCCSEEEECCT
T ss_pred             CCCEEEECcchh-----cCC--------HHHHHHHHHHHHHC-CCEEEEEeC------CHHHH-HHHhcCCCCEEEEeCh
Confidence            888888865321     111        11244555554433 555555553      22222 4456667787778777


Q ss_pred             ccCCCCC--CcCCHHHH---HHH-HHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          180 KVADRPR--DPAKWGEI---ADI-VAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       180 ~~~~~~~--~~~~~~~i---~~i-~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ...+...  ..+..+.+   .++ ++.. +++|++.|||.+.+++..+. ..|+||+.||++++.-++
T Consensus       147 waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~-~~~vDG~LVG~a~l~a~~  213 (225)
T 1hg3_A          147 ELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAI-ELGTVGVLLASGVTKAKD  213 (225)
T ss_dssp             TTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTCSS
T ss_pred             hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHH-hCCCCEEEeCHHHHCCcC
Confidence            6554320  13333333   222 2222 68999999999999999888 689999999999887554

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=96.59  E-value=0.022  Score=49.90  Aligned_cols=96  Identities=22%  Similarity=0.259  Sum_probs=73.9

Q ss_pred             HHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC
Q 020428          133 DILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF  212 (326)
Q Consensus       133 ~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~  212 (326)
                      ++++.+.+.   +|..=+|. .+.++..++++.+.+.|++.|-+.-++       +...+.|+++++.++-.+++.|.|.
T Consensus        26 ~~~~~l~~~---~vv~Vir~-~~~~~a~~~a~al~~gGi~~iEvt~~t-------~~a~e~I~~l~~~~~~~~iGaGTVl   94 (232)
T 4e38_A           26 TINNQLKAL---KVIPVIAI-DNAEDIIPLGKVLAENGLPAAEITFRS-------DAAVEAIRLLRQAQPEMLIGAGTIL   94 (232)
T ss_dssp             HHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEECCC
T ss_pred             HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CCHHHHHHHHHHhCCCCEEeECCcC
Confidence            455555443   45544553 567889999999999999999997664       3347889999998866899999999


Q ss_pred             CHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          213 EYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +.++++.++ ..||++|+..-   .+|.+..
T Consensus        95 t~~~a~~Ai-~AGA~fIvsP~---~~~~vi~  121 (232)
T 4e38_A           95 NGEQALAAK-EAGATFVVSPG---FNPNTVR  121 (232)
T ss_dssp             SHHHHHHHH-HHTCSEEECSS---CCHHHHH
T ss_pred             CHHHHHHHH-HcCCCEEEeCC---CCHHHHH
Confidence            999999999 69999998753   3554443

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=96.58  E-value=0.021  Score=51.71  Aligned_cols=114  Identities=12%  Similarity=0.123  Sum_probs=74.4

Q ss_pred             CCCEEE----EccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE----ecCC------CChHHHHHHHHH
Q 020428          100 DVAAID----INMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK----IRLL------KSSQDTVELARR  165 (326)
Q Consensus       100 ~~d~id----lN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK----~r~g------~~~~~~~e~a~~  165 (326)
                      |+|++-    +|.|.|...           ...+.+.+++++..+ .++|+.+=    -|.|      .+++.....++.
T Consensus       141 GADaV~~l~~i~~Gs~~e~-----------~~l~~la~vv~ea~~-~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRi  208 (307)
T 3fok_A          141 GVDFAKTLVRINLSDAGTA-----------PTLEATAHAVNEAAA-AQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAI  208 (307)
T ss_dssp             TCCEEEEEEEECTTCTTHH-----------HHHHHHHHHHHHHHH-TTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEEEEECCCChhHH-----------HHHHHHHHHHHHHHH-cCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHH
Confidence            888755    677766441           223444555555533 38887663    1211      346667777888


Q ss_pred             HHHcCCc----EEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC--CHHHHHHHHH---h-cCCcEEEeccch
Q 020428          166 IEKTGVS----ALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF--EYDDFQRIKT---A-AGASSVMAARGA  235 (326)
Q Consensus       166 l~~~G~d----~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~--s~~d~~~~l~---~-~Gad~VmiGr~~  235 (326)
                      ..+.|+|    .|-+-       |.     +.++++.+.+.+||+..||=.  +.+++.++.+   + .|+.|+.+||-+
T Consensus       209 AaELGADs~~tivK~~-------y~-----e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNI  276 (307)
T 3fok_A          209 AAGLGNDSSYTWMKLP-------VV-----EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTL  276 (307)
T ss_dssp             HHTCSSCCSSEEEEEE-------CC-----TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTT
T ss_pred             HHHhCCCcCCCEEEeC-------Cc-----HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhh
Confidence            8999999    88662       11     346888888899998877765  4555554432   4 699999999986


Q ss_pred             hc
Q 020428          236 LW  237 (326)
Q Consensus       236 l~  237 (326)
                      +.
T Consensus       277 fQ  278 (307)
T 3fok_A          277 LY  278 (307)
T ss_dssp             SS
T ss_pred             cc
Confidence            55

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=96.57  E-value=0.025  Score=51.49  Aligned_cols=125  Identities=17%  Similarity=0.109  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+.. .+..++++
T Consensus        22 iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~   90 (300)
T 3eb2_A           22 VRADVMGRLCDDLIQAGVHGLTPLG----------STGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS-TSVADAVA   90 (300)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCBBTTS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE-SSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHH
Confidence            477888888887655 889886653          234444445666677777776665  5788886642 56889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      +++.++++|+|++.+..-.-. ..+...-++.++.|.+.+++||+ +|     |--.+++.+.++.
T Consensus        91 la~~a~~~Gadavlv~~P~y~-~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La  155 (300)
T 3eb2_A           91 QAKLYEKLGADGILAILEAYF-PLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA  155 (300)
T ss_dssp             HHHHHHHHTCSEEEEEECCSS-CCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHH
Confidence            999999999999987543211 01111224566788888899986 55     3335677777775

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=96.55  E-value=0.17  Score=45.44  Aligned_cols=139  Identities=12%  Similarity=0.127  Sum_probs=96.9

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL  152 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~  152 (326)
                      .+.+++.|.+.+.+++...++.+. .++|.||+=..+=..           ..+.+.+.+.+..+|+.+ ++|+.+-+|.
T Consensus        39 ~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~-----------~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt  107 (276)
T 3o1n_A           39 APKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFAN-----------VTTAESVLEAAGAIREIITDKPLLFTFRS  107 (276)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTT-----------TTCHHHHHHHHHHHHHHCCSSCEEEECCB
T ss_pred             CcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccc-----------cCcHHHHHHHHHHHHHhcCCCCEEEEEEE
Confidence            345889999999999998888887 499999996532110           123477889999999887 8999998887


Q ss_pred             ----C---CChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHHH---HhcCCcEEEe----CCCCCHHHH
Q 020428          153 ----L---KSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADIV---AALSIPVIAN----GDVFEYDDF  217 (326)
Q Consensus       153 ----g---~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i~---~~~~iPVi~n----GgI~s~~d~  217 (326)
                          |   .+.+...++.+.+.+.| +|+|.|--..         +-+.++++.   +..++.||++    .+--+.+++
T Consensus       108 ~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~---------~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el  178 (276)
T 3o1n_A          108 AKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFT---------GDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEI  178 (276)
T ss_dssp             GGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGG---------CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHH
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcC---------CHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHH
Confidence                2   24567888888888899 9999996432         124455554   3457888876    233344555


Q ss_pred             HHHH---HhcCCcEEEecc
Q 020428          218 QRIK---TAAGASSVMAAR  233 (326)
Q Consensus       218 ~~~l---~~~Gad~VmiGr  233 (326)
                      ...+   ...|||.|=+..
T Consensus       179 ~~~~~~~~~~GaDIvKia~  197 (276)
T 3o1n_A          179 VQRLRKMQELGADIPKIAV  197 (276)
T ss_dssp             HHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEEe
Confidence            5443   246888775553

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=96.54  E-value=0.018  Score=51.38  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             cccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE-Ee-e-cccCCCCCCcCCHHHHHHH
Q 020428          121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA-VH-G-RKVADRPRDPAKWGEIADI  197 (326)
Q Consensus       121 G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~-vh-~-r~~~~~~~~~~~~~~i~~i  197 (326)
                      |+..+.+..++.++-    + .+.||.+|.....+.++....+..+...|...++ +| | ++.........|+..+..+
T Consensus       113 ga~~~~n~~ll~~~a----~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~l  187 (262)
T 1zco_A          113 GARNSQNFELLKEVG----K-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVV  187 (262)
T ss_dssp             CGGGTTCHHHHHHHT----T-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred             CcccccCHHHHHHHH----h-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHH
Confidence            456677777665543    3 6999999998766888999999999999986555 45 2 1222223345677889999


Q ss_pred             HHhcCCcEEEe----CCCCC--HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          198 VAALSIPVIAN----GDVFE--YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       198 ~~~~~iPVi~n----GgI~s--~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      ++..++||++.    +|.+.  +.-+.... ..||+|+||=+-+--+..+
T Consensus       188 k~~~~~pVi~d~sH~~g~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~~d~al  236 (262)
T 1zco_A          188 KELSHLPIIVDPSHPAGRRSLVIPLAKAAY-AIGADGIMVEVHPEPEKAL  236 (262)
T ss_dssp             HHHBSSCEEECSSTTTCSGGGHHHHHHHHH-HTTCSEEEEEBCSSGGGCS
T ss_pred             HhhhCCCEEEEcCCCCCccchHHHHHHHHH-HcCCCEEEEEecCCccccC
Confidence            98889999653    23322  12244455 5899999998865444444

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=96.54  E-value=0.055  Score=49.52  Aligned_cols=125  Identities=12%  Similarity=0.092  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+ .+||.+-+. ..+..+++++
T Consensus        26 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg-~~~t~~ai~l   94 (313)
T 3dz1_A           26 IDDVSIDRLTDFYAEVGCEGVTVLG----------ILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVS-APGFAAMRRL   94 (313)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEEST----------GGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECC-CSSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEeCc----------cCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecC-CCCHHHHHHH
Confidence            477888888887765 999998763          234444445666677777776665 678888653 2578899999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--CcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--IPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      ++.+++.|+|++.+..-.  ...+...-++.++.|.+.++  +||+ +|     |---+++.+.++.+
T Consensus        95 a~~A~~~Gadavlv~~P~--~~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~  160 (313)
T 3dz1_A           95 ARLSMDAGAAGVMIAPPP--SLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVM  160 (313)
T ss_dssp             HHHHHHHTCSEEEECCCT--TCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECCCC--CCCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHH
Confidence            999999999999885321  11111122456778888888  9987 43     55567888888774

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=96.51  E-value=0.029  Score=51.53  Aligned_cols=124  Identities=14%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+. +.+..++++
T Consensus        29 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~   97 (318)
T 3qfe_A           29 LDLASQERYYAYLARSGLTGLVILG----------TNAEAFLLTREERAQLIATARKAVGPDFPIMAGVG-AHSTRQVLE   97 (318)
T ss_dssp             ECHHHHHHHHHHHHTTTCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECC-CSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHHHH
Confidence            367788888887766 999998864          234444445666677777777665  588888663 357889999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcC----CHHHHHHHHHhcCCcEE-Ee-----CCC-CCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPA----KWGEIADIVAALSIPVI-AN-----GDV-FEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~----~~~~i~~i~~~~~iPVi-~n-----GgI-~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..=.   .|..|.    -+++++.|.+.+++||+ +|     .|+ -+++.+.++.+
T Consensus        98 la~~a~~~Gadavlv~~P~---y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~  166 (318)
T 3qfe_A           98 HINDASVAGANYVLVLPPA---YFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIAR  166 (318)
T ss_dssp             HHHHHHHHTCSEEEECCCC---C---CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCc---ccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHh
Confidence            9999999999999875321   111222    25567888888899986 44     244 57888888774

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=96.51  E-value=0.043  Score=50.21  Aligned_cols=123  Identities=11%  Similarity=0.148  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        25 iD~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg-~~~t~~ai~   93 (311)
T 3h5d_A           25 INFDAIPALIEHLLAHHTDGILLAGT----------TAESPTLTHDEELELFAAVQKVVNGRVPLIAGVG-TNDTRDSIE   93 (311)
T ss_dssp             BCTTHHHHHHHHHHHTTCCCEEESST----------TTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHHHH
Confidence            356677777777655 9999988742          33444445667777888887766  578888663 256789999


Q ss_pred             HHHHHHHcCC-cEEEEeecccCCCCCCcC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGV-SALAVHGRKVADRPRDPA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~-d~i~vh~r~~~~~~~~~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+ |++.+..-    .|..+.   -+++++.|.+++++||+ +|     |--.+++.+.++.+
T Consensus        94 la~~A~~~Ga~davlv~~P----~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~  160 (311)
T 3h5d_A           94 FVKEVAEFGGFAAGLAIVP----YYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLAD  160 (311)
T ss_dssp             HHHHHHHSCCCSEEEEECC----CSSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred             HHHHHHhcCCCcEEEEcCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence            9999999997 99987642    122222   24566788888899986 55     54567888777763

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=96.51  E-value=0.073  Score=48.37  Aligned_cols=103  Identities=14%  Similarity=0.130  Sum_probs=70.2

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC-C--CCh----------HHHHHHHHHHHHcCCcEEEEeecccCCCCC----
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL-L--KSS----------QDTVELARRIEKTGVSALAVHGRKVADRPR----  186 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g--~~~----------~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~----  186 (326)
                      +..|-+..+++++..... ++.|-.-+.. |  .+.          .++.+..+.+++.|+|.|.+.=.|..+.|.    
T Consensus       108 ~eENi~~Tk~vv~~ah~~-gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~  186 (305)
T 1rvg_A          108 FETNVRETRRVVEAAHAV-GVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGR  186 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSS
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCC
Confidence            344555666666666543 5555554443 1  111          235666677778999999876555555554    


Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      ...+++.+++|.+.+++|++.-||=.=++++.+++.++|-+
T Consensus       187 p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~  227 (305)
T 1rvg_A          187 PFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGE  227 (305)
T ss_dssp             CCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred             CccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccc
Confidence            34689999999999999999999876688888888777744

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=96.49  E-value=0.0047  Score=58.03  Aligned_cols=103  Identities=17%  Similarity=0.306  Sum_probs=65.4

Q ss_pred             ccCChHHHHHHHHHHhh-cccCcEEEEecC----C-CChHHHHHHHHHHHHcCCcEEEEeecccC--CCCCCcC-----C
Q 020428          124 LLSKPELIHDILTMLKR-NLDVPVTCKIRL----L-KSSQDTVELARRIEKTGVSALAVHGRKVA--DRPRDPA-----K  190 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~-~~~~pv~vK~r~----g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~-----~  190 (326)
                      .+++|+..... +.+++ +.+.|+...+..    + ++.+...+.++.+   +++++.+|=-...  -...+..     .
T Consensus       100 ~l~~~~~~~s~-~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~~---~a~al~Ihln~~~~~~~p~g~~~~~~~~  175 (368)
T 3vkj_A          100 AIEKAEARESF-AIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMI---EADAIAVHLNPAQEVFQPEGEPEYQIYA  175 (368)
T ss_dssp             HHHCGGGSHHH-HHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHHT---TCSEEEEECCHHHHHHSSSCCCBCBTHH
T ss_pred             ccCCHHHHhhH-HHHHHhCcCcceecCcCeeecCCCCCHHHHHHHHHHh---cCCCeEEEecchhhhhCCCCCchhhHHH
Confidence            44567654443 33342 347788877765    4 6655544444444   6666666622110  0011222     4


Q ss_pred             HHHHHHHHHhcCCcEEEe--CCCCCHHHHHHHHHhcCCcEEEe
Q 020428          191 WGEIADIVAALSIPVIAN--GDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       191 ~~~i~~i~~~~~iPVi~n--GgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.++.+++.+++||++=  |+-.|++++..+. +.|+|+|.+
T Consensus       176 ~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~-~aGad~I~V  217 (368)
T 3vkj_A          176 LEKLRDISKELSVPIIVKESGNGISMETAKLLY-SYGIKNFDT  217 (368)
T ss_dssp             HHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHH-HTTCCEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-hCCCCEEEE
Confidence            678899999999999984  5557899999888 699999998

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=96.49  E-value=0.046  Score=47.63  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec
Q 020428          100 DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       100 ~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      |++.|-|+.+.-..     .        ...+.+.++...+. +.-+.+-+.      +..+. +.+...+.+.|-+-+|
T Consensus        85 Ga~~VllghseRR~-----~--------~~e~~~k~~~A~~~-GL~~ivcVg------e~~e~-~~~~~~~~~iIayep~  143 (226)
T 1w0m_A           85 GGSGVILNHSEAPL-----K--------LNDLARLVAKAKSL-GLDVVVCAP------DPRTS-LAAAALGPHAVAVEPP  143 (226)
T ss_dssp             TCCEEEECCTTSCC-----B--------HHHHHHHHHHHHHT-TCEEEEEES------SHHHH-HHHHHTCCSEEEECCG
T ss_pred             CCCEEEEeeeeccC-----C--------HHHHHHHHHHHHHC-CCEEEEEeC------CHHHH-HHHhcCCCCEEEEcCh
Confidence            89999987543211     1        12245555555443 555555553      22222 4456678888888777


Q ss_pred             ccCCCCC--CcCCHHHHHH----HHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          180 KVADRPR--DPAKWGEIAD----IVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       180 ~~~~~~~--~~~~~~~i~~----i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ...+...  ..+..+.+.+    +++.. +++|++.|||.+.+++..+. ..|+||+.||++++.-++
T Consensus       144 waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~-~~giDG~LVG~a~l~a~~  210 (226)
T 1w0m_A          144 ELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAAL-RLGTRGVLLASAAVKAKD  210 (226)
T ss_dssp             GGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHTCSS
T ss_pred             hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHH-hCCCCEEEECHHHHCCcC
Confidence            6654320  1334443332    22222 68999999999999999888 689999999999887554

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=96.49  E-value=0.022  Score=52.86  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             cccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC--CcC----CHHHHHHHHHhcCCcEEEe--CCCC
Q 020428          141 NLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR--DPA----KWGEIADIVAALSIPVIAN--GDVF  212 (326)
Q Consensus       141 ~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--~~~----~~~~i~~i~~~~~iPVi~n--GgI~  212 (326)
                      ..+.|+.+.+..+.+.+.   +.+.++++|+|+|.+|.....+..+  +..    .++.++++++.+++||+.-  |...
T Consensus       114 ~~~~pv~~~i~~~~~~~~---~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~  190 (349)
T 1p0k_A          114 NPNGLIFANLGSEATAAQ---AKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGM  190 (349)
T ss_dssp             CSSSCEEEEEETTCCHHH---HHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCC
T ss_pred             CCCceeEEeecCCCCHHH---HHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            358899988876666543   4566788999999998764332211  111    2578899999899999875  5557


Q ss_pred             CHHHHHHHHHhcCCcEEEec
Q 020428          213 EYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.+++..+. +.|+|+|.+.
T Consensus       191 ~~~~a~~a~-~~Gad~I~v~  209 (349)
T 1p0k_A          191 SKASAGKLY-EAGAAAVDIG  209 (349)
T ss_dssp             CHHHHHHHH-HHTCSEEEEE
T ss_pred             CHHHHHHHH-HcCCCEEEEc
Confidence            899998888 6899999994

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=96.49  E-value=0.02  Score=51.92  Aligned_cols=116  Identities=15%  Similarity=0.095  Sum_probs=76.8

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-cCCHHHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-PAKWGEIADIV  198 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~~~~~~i~~i~  198 (326)
                      .|+..+.+.+++++    +. .++.||.+|....-+.++....+..+...|...+++.-|...-.|.. ..|+..+..++
T Consensus       114 IgA~~~~n~~Ll~~----~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~~y~~~~~dl~~i~~lk  188 (292)
T 1o60_A          114 LPAFLARQTDLVEA----MA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDMLGFSVMK  188 (292)
T ss_dssp             ECGGGTTCHHHHHH----HH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHH
T ss_pred             ECcccccCHHHHHH----HH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHH
Confidence            35777888875444    43 46899999998765777888888999999986666554543222211 15888899998


Q ss_pred             Hhc-CCcEEE-----------eCCCCCH------HHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          199 AAL-SIPVIA-----------NGDVFEY------DDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       199 ~~~-~iPVi~-----------nGgI~s~------~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +.. ++||++           .|+-...      .-+.... ..||+|+||=+=+--+..+
T Consensus       189 ~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAv-a~Ga~Gl~IE~H~~~d~al  248 (292)
T 1o60_A          189 KASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGL-AVGIAGLFLEAHPNPNQAK  248 (292)
T ss_dssp             HHTTSCCEEEEHHHHCC------------CTTHHHHHHHHH-HHCCSEEEEEEESSGGGCS
T ss_pred             hhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHH-HcCCCEEEEEecCCcccCC
Confidence            887 899998           1222222      3333445 5899999998765444444

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=96.47  E-value=0.071  Score=46.30  Aligned_cols=134  Identities=10%  Similarity=0.014  Sum_probs=84.0

Q ss_pred             cEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--
Q 020428           77 HVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--  153 (326)
Q Consensus        77 p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g--  153 (326)
                      +++.-+ ++.-|.....+++.+.+. |.+.+|.....               ++-+...++...+. +.-|++=++..  
T Consensus        55 ~VflDlK~~DI~nTv~~~~~~~~~~-d~vTVh~~~G~---------------~~~~~~a~~~~~~~-~~~v~vLts~s~~  117 (222)
T 4dbe_A           55 EIIVDFKLADIGYIMKSIVERLSFA-NSFIAHSFIGV---------------KGSLDELKRYLDAN-SKNLYLVAVMSHE  117 (222)
T ss_dssp             EEEEEEEECSCHHHHHHHHTTCTTC-SEEEEESTTCT---------------TTTHHHHHHHHHHT-TCEEEEEEECSST
T ss_pred             eEEEEeeecchHHHHHHHHHHHHhC-CEEEEEcCcCc---------------HHHHHHHHHHHHhc-CCcEEEEEeCCCc
Confidence            677776 455566767677666555 99999853220               11233334443322 33455434432  


Q ss_pred             -CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHH-HHHHHHHhcCCcEEEe
Q 020428          154 -KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYD-DFQRIKTAAGASSVMA  231 (326)
Q Consensus       154 -~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~-d~~~~l~~~Gad~Vmi  231 (326)
                       +.......+++..+++|++++++.+.          .-+.++.+++.++-.++..+||+-.. +..+++ ..|+|.++|
T Consensus       118 ~~~~~~~~~~a~~a~~~g~~GvV~sat----------~p~e~~~ir~~~~~~~~vtPGI~~~g~tp~~a~-~~Gad~iVV  186 (222)
T 4dbe_A          118 GWSTLFADYIKNVIREISPKGIVVGGT----------KLDHITQYRRDFEKMTIVSPGMGSQGGSYGDAV-CAGADYEII  186 (222)
T ss_dssp             TCCCTTHHHHHHHHHHHCCSEEEECTT----------CHHHHHHHHHHCTTCEEEECCBSTTSBCTTHHH-HHTCSEEEE
T ss_pred             chHHHHHHHHHHHHHHhCCCEEEECCC----------CHHHHHHHHHhCCCCEEEcCCcccCccCHHHHH-HcCCCEEEE
Confidence             22223477899999999999988542          12456677776644678889997421 455667 589999999


Q ss_pred             ccchhcC
Q 020428          232 ARGALWN  238 (326)
Q Consensus       232 Gr~~l~~  238 (326)
                      ||+++..
T Consensus       187 GR~I~~A  193 (222)
T 4dbe_A          187 GRSIYNA  193 (222)
T ss_dssp             CHHHHTS
T ss_pred             CHHhcCC
Confidence            9998874

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=96.45  E-value=0.012  Score=53.12  Aligned_cols=93  Identities=9%  Similarity=0.079  Sum_probs=62.2

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHh-cCCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAA-LSIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~-~~iPVi~n  208 (326)
                      .+.++++++.. ..++.|-+.       +.+.++.+.++|+|.|.+|..+.       .+. +.++.++.. .++++.++
T Consensus       182 ~~av~~ar~~~~~~~I~Vev~-------t~eea~eal~aGaD~I~LDn~~~-------~~~~~~v~~l~~~~~~v~ieaS  247 (284)
T 1qpo_A          182 VDALRAVRNAAPDLPCEVEVD-------SLEQLDAVLPEKPELILLDNFAV-------WQTQTAVQRRDSRAPTVMLESS  247 (284)
T ss_dssp             HHHHHHHHHHCTTSCEEEEES-------SHHHHHHHGGGCCSEEEEETCCH-------HHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEECCCCH-------HHHHHHHHHhhccCCCeEEEEE
Confidence            34556665554 225666553       24566667779999999997532       111 233334331 26899999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ||| |++.+.++. .+|+|++.+|+....-|+
T Consensus       248 GGI-t~~~i~~~a-~tGVD~isvG~l~~~a~~  277 (284)
T 1qpo_A          248 GGL-SLQTAATYA-ETGVDYLAVGALTHSVRV  277 (284)
T ss_dssp             SSC-CTTTHHHHH-HTTCSEEECGGGTSSBCC
T ss_pred             CCC-CHHHHHHHH-hcCCCEEEECHHHcCCCC
Confidence            999 488898888 699999999986665554

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=96.45  E-value=0.027  Score=52.35  Aligned_cols=116  Identities=15%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEE--eecccCCCC-CCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAV--HGRKVADRP-RDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~v--h~r~~~~~~-~~~~~~~~i~~  196 (326)
                      -|+..+.+.+++.++    . ..+.||.+|....-+.++....+..+...|..-+++  +|-+.-..| ....|+..+..
T Consensus       195 IgAr~~~n~~LL~~v----a-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~  269 (350)
T 1vr6_A          195 IGARNAQNFRLLSKA----G-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPI  269 (350)
T ss_dssp             ECGGGTTCHHHHHHH----H-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHH
T ss_pred             ECcccccCHHHHHHH----H-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHH
Confidence            344455555544443    2 358999999987667888888889999999866655  333222233 45678888999


Q ss_pred             HHHhcCCcEEE-e---CCCCC--HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          197 IVAALSIPVIA-N---GDVFE--YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       197 i~~~~~iPVi~-n---GgI~s--~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +++..++||++ .   +|-+.  ..-....+ ..||+|+||=+-+--+-.+
T Consensus       270 lk~~~~lpVi~dssHs~G~~~~v~~~a~AAv-A~GA~Gl~IE~H~~pd~al  319 (350)
T 1vr6_A          270 IRKESHLPILVDPSHSGGRRDLVIPLSRAAI-AVGAHGIIVEVHPEPEKAL  319 (350)
T ss_dssp             HHHHBSSCEEECHHHHHCSGGGHHHHHHHHH-HHTCSEEEEEBCSCGGGCS
T ss_pred             HHHhhCCCEEEeCCCCCcccchHHHHHHHHH-HhCCCEEEEEecCCcccCC
Confidence            99988999976 2   23322  33344455 4799999998765444444

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=96.44  E-value=0.01  Score=55.57  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=60.2

Q ss_pred             ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC--CCCCCcCC---H-HHHHHHHHhcCCcEEEeCCC---C
Q 020428          142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA--DRPRDPAK---W-GEIADIVAALSIPVIANGDV---F  212 (326)
Q Consensus       142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~---~-~~i~~i~~~~~iPVi~nGgI---~  212 (326)
                      .+.++..-+......   .+..+.++..|+|++.+|-....  ....+..+   | +.++++++.+++||++=| |   .
T Consensus       143 P~~~~ianig~~~~~---e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~  218 (365)
T 3sr7_A          143 PHLLLATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKE-VGFGM  218 (365)
T ss_dssp             --CCEEEEEETTSCH---HHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCC
T ss_pred             CCCcEEEEeCCCCCH---HHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCC
Confidence            366776666543332   25677788899999999855321  01122233   3 678999999999999874 6   7


Q ss_pred             CHHHHHHHHHhcCCcEEEec
Q 020428          213 EYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++++..+. +.|+|+|.++
T Consensus       219 s~e~A~~l~-~aGad~I~V~  237 (365)
T 3sr7_A          219 DVKTIQTAI-DLGVKTVDIS  237 (365)
T ss_dssp             CHHHHHHHH-HHTCCEEECC
T ss_pred             CHHHHHHHH-HcCCCEEEEe
Confidence            999999988 6999999984

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=96.42  E-value=0.062  Score=46.31  Aligned_cols=129  Identities=13%  Similarity=0.070  Sum_probs=81.4

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcE--EEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPV--TCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv--~vK~r~g  153 (326)
                      ++++-+=-.+.++..+.++.+..++|.+|+++  |-.              ...-.++++++++.. +.|+  .+|+-  
T Consensus         8 ~lilalD~~~~~~~~~~~~~~~~~vd~ie~g~--~~~--------------~~~G~~~i~~lr~~~~~~~i~ld~~l~--   69 (218)
T 3jr2_A            8 MIQIALDQTNLTDAVAVASNVASYVDVIEVGT--ILA--------------FAEGMKAVSTLRHNHPNHILVCDMKTT--   69 (218)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHGGGCSEEEECH--HHH--------------HHHTTHHHHHHHHHCTTSEEEEEEEEC--
T ss_pred             CeEEEeCCCCHHHHHHHHHHhcCCceEEEeCc--HHH--------------HhcCHHHHHHHHHhCCCCcEEEEEeec--
Confidence            56766656778888888877755899999874  110              111135677787763 4454  56653  


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHhcCCcEEE-eCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAALSIPVIA-NGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~~~iPVi~-nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ..+   ..+++.+.++|+|.|++|+-..      .... +.++.+++ .+++.+. .=++.|++++..+. ..|+|.+.+
T Consensus        70 d~p---~~~~~~~~~aGad~i~vh~~~~------~~~~~~~~~~~~~-~g~~~~~d~l~~~T~~~~~~~~-~~g~d~v~~  138 (218)
T 3jr2_A           70 DGG---AILSRMAFEAGADWITVSAAAH------IATIAACKKVADE-LNGEIQIEIYGNWTMQDAKAWV-DLGITQAIY  138 (218)
T ss_dssp             SCH---HHHHHHHHHHTCSEEEEETTSC------HHHHHHHHHHHHH-HTCEEEEECCSSCCHHHHHHHH-HTTCCEEEE
T ss_pred             ccH---HHHHHHHHhcCCCEEEEecCCC------HHHHHHHHHHHHH-hCCccceeeeecCCHHHHHHHH-HcCccceee
Confidence            222   3467889999999999997532      1112 33344443 3666553 33446788888887 469998776


Q ss_pred             ccc
Q 020428          232 ARG  234 (326)
Q Consensus       232 Gr~  234 (326)
                      .++
T Consensus       139 ~~~  141 (218)
T 3jr2_A          139 HRS  141 (218)
T ss_dssp             ECC
T ss_pred             eec
Confidence            543

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=96.42  E-value=0.064  Score=45.69  Aligned_cols=130  Identities=14%  Similarity=0.133  Sum_probs=78.7

Q ss_pred             EEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecCCCCh
Q 020428           78 VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRLLKSS  156 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~g~~~  156 (326)
                      +++.+=-.+.++..+.++.+..++|.|++..  |..  .            ..-.++++++++. .+.||.+-+-.....
T Consensus         3 li~a~D~~~~~~~~~~~~~~~~~~diie~G~--p~~--~------------~~g~~~i~~ir~~~~~~~i~~~~~~~~~~   66 (211)
T 3f4w_A            3 LQLALDELTLPEAMVFMDKVVDDVDIIEVGT--PFL--I------------REGVNAIKAIKEKYPHKEVLADAKIMDGG   66 (211)
T ss_dssp             EEEEECSCCHHHHHHHHHHHGGGCSEEEECH--HHH--H------------HHTTHHHHHHHHHCTTSEEEEEEEECSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHhhcCccEEEeCc--HHH--H------------hccHHHHHHHHHhCCCCEEEEEEEeccch
Confidence            3444433567777777777755889999865  432  1            1113567888876 478886533222212


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHH-HHHHHHHhcCCcEEEe-CCCCCH-HHHHHHHHhcCCcEEEecc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWG-EIADIVAALSIPVIAN-GDVFEY-DDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~-~i~~i~~~~~iPVi~n-GgI~s~-~d~~~~l~~~Gad~VmiGr  233 (326)
                         ..+++.+.++|+|.|++|+...      ..+.+ .++.++ ..+++++.. =+..|+ +.+..+. +.|+|.|.+..
T Consensus        67 ---~~~~~~~~~~Gad~v~v~~~~~------~~~~~~~~~~~~-~~g~~~~v~~~~~~t~~~~~~~~~-~~g~d~i~v~~  135 (211)
T 3f4w_A           67 ---HFESQLLFDAGADYVTVLGVTD------VLTIQSCIRAAK-EAGKQVVVDMICVDDLPARVRLLE-EAGADMLAVHT  135 (211)
T ss_dssp             ---HHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHH-HHTCEEEEECTTCSSHHHHHHHHH-HHTCCEEEEEC
T ss_pred             ---HHHHHHHHhcCCCEEEEeCCCC------hhHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHH-HcCCCEEEEcC
Confidence               2358889999999999997531      11222 333333 347776642 345665 5566666 68999987754


Q ss_pred             c
Q 020428          234 G  234 (326)
Q Consensus       234 ~  234 (326)
                      |
T Consensus       136 g  136 (211)
T 3f4w_A          136 G  136 (211)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.40  E-value=0.0053  Score=59.78  Aligned_cols=70  Identities=21%  Similarity=0.295  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      ...+.++.+.++|+|.|.+++-  .+.  ....|+.++++++.+ ++||+ .|+|.+.+++..++ ..|+|+|.+|.
T Consensus       233 ~~~~~a~~l~~~G~d~ivi~~a--~g~--~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~-~~Gad~I~vg~  303 (491)
T 1zfj_A          233 DTFERAEALFEAGADAIVIDTA--HGH--SAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALY-DAGVDVVKVGI  303 (491)
T ss_dssp             THHHHHHHHHHHTCSEEEECCS--CTT--CHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHH-HTTCSEEEECS
T ss_pred             hHHHHHHHHHHcCCCeEEEeee--cCc--chhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHH-HcCCCEEEECc
Confidence            3567788999999999999872  111  123477889999988 89999 89999999999999 69999999985

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=96.40  E-value=0.052  Score=47.38  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=84.6

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC--
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL--  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g--  153 (326)
                      ++.+.++. ++++..+.   +.. +.|.|.||..                ..|+.    ++.+++.+++|+.=-+|..  
T Consensus        72 ~~~v~v~v-~~~ei~~~---i~~~~ld~vQLHG~----------------E~~~~----~~~l~~~~~~~viKa~~v~~~  127 (228)
T 4aaj_A           72 VFLVSTMV-GFSEWAMA---IERTGAQYIQVHSN----------------ALPQT----IDTLKKEFGVFVMKAFRVPTI  127 (228)
T ss_dssp             EEEEECCC-CHHHHHHH---HHHHTCSEEEECSC----------------CCHHH----HHHHHHHHCCEEEEEEECCSS
T ss_pred             CEEEeccC-chHHHHHH---HHhccchheecccc----------------cCHHH----HHHHhhccCceEEEEEEeccc
Confidence            45555554 45554443   334 7899999842                23444    4555666677776445542  


Q ss_pred             -CC-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          154 -KS-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       154 -~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                       .. .++.......+....+|++.+...   ++.....||++++.+..  +.|++..||++ ++.+.++++..+..||=+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~d~~LlDs~---GGtG~~fDW~~~~~~~~--~~p~iLAGGL~-peNV~~Ai~~~~P~gVDV  201 (228)
T 4aaj_A          128 SKNPEEDANRLLSEISRYNADMVLLDTG---AGSGKLHDLRVSSLVAR--KIPVIVAGGLN-AENVEEVIKVVKPYGVDV  201 (228)
T ss_dssp             CSCHHHHHHHHHHHHHHSCCSEEEEEC----------CCCHHHHHHHH--HSCEEEESSCC-TTTHHHHHHHHCCSEEEE
T ss_pred             ccchhhhHHHHHHHHhccCCCEEccCCC---CCCcCcCChHHHHHhhh--cCCeEEECCCC-HHHHHHHHHHhCCCEEEe
Confidence             11 234555566677788999988752   22234579999888765  47999999995 788888887789999999


Q ss_pred             ccchh
Q 020428          232 ARGAL  236 (326)
Q Consensus       232 Gr~~l  236 (326)
                      .+|.=
T Consensus       202 sSGVE  206 (228)
T 4aaj_A          202 SSGVE  206 (228)
T ss_dssp             SGGGE
T ss_pred             CCCCC
Confidence            99964

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.35  E-value=0.058  Score=45.78  Aligned_cols=132  Identities=18%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             EEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh
Q 020428           78 VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS  156 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~  156 (326)
                      +++-+-..+.++..+.++.+..+++.|+++.+.  .  ..  .|          .++++++++.+ +.|+.+-+... +.
T Consensus         3 li~a~d~~~~~~~~~~~~~~~~~v~~iev~~~~--~--~~--~g----------~~~i~~l~~~~~~~~i~~~l~~~-di   65 (207)
T 3ajx_A            3 LQVAIDLLSTEAALELAGKVAEYVDIIELGTPL--I--KA--EG----------LSVITAVKKAHPDKIVFADMKTM-DA   65 (207)
T ss_dssp             EEEEECCSCHHHHHHHHHHHGGGCSEEEECHHH--H--HH--HC----------THHHHHHHHHSTTSEEEEEEEEC-SC
T ss_pred             EEEEeCCCCHHHHHHHHHHhhccCCEEEECcHH--H--Hh--hC----------HHHHHHHHHhCCCCeEEEEEEec-Cc
Confidence            455555667888888888877788999996531  1  00  11          23577777766 77887633222 31


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE-eCCCCCHHH-HHHHHHhcCCcEEEeccc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA-NGDVFEYDD-FQRIKTAAGASSVMAARG  234 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~-nGgI~s~~d-~~~~l~~~Gad~VmiGr~  234 (326)
                        ...+++.+.++|+|+|++|.-..      ....+.+.+..+..++++.. .-...|+++ +..+. ..|+|.|-+..+
T Consensus        66 --~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~-~~g~d~v~~~~~  136 (207)
T 3ajx_A           66 --GELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVR-ALGAKFVEMHAG  136 (207)
T ss_dssp             --HHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHH-HTTCSEEEEECC
T ss_pred             --cHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHH-HhCCCEEEEEec
Confidence              23356888899999999997532      11122222222223666522 223447766 44444 579999855444


Q ss_pred             h
Q 020428          235 A  235 (326)
Q Consensus       235 ~  235 (326)
                      .
T Consensus       137 ~  137 (207)
T 3ajx_A          137 L  137 (207)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C*

Probab=96.34  E-value=0.04  Score=53.11  Aligned_cols=123  Identities=13%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             CCHHHHHHHHHHh-h-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMV-C-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+|+++++.++.. . .||..+-+..|.+               +++.-.+.++++|++. ++++.+-..-+|+..++++
T Consensus       184 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~~  248 (455)
T 3pfr_A          184 MDTQAVIELAAASKDRYGFKDFKLKGGVF---------------EGSKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQ  248 (455)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHCTTCCEEEECTTBSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhCCCCeEeecCCCCCCHHHHHH
Confidence            5788888877764 4 3999998877642               2333355677888775 5667777777899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCC----HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAK----WGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +++.+++. +.+|-       |. ..+-|    ++.++++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus       249 ~~~~L~~~-l~~iE-------eP-~~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~~  313 (455)
T 3pfr_A          249 LCKGLNDV-LTYAE-------DP-CIGENGYSGREIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDIPLA  313 (455)
T ss_dssp             HHTTCTTT-CSEEE-------SC-BCCBTTBCHHHHHHHHHHHHCCCEEESSSCCSHHHHHHHHHHTCCSEEBC
T ss_pred             HHHhhccc-ceeee-------cC-CChhhccchHHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence            99999887 66652       21 22334    68889999999999988667788999999996556787654

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=96.33  E-value=0.016  Score=52.22  Aligned_cols=90  Identities=9%  Similarity=0.087  Sum_probs=62.4

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      .+.++++++.. ..|+.|-+.       +.+.++.+.++|+|.|.++..          ..+.++++.+.+  ++++.++
T Consensus       186 ~~Av~~ar~~~~~~~IeVEv~-------tl~ea~eAl~aGaD~I~LDn~----------~~~~l~~av~~~~~~v~ieaS  248 (287)
T 3tqv_A          186 AKAVTKAKKLDSNKVVEVEVT-------NLDELNQAIAAKADIVMLDNF----------SGEDIDIAVSIARGKVALEVS  248 (287)
T ss_dssp             HHHHHHHHHHCTTSCEEEEES-------SHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHHHHhhCCCCcEEEEeC-------CHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhhcCCceEEEE
Confidence            34555555543 467777553       235566667789999999764          235566655554  7899999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ||| +++.+.++. .+|+|.+.+|.-...-|+
T Consensus       249 GGI-t~~~i~~~a-~tGVD~IsvGalt~sa~~  278 (287)
T 3tqv_A          249 GNI-DRNSIVAIA-KTGVDFISVGAITKHIKA  278 (287)
T ss_dssp             SSC-CTTTHHHHH-TTTCSEEECSHHHHSBCC
T ss_pred             CCC-CHHHHHHHH-HcCCCEEEEChhhcCCcc
Confidence            999 578888888 699999999865444443

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=96.33  E-value=0.038  Score=47.73  Aligned_cols=128  Identities=9%  Similarity=0.027  Sum_probs=76.7

Q ss_pred             CCcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe--
Q 020428           75 RNHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI--  150 (326)
Q Consensus        75 ~~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~--  150 (326)
                      +.+++.-+ ++--+.....+++.+.+ |+|.+.+|..          .|.      +.+..+++...   ..-+.|-.  
T Consensus        58 ~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~~----------~G~------~~l~~~~~~~~---~~~~~V~~lt  118 (213)
T 1vqt_A           58 NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSC----------AGY------ESVERALSATD---KHVFVVVKLT  118 (213)
T ss_dssp             TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGG----------GCH------HHHHHHHHHCS---SEEEEECCCT
T ss_pred             CCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEecc----------CCH------HHHHHHHHhcC---CCeEEEEEeC
Confidence            45677777 34445666666766666 8999999852          121      22223322221   11122222  


Q ss_pred             cCCCCh-HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHH---H------HHHH
Q 020428          151 RLLKSS-QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYD---D------FQRI  220 (326)
Q Consensus       151 r~g~~~-~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~---d------~~~~  220 (326)
                      ..+... +.....++. .+.|++ +++.+             +.++++++.++.| +..+||.-..   |      ..+ 
T Consensus       119 s~~~~l~~~v~~~a~~-~e~G~d-vV~~~-------------~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~~~-  181 (213)
T 1vqt_A          119 SMEGSLEDYMDRIEKL-NKLGCD-FVLPG-------------PWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTLEE-  181 (213)
T ss_dssp             TSCCCHHHHHHHHHHH-HHHTCE-EECCH-------------HHHHHHTTTCCSC-EEECCBC---------CCBCHHH-
T ss_pred             CCCHHHHHHHHHHHHH-hcCCCE-EEEcH-------------HHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCHHH-
Confidence            221111 456777888 999999 54422             4567777777778 8888986432   2      566 


Q ss_pred             HHhcCCcEEEeccchhcCc
Q 020428          221 KTAAGASSVMAARGALWNA  239 (326)
Q Consensus       221 l~~~Gad~VmiGr~~l~~P  239 (326)
                      + +.|+|++.+||+++..+
T Consensus       182 i-~aGad~iVvGR~I~~a~  199 (213)
T 1vqt_A          182 M-KGIANFAVLGREIYLSE  199 (213)
T ss_dssp             H-TTTCSEEEESHHHHTSS
T ss_pred             H-HCCCCEEEEChhhcCCC
Confidence            7 68999999999988644

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=96.32  E-value=0.029  Score=51.52  Aligned_cols=95  Identities=18%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecCCCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCC
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRLLKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSI  203 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~i  203 (326)
                      ..++.+.+.++.+++.++.|+.+-+-....  ..+..+.++.+.+.|+|.|++|...       |  ++.++.+++. ++
T Consensus        50 ~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~-------p--~~~~~~l~~~-gi  119 (328)
T 2gjl_A           50 PSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND-------P--GEHIAEFRRH-GV  119 (328)
T ss_dssp             SSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC-------C--HHHHHHHHHT-TC
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC-------c--HHHHHHHHHc-CC
Confidence            357888888999988777787776544210  2235677888889999999999642       2  5777887765 88


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEe-cc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMA-AR  233 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~Vmi-Gr  233 (326)
                      ||+.  .+.|.+++..+. ..|+|++.+ |+
T Consensus       120 ~vi~--~v~t~~~a~~~~-~~GaD~i~v~g~  147 (328)
T 2gjl_A          120 KVIH--KCTAVRHALKAE-RLGVDAVSIDGF  147 (328)
T ss_dssp             EEEE--EESSHHHHHHHH-HTTCSEEEEECT
T ss_pred             CEEe--eCCCHHHHHHHH-HcCCCEEEEECC
Confidence            9885  488999999888 689999998 53

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=96.28  E-value=0.06  Score=46.56  Aligned_cols=133  Identities=8%  Similarity=-0.035  Sum_probs=85.1

Q ss_pred             CCcEEEEE-CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           75 RNHVVFQM-GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        75 ~~p~~vQl-~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      +.+++.-+ ++.-|.....+++.+.+.+|.+.+|.....         ...++          +...  +.-|++=++..
T Consensus        50 g~~VflDlK~~DIpnTv~~a~~~~~~~ad~vTvh~~~G~---------~~~~~----------~~~~--~~~v~vLts~s  108 (215)
T 3ve9_A           50 DGIKILDLKLADIDNTMILIVDELKDITNSFIAHAFVGV---------EGSLA----------SLSQ--RVDLFLVLSMS  108 (215)
T ss_dssp             CSEEEEEEEECSCHHHHHHHHHHHTTTCSEEEEEGGGCT---------TTTHH----------HHHH--HSEEEEECCCS
T ss_pred             CCcEEEEecccCchhHHHHHHHHHHHhhheEEEeCCCCc---------HHHHH----------hHhc--CCCEEEEEecC
Confidence            45777777 455577777666666545899999853220         11111          1111  12245444442


Q ss_pred             ---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEE
Q 020428          154 ---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSV  229 (326)
Q Consensus       154 ---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~V  229 (326)
                         +..+....+++...++|++++++.+.          ..+.++.+++.++-.++..+||+.. .+..+++ ..|+|.+
T Consensus       109 ~~~~~~~~v~~~a~~a~~~G~~GvV~sat----------~~~e~~~ir~~~~~f~~v~pGI~~~g~~~~~a~-~~Gad~i  177 (215)
T 3ve9_A          109 HPGWNDAFYPYLREVARRVNPKGFVAPAT----------RPSMISRVKGDFPDKLVISPGVGTQGAKPGIAL-CHGADYE  177 (215)
T ss_dssp             STTCCGGGHHHHHHHHHHHCCSEEECCTT----------SHHHHHHHHHHCTTSEEEECCTTSTTCCTTHHH-HTTCSEE
T ss_pred             CcchHHHHHHHHHHHHHHcCCCceeeCCC----------CHHHHHHHHHhCCCcEEEcCCCCcCcCCHHHHH-HcCCCEE
Confidence               22345788899999999999887432          2456677887764478888999842 1566677 5899999


Q ss_pred             EeccchhcCc
Q 020428          230 MAARGALWNA  239 (326)
Q Consensus       230 miGr~~l~~P  239 (326)
                      ++||+++..+
T Consensus       178 VvGr~I~~a~  187 (215)
T 3ve9_A          178 IVGRSVYQSA  187 (215)
T ss_dssp             EECHHHHTSS
T ss_pred             EeCHHHcCCC
Confidence            9999988743

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=96.27  E-value=0.032  Score=50.09  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=63.6

Q ss_pred             HHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428           87 AVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus        87 ~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      .+...+.|+. +.+|+|.||||++.+.            ...++.+..+++++++.+++|+++-..   +    .++++.
T Consensus        33 ~~~a~~~a~~~v~~GAdiIDIg~~s~~------------~eE~~rv~~vi~~l~~~~~~pisIDT~---~----~~v~~a   93 (271)
T 2yci_X           33 PRPIQEWARRQAEKGAHYLDVNTGPTA------------DDPVRVMEWLVKTIQEVVDLPCCLDST---N----PDAIEA   93 (271)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEEECCSCS------------SCHHHHHHHHHHHHHHHCCCCEEEECS---C----HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEcCCcCc------------hhHHHHHHHHHHHHHHhCCCeEEEeCC---C----HHHHHH
Confidence            3444444444 4459999999987632            246788999999999888999999774   2    344555


Q ss_pred             HHHc--CCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          166 IEKT--GVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       166 l~~~--G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      ..++  |++.|. +++..        -+++.+..+....+.|+|+
T Consensus        94 al~a~~Ga~iINdvs~~~--------d~~~~~~~~~a~~~~~vv~  130 (271)
T 2yci_X           94 GLKVHRGHAMINSTSADQ--------WKMDIFFPMAKKYEAAIIG  130 (271)
T ss_dssp             HHHHCCSCCEEEEECSCH--------HHHHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCCCEEEECCCCc--------cccHHHHHHHHHcCCCEEE
Confidence            5555  998886 65531        1234455555667889887

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=96.25  E-value=0.048  Score=50.69  Aligned_cols=44  Identities=11%  Similarity=0.358  Sum_probs=38.2

Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          187 DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +...|+.++.+++.+++||+.-| +.+.+++..+. +.|+|+|.+.
T Consensus       202 ~~~~w~~i~~lr~~~~~PvivK~-v~~~e~A~~a~-~~GaD~I~vs  245 (352)
T 3sgz_A          202 ASFCWNDLSLLQSITRLPIILKG-ILTKEDAELAM-KHNVQGIVVS  245 (352)
T ss_dssp             TTCCHHHHHHHHHHCCSCEEEEE-ECSHHHHHHHH-HTTCSEEEEC
T ss_pred             CCCCHHHHHHHHHhcCCCEEEEe-cCcHHHHHHHH-HcCCCEEEEe
Confidence            45689999999999999998764 68999999988 6999999884

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=96.25  E-value=0.031  Score=51.14  Aligned_cols=89  Identities=10%  Similarity=0.128  Sum_probs=61.5

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      .+.++++++.. ..|+.|-+.       +.+.++.+.++|+|.|-+...          +.+.++++++.+  ++++.++
T Consensus       219 ~~Av~~ar~~~p~~kIeVEVd-------tldea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaS  281 (320)
T 3paj_A          219 RQAISTAKQLNPGKPVEVETE-------TLAELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENS  281 (320)
T ss_dssp             HHHHHHHHHHSTTSCEEEEES-------SHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEE
T ss_pred             HHHHHHHHHhCCCCeEEEEEC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEE
Confidence            34555555544 356666552       234455566689999999763          346666666655  6899999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      |||+ .+.+.++. .+|+|++.+|.-...-|
T Consensus       282 GGIt-~~~I~~~a-~tGVD~isvGalt~sa~  310 (320)
T 3paj_A          282 GNIT-LDNLKECA-ETGVDYISVGALTKHLK  310 (320)
T ss_dssp             SSCC-HHHHHHHH-TTTCSEEECTHHHHSBC
T ss_pred             CCCC-HHHHHHHH-HcCCCEEEECceecCCC
Confidence            9996 88888888 69999999997433333

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=96.24  E-value=0.4  Score=42.47  Aligned_cols=93  Identities=17%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL  152 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~  152 (326)
                      .+.++|-|.|.+.+++.+.++.+.. ++|.||+=+.+=..           ..+++.+.+.+..+++.. +.|+.+-+|.
T Consensus        19 ~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~-----------~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt   87 (258)
T 4h3d_A           19 RPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFEN-----------VENIKEVKEVLYELRSYIHDIPLLFTFRS   87 (258)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTT-----------TTCHHHHHHHHHHHHHHCTTSCEEEECCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccc-----------cCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            3458899999999998887777765 89999996532110           135678899999998876 7999999997


Q ss_pred             ----C---CChHHHHHHHHHHHHcC-CcEEEEee
Q 020428          153 ----L---KSSQDTVELARRIEKTG-VSALAVHG  178 (326)
Q Consensus       153 ----g---~~~~~~~e~a~~l~~~G-~d~i~vh~  178 (326)
                          |   .+.+...++.+.+.+.| +|+|.|--
T Consensus        88 ~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl  121 (258)
T 4h3d_A           88 VVEGGEKLISRDYYTTLNKEISNTGLVDLIDVEL  121 (258)
T ss_dssp             GGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEG
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhh
Confidence                2   24556777777777776 89998864

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=96.24  E-value=0.11  Score=47.93  Aligned_cols=79  Identities=19%  Similarity=0.227  Sum_probs=52.4

Q ss_pred             HHHHHHHH--HHcCCcEEEEeec-cc---CCC------CCCcCCHHHHHHHHHhcCCcEE-EeCCCCCHHHHHHHHH---
Q 020428          159 TVELARRI--EKTGVSALAVHGR-KV---ADR------PRDPAKWGEIADIVAALSIPVI-ANGDVFEYDDFQRIKT---  222 (326)
Q Consensus       159 ~~e~a~~l--~~~G~d~i~vh~r-~~---~~~------~~~~~~~~~i~~i~~~~~iPVi-~nGgI~s~~d~~~~l~---  222 (326)
                      ....++.+  .+.|+|.+-+--- +.   ++.      |+.....+.++++.+.+++|+| .+||+ +.+++.++++   
T Consensus       190 V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~A~  268 (332)
T 3iv3_A          190 VNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVFAH  268 (332)
T ss_dssp             HHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHHHH
Confidence            66777888  6779999987411 00   011      1111112457777788899965 69998 5666666653   


Q ss_pred             hcCC--cEEEeccchhcC
Q 020428          223 AAGA--SSVMAARGALWN  238 (326)
Q Consensus       223 ~~Ga--d~VmiGr~~l~~  238 (326)
                      +.||  .||.+||....+
T Consensus       269 ~aGa~f~Gv~~GRnvwq~  286 (332)
T 3iv3_A          269 KAGAKFNGVLCGRATWAG  286 (332)
T ss_dssp             HHTCCCCEEEECHHHHTT
T ss_pred             HcCCCcceEEeeHHHHHh
Confidence            4789  999999997775

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=96.21  E-value=0.014  Score=55.21  Aligned_cols=67  Identities=18%  Similarity=0.333  Sum_probs=52.4

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+.++.+.++|+|.|.+..-.  +  ......+.++++++..++||++ |++.|.++++.+. +.|||+|.+|
T Consensus       146 ~e~~~~lveaGvdvIvldta~--G--~~~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~-~aGAD~I~vG  212 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAH--G--HSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELI-ENGADGIKVG  212 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSC--C--SBHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEeCCC--C--CcccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHH-HcCCCEEEEe
Confidence            678999999999999874210  0  0111257788888888999986 6889999999998 6999999996

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=96.18  E-value=0.033  Score=50.21  Aligned_cols=116  Identities=12%  Similarity=0.022  Sum_probs=72.8

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC-CcCCHHHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR-DPAKWGEIADIV  198 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~-~~~~~~~i~~i~  198 (326)
                      .|+..+.+.+++++    + ..++.||.+|....-+.++....+..+...|...+++.-|+..-.|. ...|+..+..++
T Consensus       111 Iga~~~~n~~ll~~----~-a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~~~~~~~~dl~~i~~lk  185 (280)
T 2qkf_A          111 LPAFLARQTDLVVA----M-AKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMK  185 (280)
T ss_dssp             ECGGGTTBHHHHHH----H-HHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHH
T ss_pred             ECcccccCHHHHHH----H-HcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHH
Confidence            45677788875544    4 24699999999876577788888899999998666654454332221 125888899999


Q ss_pred             Hhc-CCcEEEe-----------CCCCCH------HHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          199 AAL-SIPVIAN-----------GDVFEY------DDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       199 ~~~-~iPVi~n-----------GgI~s~------~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +.. ++||+..           |+-...      .-+.... ..||+|+||=+=+--+..+
T Consensus       186 ~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aav-a~Ga~G~~IE~H~~~d~al  245 (280)
T 2qkf_A          186 QTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGM-ATRLAGLFLESHPDPKLAK  245 (280)
T ss_dssp             HHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHH-TTCCSEEEEEC--------
T ss_pred             HhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHH-HcCCCEEEEeecCCcccCC
Confidence            887 8999983           222222      2233445 6899999998765444333

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=96.18  E-value=0.098  Score=48.50  Aligned_cols=122  Identities=20%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++. ...-.+||.+-+. +.+..++++++
T Consensus        44 ID~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~-~~~grvpViaGvg-~~st~eai~la  111 (344)
T 2hmc_A           44 PDFDALVRKGKELIADGMSAVVYCG----------SMGDWPLLTDEQRMEGVER-LVKAGIPVIVGTG-AVNTASAVAHA  111 (344)
T ss_dssp             BCHHHHHHHHHHHHHTTCCCEEESS----------GGGTGGGSCHHHHHHHHHH-HHHTTCCEEEECC-CSSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCc----------cCcChhhCCHHHHHHHHHH-HhCCCCcEEEecC-CCCHHHHHHHH
Confidence            467788888887665 899988764          2344444455666666666 2222688888774 25678999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCC-cC---CHHHHHHHHH-hcCCcEE-Ee----CCCCCHHHHHHH-HH
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRD-PA---KWGEIADIVA-ALSIPVI-AN----GDVFEYDDFQRI-KT  222 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~-~~---~~~~i~~i~~-~~~iPVi-~n----GgI~s~~d~~~~-l~  222 (326)
                      +.+++.|+|++.+..-    .|.. +.   -++.++.|.+ .+++||+ +|    |---+++.+.++ .+
T Consensus       112 ~~A~~~Gadavlv~~P----~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L~a~  177 (344)
T 2hmc_A          112 VHAQKVGAKGLMVIPR----VLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAE  177 (344)
T ss_dssp             HHHHHHTCSEEEECCC----CSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECCC----ccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHHHhc
Confidence            9999999999987532    2222 22   2456678888 7899976 55    434578888888 53

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=96.17  E-value=0.048  Score=49.14  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-cCCHHHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-PAKWGEIADIV  198 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~~~~~~i~~i~  198 (326)
                      .|+..+.+.+++++    +. ..+.||.+|....-+.++....++.+.+.|.+-|++--|+..-.|.. ..|+..+..++
T Consensus       116 IgA~~~~n~~LLr~----va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk  190 (285)
T 3sz8_A          116 VPAFLARQTDLVVA----IA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMA  190 (285)
T ss_dssp             ECGGGTTCHHHHHH----HH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHH
T ss_pred             ECccccCCHHHHHH----HH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHH
Confidence            35777888885554    33 35899999998766777888888999999987777644433222322 26888999999


Q ss_pred             Hhc-CCcEEEe---------------CCCCC--HHHHHHHHHhcCCcEEEeccch
Q 020428          199 AAL-SIPVIAN---------------GDVFE--YDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       199 ~~~-~iPVi~n---------------GgI~s--~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.. ++||++.               ||-+.  +.-+.... ..||||++|=+=.
T Consensus       191 ~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAv-A~GA~gl~IE~H~  244 (285)
T 3sz8_A          191 ETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGI-AVGIAGLFLEAHP  244 (285)
T ss_dssp             HHTTSCCEEEETTTTCC---------------HHHHHHHHH-HHCCSEEEEEEES
T ss_pred             HhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHH-HhCCCEEEEEecc
Confidence            988 5999983               22211  23344555 5899999987643

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=96.16  E-value=0.1  Score=48.38  Aligned_cols=207  Identities=14%  Similarity=0.130  Sum_probs=120.4

Q ss_pred             ceEEccccC--CCCH----HHHHHHHHcCCCeEEeCceeccccccccccccc--ccCc-c-c---c--cccCCcceeeec
Q 020428            6 KLVLAPMVR--VGTL----PFRLLAAQYGADITYGEEIIDHKLLKCERRVNE--YIGS-T-D---F--VEKGTDSVVFRT   70 (326)
Q Consensus         6 ~iilAPM~g--~t~~----~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~--~~~~-~-~---~--~~~~~~~~~~~~   70 (326)
                      ++|+|.+..  ..+.    .+...+.+.||+.+=-..-.++.+........+  ..++ . +   +  +..+..+.+.+.
T Consensus        20 ~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~   99 (349)
T 2wqp_A           20 PLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEY   99 (349)
T ss_dssp             CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred             eEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHH
Confidence            678887764  3342    344667778998775443333332110000000  0000 0 0   0  000011223455


Q ss_pred             ccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE
Q 020428           71 CHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK  149 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK  149 (326)
                      +.+.+-+++--.+.  ++..    ..+.+ ++|.+-|              ||.-+.|..+++.+    . ..+.||.+|
T Consensus       100 ~~~~Gi~~~st~~d--~~sv----d~l~~~~v~~~KI--------------~S~~~~n~~LL~~v----a-~~gkPviLs  154 (349)
T 2wqp_A          100 VESKGMIFISTLFS--RAAA----LRLQRMDIPAYKI--------------GSGECNNYPLIKLV----A-SFGKPIILS  154 (349)
T ss_dssp             HHHTTCEEEEEECS--HHHH----HHHHHHTCSCEEE--------------CGGGTTCHHHHHHH----H-TTCSCEEEE
T ss_pred             HHHhCCeEEEeeCC--HHHH----HHHHhcCCCEEEE--------------CcccccCHHHHHHH----H-hcCCeEEEE
Confidence            56666666655553  2222    22223 4566665              45567777775554    3 359999999


Q ss_pred             ecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          150 IRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       150 ~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      .... +.++....++.+.+.|.+.+.+|+-+.-.......|+..|..+++.. ++||..++-=....-....+ ..||+ 
T Consensus       155 tGma-t~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~AAv-AlGA~-  231 (349)
T 2wqp_A          155 TGMN-SIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAV-ALGGS-  231 (349)
T ss_dssp             CTTC-CHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHH-HHTCC-
T ss_pred             CCCC-CHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHHHHH-HhCCC-
Confidence            9875 77888888899999999888889654333333456889999999998 89998776444456666666 57998 


Q ss_pred             EEeccchhcCccc
Q 020428          229 VMAARGALWNASI  241 (326)
Q Consensus       229 VmiGr~~l~~P~l  241 (326)
                       ||=+-+--+..+
T Consensus       232 -iIEkH~tld~a~  243 (349)
T 2wqp_A          232 -ILERHFTDRMDR  243 (349)
T ss_dssp             -EEEEEBCSCTTC
T ss_pred             -EEEeCCCccccC
Confidence             555444334444

>3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A*

Probab=96.15  E-value=0.032  Score=52.71  Aligned_cols=128  Identities=9%  Similarity=-0.041  Sum_probs=89.7

Q ss_pred             HHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHH
Q 020428           87 AVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        87 ~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      ++++.+.++. +..||..+-+..|.+....       .-..+++.-.+.++++|+++  ++++.+-..-+|+..++++++
T Consensus       149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~-------~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~  221 (392)
T 3v5c_A          149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHM-------PLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVL  221 (392)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEECCTTTTTS-------CHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCccc-------cccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHH
Confidence            4555555544 4459999999887532100       00012456667788888875  678888888889999999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +.+++.++.+|       +|.. . .|++..+++++.     ..+||...=.+. ..++.++++...+|.+++
T Consensus       222 ~~L~~~~l~~i-------EeP~-~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~  284 (392)
T 3v5c_A          222 AALSDVNLYWL-------EAAF-H-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQY  284 (392)
T ss_dssp             HHTTTSCCCEE-------ECSS-S-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECC
T ss_pred             HhcccCCCeEE-------eCCC-C-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEe
Confidence            99999988876       2222 2 378888888875     578877766677 788889996555787755

>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A

Probab=96.14  E-value=0.077  Score=51.25  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHH-hhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           86 DAVRALTAAKM-VCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        86 ~~~~~~~aa~~-~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      ++++..+.++. ..+ ||..+-+..|.+               +++.-.+.++++++++ +.++.+-..-+|+.++++++
T Consensus       202 ~~~~~~~~~~~~~~~~Gf~~~KlKvG~~---------------~~~~di~~v~avrea~pd~~L~vDaN~~wt~~~Ai~~  266 (464)
T 4g8t_A          202 TPESVVRLAEAAYEKYGFNDFKLKGGVL---------------DGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKI  266 (464)
T ss_dssp             SHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEeCCCC---------------CHHHHHHHHHHHHhhCCCceEEEECCCccCHHHHHHH
Confidence            45555544443 444 999988876532               3444556788888877 56777777778999999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCc----CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDP----AKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~----~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      ++.+++. +.++       ++. ..+    ...+..+++++.+++||.+.-.+.+..++.++++...+|.++
T Consensus       267 ~~~le~~-l~wi-------EeP-~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~  329 (464)
T 4g8t_A          267 GKQLKGV-LAYA-------EDP-CGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPL  329 (464)
T ss_dssp             HHHTTTT-CSCE-------ESC-BCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSEEB
T ss_pred             HHHhhhc-ccee-------ecC-cCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCEEe
Confidence            9999865 6554       111 111    235778899999999999999999999999999765567544

>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A*

Probab=96.14  E-value=0.037  Score=52.50  Aligned_cols=97  Identities=10%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE
Q 020428          128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV  205 (326)
Q Consensus       128 p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV  205 (326)
                      ++.-.+.++++|+++  ++++.+-...+|+..+++++++.+++.++.+|-       | +..+-|++..+++++.+++||
T Consensus       193 ~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l~~iE-------e-P~~~~d~~~~a~l~~~~~~pi  264 (404)
T 3ekg_A          193 LKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGLKWIE-------E-ALPPDDYWGYAELRRNAPTGM  264 (404)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEEE-------C-CSCTTCHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCCcEEe-------c-CCCcccHHHHHHHHHhcCCCe
Confidence            355667788888887  577888888789999999999999999988872       2 234558999999999998884


Q ss_pred             -EEeC-CCCCHHHHHHHHHhcCCcEEEec
Q 020428          206 -IANG-DVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       206 -i~nG-gI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                       |+.| .+.|..++.++++...+|.+++=
T Consensus       265 ~Ia~gE~~~~~~~~~~li~~~a~dii~~d  293 (404)
T 3ekg_A          265 MVTTGEHEATRWGFRMLLEMGCCDIIQPD  293 (404)
T ss_dssp             EEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred             EEEecCccCCHHHHHHHHHcCCCCeEecC
Confidence             4444 58899999999965557877653

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=96.13  E-value=0.074  Score=48.33  Aligned_cols=102  Identities=10%  Similarity=0.088  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCc-EEEEeecccCCC-CCC-cCC----HHHHHHHHH
Q 020428          129 ELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVS-ALAVHGRKVADR-PRD-PAK----WGEIADIVA  199 (326)
Q Consensus       129 ~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d-~i~vh~r~~~~~-~~~-~~~----~~~i~~i~~  199 (326)
                      +...+.+...++..  +.|+.+-+. +.+.++..+.++.++++|+| +|.+|-...... ... ..+    ++.++.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~  155 (311)
T 1jub_A           77 DYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFT  155 (311)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHH
Confidence            33333344443344  788888775 56788999999999999999 999985322110 000 112    456677777


Q ss_pred             hcCCcEEE--eCCCCCHHHH---HHHHHhcCCcEEEec
Q 020428          200 ALSIPVIA--NGDVFEYDDF---QRIKTAAGASSVMAA  232 (326)
Q Consensus       200 ~~~iPVi~--nGgI~s~~d~---~~~l~~~Gad~VmiG  232 (326)
                      .+++||+.  +.++ +.+++   .+.+++.|+|+|.+-
T Consensus       156 ~~~~Pv~vKi~~~~-~~~~~~~~a~~~~~~G~d~i~v~  192 (311)
T 1jub_A          156 FFTKPLGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSV  192 (311)
T ss_dssp             TCCSCEEEEECCCC-SHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             hcCCCEEEEECCCC-CHHHHHHHHHHHHHcCCcEEEec
Confidence            77899874  5555 55554   344557899998774

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=96.12  E-value=0.02  Score=51.96  Aligned_cols=90  Identities=16%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      .+.++++++.. ..|+.|-+.       +.+.++.+.++|+|.|.+...          +.+.+++..+.+  ++++.++
T Consensus       197 ~~Av~~~r~~~p~~~ieVEvd-------tlde~~eAl~aGaD~I~LDn~----------~~~~l~~av~~i~~~v~ieaS  259 (298)
T 3gnn_A          197 GEALDAAFALNAEVPVQIEVE-------TLDQLRTALAHGARSVLLDNF----------TLDMMRDAVRVTEGRAVLEVS  259 (298)
T ss_dssp             HHHHHHHHHHC--CCCEEEES-------SHHHHHHHHHTTCEEEEEESC----------CHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEE
Confidence            34555555543 345555542       223455566689999999764          245555555543  6889999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ||| +.+.+.++. .+|+|++.+|.....-|+
T Consensus       260 GGI-~~~~i~~~a-~tGVD~isvG~lt~sa~~  289 (298)
T 3gnn_A          260 GGV-NFDTVRAIA-ETGVDRISIGALTKDVRA  289 (298)
T ss_dssp             SSC-STTTHHHHH-HTTCSEEECGGGGTSCCC
T ss_pred             cCC-CHHHHHHHH-HcCCCEEEECCeecCCCc
Confidence            999 578888888 699999999986554444

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=96.05  E-value=0.21  Score=43.37  Aligned_cols=134  Identities=11%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             CcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           76 NHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .++++-+ ++..|+....+++.+.+ |+|.|.+|.-+          |      ++.+...++.+++. +..|++=....
T Consensus        65 ~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~----------G------~~~l~~~~~~~~~~-g~~v~vLt~~s  127 (228)
T 3m47_A           65 CRIIADFKVADIPETNEKICRATFKAGADAIIVHGFP----------G------ADSVRACLNVAEEM-GREVFLLTEMS  127 (228)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT----------C------HHHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred             CeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccC----------C------HHHHHHHHHHHHhc-CCCeEEEEeCC
Confidence            4666666 34556666666666655 99999998532          1      23444555555432 33455533331


Q ss_pred             C-C-----hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCC-cEEEeCCCCCH-HHHHHHHHhcC
Q 020428          154 K-S-----SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSI-PVIANGDVFEY-DDFQRIKTAAG  225 (326)
Q Consensus       154 ~-~-----~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~i-PVi~nGgI~s~-~d~~~~l~~~G  225 (326)
                      . +     ......+++...+.|++++++.+.          ..+.++++++.++- ..+..+||... .+. +++ ..|
T Consensus       128 ~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at----------~~~e~~~ir~~~~~~~~iv~PGI~~~g~~p-~~~-~aG  195 (228)
T 3m47_A          128 HPGAEMFIQGAADEIARMGVDLGVKNYVGPST----------RPERLSRLREIIGQDSFLISPGVGAQGGDP-GET-LRF  195 (228)
T ss_dssp             SGGGGTTHHHHHHHHHHHHHHTTCCEEECCSS----------CHHHHHHHHHHHCSSSEEEECC----------CG-GGT
T ss_pred             CccHHHHHHHHHHHHHHHHHHhCCcEEEECCC----------ChHHHHHHHHhcCCCCEEEecCcCcCCCCH-hHH-HcC
Confidence            1 1     123456788888999999876441          23456777776642 34477888642 256 667 689


Q ss_pred             CcEEEeccchhcC
Q 020428          226 ASSVMAARGALWN  238 (326)
Q Consensus       226 ad~VmiGr~~l~~  238 (326)
                      +|.+++||+++..
T Consensus       196 ad~iVvGr~I~~a  208 (228)
T 3m47_A          196 ADAIIVGRSIYLA  208 (228)
T ss_dssp             CSEEEECHHHHTS
T ss_pred             CCEEEECHHHhCC
Confidence            9999999997753

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=96.05  E-value=0.085  Score=47.62  Aligned_cols=119  Identities=14%  Similarity=0.030  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.++- |.+-+. +.+..++++++
T Consensus        17 iD~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg-~~~t~~ai~la   84 (288)
T 2nuw_A           17 VNVDALKTHAKNLLEKGIDAIFVNGT----------TGLGPALSKDEKRQNLNALYDVTHK-LIFQVG-SLNLNDVMELV   84 (288)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEETST----------TTTGGGSCHHHHHHHHHHHTTTCSC-EEEECC-CSCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCC-eEEeeC-CCCHHHHHHHH
Confidence            477888888887665 9999988642          3444445677778889999887744 555543 25678999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCC-cC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHH
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRD-PA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQR  219 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~-~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~  219 (326)
                      +.++++|+|++.+..-    .|.. +.   -++.++.|.+++++||+ +|     |---+++.+.+
T Consensus        85 ~~A~~~Gadavlv~~P----~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~  146 (288)
T 2nuw_A           85 KFSNEMDILGVSSHSP----YYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKS  146 (288)
T ss_dssp             HHHHTSCCSEEEECCC----CSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTT
T ss_pred             HHHHhcCCCEEEEcCC----cCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhc
Confidence            9999999999987632    2222 22   24566788888899976 45     32235555544

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=96.04  E-value=0.092  Score=47.32  Aligned_cols=119  Identities=16%  Similarity=0.105  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.++- |.+-+. ..+..++++++
T Consensus        16 iD~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg-~~~t~~ai~la   83 (286)
T 2r91_A           16 LDPELFANHVKNITSKGVDVVFVAGT----------TGLGPALSLQEKMELTDAATSAARR-VIVQVA-SLNADEAIALA   83 (286)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEETST----------TTTGGGSCHHHHHHHHHHHHHHCSS-EEEECC-CSSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHhCC-EEEeeC-CCCHHHHHHHH
Confidence            477788888887665 9999988642          3444444667777888888877644 555553 25678999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCC-cC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHH
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRD-PA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQR  219 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~-~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~  219 (326)
                      +.++++|+|++.+..-    .|.. +.   -++.++.|.+++++||+ +|     |---+++.+.+
T Consensus        84 ~~A~~~Gadavlv~~P----~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~  145 (286)
T 2r91_A           84 KYAESRGAEAVASLPP----YYFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE  145 (286)
T ss_dssp             HHHHHTTCSEEEECCS----CSSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred             HHHHhcCCCEEEEcCC----cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh
Confidence            9999999999988633    2222 22   24566788888899986 45     32346666655

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=96.04  E-value=0.033  Score=47.97  Aligned_cols=82  Identities=16%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             cEEEEecCC---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE-------eCCC---
Q 020428          145 PVTCKIRLL---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA-------NGDV---  211 (326)
Q Consensus       145 pv~vK~r~g---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~-------nGgI---  211 (326)
                      -||+....+   .+.+.+.++++.++++|++++++.            ..+.++++++.+++|+++       .+++   
T Consensus         8 ~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~   75 (223)
T 1y0e_A            8 IVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFIT   75 (223)
T ss_dssp             EEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBS
T ss_pred             EEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC------------CHHHHHHHHHhcCCCEEeeeccCCCccccccC
Confidence            345555443   245788999999999999999763            247789999999999974       3455   


Q ss_pred             CCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          212 FEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       212 ~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      .+.+++..++ ..|+|.|.++.....+|
T Consensus        76 ~~~~~i~~~~-~~Gad~v~l~~~~~~~p  102 (223)
T 1y0e_A           76 ATSKEVDELI-ESQCEVIALDATLQQRP  102 (223)
T ss_dssp             CSHHHHHHHH-HHTCSEEEEECSCSCCS
T ss_pred             CcHHHHHHHH-hCCCCEEEEeeecccCc
Confidence            5678888888 68999999998877776

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=96.03  E-value=0.053  Score=50.77  Aligned_cols=88  Identities=17%  Similarity=0.265  Sum_probs=65.1

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-------------------------------CC-------
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-------------------------------DR-------  184 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------------------------~~-------  184 (326)
                      +.|+++.+=...+.+...+.++.++++|++.|.+|--+..                               +.       
T Consensus       132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~  211 (368)
T 2nli_A          132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA  211 (368)
T ss_dssp             TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred             CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence            5677776643345667788888888999998887633111                               00       


Q ss_pred             CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          185 PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       185 ~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ......|+.++.+++.+++||+.-| +.++++++.+. +.|+|+|.+.
T Consensus       212 ~d~~~~~~~i~~lr~~~~~PvivK~-v~~~e~a~~a~-~~Gad~I~vs  257 (368)
T 2nli_A          212 SKQKISPRDIEEIAGHSGLPVFVKG-IQHPEDADMAI-KRGASGIWVS  257 (368)
T ss_dssp             BCSBCCHHHHHHHHHHSSSCEEEEE-ECSHHHHHHHH-HTTCSEEEEC
T ss_pred             cCchhhHHHHHHHHHHcCCCEEEEc-CCCHHHHHHHH-HcCCCEEEEc
Confidence            0234579999999999999998864 68999999988 6999999984

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=96.02  E-value=0.16  Score=47.62  Aligned_cols=45  Identities=16%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       186 ~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ....+|+.++++++.+++||+.- |+.++++++.+. +.|+|+|.++
T Consensus       209 ~p~~~~~~i~~i~~~~~~Pv~vk-gv~t~e~a~~a~-~aGad~I~vs  253 (380)
T 1p4c_A          209 DASFNWEALRWLRDLWPHKLLVK-GLLSAEDADRCI-AEGADGVILS  253 (380)
T ss_dssp             CTTCCHHHHHHHHHHCCSEEEEE-EECCHHHHHHHH-HTTCSEEEEC
T ss_pred             CccccHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHH-HcCCCEEEEc
Confidence            34567999999999999999976 489999999999 6999999994

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=95.97  E-value=0.32  Score=44.16  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=82.6

Q ss_pred             CCcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc----EEE
Q 020428           75 RNHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP----VTC  148 (326)
Q Consensus        75 ~~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p----v~v  148 (326)
                      +.+++.-+ ++--|.....+++.+.+ |+|.+.+|..          .|      ++.+...++..++.-..|    |++
T Consensus        76 g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa~----------~G------~~~m~aa~e~a~~~~~~~~llaVtv  139 (303)
T 3ru6_A           76 DFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHAS----------AG------KIAIQEVMTRLSKFSKRPLVLAVSA  139 (303)
T ss_dssp             CCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGG----------GC------HHHHHHHHHHHTTSSSCCEEEEECS
T ss_pred             CCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEecc----------CC------HHHHHHHHHHHHhcCCCceEEEEEE
Confidence            34677666 45556666777776766 9999999852          11      334445555554322222    222


Q ss_pred             EecCCC---------C-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHH--
Q 020428          149 KIRLLK---------S-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYD--  215 (326)
Q Consensus       149 K~r~g~---------~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~--  215 (326)
                      .+..+.         + .+....+++...++|++++++++.          .   ++.|++.++ -.++..+||+-..  
T Consensus       140 LTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~dGvV~s~~----------E---~~~IR~~~~~~fl~VTPGIr~qG~~  206 (303)
T 3ru6_A          140 LTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVF----------E---SKKIKEHTSSNFLTLTPGIRPFGET  206 (303)
T ss_dssp             CTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTCSEEECCTT----------T---HHHHHHHSCTTSEEEECCCCTTC--
T ss_pred             ecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCCCEEEECHH----------H---HHHHHHhCCCccEEECCCcCcccCC
Confidence            222210         0 123456788888999999877322          1   456676663 4688899998221  


Q ss_pred             --------HHHHHHHhcCCcEEEeccchhcCc
Q 020428          216 --------DFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       216 --------d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                              ++.+++ ..|+|.+++||+++..+
T Consensus       207 ~~DQ~Rv~t~~~a~-~aGAd~iVvGr~I~~a~  237 (303)
T 3ru6_A          207 NDDQKRVANLAMAR-ENLSDYIVVGRPIYKNE  237 (303)
T ss_dssp             ------CCSHHHHH-HTTCSEEEECHHHHTSS
T ss_pred             cccccccCCHHHHH-HcCCCEEEEChHHhCCC
Confidence                    344566 58999999999988744

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=95.92  E-value=0.065  Score=50.45  Aligned_cols=109  Identities=18%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             cccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE-EeecccC-CC-CCCcCCHHHHHHH
Q 020428          121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA-VHGRKVA-DR-PRDPAKWGEIADI  197 (326)
Q Consensus       121 G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~-vh~r~~~-~~-~~~~~~~~~i~~i  197 (326)
                      |+..+.+.++    ++++. ..+.||.+|.....+.++....++.+.+.|..-|+ +|..+.. .. +....|+..+..+
T Consensus       232 gs~~~~n~~L----L~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~l  306 (385)
T 3nvt_A          232 GARNMQNFEL----LKAAG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPIL  306 (385)
T ss_dssp             CGGGTTCHHH----HHHHH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred             CcccccCHHH----HHHHH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHH
Confidence            4556666644    44443 46999999998877888999999999999986555 5532332 11 2345689999999


Q ss_pred             HHhcCCcEEEe----CCCCCH--HHHHHHHHhcCCcEEEeccch
Q 020428          198 VAALSIPVIAN----GDVFEY--DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       198 ~~~~~iPVi~n----GgI~s~--~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      ++..++||+..    +|-+..  .-+.... ..||||++|=+=.
T Consensus       307 k~~~~lpV~~D~th~~G~r~~v~~~a~AAv-A~GA~gl~iE~H~  349 (385)
T 3nvt_A          307 KKETHLPVMVDVTHSTGRKDLLLPCAKAAL-AIEADGVMAEVHP  349 (385)
T ss_dssp             HHHBSSCEEEEHHHHHCCGGGHHHHHHHHH-HTTCSEEEEEBCS
T ss_pred             HHhcCCCEEEcCCCCCCccchHHHHHHHHH-HhCCCEEEEEecC
Confidence            99889999654    222221  2344556 5899999998643

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=95.91  E-value=0.28  Score=43.88  Aligned_cols=119  Identities=14%  Similarity=0.145  Sum_probs=77.5

Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEe
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKI  150 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~  150 (326)
                      ..+.|+ +-+...|.-    .|+++.+ |+|.| +-..+- . ...-|+-..+.-..+.+..-+++|+..+ ..||++-+
T Consensus        26 ~~g~~i-~m~tayDa~----sA~l~e~aG~d~i-lvGdSl-~-~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~   97 (275)
T 3vav_A           26 EAGEKI-AMLTCYDAS----FAALLDRANVDVQ-LIGDSL-G-NVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADL   97 (275)
T ss_dssp             HHTCCE-EEEECCSHH----HHHHHHHTTCSEE-EECTTH-H-HHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEEC
T ss_pred             HCCCcE-EEEeCcCHH----HHHHHHHcCCCEE-EECcHH-H-HHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEec
Confidence            333344 345666633    3455555 89999 432111 1 1223333334445667777788888877 48899999


Q ss_pred             cCC--CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428          151 RLL--KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN  208 (326)
Q Consensus       151 r~g--~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n  208 (326)
                      ..|  .++++..+-+..+.++|+++|.+-+..        ...+.|+.+.+ .+|||++.
T Consensus        98 pfgsY~s~~~a~~~a~rl~kaGa~aVklEdg~--------~~~~~i~~l~~-~GIpv~gH  148 (275)
T 3vav_A           98 PFGTYGTPADAFASAVKLMRAGAQMVKFEGGE--------WLAETVRFLVE-RAVPVCAH  148 (275)
T ss_dssp             CTTSCSSHHHHHHHHHHHHHTTCSEEEEECCG--------GGHHHHHHHHH-TTCCEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEECCch--------hHHHHHHHHHH-CCCCEEEe
Confidence            875  467788888888888999999997652        12567777775 48999874

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=95.90  E-value=0.077  Score=51.88  Aligned_cols=88  Identities=19%  Similarity=0.308  Sum_probs=64.6

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------CCC----------
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------DRP----------  185 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------~~~----------  185 (326)
                      +.|.++.+-.+.+.+...++++.++++|+++|.||--...                           ..+          
T Consensus       246 ~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~  325 (511)
T 1kbi_A          246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF  325 (511)
T ss_dssp             SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred             CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhc
Confidence            4577777755566677788888999999998776532110                           000          


Q ss_pred             -CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          186 -RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       186 -~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                       .....|+.++.+++.+++||+.- |+.+.+++..+. +.|+|+|.++
T Consensus       326 ~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~-~aGad~I~vs  371 (511)
T 1kbi_A          326 IDPSLTWKDIEELKKKTKLPIVIK-GVQRTEDVIKAA-EIGVSGVVLS  371 (511)
T ss_dssp             BCTTCCHHHHHHHHHHCSSCEEEE-EECSHHHHHHHH-HTTCSEEEEC
T ss_pred             cChHhHHHHHHHHHHHhCCcEEEE-eCCCHHHHHHHH-HcCCCEEEEc
Confidence             11245999999999999999976 466799999888 6999999993

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=95.87  E-value=0.045  Score=49.58  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             HHHHHHHhh-cccCcEEEEecCCCChHHHHHHHHHHHH-cCCcEEEEeecccCC-----CCCCc--CCHHHHHHHHHhcC
Q 020428          132 HDILTMLKR-NLDVPVTCKIRLLKSSQDTVELARRIEK-TGVSALAVHGRKVAD-----RPRDP--AKWGEIADIVAALS  202 (326)
Q Consensus       132 ~~iv~~v~~-~~~~pv~vK~r~g~~~~~~~e~a~~l~~-~G~d~i~vh~r~~~~-----~~~~~--~~~~~i~~i~~~~~  202 (326)
                      .++++.+++ ..+.|+.+-+. +.+.++..+.++.+++ +|+|+|.+|-.....     .+...  .-.+.++++++.++
T Consensus        86 ~~~~~~~~~~~~~~p~~v~l~-~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~  164 (311)
T 1ep3_A           86 TEKLPWLNENFPELPIIANVA-GSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSK  164 (311)
T ss_dssp             HTHHHHHHHHCTTSCEEEEEC-CSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhcCCCCcEEEEEc-CCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcC
Confidence            335666665 33789888876 3467788999999998 999999987432110     01111  11567788888889


Q ss_pred             CcEEE--eCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          203 IPVIA--NGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       203 iPVi~--nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +||+.  ..++.+..++.+.+++.|+|+|.+
T Consensus       165 ~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v  195 (311)
T 1ep3_A          165 VPLYVKLSPNVTDIVPIAKAVEAAGADGLTM  195 (311)
T ss_dssp             SCEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHcCCCEEEE
Confidence            99875  346777777555555799999998

>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A

Probab=95.86  E-value=0.053  Score=50.13  Aligned_cols=123  Identities=8%  Similarity=0.021  Sum_probs=85.4

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKS  155 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~  155 (326)
                      |+-..+.|.+++++   .+.+..||..+-+-.|                  ++ -.+.++++|+.+ ++.+.+-..-+|+
T Consensus       121 ~~~~~~~g~~~e~~---~~~~~~G~~~~KiKvg------------------~~-d~~~v~avr~~~~~~~l~vDaN~~~~  178 (342)
T 2okt_A          121 AYGATASGLSNKQL---ESLKATKPTRIKLKWT------------------PQ-IMHQIRVLRELDFHFQLVIDANESLD  178 (342)
T ss_dssp             ECEEEESSCCHHHH---HHHHHHCCSEEEEECC------------------TT-HHHHHHHHTTSSSCCEEEEECTTCCC
T ss_pred             eeeEEEecCCHHHH---HHHHHcCCcEEEEEeC------------------HH-HHHHHHHHHHhCCCCeEEEECCCCCC
Confidence            34444424344444   3344459998888654                  23 357788888876 4556666666799


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+++ ++++.+++.++.+|-       |. ..+.|++..++  +.+++||.+.=.+.+..++.++++...+|.|++=
T Consensus       179 ~~~A-~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~--~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k  244 (342)
T 2okt_A          179 RQDF-TQLQLLAREQVLYIE-------EP-FKDISMLDEVA--DGTIPPIALDEKATSLLDIINLIELYNVKVVVLK  244 (342)
T ss_dssp             GGGH-HHHHHHGGGCEEEEE-------CC-CSSGGGGGGSC--TTSSCCEEESTTCCCHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHH-HHHHHHhhCCCcEEE-------CC-CCCccHHHHHH--hcCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEC
Confidence            9999 999999998877762       11 22334555544  5678999999899999999999976778988874

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=95.86  E-value=0.055  Score=49.00  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=75.3

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-cCCHHHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-PAKWGEIADIV  198 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~~~~~~i~~i~  198 (326)
                      .|+..+.+.+++.+    +. ..+.||.+|....-+.++....++.+.+.|.+-|++--|+..-.|.. ..|+..+..++
T Consensus       137 IgA~~~~n~~LLr~----va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk  211 (298)
T 3fs2_A          137 IPAFLCRQTDLLIA----AA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMA  211 (298)
T ss_dssp             ECGGGTTCHHHHHH----HH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHH
T ss_pred             ECccccCCHHHHHH----HH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHH
Confidence            46777888886554    33 45899999998766778888889999999988777644433222322 25888999999


Q ss_pred             HhcCCcEEEe---------------CCCCC--HHHHHHHHHhcCCcEEEeccch
Q 020428          199 AALSIPVIAN---------------GDVFE--YDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       199 ~~~~iPVi~n---------------GgI~s--~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      + .++||++.               ||-+.  +.-+.... ..||||++|=+=.
T Consensus       212 ~-~~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAv-AlGAdGl~IE~H~  263 (298)
T 3fs2_A          212 G-LGAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAV-AVGVAGFFIETHE  263 (298)
T ss_dssp             T-TTSCEEEEHHHHTCCCC--------CGGGHHHHHHHHH-HHCCSEEEEEEES
T ss_pred             H-cCCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHH-HcCCCEEEEEecC
Confidence            8 89999982               33222  23344556 5899999987643

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=95.85  E-value=0.044  Score=49.61  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             HHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEe
Q 020428          132 HDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIAN  208 (326)
Q Consensus       132 ~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~n  208 (326)
                      .+.++.+++.. ..|+.|-++       +.+.++.+.++|+|.|.+...+          .+.++++.+.+  ++.+.++
T Consensus       195 ~~Av~~ar~~~p~~kIeVEv~-------tl~e~~eAl~aGaDiImLDn~s----------~~~l~~av~~~~~~v~leaS  257 (300)
T 3l0g_A          195 TLAIQRLRKNLKNEYIAIECD-------NISQVEESLSNNVDMILLDNMS----------ISEIKKAVDIVNGKSVLEVS  257 (300)
T ss_dssp             HHHHHHHHHHSSSCCEEEEES-------SHHHHHHHHHTTCSEEEEESCC----------HHHHHHHHHHHTTSSEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEEC-------CHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHhhcCceEEEEE
Confidence            45566666553 456666553       3455666677899999997642          34555554433  6889999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      ||| |++.+.++. .+|+|.+.+|.-...-|
T Consensus       258 GGI-t~~~i~~~A-~tGVD~IsvGalthsa~  286 (300)
T 3l0g_A          258 GCV-NIRNVRNIA-LTGVDYISIGCITNSFQ  286 (300)
T ss_dssp             SSC-CTTTHHHHH-TTTCSEEECGGGTSSCC
T ss_pred             CCC-CHHHHHHHH-HcCCCEEEeCccccCCC
Confidence            999 578888888 69999999995433333

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=95.83  E-value=0.1  Score=47.23  Aligned_cols=119  Identities=13%  Similarity=0.066  Sum_probs=82.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      -|.+.+.+.++.+.+ |+++|=++.          ..|-+..-..+.-.++++.+.+.++- |.+-+. +.+..++++++
T Consensus        17 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~la   84 (293)
T 1w3i_A           17 IDKEKLKIHAENLIRKGIDKLFVNG----------TTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIRLA   84 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHHHH
Confidence            477788888887665 999998864          23444444677778888888887744 555543 25678999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCC-cC---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHH
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRD-PA---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQR  219 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~-~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~  219 (326)
                      +.++++|+|++.+..-    .|.. +.   -++.++.|.+++++||+ +|     |---+++.+.+
T Consensus        85 ~~A~~~Gadavlv~~P----~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~  146 (293)
T 1w3i_A           85 KLSKDFDIVGIASYAP----YYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE  146 (293)
T ss_dssp             HHGGGSCCSEEEEECC----CSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred             HHHHhcCCCEEEEcCC----CCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
Confidence            9999999999987632    2222 22   24566788888899976 45     32346666655

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=95.77  E-value=0.048  Score=47.36  Aligned_cols=93  Identities=14%  Similarity=0.173  Sum_probs=66.5

Q ss_pred             HHHHHHHhhcccCcEEEEecCC---CChH--HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          132 HDILTMLKRNLDVPVTCKIRLL---KSSQ--DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       132 ~~iv~~v~~~~~~pv~vK~r~g---~~~~--~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      .++++.++  -++++++....+   ...+  +..++++.++++|+++|++.            ..+.++.+++.+++|++
T Consensus         8 ~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~------------~~~~i~~i~~~~~~p~i   73 (234)
T 1yxy_A            8 EKLMEQLK--GGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN------------SVRDIKEIQAITDLPII   73 (234)
T ss_dssp             HHHHHHHT--TSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHTTCCSCEE
T ss_pred             HHHHHHHh--CCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC------------CHHHHHHHHHhCCCCEE
Confidence            34666662  245555555432   1245  78899999999999999874            24678899998999997


Q ss_pred             Ee-------CCC---CCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          207 AN-------GDV---FEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       207 ~n-------GgI---~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +.       +++   .+.+++..++ ..|||.|.++.....+|
T Consensus        74 ~~~~~~~~~~~~~i~~~~~~i~~~~-~~Gad~V~l~~~~~~~~  115 (234)
T 1yxy_A           74 GIIKKDYPPQEPFITATMTEVDQLA-ALNIAVIAMDCTKRDRH  115 (234)
T ss_dssp             EECBCCCTTSCCCBSCSHHHHHHHH-TTTCSEEEEECCSSCCT
T ss_pred             eeEcCCCCccccccCChHHHHHHHH-HcCCCEEEEcccccCCC
Confidence            42       222   2567888888 69999999998877666

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.75  E-value=0.014  Score=57.17  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +..+.++.+.++|+|.|.+|.-..   + ....++.++++++.+ ++||++ |+|.|.++++.+. +.|+|+|.+|.
T Consensus       255 ~~~~~a~~~~~aG~d~v~i~~~~G---~-~~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~-~aGad~I~vg~  325 (514)
T 1jcn_A          255 DDKYRLDLLTQAGVDVIVLDSSQG---N-SVYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLI-DAGVDGLRVGM  325 (514)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSCC---C-SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHH-HHTCSEEEECS
T ss_pred             hhHHHHHHHHHcCCCEEEeeccCC---c-chhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHH-HcCCCEEEECC
Confidence            357788888999999999976421   1 122468899999988 899986 7899999999998 68999999964

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=95.75  E-value=0.17  Score=47.45  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=78.5

Q ss_pred             cccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC-cEEEEeecccCCCCCCcCCHHHHHHHHH
Q 020428          121 GAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV-SALAVHGRKVADRPRDPAKWGEIADIVA  199 (326)
Q Consensus       121 G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~-d~i~vh~r~~~~~~~~~~~~~~i~~i~~  199 (326)
                      ||.-+.|..+++.+    . ..+.||.+|.... +.++....++.+.+.|. +.+.+|+-+.-.......|+..|..+++
T Consensus       141 gS~~~~N~pLL~~v----a-~~gKPViLStGma-Tl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~  214 (385)
T 1vli_A          141 ASYEINHLPLLKYV----A-RLNRPMIFSTAGA-EISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAA  214 (385)
T ss_dssp             CGGGTTCHHHHHHH----H-TTCSCEEEECTTC-CHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHH
T ss_pred             CcccccCHHHHHHH----H-hcCCeEEEECCCC-CHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHH
Confidence            45567777775554    3 3599999999875 78888888999999998 6777786543333334568889999999


Q ss_pred             hc-CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          200 AL-SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       200 ~~-~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      .. ++||..++--.. ..-..... ..||+  ||=+=+--+..+
T Consensus       215 ~f~~lpVG~SdHt~G~~~~~~AAv-AlGA~--iIEkHftldra~  255 (385)
T 1vli_A          215 AFPEAVIGFSDHSEHPTEAPCAAV-RLGAK--LIEKHFTIDKNL  255 (385)
T ss_dssp             HSTTSEEEEEECCSSSSHHHHHHH-HTTCS--EEEEEBCSCTTS
T ss_pred             HcCCCCEEeCCCCCCchHHHHHHH-HcCCC--EEEeCCCccccC
Confidence            98 899987754444 55666666 58998  555444334444

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=95.74  E-value=0.012  Score=57.51  Aligned_cols=69  Identities=20%  Similarity=0.292  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +..+.++.+.++|+|.|.++....    .....++.++++++.. ++||++ |++.+.+++..+. +.|||+|.+|
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a~g----~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~-~aGaD~I~Vg  300 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSSHG----HSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALI-EAGVSAVKVG  300 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHH-HHTCSEEEEC
T ss_pred             chHHHHHHHHhccCceEEeccccc----cchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHH-HhCCCEEEEC
Confidence            457788899999999999986531    1223467889999887 799988 8899999999998 6999999986

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=95.68  E-value=0.056  Score=48.27  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-----------------CHH
Q 020428          131 IHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-----------------KWG  192 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-----------------~~~  192 (326)
                      +.+.++.+++.-...+..=+-.| ++.+++.++++.++++|+|+|.+..-..+....||.                 -.+
T Consensus         4 ~~~~f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~   83 (268)
T 1qop_A            4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFE   83 (268)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHH
Confidence            44455555433222222222233 556889999999999999999995422222222221                 135


Q ss_pred             HHHHHHHh-cCCcEEEeCCCC-----C-HHHHHHHHHhcCCcEEEeccchh
Q 020428          193 EIADIVAA-LSIPVIANGDVF-----E-YDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       193 ~i~~i~~~-~~iPVi~nGgI~-----s-~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++++++. +++||++.+...     . .+.+..+. ..|+|++.+.-...
T Consensus        84 ~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~-~aGadgii~~d~~~  133 (268)
T 1qop_A           84 MLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCE-QVGVDSVLVADVPV  133 (268)
T ss_dssp             HHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHH-HHTCCEEEETTCCG
T ss_pred             HHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHH-HcCCCEEEEcCCCH
Confidence            68889888 899998754221     1 24444455 78999999864443

>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A

Probab=95.68  E-value=0.071  Score=50.73  Aligned_cols=95  Identities=6%  Similarity=0.066  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC--C
Q 020428          128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS--I  203 (326)
Q Consensus       128 p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--i  203 (326)
                      ++.-.+.++++++++  ++.+.+-..-+|+.++++++++.+++.++.+|       ++ +..+.|++..+++++.++  +
T Consensus       205 ~~~d~~~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i~~i-------Eq-Pl~~~d~~~~~~l~~~~~~~i  276 (415)
T 2p3z_A          205 IRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNLKWI-------EE-CLPPQQYEGYRELKRNAPAGM  276 (415)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEE-------EC-CSCTTCHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCceE-------eC-CCCcchHHHHHHHHHhcCCCC
Confidence            445567788888876  46666766667999999999999999988876       22 224558999999999887  8


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ||.+.=.+.+..++.++++.. +|.|++
T Consensus       277 pIa~dE~~~~~~~~~~~i~~~-~d~i~i  303 (415)
T 2p3z_A          277 MVTSGEHHGTLQSFRTLAETG-IDIMQP  303 (415)
T ss_dssp             EEEECTTCCSHHHHHHHHHTT-CSEECC
T ss_pred             cEEcCCCCCCHHHHHHHHHcC-CCEEEe
Confidence            988887889999999999654 998876

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=95.66  E-value=0.11  Score=46.06  Aligned_cols=102  Identities=12%  Similarity=0.096  Sum_probs=61.5

Q ss_pred             HHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-----------------CHH
Q 020428          131 IHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-----------------KWG  192 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-----------------~~~  192 (326)
                      +.+.++.+++.-...+..=+-.| ++.+++.++++.++++|+|.|.+-.-..+....+|.                 -++
T Consensus         4 ~~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~   83 (262)
T 2ekc_A            4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLE   83 (262)
T ss_dssp             HHHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHH
Confidence            34445555433122222222244 567889999999999999999994322221112221                 135


Q ss_pred             HHHHHHHhc-CCcEEEeCCCCC------HHHHHHHHHhcCCcEEEecc
Q 020428          193 EIADIVAAL-SIPVIANGDVFE------YDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       193 ~i~~i~~~~-~iPVi~nGgI~s------~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .++++++.+ ++|++..|....      .+.+..+. ..|+||+.+.-
T Consensus        84 ~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~-~aG~dgvii~d  130 (262)
T 2ekc_A           84 LSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSR-EKGIDGFIVPD  130 (262)
T ss_dssp             HHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHH-HTTCCEEECTT
T ss_pred             HHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHH-HcCCCEEEECC
Confidence            578888888 999998653321      23334444 79999999963

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=95.58  E-value=0.05  Score=46.16  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHH
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~s~~d~~~~l~  222 (326)
                      .|+..=+| +.+.++..++++.+.+.|++.|.+|.++.       ...+.++++++.++ -.+++.|-+.|++++..+. 
T Consensus        10 ~~~i~~~~-~~~~~~~~~~~~~~~~~G~~~iev~~~~~-------~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~-   80 (205)
T 1wa3_A           10 HKIVAVLR-ANSVEEAKEKALAVFEGGVHLIEITFTVP-------DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAV-   80 (205)
T ss_dssp             HCEEEEEC-CSSHHHHHHHHHHHHHTTCCEEEEETTST-------THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHH-
T ss_pred             CCEEEEEe-cCCHHHHHHHHHHHHHCCCCEEEEeCCCh-------hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHH-
Confidence            46666666 35678899999999999999999997642       12456788887652 2356677789999999998 


Q ss_pred             hcCCcEEEeccc
Q 020428          223 AAGASSVMAARG  234 (326)
Q Consensus       223 ~~Gad~VmiGr~  234 (326)
                      ..|||.| ++-+
T Consensus        81 ~~Gad~i-v~~~   91 (205)
T 1wa3_A           81 ESGAEFI-VSPH   91 (205)
T ss_dssp             HHTCSEE-ECSS
T ss_pred             HcCCCEE-EcCC
Confidence            5899999 7654

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=95.58  E-value=0.09  Score=46.98  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-----------------CCH
Q 020428          130 LIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP-----------------AKW  191 (326)
Q Consensus       130 ~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-----------------~~~  191 (326)
                      .+.+..+.+++.-...+..=+-.| ++.+.+.++++.++++|+|.|.+--=-.+....||                 .-+
T Consensus         4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~   83 (267)
T 3vnd_A            4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF   83 (267)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence            345556666554344455555555 57789999999999999999998522222222221                 115


Q ss_pred             HHHHHHHHh-cCCcEEEeCCCCC-----HHHHHHHHHhcCCcEEEeccchhc
Q 020428          192 GEIADIVAA-LSIPVIANGDVFE-----YDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       192 ~~i~~i~~~-~~iPVi~nGgI~s-----~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.++++++. +++||+.-|-...     .+...+...+.|+||+.+.---+.
T Consensus        84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~e  135 (267)
T 3vnd_A           84 DIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVE  135 (267)
T ss_dssp             HHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGG
T ss_pred             HHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHh
Confidence            778888887 8999988754321     254445555799999999654443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.48  E-value=0.15  Score=54.08  Aligned_cols=97  Identities=24%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             HHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC----CCC------cCCHHHHHHHHHhcCC
Q 020428          135 LTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR----PRD------PAKWGEIADIVAALSI  203 (326)
Q Consensus       135 v~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~----~~~------~~~~~~i~~i~~~~~i  203 (326)
                      +..+++.. +.|+.+-+-.+.+.++..+.++.++++|+|+|.+|.......    +..      ..-++.++.+++.+++
T Consensus       625 i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~  704 (1025)
T 1gte_A          625 VTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQI  704 (1025)
T ss_dssp             HHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCC
Confidence            45555544 678888886677888999999999999999999986533221    100      1124567788888899


Q ss_pred             cEE--EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          204 PVI--ANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       204 PVi--~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ||+  ...++.+..++.+.+++.|+|+|.+
T Consensus       705 Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v  734 (1025)
T 1gte_A          705 PFFAKLTPNVTDIVSIARAAKEGGADGVTA  734 (1025)
T ss_dssp             CEEEEECSCSSCHHHHHHHHHHHTCSEEEE
T ss_pred             ceEEEeCCChHHHHHHHHHHHHcCCCEEEE
Confidence            998  4677777777666666899999998

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=95.45  E-value=0.18  Score=45.32  Aligned_cols=124  Identities=15%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHH
Q 020428           89 RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIE  167 (326)
Q Consensus        89 ~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~  167 (326)
                      .+.+-++.+.+ |+|+|=+.+=-|..           --|.+.+.++++...   +.+++.- |..+...+..+..+.+.
T Consensus       112 ~M~~dI~~~~~~GAdGvVfG~L~~dg-----------~iD~~~~~~Li~~a~---~l~vTFH-RAFD~~~d~~~Ale~Li  176 (287)
T 3iwp_A          112 VMKADIRLAKLYGADGLVFGALTEDG-----------HIDKELCMSLMAICR---PLPVTFH-RAFDMVHDPMAALETLL  176 (287)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCBCTTS-----------CBCHHHHHHHHHHHT---TSCEEEC-GGGGGCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeeeCCCC-----------CcCHHHHHHHHHHcC---CCcEEEE-CchhccCCHHHHHHHHH
Confidence            44455555555 99998874311322           136778888888764   3566653 22111124566677788


Q ss_pred             HcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          168 KTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.|++.|..+|-.    .+.....+.++++.+..  +++|++.|||+ .+.+.++++.+|++.+=..
T Consensus       177 ~lGvdrILTSG~~----~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~-~~Ni~~l~~~tG~~~~H~S  238 (287)
T 3iwp_A          177 TLGFERVLTSGCD----SSALEGLPLIKRLIEQAKGRIVVMPGGGIT-DRNLQRILEGSGATEFHCS  238 (287)
T ss_dssp             HHTCSEEEECTTS----SSTTTTHHHHHHHHHHHTTSSEEEECTTCC-TTTHHHHHHHHCCSEEEEC
T ss_pred             HcCCCEEECCCCC----CChHHhHHHHHHHHHHhCCCCEEEECCCcC-HHHHHHHHHhhCCCEEeEC
Confidence            8899999887752    22344678888877654  49999999996 5667788867999877553

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.39  E-value=0.034  Score=54.05  Aligned_cols=71  Identities=23%  Similarity=0.330  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .+..+.++.+.++|+|.|.++....    .....|+.++++++.+ ++||+. |++.|.+++..+. +.|+|+|.+|-
T Consensus       236 ~~~~~~a~~l~~aGvd~v~i~~~~G----~~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~-~~G~d~I~v~~  307 (494)
T 1vrd_A          236 PETMERVEKLVKAGVDVIVIDTAHG----HSRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALI-KAGADAVKVGV  307 (494)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSCC----SSHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHH-HTTCSEEEECS
T ss_pred             HhHHHHHHHHHHhCCCEEEEEecCC----chHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHH-HcCCCEEEEcC
Confidence            3456788899999999999975311    1123578899999988 799877 7789999998888 69999999954

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=95.39  E-value=0.16  Score=47.34  Aligned_cols=96  Identities=13%  Similarity=0.105  Sum_probs=70.5

Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecCCCC---------------------------------hHHHHHHHHHHHHcCCc
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRLLKS---------------------------------SQDTVELARRIEKTGVS  172 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~---------------------------------~~~~~e~a~~l~~~G~d  172 (326)
                      ..++.+.+.++.+++.++.|+.|.+-....                                 .....+.++.+.+.|++
T Consensus        45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~  124 (369)
T 3bw2_A           45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVP  124 (369)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCS
T ss_pred             CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCC
Confidence            457888888899988777787776533111                                 01135667888899999


Q ss_pred             EEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe-cc
Q 020428          173 ALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA-AR  233 (326)
Q Consensus       173 ~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi-Gr  233 (326)
                      .|.+|...        ...+.++++++ .++||+.  .+.|.+++..+. ..|+|+|.+ |+
T Consensus       125 ~V~~~~g~--------~~~~~i~~~~~-~g~~v~~--~v~t~~~a~~a~-~~GaD~i~v~g~  174 (369)
T 3bw2_A          125 VVSFHFGV--------PDREVIARLRR-AGTLTLV--TATTPEEARAVE-AAGADAVIAQGV  174 (369)
T ss_dssp             EEEEESSC--------CCHHHHHHHHH-TTCEEEE--EESSHHHHHHHH-HTTCSEEEEECT
T ss_pred             EEEEeCCC--------CcHHHHHHHHH-CCCeEEE--ECCCHHHHHHHH-HcCCCEEEEeCC
Confidence            99998642        24678888876 4788776  578999998887 699999999 64

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=95.39  E-value=0.12  Score=47.52  Aligned_cols=90  Identities=22%  Similarity=0.261  Sum_probs=70.1

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      +++.+.+.++.+++.++.|+.|.+-.. + .+..+.++.+.+.|+|.|++|+..       |  .+.++.+++ .++||+
T Consensus        61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~-~-~~~~~~~~~~~~~g~d~V~l~~g~-------p--~~~~~~l~~-~g~~v~  128 (326)
T 3bo9_A           61 KPDDLRKAISELRQKTDKPFGVNIILV-S-PWADDLVKVCIEEKVPVVTFGAGN-------P--TKYIRELKE-NGTKVI  128 (326)
T ss_dssp             CHHHHHHHHHHHHTTCSSCEEEEEETT-S-TTHHHHHHHHHHTTCSEEEEESSC-------C--HHHHHHHHH-TTCEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEEecc-C-CCHHHHHHHHHHCCCCEEEECCCC-------c--HHHHHHHHH-cCCcEE
Confidence            688899999999988888998887541 1 234677788889999999998742       2  456667665 478887


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      .  ++.+.+++..+. ..|+|+|.+
T Consensus       129 ~--~v~s~~~a~~a~-~~GaD~i~v  150 (326)
T 3bo9_A          129 P--VVASDSLARMVE-RAGADAVIA  150 (326)
T ss_dssp             E--EESSHHHHHHHH-HTTCSCEEE
T ss_pred             E--EcCCHHHHHHHH-HcCCCEEEE
Confidence            5  688999999888 689999998

>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}

Probab=95.38  E-value=0.12  Score=49.33  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=70.3

Q ss_pred             ChHHHHHHHHHHhhc---c--cCcEEEEe-----------c---CCCChHHHHHHHHH-HHHcCCcEEEEeecccCCCCC
Q 020428          127 KPELIHDILTMLKRN---L--DVPVTCKI-----------R---LLKSSQDTVELARR-IEKTGVSALAVHGRKVADRPR  186 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~---~--~~pv~vK~-----------r---~g~~~~~~~e~a~~-l~~~G~d~i~vh~r~~~~~~~  186 (326)
                      +.+.+.-++++++++   +  ++.+.+-.           .   .+|+.++.+++++. ++++++.+|       + .+.
T Consensus       217 ~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~I-------E-dPl  288 (428)
T 3tqp_A          217 NEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISI-------E-DGL  288 (428)
T ss_dssp             HHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEE-------E-CCS
T ss_pred             HHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceE-------e-CCC
Confidence            444555668899988   6  45555544           1   25788899999997 898987665       1 223


Q ss_pred             CcCCHHHHHHHHHhcCCcEEEeCC---CCCHHHHHHHHHhcCCcEEEec
Q 020428          187 DPAKWGEIADIVAALSIPVIANGD---VFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       187 ~~~~~~~i~~i~~~~~iPVi~nGg---I~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+-||+..+++.+.++.||-..|+   ++++.++.++++...+|.+++=
T Consensus       289 ~~dD~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iK  337 (428)
T 3tqp_A          289 SENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVK  337 (428)
T ss_dssp             CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred             CcccHHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEec
Confidence            456899999999998867644455   4499999999976667888764

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=95.37  E-value=0.044  Score=49.58  Aligned_cols=83  Identities=22%  Similarity=0.201  Sum_probs=60.0

Q ss_pred             ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec-c----cCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHH
Q 020428          142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR-K----VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDD  216 (326)
Q Consensus       142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r-~----~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d  216 (326)
                      ...|+.+-++.       .++++.+.++|++.|++-.. .    ..+......+.+.++++++.+++|++.+.++.+.++
T Consensus        20 ~~~~~i~~~~~-------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~   92 (297)
T 2zbt_A           20 FKGGVIMDVTT-------PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVE   92 (297)
T ss_dssp             GTTEEEEEESS-------HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHH
T ss_pred             hhCCeeeeech-------HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHH
Confidence            34566665542       78999999999999987210 0    011111234678899999999999999888888888


Q ss_pred             HHHHHHhcCCcEEEecc
Q 020428          217 FQRIKTAAGASSVMAAR  233 (326)
Q Consensus       217 ~~~~l~~~Gad~VmiGr  233 (326)
                      ++.++ ..|||+| .|.
T Consensus        93 ~~~~~-~aGad~v-~~~  107 (297)
T 2zbt_A           93 AMILE-AIGVDFI-DES  107 (297)
T ss_dssp             HHHHH-HTTCSEE-EEE
T ss_pred             HHHHH-HCCCCEE-eee
Confidence            88888 6999999 443

>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A

Probab=95.35  E-value=0.055  Score=52.13  Aligned_cols=97  Identities=11%  Similarity=0.131  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCc
Q 020428          128 PELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIP  204 (326)
Q Consensus       128 p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iP  204 (326)
                      ++.-.+.++++|+++  ++++.+-..-+|+..+++++++.+++.++.+|-       + +..+-|++.++++++.+ .+|
T Consensus       199 ~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~Ai~~~~~Le~~~l~~iE-------E-Pl~~dd~~~la~L~~~~~~iP  270 (455)
T 3fxg_A          199 LRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLNINWWE-------E-CLSPDDTDGFALIKRAHPTVK  270 (455)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHTGGGCCSEEE-------C-CSCGGGGGGHHHHHHHCTTSE
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHhcccCCcceec-------C-CCCcchHHHHHHHHHhCCCCe
Confidence            455667788888887  578888888889999999999999999998762       2 22345788889999887 478


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |.+.=.+.|..++.++++...+|.+++=
T Consensus       271 IA~gEs~~s~~d~~~li~~~avDiiq~d  298 (455)
T 3fxg_A          271 FTTGEHEYSRYGFRKLVEGRNLDIIQPD  298 (455)
T ss_dssp             EEECTTCCHHHHHHHHHTTCCCSEECCC
T ss_pred             EECCCccCCHHHHHHHHHcCCCCEEEEC
Confidence            8877789999999999965567887663

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A

Probab=95.28  E-value=0.091  Score=47.40  Aligned_cols=109  Identities=16%  Similarity=0.168  Sum_probs=73.1

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCC------cEEEEeecccCCCCCC-cCCHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGV------SALAVHGRKVADRPRD-PAKWG  192 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~------d~i~vh~r~~~~~~~~-~~~~~  192 (326)
                      .|+..+.+.+++.    ++. .++.||.+|....-+.++....++.+.+.|.      +-|++--|+..-.|.. ..|+.
T Consensus       113 IgA~~~~n~~LLr----~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vdl~  187 (288)
T 3tml_A          113 TPAFLCRQTDFIH----ACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMR  187 (288)
T ss_dssp             ECGGGTTCHHHHH----HHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECCHH
T ss_pred             ECcccccCHHHHH----HHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCCHH
Confidence            4577788888644    443 5699999999876567777888888888887      5555433433223322 25899


Q ss_pred             HHHHHHHhcCCcEEEe---------------CCCCCH--HHHHHHHHhcCCcEEEeccch
Q 020428          193 EIADIVAALSIPVIAN---------------GDVFEY--DDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       193 ~i~~i~~~~~iPVi~n---------------GgI~s~--~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .+..+++ .++||++.               ||-+..  .-+.... ..||||++|=+=.
T Consensus       188 ~i~~lk~-~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAv-A~GadGl~iE~H~  245 (288)
T 3tml_A          188 SLAIMRE-TNAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAV-ATGVAGLFMETHP  245 (288)
T ss_dssp             HHHHGGG-GSSCEEEEHHHHTCCCC--------CTTHHHHHHHHHH-HHCCSEEEEEEES
T ss_pred             HHHHHHh-cCCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHH-HcCCCEEEEeecc
Confidence            9999988 89999882               443332  2345556 5899999987643

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=95.27  E-value=0.071  Score=48.48  Aligned_cols=77  Identities=22%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHcCCcEEEEeec----cc-CCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          158 DTVELARRIEKTGVSALAVHGR----KV-ADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r----~~-~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++.++++.++++|+++|++...    .+ ........+.+.++++++.+++||+++-.+...++++.++ ..|||+|. +
T Consensus        29 ~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~-a~GAd~V~-~  106 (305)
T 2nv1_A           29 INAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLE-AMGVDYID-E  106 (305)
T ss_dssp             SSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHH-HHTCSEEE-E
T ss_pred             CHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHH-HCCCCEEE-E
Confidence            4568899999999999965421    11 1111123468899999999999998643333377777777 59999996 6


Q ss_pred             cchh
Q 020428          233 RGAL  236 (326)
Q Consensus       233 r~~l  236 (326)
                      ...+
T Consensus       107 ~~~l  110 (305)
T 2nv1_A          107 SEVL  110 (305)
T ss_dssp             CTTS
T ss_pred             eccC
Confidence            6555

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=95.25  E-value=0.22  Score=44.67  Aligned_cols=134  Identities=16%  Similarity=0.203  Sum_probs=84.0

Q ss_pred             HHHhhc-CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC--ChHHHHHHHHHHHHc
Q 020428           94 AKMVCK-DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK--SSQDTVELARRIEKT  169 (326)
Q Consensus        94 a~~~~~-~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~--~~~~~~e~a~~l~~~  169 (326)
                      |+++.+ |++.|=+.- +.-  .  ..|+-....-..+.+...++.|...++.||++-+-.|+  ++.+..+.++.+.++
T Consensus        29 A~~~~~aG~~ai~vsg~s~a--~--~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~a  104 (275)
T 2ze3_A           29 ARLLEAAGFTAIGTTSAGIA--H--ARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAAL  104 (275)
T ss_dssp             HHHHHHHTCSCEEECHHHHH--H--HSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCEEEECcHHHH--H--hCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHc
Confidence            334444 888887752 111  1  12333333456677888888998888999999999974  577899999999999


Q ss_pred             CCcEEEEeecccCCCCCCcCCH----HHHHHHHHh---cCCcEEEeCCCCC--------H-HHHHHHH------HhcCCc
Q 020428          170 GVSALAVHGRKVADRPRDPAKW----GEIADIVAA---LSIPVIANGDVFE--------Y-DDFQRIK------TAAGAS  227 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~----~~i~~i~~~---~~iPVi~nGgI~s--------~-~d~~~~l------~~~Gad  227 (326)
                      |+++|++-+...... +.-.+.    +.|+.+++.   .++|+..+|-...        . +.+.+++      ++.|||
T Consensus       105 Gaagv~iED~~~~~~-k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd  183 (275)
T 2ze3_A          105 GVAGVNLEDATGLTP-TELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGAD  183 (275)
T ss_dssp             TCSEEEEECBCSSSS-SCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCcEEEECCCcCCCC-CccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCC
Confidence            999999987653211 111222    234444443   2678776664433        1 2233332      357999


Q ss_pred             EEEec
Q 020428          228 SVMAA  232 (326)
Q Consensus       228 ~VmiG  232 (326)
                      ++.+=
T Consensus       184 ~i~~e  188 (275)
T 2ze3_A          184 GIFVP  188 (275)
T ss_dssp             EEECT
T ss_pred             EEEEC
Confidence            99873

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=95.22  E-value=0.033  Score=54.35  Aligned_cols=72  Identities=18%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .+..+.++.|.++|+|.|+|..-.  +. + ..-.+.++.|++.. ++||| .|+|.|++.++.++ ..|||+|-||-|
T Consensus       280 ~d~~eR~~aLv~AGvD~iviD~ah--Gh-s-~~v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li-~aGAD~vkVGiG  352 (556)
T 4af0_A          280 PGDKDRLKLLAEAGLDVVVLDSSQ--GN-S-VYQIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLI-AAGADGLRIGMG  352 (556)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECCSC--CC-S-HHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHH-HHTCSEEEECSS
T ss_pred             ccHHHHHHHHHhcCCcEEEEeccc--cc-c-HHHHHHHHHHHhhCCcceEE-eccccCHHHHHHHH-HcCCCEEeecCC
Confidence            467888999999999999985321  11 1 11367888888876 56655 58999999999999 699999999865

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=95.20  E-value=0.12  Score=46.37  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-------------C----CH
Q 020428          130 LIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP-------------A----KW  191 (326)
Q Consensus       130 ~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-------------~----~~  191 (326)
                      .+.+..+.+++.-...+..=+-.| ++.+.+.++++.++++|+|.|.+--=-.+....||             .    -+
T Consensus         6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~   85 (271)
T 3nav_A            6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF   85 (271)
T ss_dssp             HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence            355666666655344455555556 67889999999999999999998522222111121             1    15


Q ss_pred             HHHHHHHHh-cCCcEEEeCCCC-----CHHHHHHHHHhcCCcEEEeccchh
Q 020428          192 GEIADIVAA-LSIPVIANGDVF-----EYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       192 ~~i~~i~~~-~~iPVi~nGgI~-----s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.++++++. +++||+.-|-..     ..+...+...+.|+|||.+.---+
T Consensus        86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~  136 (271)
T 3nav_A           86 ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPT  136 (271)
T ss_dssp             HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCG
T ss_pred             HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCH
Confidence            678888887 799998876322     234444444579999999964433

>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A

Probab=95.20  E-value=0.088  Score=50.31  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=57.6

Q ss_pred             CCCChHHHHHHHHHHHH-cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeC-CCCCHHHHHHHHHhcCCc
Q 020428          152 LLKSSQDTVELARRIEK-TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANG-DVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nG-gI~s~~d~~~~l~~~Gad  227 (326)
                      .+|+.++.+++++.+++ +++.+|       + .+..+-||+..+++++.+  ++||.+.= -++++.++.++++...+|
T Consensus       265 ~~~t~~~ai~~~~~L~~~~~i~~i-------E-ePl~~~d~~~~~~l~~~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d  336 (431)
T 2fym_A          265 KAFTSEEFTHFLEELTKQYPIVSI-------E-DGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIAN  336 (431)
T ss_dssp             EEECHHHHHHHHHHHHHHSCEEEE-------E-SCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCS
T ss_pred             CCCCHHHHHHHHHHHHHhCCceEE-------E-CCCCcccHHHHHHHHHHhCCCCeEEeCCcccCCHHHHHHHHHhCCCC
Confidence            44788899999999988 876554       1 223456899999999998  89988766 689999999999766689


Q ss_pred             EEEe
Q 020428          228 SVMA  231 (326)
Q Consensus       228 ~Vmi  231 (326)
                      .|++
T Consensus       337 ~i~i  340 (431)
T 2fym_A          337 SILI  340 (431)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8887

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=95.20  E-value=0.14  Score=48.29  Aligned_cols=88  Identities=19%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC------------------------------C-------CC
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA------------------------------D-------RP  185 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~------------------------------~-------~~  185 (326)
                      +.|+.+.+=...+.+...++++.++++|++.|.+.--+..                              +       ..
T Consensus       146 ~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~  225 (392)
T 2nzl_A          146 EALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS  225 (392)
T ss_dssp             TSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------
T ss_pred             CCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcc
Confidence            4677777643346667788888888889888877421100                              0       00


Q ss_pred             ----------CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          186 ----------RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       186 ----------~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                                .....|+.++.+++.+++||+.- |+.+++++..+. +.|+|+|.++
T Consensus       226 ~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~-~aGad~I~vs  280 (392)
T 2nzl_A          226 GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAK-GILRGDDAREAV-KHGLNGILVS  280 (392)
T ss_dssp             CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEE-EECCHHHHHHHH-HTTCCEEEEC
T ss_pred             hHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEE-ecCCHHHHHHHH-HcCCCEEEeC
Confidence                      11247899999999999999876 468999999988 6999999994

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=95.17  E-value=0.033  Score=52.79  Aligned_cols=69  Identities=19%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +..+.++.+.++|+|.|.++...   .+ ....|+.++.+++.+ ++||++ |++.+.++++.+. +.|+|+|.+|
T Consensus       153 ~~~~~a~~~~~~G~d~i~i~~~~---g~-~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~-~~Gad~I~vg  222 (404)
T 1eep_A          153 DTIERVEELVKAHVDILVIDSAH---GH-STRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLI-SVGADCLKVG  222 (404)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSC---CS-SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHH-TTTCSEEEEC
T ss_pred             hHHHHHHHHHHCCCCEEEEeCCC---CC-hHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHH-hcCCCEEEEC
Confidence            35667788889999999985321   11 123478889999988 899987 7788999999888 6999999994

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=95.16  E-value=0.26  Score=45.80  Aligned_cols=128  Identities=8%  Similarity=0.019  Sum_probs=74.8

Q ss_pred             CCCEEEEc-------cCCCccccccccccccccC-----C--hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428          100 DVAAIDIN-------MGCPKSFSVSGGMGAALLS-----K--PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus       100 ~~d~idlN-------~gcP~~~~~~~~~G~~l~~-----~--p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      |+.+|++-       -|.|.+...+-.  .++++     +  .+...+-++..++..+.||.+-+ .|.+.++..+.++.
T Consensus        71 G~G~v~~ktvt~~pq~GNp~PR~~~~~--~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI-~G~~~~d~~~~a~~  147 (354)
T 4ef8_A           71 ASGSLVSKSCTPALREGNPTPRYQALP--LGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSM-SGLSMRENVEMCKR  147 (354)
T ss_dssp             SCSCEEEEEECSSCBCCSCSCCEEEET--TEEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEE-CCSSHHHHHHHHHH
T ss_pred             CCCeEEeCcccCcccCCCCCCcEEecc--hhhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEe-ccCCHHHHHHHHHH
Confidence            77777774       355555443322  22333     2  23333333333333478888876 36778899999999


Q ss_pred             HH---HcCCcEEEEeecccCC--CCCCcCC----HHHHHHHHHhcCCcEEE--eCCCCCHHHHHHH---HHhcC-CcEEE
Q 020428          166 IE---KTGVSALAVHGRKVAD--RPRDPAK----WGEIADIVAALSIPVIA--NGDVFEYDDFQRI---KTAAG-ASSVM  230 (326)
Q Consensus       166 l~---~~G~d~i~vh~r~~~~--~~~~~~~----~~~i~~i~~~~~iPVi~--nGgI~s~~d~~~~---l~~~G-ad~Vm  230 (326)
                      ++   +.|+|+|.+.-.....  ...-..+    .++++.+++.+++||+.  .-++ +.+++.++   +++.| +|+|.
T Consensus       148 l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~-d~~~~~~~a~~~~~~Gg~d~I~  226 (354)
T 4ef8_A          148 LAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYF-DFAHFDAAAEILNEFPKVQFIT  226 (354)
T ss_dssp             HHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCC-SHHHHHHHHHHHHTCTTEEEEE
T ss_pred             HhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCCC-CHHHHHHHHHHHHhCCCccEEE
Confidence            98   6799999986442211  1000113    34566677778899873  3333 45555444   44677 99997


Q ss_pred             e
Q 020428          231 A  231 (326)
Q Consensus       231 i  231 (326)
                      +
T Consensus       227 ~  227 (354)
T 4ef8_A          227 C  227 (354)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=95.16  E-value=0.25  Score=43.41  Aligned_cols=133  Identities=10%  Similarity=0.082  Sum_probs=77.3

Q ss_pred             CcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--Cc-E-EEE
Q 020428           76 NHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VP-V-TCK  149 (326)
Q Consensus        76 ~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~p-v-~vK  149 (326)
                      .++++-+ .+..|+....+++.+.+ |+|.|.+|.-.          |      ++.+...++.+++. +  .| + .+.
T Consensus        66 ~~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~~----------g------~~~l~~~~~~~~~~-G~~~~~~l~v~  128 (245)
T 1eix_A           66 FDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG----------G------ARMMTAAREALVPF-GKDAPLLIAVT  128 (245)
T ss_dssp             CCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGG----------C------HHHHHHHHHTTGGG-GGGCCEEEEEC
T ss_pred             CcEEEEeeccccHHHHHHHHHHHHhCCCCEEEEeccC----------C------HHHHHHHHHHHHHc-CCCCCcEEEEE
Confidence            3555554 34667776666666666 99999998521          1      22344555555442 2  23 1 222


Q ss_pred             ecCCCC------------h-HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHH
Q 020428          150 IRLLKS------------S-QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYD  215 (326)
Q Consensus       150 ~r~g~~------------~-~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~  215 (326)
                      .....+            . +....++....+.|.+.++...            ++ ++++++.. +.+++..|||+...
T Consensus       129 ~~ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~------------~e-i~~lr~~~~~~~i~v~gGI~~~g  195 (245)
T 1eix_A          129 VLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSA------------QE-AVRFKQVFGQEFKLVTPGIRPQG  195 (245)
T ss_dssp             SCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCG------------GG-HHHHHHHHCSSSEEEECCBCCTT
T ss_pred             ecCCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCH------------HH-HHHHHHhcCCCCEEEECCcCCCC
Confidence            211111            1 1122233334567888765432            24 56666655 46899999998421


Q ss_pred             ----------HHHHHHHhcCCcEEEeccchhcCc
Q 020428          216 ----------DFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       216 ----------d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                                .+.+++ +.|+|.+.+||+++..+
T Consensus       196 ~~~~dq~rv~t~~~a~-~aGad~iVvGr~I~~a~  228 (245)
T 1eix_A          196 SEAGDQRRIMTPEQAL-SAGVDYMVIGRPVTQSV  228 (245)
T ss_dssp             CCCTTCCSCBCHHHHH-HTTCSEEEECHHHHTSS
T ss_pred             CCccchhccCCHHHHH-HcCCCEEEECHHHcCCC
Confidence                      466677 68999999999988654

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=95.15  E-value=0.095  Score=45.45  Aligned_cols=133  Identities=13%  Similarity=0.132  Sum_probs=80.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEcc--CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINM--GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~--gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .++..|...|...+.+.++.+.+ |+|.+.+-.  |.-.++         +    ..-.++++++++.++.|+.+-+-. 
T Consensus         8 ~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~---------~----~~~~~~~~~lr~~~~~~~~v~lmv-   73 (228)
T 1h1y_A            8 KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPN---------L----TIGAPVIQSLRKHTKAYLDCHLMV-   73 (228)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC---------B----CBCHHHHHHHHTTCCSEEEEEEES-
T ss_pred             eEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcc---------h----hhCHHHHHHHHhhcCCcEEEEEEe-
Confidence            46778888888888888888766 889765542  211111         0    111256777777766677655543 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhc--CCcEE
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAA--GASSV  229 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~--Gad~V  229 (326)
                      .++   .++++.+.++|+|.|++|+-...      .. .+.++++++. ++.++..=.-.|+ +.++.++ ..  ++|.|
T Consensus        74 ~d~---~~~i~~~~~agad~v~vH~~~~~------~~~~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~-~~~~~~d~v  142 (228)
T 1h1y_A           74 TNP---SDYVEPLAKAGASGFTFHIEVSR------DNWQELIQSIKAK-GMRPGVSLRPGTPVEEVFPLV-EAENPVELV  142 (228)
T ss_dssp             SCG---GGGHHHHHHHTCSEEEEEGGGCT------TTHHHHHHHHHHT-TCEEEEEECTTSCGGGGHHHH-HSSSCCSEE
T ss_pred             cCH---HHHHHHHHHcCCCEEEECCCCcc------cHHHHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHH-hcCCCCCEE
Confidence            333   34566677799999999987432      12 3556666554 5655543333444 3444444 44  89999


Q ss_pred             Eeccc
Q 020428          230 MAARG  234 (326)
Q Consensus       230 miGr~  234 (326)
                      .+++-
T Consensus       143 l~~sv  147 (228)
T 1h1y_A          143 LVMTV  147 (228)
T ss_dssp             EEESS
T ss_pred             EEEee
Confidence            98643

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=95.12  E-value=0.68  Score=41.56  Aligned_cols=135  Identities=15%  Similarity=0.138  Sum_probs=89.0

Q ss_pred             EEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C--
Q 020428           78 VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L--  153 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g--  153 (326)
                      +.+-++..+.++...|.   +.|+|-|||+.+-..         +.+--.+    .+++.+++.+++||-+=+|.  |  
T Consensus        40 ~~lEvc~~s~~~a~~A~---~gGAdRIELc~~l~~---------GGlTPS~----g~i~~a~~~~~ipV~vMIRPRgGdF  103 (287)
T 3iwp_A           40 FLMEVCVDSVESAVNAE---RGGADRIELCSGLSE---------GGTTPSM----GVLQVVKQSVQIPVFVMIRPRGGDF  103 (287)
T ss_dssp             SEEEEEESSHHHHHHHH---HHTCSEEEECBCGGG---------TCBCCCH----HHHHHHHTTCCSCEEEECCSSSSCS
T ss_pred             ceEEEEeCCHHHHHHHH---HhCCCEEEECCCCCC---------CCCCCCH----HHHHHHHHhcCCCeEEEEecCCCCc
Confidence            56677777766555432   248999999733111         1111112    34666677778999988887  3  


Q ss_pred             -CChH---HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCC---CCCHHHHHHHHHhcC
Q 020428          154 -KSSQ---DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGD---VFEYDDFQRIKTAAG  225 (326)
Q Consensus       154 -~~~~---~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGg---I~s~~d~~~~l~~~G  225 (326)
                       .+..   .-.+-++.+.++|+|+|+++.-+.+    +..|.+..+++.+.. .++|...=-   +.++..+.+.+...|
T Consensus       104 ~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~d----g~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lG  179 (287)
T 3iwp_A          104 LYSDREIEVMKADIRLAKLYGADGLVFGALTED----GHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLG  179 (287)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT----SCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCC----CCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcC
Confidence             2333   3456678888999999999877655    456888888776653 578876654   345766666665679


Q ss_pred             CcEEEec
Q 020428          226 ASSVMAA  232 (326)
Q Consensus       226 ad~VmiG  232 (326)
                      ++.|.-+
T Consensus       180 vdrILTS  186 (287)
T 3iwp_A          180 FERVLTS  186 (287)
T ss_dssp             CSEEEEC
T ss_pred             CCEEECC
Confidence            9998774

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=95.12  E-value=0.22  Score=44.36  Aligned_cols=96  Identities=11%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      .+++...+.|+.+. +|+|.||||+|.            .....++.+.+++..+.+.+++||++-..   +    .+++
T Consensus        22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~------------~~v~~~ee~~rvv~~i~~~~~~pisIDT~---~----~~v~   82 (262)
T 1f6y_A           22 RDPAPVQEWARRQEEGGARALDLNVGP------------AVQDKVSAMEWLVEVTQEVSNLTLCLDST---N----IKAI   82 (262)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECS---C----HHHH
T ss_pred             CCHHHHHHHHHHHHHCCCcEEEECCCC------------CCCChHHHHHHHHHHHHHhCCCeEEEeCC---C----HHHH
Confidence            35666665555544 499999999753            23356788999999998877999999774   2    2445


Q ss_pred             HHHHHc--CCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          164 RRIEKT--GVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       164 ~~l~~~--G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      +...++  |++.|. |++.        ..+++.+..+....+.|+|+
T Consensus        83 ~aAl~a~~Ga~iINdvs~~--------~d~~~~~~~~~a~~~~~vvl  121 (262)
T 1f6y_A           83 EAGLKKCKNRAMINSTNAE--------REKVEKLFPLAVEHGAALIG  121 (262)
T ss_dssp             HHHHHHCSSCEEEEEECSC--------HHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHhhCCCCCEEEECCCC--------cccHHHHHHHHHHhCCcEEE
Confidence            555555  888875 5543        11243455566667889887

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=95.10  E-value=1.7  Score=38.51  Aligned_cols=135  Identities=13%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             CCcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--c--CcEEE
Q 020428           75 RNHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--D--VPVTC  148 (326)
Q Consensus        75 ~~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~--~pv~v  148 (326)
                      +.+++.-+ ++.-|.....+++.+.+ |+|.+.+|...          |      ++.+...++...+..  +  .|..+
T Consensus        56 g~~VflDlK~~DIpnTv~~a~~~~~~~gad~vTVh~~~----------G------~~~~~aa~~~~~~~~~~g~~~~~li  119 (259)
T 3tfx_A           56 GYKIFLDLKMHDIPNTVYNGAKALAKLGITFTTVHALG----------G------SQMIKSAKDGLIAGTPAGHSVPKLL  119 (259)
T ss_dssp             TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGG----------C------HHHHHHHHHHHHHHSCTTSCCCEEE
T ss_pred             CCcEEEEecccccchHHHHHHHHHHhcCCCEEEEcCCC----------C------HHHHHHHHHHHHHhcccCCCCceEE
Confidence            45677777 45557777777777777 99999998521          1      234444455543311  1  22111


Q ss_pred             Ee-cC-CCC--------------hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCC
Q 020428          149 KI-RL-LKS--------------SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDV  211 (326)
Q Consensus       149 K~-r~-g~~--------------~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI  211 (326)
                      -+ -+ ..+              .+...++++...++|++++++.+.          .   ++.+++.+ +-.++..+||
T Consensus       120 ~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G~dGvV~s~~----------e---~~~ir~~~~~~f~~vtPGI  186 (259)
T 3tfx_A          120 AVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSPL----------E---VKKLHENIGDDFLYVTPGI  186 (259)
T ss_dssp             EECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTTCCEEECCGG----------G---HHHHHHHHCSSSEEEECCC
T ss_pred             EEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEECHH----------H---HHHHHhhcCCccEEEcCCc
Confidence            11 11 111              134567888889999999987421          2   34555554 3446778888


Q ss_pred             CCHH----H------HHHHHHhcCCcEEEeccchhcCc
Q 020428          212 FEYD----D------FQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       212 ~s~~----d------~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      +-..    |      ..+++ ..|+|.+++||+++..+
T Consensus       187 r~~g~~~gDQ~Rv~T~~~a~-~aGad~iVvGr~I~~a~  223 (259)
T 3tfx_A          187 RPAGNAKDDQSRVATPKMAK-EWGSSAIVVGRPITLAS  223 (259)
T ss_dssp             CCC-----------CHHHHH-HTTCSEEEECHHHHTSS
T ss_pred             CCCCCCcCCccccCCHHHHH-HcCCCEEEEChHHhCCC
Confidence            7431    1      55667 68999999999977643

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=95.10  E-value=0.15  Score=46.85  Aligned_cols=92  Identities=22%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      +++.+.+.++.+++.++.|+.|.+-.. + .+..+.++.+.++|+|.|.+|+..       |  .+.++.+++ .++||+
T Consensus        47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~-~-~~~~~~~~~a~~~g~d~V~~~~g~-------p--~~~i~~l~~-~g~~v~  114 (332)
T 2z6i_A           47 PKEVVKANIDKIKSLTDKPFGVNIMLL-S-PFVEDIVDLVIEEGVKVVTTGAGN-------P--SKYMERFHE-AGIIVI  114 (332)
T ss_dssp             CHHHHHHHHHHHHHHCCSCEEEEECTT-S-TTHHHHHHHHHHTTCSEEEECSSC-------G--GGTHHHHHH-TTCEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEecCC-C-CCHHHHHHHHHHCCCCEEEECCCC-------h--HHHHHHHHH-cCCeEE
Confidence            577888889999887788988877541 1 134567888889999999999742       2  345666665 488888


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEe-cc
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVMA-AR  233 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~Vmi-Gr  233 (326)
                      .  .+.+.+++..+. +.|+|++.+ |+
T Consensus       115 ~--~v~~~~~a~~~~-~~GaD~i~v~g~  139 (332)
T 2z6i_A          115 P--VVPSVALAKRME-KIGADAVIAEGM  139 (332)
T ss_dssp             E--EESSHHHHHHHH-HTTCSCEEEECT
T ss_pred             E--EeCCHHHHHHHH-HcCCCEEEEECC
Confidence            5  478999998877 689999999 54

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=95.07  E-value=0.48  Score=42.07  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=86.1

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g  153 (326)
                      .|++ -+...|.-    .|+++.+ |+|.|=+  |-.... ..-|+-..+.-..+.+..-+++|+..++. +|.+-+.-|
T Consensus        17 ~~i~-~~tayD~~----sA~l~e~aG~d~ilv--Gdsl~~-~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfg   88 (264)
T 1m3u_A           17 KRFA-TITAYDYS----FAKLFADEGLNVMLV--GDSLGM-TVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFM   88 (264)
T ss_dssp             CCEE-EEECCSHH----HHHHHHHHTCCEEEE--CTTHHH-HTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTT
T ss_pred             CcEE-EEeCcCHH----HHHHHHHcCCCEEEE--CHHHHH-HHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            3443 45666633    3455555 9999866  322221 22344444455567777788888887765 456665542


Q ss_pred             -C-ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE-----------eCCC----CCHHH
Q 020428          154 -K-SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA-----------NGDV----FEYDD  216 (326)
Q Consensus       154 -~-~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~-----------nGgI----~s~~d  216 (326)
                       . +++++.+-+..+.++|+++|.+-+..        ...+.|+.+.+ .+|||++           .||.    +|.+.
T Consensus        89 sy~~~~~a~~~a~rl~kaGa~aVklEgg~--------e~~~~I~al~~-agipV~gHiGLtPq~v~~~ggf~v~grt~~~  159 (264)
T 1m3u_A           89 AYATPEQAFENAATVMRAGANMVKIEGGE--------WLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEA  159 (264)
T ss_dssp             SSSSHHHHHHHHHHHHHTTCSEEECCCSG--------GGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCCEEEECCcH--------HHHHHHHHHHH-CCCCeEeeecCCceeecccCCeEEEeCCHHH
Confidence             2 67788888889999999999987641        12455666654 3799983           3554    34443


Q ss_pred             HHHHH------HhcCCcEEEe
Q 020428          217 FQRIK------TAAGASSVMA  231 (326)
Q Consensus       217 ~~~~l------~~~Gad~Vmi  231 (326)
                      +.+++      ++.||+++.+
T Consensus       160 a~~~i~rA~a~~eAGA~~ivl  180 (264)
T 1m3u_A          160 GDQLLSDALALEAAGAQLLVL  180 (264)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHHHCCCcEEEE
Confidence            44333      3579998876

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=95.06  E-value=0.6  Score=40.91  Aligned_cols=134  Identities=11%  Similarity=0.102  Sum_probs=78.3

Q ss_pred             CcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc--cc--Cc--EE
Q 020428           76 NHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN--LD--VP--VT  147 (326)
Q Consensus        76 ~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~--~~--~p--v~  147 (326)
                      .++++-+ ++..|+....+++.+.+ |+|.|.+|.-          .|      ++.+...++.+++.  .+  .|  +.
T Consensus        56 ~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH~~----------~g------~~~l~~~~~~~~~~~~~G~~~~~~la  119 (246)
T 2yyu_A           56 HAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAA----------GG------RRMMEAAIEGLDAGTPSGRMRPRCIA  119 (246)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGG----------GC------HHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred             CeEEEEeecccchHHHHHHHHHHHhcCCCEEEEECC----------CC------HHHHHHHHHHHHhhcccCCcCCCEEE
Confidence            3555554 34667776666666666 9999999852          11      23345666666652  23  34  32


Q ss_pred             EEecCCCChHH--------------HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeCCCC
Q 020428          148 CKIRLLKSSQD--------------TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANGDVF  212 (326)
Q Consensus       148 vK~r~g~~~~~--------------~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nGgI~  212 (326)
                      +......+.++              ...++....+.|.+.++...            ++ ++++++..+ .+++..|||+
T Consensus       120 v~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~------------~e-i~~lr~~~~~~~i~V~gGI~  186 (246)
T 2yyu_A          120 VTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSA------------NE-AAFIKERCGASFLAVTPGIR  186 (246)
T ss_dssp             ESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECCH------------HH-HHHHHHHHCTTSEEEECCCC
T ss_pred             EEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeCH------------HH-HHHHHHhcCCCCEEEeCCcC
Confidence            33222211111              12222223567888765432            34 666776553 5689999997


Q ss_pred             CH-H---------HHHHHHHhcCCcEEEeccchhcCc
Q 020428          213 EY-D---------DFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       213 s~-~---------d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      .. .         .+.+++ +.|+|.+.+||+++..+
T Consensus       187 ~~g~~~~dq~rv~t~~~a~-~aGad~iVvGr~I~~a~  222 (246)
T 2yyu_A          187 FADDAAHDQVRVVTPRKAR-ALGSDYIVIGRSLTRAA  222 (246)
T ss_dssp             CCC-------CCCCHHHHH-HHTCSEEEECHHHHTSS
T ss_pred             CCCCCcccccccCCHHHHH-HcCCCEEEECHhhcCCC
Confidence            42 1         356667 58999999999988643

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=95.01  E-value=0.29  Score=44.58  Aligned_cols=94  Identities=12%  Similarity=0.133  Sum_probs=64.4

Q ss_pred             HHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE-EecCCCChHHHHHHHHHHHHcCCc-
Q 020428           95 KMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC-KIRLLKSSQDTVELARRIEKTGVS-  172 (326)
Q Consensus        95 ~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v-K~r~g~~~~~~~e~a~~l~~~G~d-  172 (326)
                      +++..|+|.||||+.+-.|        .+.-..++...++++.+++.+++|+++ -+   .+++.-.++++...++|++ 
T Consensus        82 ~~v~~GAdiIDIg~~StrP--------~~~~vs~eee~~vV~~v~~~~~vplsI~DT---~~~~~~~~V~eaal~aga~~  150 (310)
T 2h9a_B           82 KCVEYGADIVALRLVSAHP--------DGQNRSGAELAEVCKAVADAIDVPLMIIGC---GVEEKDAEIFPVIGEALSGR  150 (310)
T ss_dssp             HHHHTTCSEEEEECGGGCT--------TTTCCCHHHHHHHHHHHHHHCSSCEEEECC---SCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHcCCcEEEEeCccCCC--------CCCCCCHHHHHHHHHHHHHhCCceEEEECC---CCCCCCHHHHHHHHHhCCCC
Confidence            4454599999999863222        122345677777999999888999998 65   2344456778888888987 


Q ss_pred             --EEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          173 --ALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       173 --~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                        .|. +++         . +++.+..+....+.||++.-
T Consensus       151 k~iINdvs~---------~-~~~~~~~~aa~~g~~vv~m~  180 (310)
T 2h9a_B          151 NCLLSSATK---------D-NYKPIVATCMVHGHSVVASA  180 (310)
T ss_dssp             CCEEEEECT---------T-THHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEECCC---------C-ccHHHHHHHHHhCCCEEEEC
Confidence              332 322         1 45666667777899998765

>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*

Probab=95.00  E-value=0.11  Score=49.30  Aligned_cols=97  Identities=13%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             HHHHHHHHhhcc--cCcEEEEecC------CCChHHHHHHHHHHHHcCCcE-EEEeecccCCCCC-C--cCCHHHHHHHH
Q 020428          131 IHDILTMLKRNL--DVPVTCKIRL------LKSSQDTVELARRIEKTGVSA-LAVHGRKVADRPR-D--PAKWGEIADIV  198 (326)
Q Consensus       131 ~~~iv~~v~~~~--~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~-i~vh~r~~~~~~~-~--~~~~~~i~~i~  198 (326)
                      ..+.++++|+.+  ++.+.+-..-      +|+.++++++++.+++.|+.. +.+     ++... +  +.||+..++++
T Consensus       218 d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~i-----EqP~~~~~~~~d~~~~~~l~  292 (413)
T 1kko_A          218 LSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAIT  292 (413)
T ss_dssp             HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEE-----ECCcCCCCCcccHHHHHHHH
Confidence            337889998887  4566666666      689999999999999976541 111     22211 1  45889999999


Q ss_pred             Hh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          199 AA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       199 ~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.     +++||.+.=.++|.+++.++++...+|.|++=
T Consensus       293 ~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik  331 (413)
T 1kko_A          293 KELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIK  331 (413)
T ss_dssp             HHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             HhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence            88     88999998889999999999976568888774

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=95.00  E-value=0.23  Score=43.09  Aligned_cols=80  Identities=25%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      |+..=+|. .+.++..++++.+.+.|++.|.+.-++       +...+.++++++.++--+++.|-+.+.+++..++ ..
T Consensus        18 ~ii~vir~-~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~-~a   88 (224)
T 1vhc_A           18 KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRS-------EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAK-SS   88 (224)
T ss_dssp             CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHH-HH
T ss_pred             CeEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEeccC-------chHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHH-HC
Confidence            55555664 567789999999999999999886432       2346788888888754466777899999999999 69


Q ss_pred             CCcEEEecc
Q 020428          225 GASSVMAAR  233 (326)
Q Consensus       225 Gad~VmiGr  233 (326)
                      |||+|..|.
T Consensus        89 GAd~v~~p~   97 (224)
T 1vhc_A           89 GADFVVTPG   97 (224)
T ss_dssp             TCSEEECSS
T ss_pred             CCCEEEECC
Confidence            999999883

>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1

Probab=94.97  E-value=0.061  Score=49.34  Aligned_cols=121  Identities=9%  Similarity=0.160  Sum_probs=81.9

Q ss_pred             EECCCCHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHH
Q 020428           81 QMGTSDAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~  158 (326)
                      .+.+.+++.+.+.++.. .+|+..+-+..|.                +  ...+.++++++.+ ++.+.+-..-+|+.++
T Consensus       127 ~~~~~~~e~~~~~a~~~~~~G~~~~KiKvg~----------------~--~d~~~v~avr~~~~~~~l~vDaN~~~~~~~  188 (324)
T 1jpd_X          127 TVVIGTPDQMANSASTLWQAGAKLLKVKLDN----------------H--LISERMVAIRTAVPDATLIVDANESWRAEG  188 (324)
T ss_dssp             EECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------S--CHHHHHHHHHHHCTTSEEEEECTTCCCSTT
T ss_pred             EeeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------c--hHHHHHHHHHHhCCCCEEEEECcCCCCHHH
Confidence            35556888887666654 4599999886551                1  1234567777765 4556666655788889


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +.++++.+++.++.+|-       |. ..+.|++.+++++  .++||.+.=.+.+..++.++++ . +|.+++
T Consensus       189 a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~--~~ipIa~dE~~~~~~~~~~~~~-~-~~~i~i  249 (324)
T 1jpd_X          189 LAARCQLLADLGVAMLE-------QP-LPAQDDAALENFI--HPLPICADESCHTRSNLKALKG-R-YEMVNI  249 (324)
T ss_dssp             HHHHHHHHHHTTCCEEE-------CC-SCTTSCGGGGSSC--CSSCEEESTTCSSGGGHHHHBT-T-BSEEEE
T ss_pred             HHHHHHHHHhCCCCEEE-------CC-CCCCCHHHHHhcc--CCCCEEEcCCCCCHHHHHHHHh-h-CCEEEE
Confidence            99999999999988762       11 1223444444442  5899998888999999998884 2 565554

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=94.92  E-value=1.8  Score=38.12  Aligned_cols=140  Identities=13%  Similarity=0.151  Sum_probs=92.4

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC-
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL-  152 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~-  152 (326)
                      +.+++-|.+.+.+++...++.+. .++|.||+=..+=..           ..+.+.+.+.+..+++.+ ++|+.+-+|. 
T Consensus        20 p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~-----------~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~   88 (257)
T 2yr1_A           20 PCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRA-----------IDDQERVLATANGLRNIAGEIPILFTIRSE   88 (257)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTT-----------TTCHHHHHHHHHHHHHHSSSCCEEEECCCT
T ss_pred             cEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccc-----------cCcHHHHHHHHHHHHHhccCCCEEEEEeec
Confidence            35889999999998877676644 489999996532111           124678888999999887 8999998886 


Q ss_pred             ---C-C---ChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC----CCCHHHHHHH
Q 020428          153 ---L-K---SSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQRI  220 (326)
Q Consensus       153 ---g-~---~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg----I~s~~d~~~~  220 (326)
                         | +   +.+...++.+.+.+.| +|+|.|--...      . ....+.+.....+..||++=-    --+.+++...
T Consensus        89 ~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~------~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~  161 (257)
T 2yr1_A           89 REGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYG------E-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLAD  161 (257)
T ss_dssp             TTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGT------T-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCC------h-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHH
Confidence               2 2   3466788888888888 99999965421      1 122222222345677887632    2333555444


Q ss_pred             H---HhcCCcEEEecc
Q 020428          221 K---TAAGASSVMAAR  233 (326)
Q Consensus       221 l---~~~Gad~VmiGr  233 (326)
                      +   ...|||.|=++.
T Consensus       162 ~~~~~~~gaDivKia~  177 (257)
T 2yr1_A          162 MRQAERYGADIAKVAV  177 (257)
T ss_dssp             HHHHHHTTCSEEEEEE
T ss_pred             HHHHHhcCCCEEEEEe
Confidence            3   257898776654

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=94.86  E-value=0.36  Score=44.89  Aligned_cols=82  Identities=9%  Similarity=-0.006  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+.++.+.+ |+++|=++..          .|-+..-..+.-.++++.+.+.+  .+||.+-+. ..+..++++
T Consensus        77 ID~~al~~lv~~li~~Gv~Gl~v~GT----------TGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~eai~  145 (360)
T 4dpp_A           77 FDLEAYDDLVNIQIQNGAEGVIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTG-SNSTREAIH  145 (360)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeccc----------ccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecC-CCCHHHHHH
Confidence            367788888887655 9999988642          33333334555566777766655  578887663 257889999


Q ss_pred             HHHHHHHcCCcEEEEe
Q 020428          162 LARRIEKTGVSALAVH  177 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh  177 (326)
                      +++.++++|+|++.+.
T Consensus       146 la~~A~~~Gadavlvv  161 (360)
T 4dpp_A          146 ATEQGFAVGMHAALHI  161 (360)
T ss_dssp             HHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHcCCCEEEEc
Confidence            9999999999999875

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=94.86  E-value=0.57  Score=41.34  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C---CChHH---HHHHHHHHHHcC
Q 020428           99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L---KSSQD---TVELARRIEKTG  170 (326)
Q Consensus        99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g---~~~~~---~~e~a~~l~~~G  170 (326)
                      .|+|-|||+.+=..         +.+--...    +++.+++.+++||.|=+|.  |   ++..+   -.+-++.+.++|
T Consensus        20 ~GAdRIELc~~L~~---------GGlTPS~g----~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~G   86 (256)
T 1twd_A           20 NGADRVELCAAPKE---------GGLTPSLG----VLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG   86 (256)
T ss_dssp             TTCSEEEECBCGGG---------TCBCCCHH----HHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEcCCccc---------CCCCCCHH----HHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence            48999999743110         11111122    3455667778999999988  3   23333   455567888999


Q ss_pred             CcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCC---CCCHHHHHHHHHhcCCcEEEe
Q 020428          171 VSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGD---VFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       171 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGg---I~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +|+|++-.-+.+    +..|.+.++++.+.. ++|+..-=-   +.++..+.+.+...|++.|.-
T Consensus        87 adGvV~G~Lt~d----g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILT  147 (256)
T 1twd_A           87 FPGLVTGVLDVD----GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLT  147 (256)
T ss_dssp             CSEEEECCBCTT----SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEE
T ss_pred             CCEEEEeeECCC----CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEEC
Confidence            999988666554    567899988887654 677764322   356777666665789988863

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A

Probab=94.85  E-value=0.8  Score=43.41  Aligned_cols=151  Identities=11%  Similarity=0.059  Sum_probs=92.5

Q ss_pred             CcEEEEE---CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc---ccCcEEE
Q 020428           76 NHVVFQM---GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN---LDVPVTC  148 (326)
Q Consensus        76 ~p~~vQl---~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~---~~~pv~v  148 (326)
                      .|+++-+   +|+ +....+.++.+.+ |+.+|.|.=....++.+....|..|. ..+...+-|++++.+   .+.++.+
T Consensus       153 lPviaD~DtGyG~-~~~v~~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv-~~~e~~~rI~Aa~~A~~~~~~d~~I  230 (435)
T 3lg3_A          153 LPIVADAEAGFGG-VLNAFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLV-PTQEAIQKLVAARLAADVLGVPTLL  230 (435)
T ss_dssp             CCEEEECTTCSSS-HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEEC-CHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCeEEECCCCCCC-cHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCCeec-CHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            6899988   344 4467777777766 99999997554334433333344444 455444445555443   2555555


Q ss_pred             EecCC--------------------------------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428          149 KIRLL--------------------------------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       149 K~r~g--------------------------------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                      --|..                                ...+++++-++.+.+ |+|.|-++..        ..+.+.+++
T Consensus       231 iARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E~~--------~~~~~ei~~  301 (435)
T 3lg3_A          231 IARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCETS--------TPDLALAKR  301 (435)
T ss_dssp             EEEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEECCS--------SCCHHHHHH
T ss_pred             EEEcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEecCC--------CCCHHHHHH
Confidence            44542                                235678888888888 9999999753        336777777


Q ss_pred             HHHhcC--Cc--EE-EeCC-CCC------HHHHH---HHHHhcCCcEEEeccchhc
Q 020428          197 IVAALS--IP--VI-ANGD-VFE------YDDFQ---RIKTAAGASSVMAARGALW  237 (326)
Q Consensus       197 i~~~~~--iP--Vi-~nGg-I~s------~~d~~---~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.++  .|  ++ +|.. .++      .+++.   +-|...|...|.++-+.+.
T Consensus       302 f~~~v~~~~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~lG~~~v~~~la~~r  357 (435)
T 3lg3_A          302 FADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQFITLAGIH  357 (435)
T ss_dssp             HHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEEETTHHHH
T ss_pred             HHHHhccccCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHcCCcEEEeCcHHHH
Confidence            776653  33  33 4432 233      33332   2344689999999877664

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=94.81  E-value=0.18  Score=45.71  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=61.1

Q ss_pred             ccCcEEEEecCCCChHHHHHHHHHHHHcCCc---EEEEeecccCCCC-CC-cCC----HHHHHHHHHhcCCcEEE--eCC
Q 020428          142 LDVPVTCKIRLLKSSQDTVELARRIEKTGVS---ALAVHGRKVADRP-RD-PAK----WGEIADIVAALSIPVIA--NGD  210 (326)
Q Consensus       142 ~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d---~i~vh~r~~~~~~-~~-~~~----~~~i~~i~~~~~iPVi~--nGg  210 (326)
                      .+.|+.+-+. +.+.++..+.++.++++|+|   +|.+|-....... .. ..+    ++.++.+++.+++||+.  .++
T Consensus        92 ~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~  170 (314)
T 2e6f_A           92 SKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY  170 (314)
T ss_dssp             TTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred             CCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            3789988886 56788999999999999999   9999854222100 00 112    45677888888999874  455


Q ss_pred             CCCHHHH---HHHHHhcC-CcEEEec
Q 020428          211 VFEYDDF---QRIKTAAG-ASSVMAA  232 (326)
Q Consensus       211 I~s~~d~---~~~l~~~G-ad~VmiG  232 (326)
                      + +.+++   .+.+++.| +|++.+-
T Consensus       171 ~-~~~~~~~~a~~~~~aG~~d~i~v~  195 (314)
T 2e6f_A          171 F-DIAHFDTAAAVLNEFPLVKFVTCV  195 (314)
T ss_dssp             C-CHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred             C-CHHHHHHHHHHHHhcCCceEEEEe
Confidence            4 66663   33345789 9999754

>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A

Probab=94.79  E-value=0.18  Score=48.37  Aligned_cols=71  Identities=14%  Similarity=0.281  Sum_probs=56.3

Q ss_pred             CChHHHHHHHHHHHH-cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCC-CCCHHHHHHHHHhcCCcEE
Q 020428          154 KSSQDTVELARRIEK-TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGD-VFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGg-I~s~~d~~~~l~~~Gad~V  229 (326)
                      |+.++++++++.+.+ +++.+|       ++ +..+.||+..+++++.+  ++||++.-- ++++.++.++++...+|.|
T Consensus       279 ~t~~eai~~~~~l~~~~~i~~i-------Ee-Pl~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i  350 (444)
T 1w6t_A          279 RTSAEQIDYLEELVNKYPIITI-------ED-GMDENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSI  350 (444)
T ss_dssp             ECHHHHHHHHHHHHHHSCEEEE-------ES-CSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEE
T ss_pred             CCHHHHHHHHHHHHHhCCcEEE-------EC-CCChhhHHHHHHHHHhhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEE
Confidence            678889999998864 876654       22 23456899999999998  899987776 8999999999976668988


Q ss_pred             Eec
Q 020428          230 MAA  232 (326)
Q Consensus       230 miG  232 (326)
                      ++=
T Consensus       351 ~ik  353 (444)
T 1w6t_A          351 LIK  353 (444)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            774

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=94.79  E-value=0.097  Score=51.20  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +..+.++.+.++|+|.|.+..-..    ....-++.++++++.. ++||++ |+|.|.++++.+. +.|+|+|.+|-
T Consensus       256 d~~era~aLveaGvd~I~Id~a~g----~~~~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~-~aGad~i~vg~  326 (511)
T 3usb_A          256 DAMTRIDALVKASVDAIVLDTAHG----HSQGVIDKVKEVRAKYPSLNIIA-GNVATAEATKALI-EAGANVVKVGI  326 (511)
T ss_dssp             THHHHHHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHH-HHTCSEEEECS
T ss_pred             chHHHHHHHHhhccceEEeccccc----chhhhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHH-HhCCCEEEECC
Confidence            457778899999999999974421    1122357888998886 477774 7899999999999 68999999854

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=94.74  E-value=0.56  Score=41.89  Aligned_cols=115  Identities=12%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccC-cEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV-PVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~-pv~vK~r~g  153 (326)
                      .|++ -+...|.-    .|+++.+ |+|.|=+  |--... ..-|+-..+.-..+.+...+++|+..++. +|.+-+.-|
T Consensus        17 ~~i~-~~tayDa~----sA~l~e~aG~d~ilv--GdSl~~-~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfg   88 (275)
T 1o66_A           17 EKIA-MLTAYESS----FAALMDDAGVEMLLV--GDSLGM-AVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFG   88 (275)
T ss_dssp             CCEE-EEECCSHH----HHHHHHHTTCCEEEE--CTTHHH-HTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTT
T ss_pred             CcEE-EEeCcCHH----HHHHHHHcCCCEEEE--CHHHHH-HHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence            3443 45666633    4455555 8998833  322221 22344444555677888888888888765 466666553


Q ss_pred             ---CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          154 ---KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       154 ---~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                         .+++++.+-+..+.++|+++|.+-+..        .-.+.|+.+.+ .+|||++
T Consensus        89 sy~~s~~~a~~na~rl~kaGa~aVklEdg~--------e~~~~I~al~~-agIpV~g  136 (275)
T 1o66_A           89 AYQQSKEQAFAAAAELMAAGAHMVKLEGGV--------WMAETTEFLQM-RGIPVCA  136 (275)
T ss_dssp             SSSSCHHHHHHHHHHHHHTTCSEEEEECSG--------GGHHHHHHHHH-TTCCEEE
T ss_pred             CccCCHHHHHHHHHHHHHcCCcEEEECCcH--------HHHHHHHHHHH-cCCCeEe
Confidence               257888888889999999999997751        12455666654 3899983

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=94.73  E-value=0.96  Score=39.33  Aligned_cols=135  Identities=14%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             CcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc--ccC--c--EE
Q 020428           76 NHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN--LDV--P--VT  147 (326)
Q Consensus        76 ~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~--~~~--p--v~  147 (326)
                      .++++-+ ++..|+....+++.+.+ |+|.|.+|.-          .|      .+.+..+++.+++.  .+.  |  +.
T Consensus        55 ~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~----------~g------~~~l~~~~~~~~~~~~~g~~~~~~~~  118 (239)
T 1dbt_A           55 CELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAA----------GG------KKMMQAALEGLEEGTPAGKKRPSLIA  118 (239)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGG----------GC------HHHHHHHHHHHHHHSCTTSCCCEEEE
T ss_pred             CcEEEEeccccchHHHHHHHHHHHhcCCCEEEEeCc----------CC------HHHHHHHHHHHHhhhccCCCCccEEE
Confidence            3555554 34667777767766666 9999999852          11      22344555666543  132  3  44


Q ss_pred             EEecCCCChHH--------------HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCC
Q 020428          148 CKIRLLKSSQD--------------TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVF  212 (326)
Q Consensus       148 vK~r~g~~~~~--------------~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~  212 (326)
                      |-.....+.+.              ...++....+.|.+.++...             +-++++++.. +.+++..|||+
T Consensus       119 V~~~ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~-------------~~i~~lr~~~~~~~i~v~gGI~  185 (239)
T 1dbt_A          119 VTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV-------------HEAKAIYQAVSPSFLTVTPGIR  185 (239)
T ss_dssp             ECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG-------------GGHHHHTTTSCTTCEEEECCBC
T ss_pred             EEEcCCCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH-------------HHHHHHHHhcCCCcEEEeCCcC
Confidence            43332221111              12222323667888765543             1244555554 36899999998


Q ss_pred             CHHH----------HHHHHHhcCCcEEEeccchhcCcc
Q 020428          213 EYDD----------FQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       213 s~~d----------~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ....          ..+++ +.|+|.+.+||+++..+.
T Consensus       186 ~~~~~~~dq~rv~tp~~a~-~aGad~iVvGr~I~~a~d  222 (239)
T 1dbt_A          186 MSEDAANDQVRVATPAIAR-EKGSSAIVVGRSITKAED  222 (239)
T ss_dssp             CTTSCCTTCSSCBCHHHHH-HTTCSEEEECHHHHTSSC
T ss_pred             CCCCCccceeccCCHHHHH-HcCCCEEEEChhhcCCCC
Confidence            5332          25667 689999999999886543

>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A

Probab=94.71  E-value=0.17  Score=48.05  Aligned_cols=95  Identities=7%  Similarity=0.062  Sum_probs=72.1

Q ss_pred             HHHHHHHHhhcc--cCcEEEEecCC------CChHHHHHHHHHHHHc--CCc-EEEEeecccCCCCC---CcCCHHHHHH
Q 020428          131 IHDILTMLKRNL--DVPVTCKIRLL------KSSQDTVELARRIEKT--GVS-ALAVHGRKVADRPR---DPAKWGEIAD  196 (326)
Q Consensus       131 ~~~iv~~v~~~~--~~pv~vK~r~g------~~~~~~~e~a~~l~~~--G~d-~i~vh~r~~~~~~~---~~~~~~~i~~  196 (326)
                      -.+.++++|+.+  ++.+.+-..-+      |+.++++++++.+++.  ++. +|       ++...   .+.|++..++
T Consensus       218 d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i~~~i-------EqP~~~~~~~~d~~~~~~  290 (413)
T 1kcz_A          218 LRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRI-------EGPMDVEDRQKQMEAMRD  290 (413)
T ss_dssp             HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEEE-------ECSBCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCcceEE-------ecCCCCCCCcccHHHHHH
Confidence            457788898877  35555665556      8999999999999998  665 43       11110   1237889999


Q ss_pred             HHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          197 IVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       197 i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++.     +++||.+.=.++|.+++.++++...+|.|++=
T Consensus       291 l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik  331 (413)
T 1kcz_A          291 LRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIK  331 (413)
T ss_dssp             HHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEEC
T ss_pred             HHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence            9988     78999988889999999999976668888775

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=94.70  E-value=0.3  Score=44.08  Aligned_cols=92  Identities=14%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             ECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHH
Q 020428           82 MGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDT  159 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~  159 (326)
                      +...|+-    .|+++.+ |++.|=+.-.+ ...+  .|+-....-..+.+...++.|...++.||++-+-.|+ ++.+.
T Consensus        20 ~~a~D~~----sA~~~~~aG~~ai~vs~~~-~a~~--~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~   92 (290)
T 2hjp_A           20 MAAHNPL----VAKLAEQAGFGGIWGSGFE-LSAS--YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNV   92 (290)
T ss_dssp             EECSSHH----HHHHHHHHTCSEEEECHHH-HHHH--TTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHH
T ss_pred             ecCCCHH----HHHHHHHcCCCEEEEChHH-HHHh--CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHH
Confidence            5556643    3344444 89988775210 0000  2333333456678888889999999999999998874 56788


Q ss_pred             HHHHHHHHHcCCcEEEEeecc
Q 020428          160 VELARRIEKTGVSALAVHGRK  180 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~  180 (326)
                      .+.++.+.++|+++|++-+..
T Consensus        93 ~~~v~~l~~aGa~gv~iED~~  113 (290)
T 2hjp_A           93 HYVVPQYEAAGASAIVMEDKT  113 (290)
T ss_dssp             HHHHHHHHHHTCSEEEEECBC
T ss_pred             HHHHHHHHHhCCeEEEEcCCC
Confidence            999999999999999998765

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=94.67  E-value=0.39  Score=43.52  Aligned_cols=149  Identities=17%  Similarity=0.122  Sum_probs=85.9

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .|++ =+...|+-.    |+++.+ |++.|=+.- ++-.   ...|+-....-..+.+...++.|...++.||++-+-.|
T Consensus        22 ~~i~-~~~a~D~~s----A~l~e~aGf~ai~vs~~s~a~---~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~G   93 (298)
T 3eoo_A           22 QPLQ-VVGAITAYA----AKMAEAVGFKAVYLSGGGVAA---NSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTG   93 (298)
T ss_dssp             SSEE-EEECSSHHH----HHHHHHHTCSCEEECHHHHHH---HTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTC
T ss_pred             CcEE-EecCCCHHH----HHHHHHcCCCEEEECcHHHHH---HhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCC
Confidence            3443 345566432    333444 888887642 1110   01122222234566777778888888899999999987


Q ss_pred             C-ChHHHHHHHHHHHHcCCcEEEEeecccCCCC---CC--cCCH-HHHHHHHHh---c-CCcEEEeC--CCCCHHHHHHH
Q 020428          154 K-SSQDTVELARRIEKTGVSALAVHGRKVADRP---RD--PAKW-GEIADIVAA---L-SIPVIANG--DVFEYDDFQRI  220 (326)
Q Consensus       154 ~-~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~---~~--~~~~-~~i~~i~~~---~-~iPVi~nG--gI~s~~d~~~~  220 (326)
                      + ++.+..+.++.+.++|+.+|++-+.....+.   .+  -.+. +.+.+|+..   - +.+++.++  +-...+.+.+.
T Consensus        94 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldea  173 (298)
T 3eoo_A           94 WGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAA  173 (298)
T ss_dssp             SSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHH
Confidence            5 5678888899999999999999877542111   11  1222 345555432   1 34444444  33322222222


Q ss_pred             H------HhcCCcEEEec
Q 020428          221 K------TAAGASSVMAA  232 (326)
Q Consensus       221 l------~~~Gad~VmiG  232 (326)
                      +      .+.|||++.+=
T Consensus       174 i~Ra~ay~~AGAD~if~~  191 (298)
T 3eoo_A          174 IERAIAYVEAGADMIFPE  191 (298)
T ss_dssp             HHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHhhHhcCCCEEEeC
Confidence            2      25899999883

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=94.62  E-value=0.088  Score=45.06  Aligned_cols=81  Identities=11%  Similarity=0.012  Sum_probs=57.9

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRD--PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      -|..+..+.++.+++.|+|++++--..  +.+..  ....+.++++++.++.|+..-+.|.++++..+.+...|+|+|.+
T Consensus        13 ~D~~~~~~~~~~~~~~G~~~i~~~~~d--g~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~v   90 (220)
T 2fli_A           13 ADYANFASELARIEETDAEYVHIDIMD--GQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTI   90 (220)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEEEEEEB--SSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeec--CCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEE
Confidence            345678888999999999998765322  21111  22378899999888899999899998864334444799999999


Q ss_pred             ccchh
Q 020428          232 ARGAL  236 (326)
Q Consensus       232 Gr~~l  236 (326)
                      .-...
T Consensus        91 h~~~~   95 (220)
T 2fli_A           91 HTEST   95 (220)
T ss_dssp             EGGGC
T ss_pred             ccCcc
Confidence            65443

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=94.60  E-value=0.15  Score=46.36  Aligned_cols=86  Identities=14%  Similarity=0.148  Sum_probs=59.4

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|-|.+...-.... .+.++.+.+.+  ++|||+ .|+..+.+.++..  .++.|||
T Consensus        34 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gad  113 (304)
T 3cpr_A           34 IDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGAD  113 (304)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCC
Confidence            4567788999999999999999999887755433222 34455555544  589874 5665555544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       114 avlv~~P~y~~~  125 (304)
T 3cpr_A          114 GLLVVTPYYSKP  125 (304)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877655

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...

Probab=94.58  E-value=0.18  Score=45.05  Aligned_cols=114  Identities=14%  Similarity=0.151  Sum_probs=74.0

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-cCCHHHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-PAKWGEIADIV  198 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-~~~~~~i~~i~  198 (326)
                      .|+..+++.+++++    + ..++.||.+|....-+.++....+..+...|...+++.-|...-.|.. ..|+..+..++
T Consensus       100 IgA~~~rn~~ll~~----~-a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~~~y~~~~~dl~~i~~lk  174 (267)
T 2nwr_A          100 IPAFLCRQTDLLLA----A-AKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMK  174 (267)
T ss_dssp             ECGGGTTCHHHHHH----H-HTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEECSSSCEECCTTHHHHHT
T ss_pred             ECcccccCHHHHHH----H-HcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHH
Confidence            35677788875444    4 356999999998865677778888889999986666554533222211 25777888888


Q ss_pred             HhcCCcEEEe---------------CCCCC--HHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          199 AALSIPVIAN---------------GDVFE--YDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       199 ~~~~iPVi~n---------------GgI~s--~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +. + ||+..               +|-..  ..-+.... ..|++|+||=+-+--+..+
T Consensus       175 ~~-~-pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aav-a~Ga~G~mIE~H~~pd~al  231 (267)
T 2nwr_A          175 QW-A-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAV-AVGCDGVFMETHPEPEKAL  231 (267)
T ss_dssp             TT-S-EEEEETTGGGCCTTC------CCGGGHHHHHHHHH-HHCCSEEEEEEESCGGGCS
T ss_pred             Hc-C-CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHH-HcCCCEEEEEecCCcccCC
Confidence            76 6 99873               33111  23344445 5899999998765434333

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=94.58  E-value=0.25  Score=42.53  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      .|+..=+|. .+.++..++++.+.+.|++.|.+.-++       +...+.++++++.++-.+++.|-+.+.+++..++ .
T Consensus        16 ~~~i~v~r~-~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~-~   86 (214)
T 1wbh_A           16 GPVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRT-------ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVT-E   86 (214)
T ss_dssp             CSEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCS-------TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHH-H
T ss_pred             CCEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHH-H
Confidence            466666664 566788999999999999999887442       2346788888888765677888899999999999 6


Q ss_pred             cCCcEEEec
Q 020428          224 AGASSVMAA  232 (326)
Q Consensus       224 ~Gad~VmiG  232 (326)
                      .|||+|..|
T Consensus        87 aGAd~v~~p   95 (214)
T 1wbh_A           87 AGAQFAISP   95 (214)
T ss_dssp             HTCSCEEES
T ss_pred             cCCCEEEcC
Confidence            999999988

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=94.54  E-value=0.92  Score=41.95  Aligned_cols=132  Identities=13%  Similarity=0.147  Sum_probs=86.6

Q ss_pred             eeecccCCCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc
Q 020428           67 VFRTCHQERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP  145 (326)
Q Consensus        67 ~~~~~~~~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p  145 (326)
                      +.+.+.+.+-+++--.|...  .    +..+.+ +++.+-|.              |.=+.|..+++.+    . ..+.|
T Consensus        83 L~~~~~~~Gi~~~st~fD~~--s----vd~l~~~~v~~~KI~--------------S~~~~N~pLL~~v----a-~~gKP  137 (350)
T 3g8r_A           83 LVAEMKANGFKAICTPFDEE--S----VDLIEAHGIEIIKIA--------------SCSFTDWPLLERI----A-RSDKP  137 (350)
T ss_dssp             HHHHHHHTTCEEEEEECSHH--H----HHHHHHTTCCEEEEC--------------SSSTTCHHHHHHH----H-TSCSC
T ss_pred             HHHHHHHcCCcEEeccCCHH--H----HHHHHHcCCCEEEEC--------------cccccCHHHHHHH----H-hhCCc
Confidence            45566667767776665332  2    223334 57777763              4445666665544    3 35999


Q ss_pred             EEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe----CCCCCHHHHHHH
Q 020428          146 VTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN----GDVFEYDDFQRI  220 (326)
Q Consensus       146 v~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n----GgI~s~~d~~~~  220 (326)
                      |.+|.... +.++....++.+.+.|.+.+.+|+-+.-..+....|+..|..+++.. ++||..+    |+..  .-+...
T Consensus       138 viLstGms-tl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~~--~~~~AA  214 (350)
T 3g8r_A          138 VVASTAGA-RREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHEDPDLM--EPIMLA  214 (350)
T ss_dssp             EEEECTTC-CHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCCSSCC--HHHHHH
T ss_pred             EEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCCCCcc--HHHHHH
Confidence            99999875 77888888888888898877777654322223456888999999998 7999877    4432  223345


Q ss_pred             HHhcCCc
Q 020428          221 KTAAGAS  227 (326)
Q Consensus       221 l~~~Gad  227 (326)
                      . ..||+
T Consensus       215 v-AlGA~  220 (350)
T 3g8r_A          215 V-AQGAT  220 (350)
T ss_dssp             H-HTTCC
T ss_pred             H-HcCCC
Confidence            5 47886

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}

Probab=94.54  E-value=0.53  Score=44.73  Aligned_cols=151  Identities=9%  Similarity=0.010  Sum_probs=93.9

Q ss_pred             CcEEEEE---CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEEE
Q 020428           76 NHVVFQM---GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVTC  148 (326)
Q Consensus        76 ~p~~vQl---~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~v  148 (326)
                      .|+++-+   +|+ +....+.++.+.+ |+.+|.|-=..+.++.+..-.|..|. ..+...+-|++++.+.   +.++.+
T Consensus       153 ~PviaD~dtGfG~-~~~v~~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv-~~~e~v~rI~Aar~A~~~~g~d~~I  230 (439)
T 3i4e_A          153 APIVADAEAGFGG-VLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLV-PTREAVAKLTAARLAADVMGTPTVL  230 (439)
T ss_dssp             CCEEEECTTTTSS-HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBC-CHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCeEEECCCCCCc-cHHHHHHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeec-CHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            6899988   344 4467777777666 99999997655444444333343444 4544444455555432   566655


Q ss_pred             EecCC--------------------------------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428          149 KIRLL--------------------------------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       149 K~r~g--------------------------------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                      --|..                                ...+++++-++.+.+ |+|.|-++..        ..+.+.+++
T Consensus       231 iARTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E~~--------~~~~eei~~  301 (439)
T 3i4e_A          231 VARTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCETG--------KPDLEYAKK  301 (439)
T ss_dssp             EEEECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEECCS--------SCCHHHHHH
T ss_pred             EEEcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEecCC--------CCCHHHHHH
Confidence            55542                                125678888888888 9999998753        346777877


Q ss_pred             HHHhcC----CcEE-EeCC-CCC------HHHHHH---HHHhcCCcEEEeccchhc
Q 020428          197 IVAALS----IPVI-ANGD-VFE------YDDFQR---IKTAAGASSVMAARGALW  237 (326)
Q Consensus       197 i~~~~~----iPVi-~nGg-I~s------~~d~~~---~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.++    .+++ +|.. .++      .+++..   -|...|+..|.++-+.+.
T Consensus       302 f~~~v~~~~P~~~l~~~~sPsfnw~~~~~~~~~~~f~~eL~~lGv~~v~~~la~~r  357 (439)
T 3i4e_A          302 FAEAIHKQFPGKLLSYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGFH  357 (439)
T ss_dssp             HHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHTHHHHHHHHTCCEEEETTHHHH
T ss_pred             HHHHhcccCCceEEeeCCCCCCcCcccCCHHHHHHHHHHHHHcCCeEEEeChHHHH
Confidence            777653    4444 3332 233      333322   234689999999977664

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=94.52  E-value=0.071  Score=46.64  Aligned_cols=85  Identities=12%  Similarity=0.113  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-------------CC----HHHHHHHHHhcCCcEEEeCCCCC---
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP-------------AK----WGEIADIVAALSIPVIANGDVFE---  213 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-------------~~----~~~i~~i~~~~~iPVi~nGgI~s---  213 (326)
                      ++.+++.+.++.+++. +|+|++.--..+....|+             .+    .+.++++++.+++||..-++++.   
T Consensus        16 ~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~   94 (248)
T 1geq_A           16 PDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYR   94 (248)
T ss_dssp             SCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhh
Confidence            4447899999999999 999998621111111111             13    56788899888999987665554   


Q ss_pred             ---HHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          214 ---YDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       214 ---~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                         .+.++.++ ..|||+|.++.-...++.
T Consensus        95 ~~~~~~~~~~~-~~Gad~v~~~~~~~~~~~  123 (248)
T 1geq_A           95 AGVRNFLAEAK-ASGVDGILVVDLPVFHAK  123 (248)
T ss_dssp             HCHHHHHHHHH-HHTCCEEEETTCCGGGHH
T ss_pred             cCHHHHHHHHH-HCCCCEEEECCCChhhHH
Confidence               46777777 699999999965444443

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=94.51  E-value=0.067  Score=49.76  Aligned_cols=68  Identities=13%  Similarity=0.140  Sum_probs=50.7

Q ss_pred             HHHHHHHHHc--CCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          160 VELARRIEKT--GVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       160 ~e~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      .+.++.+.+.  |++.+.+|...   . ....-|+.++++++.. ++||++ |++.|+++++.+. +.|+|+|.++-
T Consensus       120 ~~~~~~l~~~~~g~~~i~i~~~~---g-~~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~-~aGaD~I~v~~  190 (351)
T 2c6q_A          120 FEQLEQILEAIPQVKYICLDVAN---G-YSEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELI-LSGADIIKVGI  190 (351)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECSC---T-TBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHH-HTTCSEEEECS
T ss_pred             HHHHHHHHhccCCCCEEEEEecC---C-CcHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHH-HhCCCEEEECC
Confidence            3455555565  99999887421   1 1122478899999988 899884 7789999999999 69999998863

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A

Probab=94.51  E-value=0.55  Score=44.59  Aligned_cols=151  Identities=13%  Similarity=0.052  Sum_probs=92.6

Q ss_pred             CcEEEEE---CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc---ccCcEEE
Q 020428           76 NHVVFQM---GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN---LDVPVTC  148 (326)
Q Consensus        76 ~p~~vQl---~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~---~~~pv~v  148 (326)
                      .|+++-+   +|+.+ ...+.++.+.+ |+.+|.|-=..+.++.+..-.|-.|. ..+...+-|++++.+   .+.++.+
T Consensus       149 ~PIiaD~DtGfG~~~-nv~~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lv-p~~e~v~rI~AAr~A~~~~g~d~vI  226 (429)
T 1f8m_A          149 APIVADGEAGFGGAL-NVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLI-PTQQHIRTLTSARLAADVADVPTVV  226 (429)
T ss_dssp             CCEEEECTTTTSSHH-HHHHHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEEC-CHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CCEEEECCCCCCCcH-HHHHHHHHHHHcCCEEEEEecCCCccccccCCCCCeee-CHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            6999988   34444 67777777766 99999987554444433333344444 444444444555444   3566655


Q ss_pred             EecCC--------------------------------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHH
Q 020428          149 KIRLL--------------------------------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIAD  196 (326)
Q Consensus       149 K~r~g--------------------------------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~  196 (326)
                      --|..                                ...+++++-++.+.+ |+|.|-+++.        ..+.+.+++
T Consensus       227 iARTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e~~--------~~~~eei~~  297 (429)
T 1f8m_A          227 IARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWMETG--------TPDLEAARQ  297 (429)
T ss_dssp             EEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEECCS--------SCCHHHHHH
T ss_pred             EEEechhhhccccccccccccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeCCC--------CCCHHHHHH
Confidence            55542                                124678888888888 9999998743        346788888


Q ss_pred             HHHhcC--Cc--EE-EeCC-CCC------HHHHH---HHHHhcCCcEEEeccchhc
Q 020428          197 IVAALS--IP--VI-ANGD-VFE------YDDFQ---RIKTAAGASSVMAARGALW  237 (326)
Q Consensus       197 i~~~~~--iP--Vi-~nGg-I~s------~~d~~---~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.++  .|  ++ +|+. -++      .+++.   +-+.+.|...+.++-+.+.
T Consensus       298 f~~~v~~~~P~~~La~n~sPsf~w~~~~~~~~~~~f~~eL~~lG~~~v~~~l~~~r  353 (429)
T 1f8m_A          298 FSEAVKAEYPDQMLAYNCSPSFNWKKHLDDATIAKFQKELAAMGFKFQFITLAGFH  353 (429)
T ss_dssp             HHHHHHTTCTTCEEEEECCTTSCHHHHCCHHHHHHHHHHHHHHTEEEEEETTHHHH
T ss_pred             HHHHhcccCCCceeecCCCCCCCcccccchhhHhHHHHHHHHcCCeEEEECcHHHH
Confidence            888764  25  44 4442 233      22332   2334678888888866553

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=94.50  E-value=0.53  Score=40.82  Aligned_cols=86  Identities=20%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc--ccCcEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN--LDVPVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~--~~~pv~vK~r~g  153 (326)
                      .++++-+=-.+.++..+.++.+...++.+.++.+.  -    -.+|      |    ++++++++.  ..+.+.+|+  .
T Consensus        13 ~~lilAlD~~~~~~a~~~v~~~~~~v~~~Kvg~~l--f----~~~G------~----~~v~~l~~~~g~~v~lD~Kl--~   74 (228)
T 3m47_A           13 NRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPL--V----LSEG------M----DIIAEFRKRFGCRIIADFKV--A   74 (228)
T ss_dssp             GGEEEECCCCSHHHHHHHHHTTTTTCSEEEEEHHH--H----HHHC------T----HHHHHHHHHHCCEEEEEEEE--C
T ss_pred             CCeEEEeCCCCHHHHHHHHHHcCCcccEEEEcHHH--H----HhcC------H----HHHHHHHhcCCCeEEEEEee--c
Confidence            46777765556666666665554457888886421  0    0112      2    345556553  345556666  3


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      +-+.+....++.+.++|+|.+++|+-
T Consensus        75 DipnTv~~~~~~~~~~gad~vtvh~~  100 (228)
T 3m47_A           75 DIPETNEKICRATFKAGADAIIVHGF  100 (228)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred             ccHhHHHHHHHHHHhCCCCEEEEecc
Confidence            44555666888889999999999975

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=94.40  E-value=0.13  Score=47.12  Aligned_cols=86  Identities=17%  Similarity=0.170  Sum_probs=58.0

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEe-CCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIAN-GDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-.... .+.++.+.+.+  ++|||+. |+..+.+.++..  .++.|||
T Consensus        41 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad  120 (314)
T 3qze_A           41 LDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD  120 (314)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence            3567788899999999999999999887754332221 23445555544  6898855 444444443322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       121 avlv~~P~y~~~  132 (314)
T 3qze_A          121 ACLLVTPYYNKP  132 (314)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEEcCCCCCCC
Confidence            999998877655

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=94.34  E-value=0.17  Score=44.66  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-------------CC----HH
Q 020428          131 IHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP-------------AK----WG  192 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-------------~~----~~  192 (326)
                      +.+.+..+++.-...+..=+-.+ ++.+++.+.++.++++|+|.|.+-.-..+....+|             .+    ++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~   84 (262)
T 1rd5_A            5 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLE   84 (262)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHH
Confidence            34445555443222333333233 45688999999999999999998432111111111             11    45


Q ss_pred             HHHHHHHhcCCcEEEeCCCCCHH---HHHHHHHhcCCcEEEecc
Q 020428          193 EIADIVAALSIPVIANGDVFEYD---DFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       193 ~i~~i~~~~~iPVi~nGgI~s~~---d~~~~l~~~Gad~VmiGr  233 (326)
                      .++++++.+++||+.++.. ++.   .++.+. ..|+|+|.+.-
T Consensus        85 ~i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a~-~aGadgv~v~d  126 (262)
T 1rd5_A           85 MLREVTPELSCPVVLLSYY-KPIMFRSLAKMK-EAGVHGLIVPD  126 (262)
T ss_dssp             HHHHHGGGCSSCEEEECCS-HHHHSCCTHHHH-HTTCCEEECTT
T ss_pred             HHHHHHhcCCCCEEEEecC-cHHHHHHHHHHH-HcCCCEEEEcC
Confidence            6788888889999987522 221   123355 69999999863

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=94.34  E-value=0.14  Score=46.50  Aligned_cols=86  Identities=20%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++|||+ .|+..+.+.++..  .++.|||
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad  109 (301)
T 1xky_A           30 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD  109 (301)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence            356678899999999999999999888775433222 123455555544  689874 5655555544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       110 avlv~~P~y~~~  121 (301)
T 1xky_A          110 AVMLVAPYYNKP  121 (301)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEEcCCCCCCC
Confidence            999998877655

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=94.32  E-value=0.13  Score=46.44  Aligned_cols=86  Identities=14%  Similarity=0.134  Sum_probs=57.8

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHH---HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRI---KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~---l~~~Gad  227 (326)
                      .|.+....+++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++|||+.-|-.+.+++.++   .++.|||
T Consensus        20 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad   99 (292)
T 3daq_A           20 VNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD   99 (292)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCC
Confidence            356678889999999999999999988774432221 123455555554  6899865444444444443   2357999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       100 avlv~~P~y~~~  111 (292)
T 3daq_A          100 AIMLITPYYNKT  111 (292)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999997766554

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=94.32  E-value=0.14  Score=46.31  Aligned_cols=86  Identities=15%  Similarity=0.142  Sum_probs=57.7

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEe-CCCCCHHHHHH--HHHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIAN-GDVFEYDDFQR--IKTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~~--~l~~~Gad  227 (326)
                      .|.+....+++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++|||+. |+..+.+.++.  ..++.|||
T Consensus        25 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad  104 (297)
T 3flu_A           25 IHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD  104 (297)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence            356678889999999999999999988765432222 123455555544  6898854 44444444332  23468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       105 avlv~~P~y~~~  116 (297)
T 3flu_A          105 YTLSVVPYYNKP  116 (297)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877655

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=94.31  E-value=0.36  Score=41.88  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428          131 IHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD  210 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg  210 (326)
                      ..++++.+.+   .|+..=+|. .+.++..++++.+.+.|++.|.+.-++       +...+.++++++.++--+++.|-
T Consensus        16 ~~~~~~~l~~---~~ii~V~r~-~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~~~igagt   84 (225)
T 1mxs_A           16 AARIDAICEK---ARILPVITI-AREEDILPLADALAAGGIRTLEVTLRS-------QHGLKAIQVLREQRPELCVGAGT   84 (225)
T ss_dssp             HHHHHHHHHH---HSEEEEECC-SCGGGHHHHHHHHHHTTCCEEEEESSS-------THHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHHHHHHHHH---CCEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHhCcccEEeeCe
Confidence            4445555554   356655664 466789999999999999999886432       23457788888877444677788


Q ss_pred             CCCHHHHHHHHHhcCCcEEEec
Q 020428          211 VFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.+.+++..++ ..|||+|..|
T Consensus        85 vl~~d~~~~A~-~aGAd~v~~p  105 (225)
T 1mxs_A           85 VLDRSMFAAVE-AAGAQFVVTP  105 (225)
T ss_dssp             CCSHHHHHHHH-HHTCSSEECS
T ss_pred             EeeHHHHHHHH-HCCCCEEEeC
Confidence            99999999999 6999999988

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=94.23  E-value=0.16  Score=45.93  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=58.8

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|-|.+...-... ..+.++.+.+.+  ++|||+ .|+..+.+.++..  .++.|||
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gad   98 (291)
T 3a5f_A           19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVD   98 (291)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCC
Confidence            456678889999999999999999988775433222 234455555544  589874 4555554443322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus        99 avlv~~P~y~~~  110 (291)
T 3a5f_A           99 GLLVITPYYNKT  110 (291)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEEcCCCCCCC
Confidence            999999888655

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=94.21  E-value=0.7  Score=41.77  Aligned_cols=147  Identities=17%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-  154 (326)
                      |++ =+...|+-.    |+++.+ |++.|=+.-.+ ... ..-|+-....-..+.+...++.|...++.||++-+-.|+ 
T Consensus        18 ~i~-~~~a~D~~s----A~~~~~aG~~ai~vs~~~-~a~-~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg   90 (295)
T 1xg4_A           18 PLQ-IVGTINANH----ALLAQRAGYQAIYLSGGG-VAA-GSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG   90 (295)
T ss_dssp             SEE-EEECSSHHH----HHHHHHTTCSCEEECHHH-HHH-TTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSS
T ss_pred             cEE-EecCcCHHH----HHHHHHcCCCEEEECchH-hhh-hhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccC
Confidence            443 355566433    444444 88888764210 000 012232333445677888888888888999999998875 


Q ss_pred             -ChHHHHHHHHHHHHcCCcEEEEeecccCCC---CCC---cCCHHHHHHHHH---hc-CCcEEEeCCCCC---------H
Q 020428          155 -SSQDTVELARRIEKTGVSALAVHGRKVADR---PRD---PAKWGEIADIVA---AL-SIPVIANGDVFE---------Y  214 (326)
Q Consensus       155 -~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~---~~~---~~~~~~i~~i~~---~~-~iPVi~nGgI~s---------~  214 (326)
                       ++.+..+.++.+.++|+++|++-+......   ..+   .+.-+.+.+|+.   .- ..++..+|-...         .
T Consensus        91 ~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai  170 (295)
T 1xg4_A           91 SSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAI  170 (295)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHH
Confidence             578899999999999999999987653211   111   111234444443   32 344444443332         2


Q ss_pred             HHHHHHHHhcCCcEEEe
Q 020428          215 DDFQRIKTAAGASSVMA  231 (326)
Q Consensus       215 ~d~~~~l~~~Gad~Vmi  231 (326)
                      +++..+. +.|||++.+
T Consensus       171 ~ra~ay~-eAGAd~i~~  186 (295)
T 1xg4_A          171 ERAQAYV-EAGAEMLFP  186 (295)
T ss_dssp             HHHHHHH-HTTCSEEEE
T ss_pred             HHHHHHH-HcCCCEEEE
Confidence            2333333 689999988

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=94.20  E-value=0.15  Score=45.60  Aligned_cols=71  Identities=25%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecc-----cCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          158 DTVELARRIEKTGVSALAVHGRK-----VADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~-----~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      ...+.|+.++++|+.+|.+--|.     ..++-....+.+.|++|++.+++||++==-|....+++.+. ..|+|.|
T Consensus        19 ~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ~~EAqile-a~GaD~I   94 (291)
T 3o07_A           19 VTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIE-ALEVDYI   94 (291)
T ss_dssp             SSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHH-HTTCSEE
T ss_pred             CCHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH-HcCCCEE
Confidence            35678999999999999876332     22333345688999999999999999988888888887666 6999988

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=94.16  E-value=0.99  Score=38.98  Aligned_cols=114  Identities=11%  Similarity=0.073  Sum_probs=75.2

Q ss_pred             CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh---hcccCcEEEEecC--C---CChHH---HHHHHHHHHH
Q 020428          100 DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK---RNLDVPVTCKIRL--L---KSSQD---TVELARRIEK  168 (326)
Q Consensus       100 ~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~---~~~~~pv~vK~r~--g---~~~~~---~~e~a~~l~~  168 (326)
                      |+|-|||+.+=..         +.+--....    ++.++   +.+++||.|=+|.  |   ++..+   -.+-++.+.+
T Consensus        21 GAdRIELc~~L~~---------GGlTPS~g~----i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~   87 (224)
T 2bdq_A           21 IISRVELCDNLAV---------GGTTPSYGV----IKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVE   87 (224)
T ss_dssp             TCCEEEEEBCGGG---------TCBCCCHHH----HHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCccc---------CCcCCCHHH----HHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence            8999999743110         011112223    34444   6678999998888  3   23333   4555678889


Q ss_pred             cCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCC---C--CCHHHHHHHHHhcCCcEEE
Q 020428          169 TGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGD---V--FEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       169 ~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGg---I--~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +|+|+|++-.-+.+    +..|.+.++++.+.. ++|+..-=-   +  .++..+.+.+...|++.|.
T Consensus        88 ~GadGvV~G~Lt~d----g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rIL  151 (224)
T 2bdq_A           88 LESDALVLGILTSN----NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRIL  151 (224)
T ss_dssp             TTCSEEEECCBCTT----SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEE
T ss_pred             cCCCEEEEeeECCC----CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEE
Confidence            99999988666554    567899998887654 678775432   3  6677766666678999886

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=94.13  E-value=2.2  Score=37.08  Aligned_cols=138  Identities=12%  Similarity=0.105  Sum_probs=86.3

Q ss_pred             cEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC-
Q 020428           77 HVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL-  152 (326)
Q Consensus        77 p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~-  152 (326)
                      .+++-|.+ .+.+++...++.+.. ++|.||+=..+=..            .+++.+.+.+..+++.. ++|+.+-+|. 
T Consensus         5 ~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~------------~~~~~v~~~~~~lr~~~~~~PiI~T~R~~   72 (238)
T 1sfl_A            5 EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFEN------------VTVDQVAEMITKLKVMQDSFKLLVTYRTK   72 (238)
T ss_dssp             EEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTT------------CCHHHHHHHHHHHC---CCSEEEEECCBG
T ss_pred             eEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEeccccc------------CCHHHHHHHHHHHHHhccCCCEEEEeecc
Confidence            58889999 998888777776655 89999996543111            14678889999999887 7899998887 


Q ss_pred             ---C---CChHHHHHHHHHHHHc-CCcEEEEeecccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCC----CCCHHHHH
Q 020428          153 ---L---KSSQDTVELARRIEKT-GVSALAVHGRKVADRPRDPAKWGEIADIVA---ALSIPVIANGD----VFEYDDFQ  218 (326)
Q Consensus       153 ---g---~~~~~~~e~a~~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGg----I~s~~d~~  218 (326)
                         |   .+.+...++.+.+.+. ++|+|.|--...       .+-+.+.++.+   ..+..||++=-    --+.+++.
T Consensus        73 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~-------~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~  145 (238)
T 1sfl_A           73 LQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQAD-------IDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQ  145 (238)
T ss_dssp             GGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTT-------SCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCC-------CChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHH
Confidence               2   2456677888887776 699999864320       01233333322   34677887632    23345555


Q ss_pred             HHH---HhcCCcEEEecc
Q 020428          219 RIK---TAAGASSVMAAR  233 (326)
Q Consensus       219 ~~l---~~~Gad~VmiGr  233 (326)
                      ..+   ...|||.|=++.
T Consensus       146 ~~~~~~~~~gaDivKia~  163 (238)
T 1sfl_A          146 FIFFKMQKFNPEYVKLAV  163 (238)
T ss_dssp             HHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHHHcCCCEEEEEe
Confidence            444   257888776654

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*

Probab=94.09  E-value=0.53  Score=44.68  Aligned_cols=152  Identities=11%  Similarity=0.037  Sum_probs=88.7

Q ss_pred             CCcEEEEE---CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---cCcEE
Q 020428           75 RNHVVFQM---GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPVT  147 (326)
Q Consensus        75 ~~p~~vQl---~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---~~pv~  147 (326)
                      ..|+++-+   +|+ +....+.++.+.+ |+.+|.|-=....++.+..-.|..|....+.+.. |++++.+.   +.++.
T Consensus       145 ~lPIiaD~DtGfG~-~~nv~rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~r-I~AAr~A~~~~g~d~v  222 (433)
T 3eol_A          145 FAPIVADAEAGFGD-PLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRN-LNAARLAADVMGTPTL  222 (433)
T ss_dssp             CCCEEEECC---CC-HHHHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHH-HHHHHHHHHHHTCCCE
T ss_pred             CCCeEEECCCCCCC-cHHHHHHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHH-HHHHHHHHHhcCCCEE
Confidence            46999988   344 4467777777766 9999999755544444443334445444444444 44444332   45555


Q ss_pred             EEecCC----------------------------------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHH
Q 020428          148 CKIRLL----------------------------------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGE  193 (326)
Q Consensus       148 vK~r~g----------------------------------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~  193 (326)
                      +--|..                                  ...+++++-++.+.+ |+|.|-++..        ..+.+.
T Consensus       223 IiARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~e~~--------~~~~ee  293 (433)
T 3eol_A          223 IVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWMETS--------KPDLAQ  293 (433)
T ss_dssp             EEEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEECCS--------SCCHHH
T ss_pred             EEEEcCCccccccccCcccccccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEEeCC--------CCCHHH
Confidence            444432                                  235678888888888 9999999754        236777


Q ss_pred             HHHHHHhcC----CcEEEeCC--CCC------HHHHHH---HHHhcCCcEEEeccchhc
Q 020428          194 IADIVAALS----IPVIANGD--VFE------YDDFQR---IKTAAGASSVMAARGALW  237 (326)
Q Consensus       194 i~~i~~~~~----iPVi~nGg--I~s------~~d~~~---~l~~~Gad~VmiGr~~l~  237 (326)
                      ++++.+.++    .++++.|.  -++      .+++..   -|.+.|+..|.++-+++.
T Consensus       294 i~~f~~~v~~~~P~~~L~~~~sPsfnw~~~~~~~~~~~f~~eLa~lGv~~v~~~~a~~r  352 (433)
T 3eol_A          294 ARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFH  352 (433)
T ss_dssp             HHHHHHHHHHHSTTCCEEEECCSSSCHHHHSCHHHHHHHHHHHHHHTEEEEEETTHHHH
T ss_pred             HHHHHHHhcccCCCcccccCCCCCCcccccCChhHHhHHHHHHHHcCCeEEEeCcHHHH
Confidence            877777653    43443333  232      233322   244689999999977654

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=94.04  E-value=0.15  Score=46.05  Aligned_cols=86  Identities=13%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHH---HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRI---KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~---l~~~Gad  227 (326)
                      .|.+....+++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++|||+.=|=.+.+++.++   .++.|||
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad   98 (291)
T 3tak_A           19 VDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD   98 (291)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence            356778889999999999999999887764432221 123455555544  6898855343344444333   3468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus        99 avlv~~P~y~~~  110 (291)
T 3tak_A           99 AALLVTPYYNKP  110 (291)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEEcCCCCCCC
Confidence            999998877655

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=94.02  E-value=0.15  Score=46.16  Aligned_cols=85  Identities=14%  Similarity=0.127  Sum_probs=57.8

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEE-EeCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVI-ANGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi-~nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|-|.+...-... ..+.++.+.+.+  ++||| +.|+..+.+.++..  .++.|||
T Consensus        21 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad  100 (294)
T 3b4u_A           21 VDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGAR  100 (294)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCC
Confidence            356678899999999999999999988775433222 234455555555  58987 55665555544322  2468999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      ++|+-...+..
T Consensus       101 avlv~~P~y~~  111 (294)
T 3b4u_A          101 NILLAPPSYFK  111 (294)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEEcCCcCCC
Confidence            99999776544

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=94.00  E-value=0.16  Score=46.14  Aligned_cols=86  Identities=19%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEE-EeCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVI-ANGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi-~nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+....+++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++||| +.|+..+.+.++..  .++.|||
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad  109 (306)
T 1o5k_A           30 LDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN  109 (306)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCC
Confidence            466778899999999999999999988775433222 224455555544  58987 45665555544322  2457999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       110 avlv~~P~y~~~  121 (306)
T 1o5k_A          110 GVLVVTPYYNKP  121 (306)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998887665

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=94.00  E-value=0.16  Score=45.89  Aligned_cols=86  Identities=16%  Similarity=0.051  Sum_probs=58.5

Q ss_pred             CChHHHHHHHHHHHH-cCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCC
Q 020428          154 KSSQDTVELARRIEK-TGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGA  226 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~-~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Ga  226 (326)
                      .|.+...++++.+.+ .|+++|.+.|-|.+...-... ..+.++.+.+.+  ++|||+ .|+..+.+.++..  .+..||
T Consensus        21 iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga  100 (293)
T 1f6k_A           21 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY  100 (293)
T ss_dssp             BCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence            356678899999999 999999999988775433222 234455555544  689874 4555555444322  245799


Q ss_pred             cEEEeccchhcCc
Q 020428          227 SSVMAARGALWNA  239 (326)
Q Consensus       227 d~VmiGr~~l~~P  239 (326)
                      |++|+-...+..|
T Consensus       101 davlv~~P~y~~~  113 (293)
T 1f6k_A          101 DCLSAVTPFYYKF  113 (293)
T ss_dssp             SEEEEECCCSSCC
T ss_pred             CEEEECCCCCCCC
Confidence            9999998877655

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=93.99  E-value=0.15  Score=46.30  Aligned_cols=86  Identities=16%  Similarity=0.078  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-... ..++++.+.+.+  ++|||+ .|+..+.+.++..  .++.|||
T Consensus        29 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad  108 (303)
T 2wkj_A           29 LDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD  108 (303)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCC
Confidence            356678899999999999999999888765433222 233455555544  689884 5655555544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       109 avlv~~P~y~~~  120 (303)
T 2wkj_A          109 AVSAVTPFYYPF  120 (303)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEecCCCCCCC
Confidence            999998877655

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=93.99  E-value=0.19  Score=45.87  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             CCHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      .+++...+.|+. +++|+|.||||+-+-.|....++-.-......+.+..+++++++.+++|||+-..-       .+++
T Consensus        46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~~-------~~Va  118 (314)
T 3tr9_A           46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTSR-------PRVM  118 (314)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECSC-------HHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCCC-------HHHH
Confidence            356666655554 45599999998643333100000000112223446677888888789999998742       2455


Q ss_pred             HHHHHcCCcEEE
Q 020428          164 RRIEKTGVSALA  175 (326)
Q Consensus       164 ~~l~~~G~d~i~  175 (326)
                      +...++|++.|.
T Consensus       119 ~aAl~aGa~iIN  130 (314)
T 3tr9_A          119 REAVNTGADMIN  130 (314)
T ss_dssp             HHHHHHTCCEEE
T ss_pred             HHHHHcCCCEEE
Confidence            556666888653

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=93.97  E-value=0.16  Score=46.24  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEe-CCCCCHHHHHHHH---HhcCC
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIAN-GDVFEYDDFQRIK---TAAGA  226 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~~~l---~~~Ga  226 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-... ..++++.+.+.+  ++|||+. |+..+ +++.++.   ++.||
T Consensus        33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t-~~ai~la~~a~~~Ga  111 (304)
T 3l21_A           33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDT-AHSIRLAKACAAEGA  111 (304)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCH-HHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCH-HHHHHHHHHHHHcCC
Confidence            456778899999999999999999988764432221 233455555554  6899865 44544 4443332   45799


Q ss_pred             cEEEeccchhcCc
Q 020428          227 SSVMAARGALWNA  239 (326)
Q Consensus       227 d~VmiGr~~l~~P  239 (326)
                      |+|++-...+..|
T Consensus       112 davlv~~P~y~~~  124 (304)
T 3l21_A          112 HGLLVVTPYYSKP  124 (304)
T ss_dssp             SEEEEECCCSSCC
T ss_pred             CEEEECCCCCCCC
Confidence            9999998877665

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=93.93  E-value=0.16  Score=45.85  Aligned_cols=86  Identities=16%  Similarity=0.057  Sum_probs=58.9

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|-|.+...-... ..+.++.+.+.+  ++|||+ .|+..+.+.++..  .+..|||
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad   97 (294)
T 2ehh_A           18 VDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGAD   97 (294)
T ss_dssp             ECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            466778899999999999999999988775433221 234455555544  589874 4655555544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus        98 avlv~~P~y~~~  109 (294)
T 2ehh_A           98 GALVVVPYYNKP  109 (294)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877655

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=93.91  E-value=0.15  Score=45.99  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=58.4

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHHH--HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRIK--TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~l--~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|-|.+...-... ..+.++.+.+.+  ++|||+ .|+..+.+.++...  +..|||
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad   98 (292)
T 2ojp_A           19 VCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV   98 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCC
Confidence            356678899999999999999999988775433222 234455555544  589874 45555554443322  357999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus        99 avlv~~P~y~~~  110 (292)
T 2ojp_A           99 GCLTVTPYYNRP  110 (292)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877655

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=93.88  E-value=0.17  Score=45.64  Aligned_cols=86  Identities=15%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEE-EeCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVI-ANGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi-~nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++||| +.|+..+.+.++..  .+..|||
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad   97 (289)
T 2yxg_A           18 VDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGAD   97 (289)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence            466778899999999999999999887765433222 234455555544  58987 45665555544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus        98 avlv~~P~y~~~  109 (289)
T 2yxg_A           98 AVLSITPYYNKP  109 (289)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877655

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=93.84  E-value=1.5  Score=39.35  Aligned_cols=165  Identities=9%  Similarity=0.059  Sum_probs=95.0

Q ss_pred             EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--------
Q 020428           81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--------  152 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--------  152 (326)
                      +.+..+.+.+.++.+   .|++.|-+-.+. +....+...+.....+.+.+.++++.+++. +++|..-+..        
T Consensus        76 ~~l~~n~~~i~~a~~---~G~~~V~i~~~~-S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~  150 (295)
T 1ydn_A           76 SVLVPNMKGYEAAAA---AHADEIAVFISA-SEGFSKANINCTIAESIERLSPVIGAAIND-GLAIRGYVSCVVECPYDG  150 (295)
T ss_dssp             EEECSSHHHHHHHHH---TTCSEEEEEEES-CHHHHHHHTSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSEETTTE
T ss_pred             EEEeCCHHHHHHHHH---CCCCEEEEEEec-CHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEEEecCCcCC
Confidence            333455555444332   488887774321 111111112223334455666667776654 6666533332        


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcC-CcEEEeC----CCCCHHHHHHHHHhcCCc
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALS-IPVIANG----DVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-iPVi~nG----gI~s~~d~~~~l~~~Gad  227 (326)
                      ..+++...++++.+.+.|+|.|.+..-  .+...+....+.++.+++.++ +|+-.-|    |+. ...+...+ +.|++
T Consensus       151 ~~~~~~~~~~~~~~~~~G~d~i~l~Dt--~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla-~an~l~Ai-~aG~~  226 (295)
T 1ydn_A          151 PVTPQAVASVTEQLFSLGCHEVSLGDT--IGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRA-LDNIRVSL-EKGLR  226 (295)
T ss_dssp             ECCHHHHHHHHHHHHHHTCSEEEEEET--TSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCH-HHHHHHHH-HHTCC
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEecCC--CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchH-HHHHHHHH-HhCCC
Confidence            135788999999999999999998742  111222234677888888886 8887554    333 34456666 58999


Q ss_pred             EEEeccchhc-CcccccccCCCCHHHHH
Q 020428          228 SVMAARGALW-NASIFSSQGKLHWEDVK  254 (326)
Q Consensus       228 ~VmiGr~~l~-~P~lf~~~~~~~~~~~~  254 (326)
                      .|-+.=+=++ .|......|..+.+++.
T Consensus       227 ~vd~sv~GlG~cp~a~g~~GN~~~e~lv  254 (295)
T 1ydn_A          227 VFDASVGGLGGCPFAPGAKGNVDTVAVV  254 (295)
T ss_dssp             EEEEBTTCCSCBTTBTTSCCBCBHHHHH
T ss_pred             EEEeccccCCCCCCCCCCcCChhHHHHH
Confidence            8887643333 67655445555555444

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=93.80  E-value=1.5  Score=39.58  Aligned_cols=162  Identities=11%  Similarity=0.064  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C------CCh
Q 020428           85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L------KSS  156 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g------~~~  156 (326)
                      .+.+++..+.+   .|++.|.+-.++- ....+...+.....+.+.+.++++.+++. ++.|..-+..  +      .++
T Consensus        84 ~~~~~i~~a~~---aG~~~v~i~~~~s-~~~~~~~~~~s~ee~l~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~  158 (302)
T 2ftp_A           84 PNLKGFEAALE---SGVKEVAVFAAAS-EAFSQRNINCSIKDSLERFVPVLEAARQH-QVRVRGYISCVLGCPYDGDVDP  158 (302)
T ss_dssp             CSHHHHHHHHH---TTCCEEEEEEESC-HHHHHHHHSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCCH
T ss_pred             CCHHHHHHHHh---CCcCEEEEEEecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCCH
Confidence            45555554433   4888888743321 11112223333444556667777777664 5555433332  2      356


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC--CCCC-HHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG--DVFE-YDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG--gI~s-~~d~~~~l~~~Gad~VmiG  232 (326)
                      +...++++.+.+.|+|.|.+-.-.  +...+....+.++.+++.+ ++|+-.-|  +-.. ...+...+ +.|++.|-..
T Consensus       159 ~~~~~~~~~~~~~G~d~i~l~DT~--G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv-~aGa~~vd~t  235 (302)
T 2ftp_A          159 RQVAWVARELQQMGCYEVSLGDTI--GVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASL-LEGIAVFDSS  235 (302)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEESS--SCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHH-HTTCCEEEEB
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCC--CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHH-HhCCCEEEec
Confidence            789999999999999999886322  2222223467788888888 58987655  3333 34456667 5899999887


Q ss_pred             cchhcC-cccccccCCCCHHHHH
Q 020428          233 RGALWN-ASIFSSQGKLHWEDVK  254 (326)
Q Consensus       233 r~~l~~-P~lf~~~~~~~~~~~~  254 (326)
                      =.=++. |.-....|..+.++++
T Consensus       236 v~GlG~cp~a~gr~GN~~~E~lv  258 (302)
T 2ftp_A          236 VAGLGGCPYAKGATGNVASEDVL  258 (302)
T ss_dssp             GGGCCBCGGGTTCBCBCBHHHHH
T ss_pred             ccccCCCCCCCCCCCChhHHHHH
Confidence            665654 7655555666655554

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.76  E-value=0.3  Score=44.29  Aligned_cols=97  Identities=22%  Similarity=0.214  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHh---hcccCcEEEEecCCCChHHHHH
Q 020428           86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLK---RNLDVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~---~~~~~pv~vK~r~g~~~~~~~e  161 (326)
                      +++...+.|+. +.+|+|.||||+|.+            .....+.+.+++..+.   +.+++||++-..-       .+
T Consensus        35 ~~~~a~~~A~~~v~~GAdiIDIg~g~~------------~v~~~eem~rvv~~i~~~~~~~~vpisIDT~~-------~~   95 (300)
T 3k13_A           35 KYDEALSIARQQVEDGALVIDVNMDDG------------LLDARTEMTTFLNLIMSEPEIARVPVMIDSSK-------WE   95 (300)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCCT------------TSCHHHHHHHHHHHHHTCHHHHTSCEEEECSC-------HH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCC------------CCCHHHHHHHHHHHHHHhhhcCCCeEEEeCCC-------HH
Confidence            34555555554 445999999998633            2233456666666665   4568999997741       23


Q ss_pred             HHHHHHH--cCCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          162 LARRIEK--TGVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       162 ~a~~l~~--~G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      +++...+  +|++.|. |++-.      +...++.+..+.+..+.|||+
T Consensus        96 V~eaaL~~~~Ga~iINdIs~~~------~d~~~~~~~~l~a~~ga~vV~  138 (300)
T 3k13_A           96 VIEAGLKCLQGKSIVNSISLKE------GEEVFLEHARIIKQYGAATVV  138 (300)
T ss_dssp             HHHHHHHHCSSCCEEEEECSTT------CHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHhcCCCCEEEeCCccc------CChhHHHHHHHHHHhCCeEEE
Confidence            3444444  5877553 33221      122344455555566777764

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=93.73  E-value=0.15  Score=46.20  Aligned_cols=86  Identities=17%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEE-EeCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVI-ANGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi-~nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++||| +.|+..+.+.++..  .++.|||
T Consensus        18 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad   97 (297)
T 2rfg_A           18 VDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGAD   97 (297)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCC
Confidence            456678899999999999999999988775433222 234455555544  58987 45665555544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus        98 avlv~~P~y~~~  109 (297)
T 2rfg_A           98 AVLCVAGYYNRP  109 (297)
T ss_dssp             EEEECCCTTTCC
T ss_pred             EEEEcCCCCCCC
Confidence            999998877655

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=93.70  E-value=0.15  Score=46.58  Aligned_cols=86  Identities=14%  Similarity=0.136  Sum_probs=57.6

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEe-CCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIAN-GDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-... ..++++.+.+.+  ++|||+. |+..+.+.++..  .+..|||
T Consensus        40 iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad  119 (315)
T 3si9_A           40 IDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD  119 (315)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence            356778889999999999999999887764432221 123455555544  6898855 444444443322  3468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       120 avlv~~P~y~~~  131 (315)
T 3si9_A          120 AVLVVTPYYNRP  131 (315)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877655

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=93.66  E-value=0.18  Score=45.78  Aligned_cols=86  Identities=15%  Similarity=0.139  Sum_probs=58.1

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc---CCcEEEe-CCCCCHHHHHHH--HHhcCC
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL---SIPVIAN-GDVFEYDDFQRI--KTAAGA  226 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~---~iPVi~n-GgI~s~~d~~~~--l~~~Ga  226 (326)
                      .|.+....+++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+   ++|||+. |+..+.+.++..  .+..||
T Consensus        25 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga  104 (301)
T 3m5v_A           25 VDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA  104 (301)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence            466778899999999999999999887764432221 223455555544   5899865 444444443322  246899


Q ss_pred             cEEEeccchhcCc
Q 020428          227 SSVMAARGALWNA  239 (326)
Q Consensus       227 d~VmiGr~~l~~P  239 (326)
                      |++|+-...+..|
T Consensus       105 davlv~~P~y~~~  117 (301)
T 3m5v_A          105 DGILSVAPYYNKP  117 (301)
T ss_dssp             SEEEEECCCSSCC
T ss_pred             CEEEEcCCCCCCC
Confidence            9999998877665

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=93.66  E-value=0.16  Score=46.36  Aligned_cols=86  Identities=17%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEe-CCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIAN-GDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+....+++.+.+.|+++|.+-|-|.+...-... ..++++.+.+.+  ++|||+. |+..+.+.++..  .++.|||
T Consensus        42 iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad  121 (315)
T 3na8_A           42 LDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE  121 (315)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            356778899999999999999999988774432221 233455555544  6898855 445444443322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+-...+..|
T Consensus       122 avlv~~P~y~~~  133 (315)
T 3na8_A          122 AVMVLPISYWKL  133 (315)
T ss_dssp             EEEECCCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877655

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=93.66  E-value=0.16  Score=46.77  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEE-EeCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVI-ANGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi-~nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+....+++.+.+.|+++|.+-|-|.+...-... ..++++.+.+.+  ++||| +.|+..+.+.++..  .+..|||
T Consensus        52 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad  131 (332)
T 2r8w_A           52 VDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGAD  131 (332)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            456678899999999999999999988775432221 234455555554  59987 55666655544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +|++-...+..|
T Consensus       132 avlv~~P~Y~~~  143 (332)
T 2r8w_A          132 ALLLAPVSYTPL  143 (332)
T ss_dssp             EEEECCCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998877654

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}

Probab=93.64  E-value=0.46  Score=42.58  Aligned_cols=118  Identities=12%  Similarity=0.045  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHH
Q 020428           85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      -|.+.+.+.++.+.+.+++|=++.          ..|-+..-..+.-.++++.+.+  .+||.+-+. +.+..+++++++
T Consensus        16 iD~~~l~~lv~~li~~v~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~--rvpviaGvg-~~~t~~ai~la~   82 (283)
T 2pcq_A           16 LDEEAFRELAQALEPLVDGLLVYG----------SNGEGVHLTPEERARGLRALRP--RKPFLVGLM-EETLPQAEGALL   82 (283)
T ss_dssp             BCHHHHHHHHHHHGGGSSCCEETC----------TTTTGGGSCHHHHHHHHHTCCC--SSCCEEEEC-CSSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhhCCEEEECC----------cCcCchhcCHHHHHHHHHHHHh--CCcEEEeCC-CCCHHHHHHHHH
Confidence            467777777776543377776653          2344444466777788888877  788888775 256789999999


Q ss_pred             HHHHcCCcEEEEeecccCCCCCCc-C---CHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHH
Q 020428          165 RIEKTGVSALAVHGRKVADRPRDP-A---KWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIK  221 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r~~~~~~~~~-~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l  221 (326)
                      .+++.|+|++.+..=    .|..+ .   -++.++.|.+  ++||+ +|     |---+++.+.++.
T Consensus        83 ~A~~~Gadavlv~~P----~y~~~~~~~~l~~~f~~va~--~lPiilYn~P~~tg~~l~~~~~~~La  143 (283)
T 2pcq_A           83 EAKAAGAMALLATPP----RYYHGSLGAGLLRYYEALAE--KMPLFLYHVPQNTKVDLPLEAVEALA  143 (283)
T ss_dssp             HHHHHTCSEEEECCC----CTTGGGTTTHHHHHHHHHHH--HSCEEEEECHHHHCCCCCHHHHHHHT
T ss_pred             HHHhcCCCEEEecCC----cCCCCCCHHHHHHHHHHHhc--CCCEEEEeCccccCcCCCHHHHHHHh
Confidence            999999999987532    12222 1   2456677777  78875 45     4335778777775

>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*

Probab=93.56  E-value=0.07  Score=48.88  Aligned_cols=120  Identities=10%  Similarity=0.117  Sum_probs=81.4

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      ..+++.+.+.++.. .||..+-+..|.+               +++.-.+.++++|+.+ ++.+.+-..-+|+.+++.++
T Consensus       113 ~~~~~~~~~~a~~~-~G~~~~KiKvG~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~  176 (322)
T 1r6w_A          113 NGDPDDLILKLADM-PGEKVAKVRVGLY---------------EAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQF  176 (322)
T ss_dssp             CSCHHHHHHHHHTC-CSSEEEEEECSSS---------------CHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHH
T ss_pred             CCCHHHHHHHHHHh-CCCceEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHH
Confidence            45787776665543 5888888866532               4566667888888876 34444444457888999999


Q ss_pred             HHHHHHc---CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          163 ARRIEKT---GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       163 a~~l~~~---G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+++.   ++.+|       ++..   .+++..+++++.+++||.+.=.+.|.+ + .+++..++|.+++
T Consensus       177 ~~~l~~~~~~~i~~i-------EqP~---~~~~~~~~l~~~~~ipIa~dE~~~~~~-~-~~~~~~a~d~i~i  236 (322)
T 1r6w_A          177 AKYVNPDYRDRIAFL-------EEPC---KTRDDSRAFARETGIAIAWDESLREPD-F-AFVAEEGVRAVVI  236 (322)
T ss_dssp             HHTSCTTTGGGEEEE-------ECCB---SSHHHHHHHHHHHCCCEEESGGGGSTT-C-CCCCCTTEEEEEE
T ss_pred             HHHhhhhccCCeeEE-------ECCC---CChHHHHHHHHhCCCCEEeCCCCCChh-H-hhhhcCCCCEEEE
Confidence            9999887   66654       1111   247778899988999999877777743 3 4443344666655

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=93.52  E-value=0.18  Score=46.71  Aligned_cols=86  Identities=16%  Similarity=0.214  Sum_probs=58.7

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEE-eCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIA-NGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~-nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|-|.+...-... ..++++.+.+.+  ++|||+ .|+..+.+.++..  .+..|||
T Consensus        49 ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad  128 (343)
T 2v9d_A           49 LDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD  128 (343)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            456678899999999999999999988764432221 234455555544  689875 4555555444322  2458999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +||+-...+..|
T Consensus       129 avlv~~P~Y~~~  140 (343)
T 2v9d_A          129 GIVVINPYYWKV  140 (343)
T ss_dssp             EEEEECCSSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999998887655

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=93.49  E-value=1.3  Score=38.32  Aligned_cols=139  Identities=13%  Similarity=0.179  Sum_probs=87.3

Q ss_pred             CCcEEEEE------CCCCHHH---HHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccC
Q 020428           75 RNHVVFQM------GTSDAVR---ALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDV  144 (326)
Q Consensus        75 ~~p~~vQl------~g~~~~~---~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~  144 (326)
                      +.|+.+=|      |..+.++   +.+-++.+.+ |+|+|=+.+=-|..           .-|.+.+.+++++..   +.
T Consensus        54 ~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg-----------~iD~~~~~~Li~~a~---~~  119 (224)
T 2bdq_A           54 GISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNN-----------HIDTEAIEQLLPATQ---GL  119 (224)
T ss_dssp             TCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS-----------SBCHHHHHHHHHHHT---TC
T ss_pred             CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-----------CcCHHHHHHHHHHhC---CC
Confidence            34666655      2345444   4455555666 99999874322322           136778888887665   45


Q ss_pred             cEEEEecCCCCh--HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHH
Q 020428          145 PVTCKIRLLKSS--QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       145 pv~vK~r~g~~~--~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~  220 (326)
                      |++.- |..+..  .+..+-.+.+.+.|++.|.-||.....  .-....+.++++.+..  ++-|++.|||+ .+.+.++
T Consensus       120 ~vTFH-RAFD~~~~~d~~~ale~L~~lGv~rILTSG~~~~~--~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~-~~Ni~~l  195 (224)
T 2bdq_A          120 PLVFH-MAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGE--PIIENIKHIKALVEYANNRIEIMVGGGVT-AENYQYI  195 (224)
T ss_dssp             CEEEC-GGGGGSCTTTHHHHHHHHHHTTCCEEEECSCSSCC--CGGGGHHHHHHHHHHHTTSSEEEECSSCC-TTTHHHH
T ss_pred             eEEEE-CchhccCCcCHHHHHHHHHHcCCCEEECCCCCCCC--cHHHHHHHHHHHHHhhCCCeEEEeCCCCC-HHHHHHH
Confidence            66653 222212  456677888899999999877653321  1223466777776543  57788888987 5667778


Q ss_pred             HHhcCCcEEEe
Q 020428          221 KTAAGASSVMA  231 (326)
Q Consensus       221 l~~~Gad~Vmi  231 (326)
                      ++.+|++.+=.
T Consensus       196 ~~~tGv~e~H~  206 (224)
T 2bdq_A          196 CQETGVKQAHG  206 (224)
T ss_dssp             HHHHTCCEEEE
T ss_pred             HHhhCCCEEcc
Confidence            87799988874

>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}

Probab=93.48  E-value=0.32  Score=46.31  Aligned_cols=71  Identities=11%  Similarity=0.236  Sum_probs=53.2

Q ss_pred             CChHHHHHHH-HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC-CCCHHHHHHHHHhcCCcEEEe
Q 020428          154 KSSQDTVELA-RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD-VFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       154 ~~~~~~~e~a-~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg-I~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      |+.+++++++ +.+++.++.+|       ++ +..+.|++..+++++..++||.+.=- +++..++.++++...+|.|++
T Consensus       267 ~~~~~ai~~~~~~l~~~~i~~i-------Ee-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~i  338 (427)
T 2pa6_A          267 LTREELLDYYKALVDEYPIVSI-------ED-PFHEEDFEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANALLL  338 (427)
T ss_dssp             ECHHHHHHHHHHHHHHSCEEEE-------EC-CSCTTCHHHHHHHHHHSSSEEEESTTTTTCHHHHHHHHHHTCCSEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCcEE-------Ec-CCChhhHHHHHHHHhhCCCeEEeCccccCCHHHHHHHHHhCCCCEEEE
Confidence            4677888885 48888887665       22 22455899999999999999966544 566999999997666898877


Q ss_pred             c
Q 020428          232 A  232 (326)
Q Consensus       232 G  232 (326)
                      =
T Consensus       339 k  339 (427)
T 2pa6_A          339 K  339 (427)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=93.45  E-value=0.8  Score=41.49  Aligned_cols=67  Identities=18%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             HcCCcEEEEeecccCCCCC---CcCCHHHHHHHHHhc--CCcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccch
Q 020428          168 KTGVSALAVHGRKVADRPR---DPAKWGEIADIVAAL--SIPVIANGDVFE-YDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~~~~~---~~~~~~~i~~i~~~~--~iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      +.|+|.|.+.-.|..+.|.   ...+++.+++|.+.+  ++|++.-||=.+ .+++.+++ ..|+.-|=|++.+
T Consensus       182 ~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p~e~i~~ai-~~GV~KiNi~Tdl  254 (306)
T 3pm6_A          182 ATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFTKEIFEKCI-ERGVAKVNVNRAV  254 (306)
T ss_dssp             TTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCCHHHHHHHH-HTTEEEEEESHHH
T ss_pred             HcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCCHHHHHHHH-HcCCeEEEeChHH
Confidence            6999999765444444443   346899999999988  799998887555 46688888 6899888888864

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=93.41  E-value=0.73  Score=42.61  Aligned_cols=89  Identities=7%  Similarity=0.036  Sum_probs=60.3

Q ss_pred             hcccCcEEEEecCCCChHHHHHHHHHHHHcCCc-EEEEeecccCCC-CCC-cCCHHH----HHHHHHhcCCcEE--EeCC
Q 020428          140 RNLDVPVTCKIRLLKSSQDTVELARRIEKTGVS-ALAVHGRKVADR-PRD-PAKWGE----IADIVAALSIPVI--ANGD  210 (326)
Q Consensus       140 ~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d-~i~vh~r~~~~~-~~~-~~~~~~----i~~i~~~~~iPVi--~nGg  210 (326)
                      ...+.||.+-+. |.+.++..+.++.++++|++ +|.+.-...... ... ..+.+.    ++.+++.+++||+  ..-+
T Consensus       125 ~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~  203 (345)
T 3oix_A          125 QPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY  203 (345)
T ss_dssp             STTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred             ccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            345789988875 57789999999999999987 998863322111 011 123444    4455555688986  3344


Q ss_pred             CCCHHHHHHHHHhcCCcEEE
Q 020428          211 VFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~Vm  230 (326)
                       .+.+++.++++..|++++.
T Consensus       204 -~~~~~~a~~~~~aga~~i~  222 (345)
T 3oix_A          204 -FDIVHFDQAAAIFNXYPLT  222 (345)
T ss_dssp             -CCHHHHHHHHHHHTTSCCS
T ss_pred             -CCHHHHHHHHHHhCCCceE
Confidence             5788888888888888764

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=93.38  E-value=0.24  Score=45.11  Aligned_cols=83  Identities=14%  Similarity=0.041  Sum_probs=57.2

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEe-CCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIAN-GDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~n-GgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...-... ..+.++.+.+.+  ++|||+. |+..+.+.++..  .++.|||
T Consensus        26 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad  105 (309)
T 3fkr_A           26 LDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAA  105 (309)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCC
Confidence            456778889999999999999999988774432221 234455555554  6999855 666555544322  2468999


Q ss_pred             EEEeccchh
Q 020428          228 SVMAARGAL  236 (326)
Q Consensus       228 ~VmiGr~~l  236 (326)
                      ++|+-...+
T Consensus       106 avlv~~Pyy  114 (309)
T 3fkr_A          106 MVMAMPPYH  114 (309)
T ss_dssp             EEEECCSCB
T ss_pred             EEEEcCCCC
Confidence            999998765

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=93.29  E-value=0.16  Score=45.79  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEE-EeCCCCCHHHHHHH--HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVI-ANGDVFEYDDFQRI--KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi-~nGgI~s~~d~~~~--l~~~Gad  227 (326)
                      .|.+...++++.+.+.|+++|.+.|-|.+...-... ..+.++.+.+.+  ++||| +.|+..+.+.++..  .+..|||
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad   97 (292)
T 2vc6_A           18 IDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGAD   97 (292)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCC
Confidence            456778899999999999999999888775433222 234455555544  58987 55666555544322  2468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +||+-...+..|
T Consensus        98 avlv~~P~y~~~  109 (292)
T 2vc6_A           98 GVLIVSPYYNKP  109 (292)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEEcCCCCCCC
Confidence            999998877655

>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7

Probab=93.23  E-value=0.61  Score=44.22  Aligned_cols=168  Identities=7%  Similarity=-0.007  Sum_probs=0.0

Q ss_pred             eeecccCCCCcEEEEECCCC-----------HHHHHHHHHHhhc--CCC----EEEEccCCCc-----------------
Q 020428           67 VFRTCHQERNHVVFQMGTSD-----------AVRALTAAKMVCK--DVA----AIDINMGCPK-----------------  112 (326)
Q Consensus        67 ~~~~~~~~~~p~~vQl~g~~-----------~~~~~~aa~~~~~--~~d----~idlN~gcP~-----------------  112 (326)
                      +++...+.+.|+++|+..+.           ++.+...++.+.+  +++    .+-+.=|-|.                 
T Consensus        30 il~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDHg~~~~w~~~~~~~am~~a~e~  109 (420)
T 2fiq_A           30 ALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDHLGPNCWQQENVDAAMEKSVEL  109 (420)
T ss_dssp             HHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSGGGTTSBHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCCCCCccccccchhhhhhhHHHH


Q ss_pred             ---------ccccccccc------ccccCChHH--HHHHHHHHhhc------------ccCc--------EEEEecCCCC
Q 020428          113 ---------SFSVSGGMG------AALLSKPEL--IHDILTMLKRN------------LDVP--------VTCKIRLLKS  155 (326)
Q Consensus       113 ---------~~~~~~~~G------~~l~~~p~~--~~~iv~~v~~~------------~~~p--------v~vK~r~g~~  155 (326)
                               .++-=|+.-      -.+..+-..  ..++++...+.            .+.-        ....-....+
T Consensus       110 i~~aI~aGFtSVMiD~S~~~~~~~~pl~eNi~~~rt~elv~~Ah~~~~~~~eaElG~vgG~Ev~v~~~~~~~~~~~~~T~  189 (420)
T 2fiq_A          110 VKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHITH  189 (420)
T ss_dssp             HHHHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECSSCC----------CCCCC
T ss_pred             HHHHHHhCCCEEEECCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHcccCCcccceEEeeeecCCCCCcccccCCCCCCC


Q ss_pred             hHHHHHHHH----HHHHcCCcE-------EEEeecccCCCCCCcC-CHHHHHHHHHhcCCc-EEE---eCCCCCHHHHHH
Q 020428          156 SQDTVELAR----RIEKTGVSA-------LAVHGRKVADRPRDPA-KWGEIADIVAALSIP-VIA---NGDVFEYDDFQR  219 (326)
Q Consensus       156 ~~~~~e~a~----~l~~~G~d~-------i~vh~r~~~~~~~~~~-~~~~i~~i~~~~~iP-Vi~---nGgI~s~~d~~~  219 (326)
                      ++++.++++    .+.+.|+|.       |.|.-.|.-+.|..+. |++.+++|++.+++| ++.   +|+=.+.+++.+
T Consensus       190 PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~~~~ld~e~l~~I~~~v~~P~LVle~HGgSg~~~e~l~~  269 (420)
T 2fiq_A          190 VEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIENTRMVYEAHSTDYQTRTAYWE  269 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSCEECCCGGGGHHHHHHHTTSSCEEEESCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCCCCCcCHHHHHHHHHhcCCCCEEEecCCCCCCCHHHHHH


Q ss_pred             HHHhcCCcEEEeccch
Q 020428          220 IKTAAGASSVMAARGA  235 (326)
Q Consensus       220 ~l~~~Gad~VmiGr~~  235 (326)
                      ++ ..|..-+=||+.+
T Consensus       270 ~v-~~Gi~kiNV~t~l  284 (420)
T 2fiq_A          270 LV-RDHFAILKVGPAL  284 (420)
T ss_dssp             HH-HTTEEEEEECHHH
T ss_pred             HH-HcCCCEEEECHHH

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=93.22  E-value=2.1  Score=37.92  Aligned_cols=137  Identities=9%  Similarity=0.136  Sum_probs=89.6

Q ss_pred             cEEEE-ECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           77 HVVFQ-MGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQ-l~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      ++++. .+. .+++...+.++.+++ |++.|-...--|...    .||-.=+  .+.-.+++.++.+..++|+..-+   
T Consensus        24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts----~~~~~g~--~~egl~~l~~~~~~~Gl~~~te~---   94 (262)
T 1zco_A           24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTS----PYSFQGY--GEKALRWMREAADEYGLVTVTEV---   94 (262)
T ss_dssp             CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSS----TTSCCCC--THHHHHHHHHHHHHHTCEEEEEC---
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCC----cccccCc--cHHHHHHHHHHHHHcCCcEEEee---
Confidence            55544 322 367888888888877 888887665444322    1111101  13334555666677799988766   


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC-CHHHHHHHH---HhcCC-cE
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF-EYDDFQRIK---TAAGA-SS  228 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~-s~~d~~~~l---~~~Ga-d~  228 (326)
                      +++..    +..+.+. +|++-|-+|+..       +.++++++.+ ++.||+..-|.. |++++....   ...|. +.
T Consensus        95 ~d~~~----~~~l~~~-vd~~kIga~~~~-------n~~ll~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i  161 (262)
T 1zco_A           95 MDTRH----VELVAKY-SDILQIGARNSQ-------NFELLKEVGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENV  161 (262)
T ss_dssp             CCGGG----HHHHHHH-CSEEEECGGGTT-------CHHHHHHHTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCE
T ss_pred             CCHHh----HHHHHhh-CCEEEECccccc-------CHHHHHHHHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeE
Confidence            44433    4555666 999999988655       5678888876 799999998887 998887665   34565 55


Q ss_pred             EEeccch
Q 020428          229 VMAARGA  235 (326)
Q Consensus       229 VmiGr~~  235 (326)
                      +.+=||.
T Consensus       162 ~L~~RG~  168 (262)
T 1zco_A          162 ILCERGI  168 (262)
T ss_dssp             EEEECCB
T ss_pred             EEEECCC
Confidence            5556664

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=93.21  E-value=1.1  Score=40.34  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=58.5

Q ss_pred             ECCCCHHHHHHHHHHhhc-CCCEEEEcc-CCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-ChHH
Q 020428           82 MGTSDAVRALTAAKMVCK-DVAAIDINM-GCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-SSQD  158 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~-~~d~idlN~-gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~  158 (326)
                      +...|+-.    |+++.+ |++.|=+.- ++-.    .-|+-....-..+.+...++.|...++.||++-+-.|+ +..+
T Consensus        24 ~~a~D~~s----A~~~~~aG~~ai~vsg~~~a~----~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~   95 (295)
T 1s2w_A           24 MEAHNGLS----ARIVQEAGFKGIWGSGLSVSA----QLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNN   95 (295)
T ss_dssp             EEECSHHH----HHHHHHHTCSCEEECCHHHHH----TC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHH
T ss_pred             ecCCCHHH----HHHHHHcCCCEEEeChHHHHH----hCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHH
Confidence            45566433    334444 888887752 1111    01222222334556777788888888999999998874 4667


Q ss_pred             HHHHHHHHHHcCCcEEEEeecc
Q 020428          159 TVELARRIEKTGVSALAVHGRK  180 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~  180 (326)
                      ..+.++.+.++|+++|++-+..
T Consensus        96 v~~~v~~l~~aGaagv~iED~~  117 (295)
T 1s2w_A           96 ARRLVRKLEDRGVAGACLEDKL  117 (295)
T ss_dssp             HHHHHHHHHHTTCCEEEEECBC
T ss_pred             HHHHHHHHHHcCCcEEEECCCC
Confidence            8888999999999999998764

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=93.20  E-value=0.33  Score=44.34  Aligned_cols=100  Identities=14%  Similarity=0.250  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHH-hhcCCCEEEEccCCCcccccccccccc---ccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHH
Q 020428           86 DAVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAA---LLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        86 ~~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~---l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e  161 (326)
                      +++...+.|+. +.+|+|.||||+-+-.|       |+.   .....+.+..+|+++++.+++|||+-+.-       .+
T Consensus        31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-------Ga~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~~-------~~   96 (314)
T 2vef_A           31 ALEQALQQARKLIAEGASMLDIGGESTRP-------GSSYVEIEEEIQRVVPVIKAIRKESDVLISIDTWK-------SQ   96 (314)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCC------------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSC-------HH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhhCCceEEEeCCC-------HH
Confidence            45555554444 44599999998743222       221   12445567778888888789999997742       45


Q ss_pred             HHHHHHHcCCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428          162 LARRIEKTGVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIAN  208 (326)
Q Consensus       162 ~a~~l~~~G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n  208 (326)
                      +++...++|++.|. |+|...+     +    .+..+....+.|++..
T Consensus        97 Va~aAl~aGa~iINDVsg~~~d-----~----~m~~v~a~~~~~vvlm  135 (314)
T 2vef_A           97 VAEAALAAGADLVNDITGLMGD-----E----KMPHVVAEARAQVVIM  135 (314)
T ss_dssp             HHHHHHHTTCCEEEETTTTCSC-----T----THHHHHHHHTCEEEEE
T ss_pred             HHHHHHHcCCCEEEECCCCCCC-----h----HHHHHHHHcCCCEEEE
Confidence            67777778998884 4443211     1    2334445568888874

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=93.20  E-value=1.9  Score=38.54  Aligned_cols=115  Identities=15%  Similarity=0.200  Sum_probs=67.9

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE-EEEecC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV-TCKIRL  152 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv-~vK~r~  152 (326)
                      +.|+ +-+...|.    -.|+++.+ |+|.|=+  |--... ..-|+-..+.-..+.+...+++|+..++.|+ .+-+.-
T Consensus        33 g~~i-~~~tayDa----~sA~l~e~aG~d~ilv--GdSl~~-~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pf  104 (281)
T 1oy0_A           33 GHKW-AMLTAYDY----STARIFDEAGIPVLLV--GDSAAN-VVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPF  104 (281)
T ss_dssp             TCCE-EEEECCSH----HHHHHHHTTTCCEEEE--CTTHHH-HTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCT
T ss_pred             CCcE-EEEeCcCH----HHHHHHHHcCCCEEEE--CHHHHH-HHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence            3344 34566663    34555655 8998833  322211 1223333444456677777888888777554 455544


Q ss_pred             C---CChHHHHHH-HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          153 L---KSSQDTVEL-ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       153 g---~~~~~~~e~-a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      |   .+++++.+- .+.++++|+++|.+-+..        ...+.|+.+.+. +|||+
T Consensus       105 gsy~~s~~~a~~na~rl~~eaGa~aVklEdg~--------e~~~~I~al~~a-gIpV~  153 (281)
T 1oy0_A          105 GSYEAGPTAALAAATRFLKDGGAHAVKLEGGE--------RVAEQIACLTAA-GIPVM  153 (281)
T ss_dssp             TSSTTCHHHHHHHHHHHHHTTCCSEEEEEBSG--------GGHHHHHHHHHH-TCCEE
T ss_pred             CcccCCHHHHHHHHHHHHHHhCCeEEEECCcH--------HHHHHHHHHHHC-CCCEE
Confidence            3   246666664 455566999999998751        124556666553 79987

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=93.06  E-value=0.27  Score=45.48  Aligned_cols=85  Identities=19%  Similarity=0.150  Sum_probs=55.3

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE-eCCCCCHHHHHHH--HHhcCCcEEE
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA-NGDVFEYDDFQRI--KTAAGASSVM  230 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~-nGgI~s~~d~~~~--l~~~Gad~Vm  230 (326)
                      .|.+...++++.+.+.|+++|.+-|-|.+...........+-+..-.-++|||+ .|+..+.+.++..  .++.|||+||
T Consensus        44 ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavl  123 (344)
T 2hmc_A           44 PDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLM  123 (344)
T ss_dssp             BCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            456678899999999999999999988775433222222222222223799875 4555554444322  2457999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +-...+..
T Consensus       124 v~~P~y~~  131 (344)
T 2hmc_A          124 VIPRVLSR  131 (344)
T ss_dssp             ECCCCSSS
T ss_pred             ECCCccCC
Confidence            99876655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1vhna_	305	c.1.4.1 (A:) Putative flavin oxidoreducatase TM009	4e-32
d1ep3a_	311	c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco	7e-07
d1gtea2	312	c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas	2e-06

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

 Score =  119 bits (299), Expect = 4e-32
 Identities = 71/317 (22%), Positives = 124/317 (39%), Gaps = 33/317 (10%)

Query: 6   KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDS 65
           K+ LAPM       FR LA ++GAD  + E +     L   ++  E +            
Sbjct: 2   KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL------------ 49

Query: 66  VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALL 125
                   ERN V  Q+  S+      AA+++ +    ID+N GCP    V  G G ALL
Sbjct: 50  ----PQPHERN-VAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALL 104

Query: 126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRP 185
                   I+  L++++    + K RL     +  E+ R + + GV  + +H R V    
Sbjct: 105 KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSF 164

Query: 186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ 245
              A+W  ++ +   +   V  +GD+F  +D +R    +G   ++ ARGA+    IF   
Sbjct: 165 TGRAEWKALSVLEKRIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQI 222

Query: 246 GKLHWEDVKREYVRKSIFW--------ENNVKSTKHTLKEMIMHYSSL--ELPEGK---- 291
                     E  R+ I              K  +  + EM    +    +L   +    
Sbjct: 223 KDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFRE 282

Query: 292 AIIKSETLADIAKLYEE 308
            ++K E +  + +++  
Sbjct: 283 KVMKIEEVQILKEMFYN 299

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 47.7 bits (112), Expect = 7e-07
 Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 30/217 (13%)

Query: 50  NEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVA---AIDI 106
           N        +E      +           +             A      D A   AI++
Sbjct: 72  NAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIEL 131

Query: 107 NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRI 166
           N+ CP         G A  + PE+   ++   K    VP+  K+    +  D V +A+ +
Sbjct: 132 NISCPNVK----HGGQAFGTDPEVAAALVKACKAVSKVPLYVKLS--PNVTDIVPIAKAV 185

Query: 167 EKTGVSALAVHGRKVADRP--------------------RDPAKWGEIADIVAALSIPVI 206
           E  G   L +    +  R                       P     I  +   + IP+I
Sbjct: 186 EAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPII 245

Query: 207 ANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS 243
             G V    D       AGAS+V        +  +  
Sbjct: 246 GMGGVANAQDVLE-MYMAGASAVAVGTANFADPFVCP 281

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 31/198 (15%)

Query: 68  FRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSK 127
                            +       + K       A+++N+ CP       GMG A    
Sbjct: 97  KADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCP-HGMGERGMGLACGQD 155

Query: 128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK------- 180
           PEL+ +I   +++ + +P   K+    +  D V +AR  ++ G   +             
Sbjct: 156 PELVRNICRWVRQAVQIPFFAKLTP--NVTDIVSIARAAKEGGADGVTATNTVSGLMGLK 213

Query: 181 -------------------VADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRI 220
                              V+     P     +  I  AL   P++A G +   +   + 
Sbjct: 214 ADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQ- 272

Query: 221 KTAAGASSVMAARGALWN 238
              +GAS +         
Sbjct: 273 FLHSGASVLQVCSAVQNQ 290

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	100.0
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	99.97
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	99.97
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	99.96
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.95
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	99.93
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	99.93
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	99.92
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.91
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	99.9
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.87
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.85
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	99.8
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	99.78
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	99.78
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	99.78
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	99.35
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	99.35
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	99.28
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.25
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	99.24
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	99.23
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.22
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	99.14
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	99.11
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	99.08
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	99.07
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	99.04
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	99.03
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	99.03
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	99.03
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	99.02
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	98.94
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	98.86
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	98.84
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	98.77
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	98.75
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	98.69
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	98.57
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	98.46
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	98.45
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	98.45
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	98.45
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	98.43
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	98.43
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	98.42
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	98.41
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	98.4
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	98.36
d2gl5a1	278	Putative dehydratase protein STM2273 {Salmonella t	98.36
d2chra1	244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	98.32
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	98.31
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	98.26
d1rvka1	255	Hypothetical protein Atu3453 {Agrobacterium tumefa	98.25
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	98.19
d1nu5a1	243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	98.17
d1muca1	242	Muconate-lactonizing enzyme {Pseudomonas putida [T	98.16
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	98.11
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	98.03
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	98.02
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	98.02
d1tzza1	247	Hypothetical protein Bll6730 {Bradyrhizobium japon	97.99
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	97.99
d1jpma1	234	L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId:	97.97
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	97.93
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	97.89
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	97.83
d2mnra1	227	Mandelate racemase {Pseudomonas putida [TaxId: 303	97.81
d1yeya1	252	RTS beta protein {Xanthomonas campestris pv. campe	97.73
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	97.68
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	97.6
d1sjda1	242	N-acylamino acid racemase {Amycolatopsis sp. [TaxI	97.59
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	97.57
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	97.51
d1wufa1	244	N-acylamino acid racemase {Listeria innocua [TaxId	97.45
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.41
d1r0ma1	243	N-acylamino acid racemase {Deinococcus radiodurans	97.39
d2gdqa1	256	Hypothetical protein YitF {Bacillus subtilis [TaxI	97.38
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	97.37
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.19
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	97.17
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	97.16
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	97.11
d1wuea1	241	N-acylamino acid racemase {Enterococcus faecalis [	97.06
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	97.05
d1jdfa1	309	D-glucarate dehydratase {Escherichia coli [TaxId:	97.02
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	97.01
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	97.0
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	96.97
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	96.96
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	96.93
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	96.89
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	96.89
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	96.83
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	96.79
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	96.72
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	96.68
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	96.67
d1oy0a_	262	Ketopantoate hydroxymethyltransferase PanB {Mycoba	96.63
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	96.54
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	96.54
d1jpdx1	208	L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId:	96.54
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	96.53
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	96.52
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	96.51
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	96.44
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	96.44
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	96.37
d1kkoa1	251	beta-Methylaspartase {Citrobacter amalonaticus [Ta	96.33
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	96.2
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	96.14
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	96.13
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	96.13
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	96.09
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	96.02
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	95.78
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	95.78
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	95.76
d1geha1	307	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	95.72
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	95.7
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	95.59
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	95.59
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	95.56
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	95.5
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	95.4
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	95.39
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	95.31
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	95.3
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	95.29
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	95.17
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	95.11
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	95.0
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	94.92
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	94.81
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	94.76
d1kcza1	253	beta-Methylaspartase {Clostridium tetanomorphum [T	94.74
d2d69a1	291	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	94.72
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	94.66
d1f6ya_	262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	94.52
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	94.45
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	94.42
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	94.24
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	94.14
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	94.06
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	93.94
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	93.9
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	93.5
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	92.99
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	92.85
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	92.8
d1l6wa_	220	Decameric fructose-6-phosphate aldolase/transaldol	92.7
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	92.59
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	92.19
d1pkla2	258	Pyruvate kinase, N-terminal domain {Leishmania mex	91.81
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	91.19
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	91.17
d1e0ta2	246	Pyruvate kinase, N-terminal domain {Escherichia co	91.16
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	90.91
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	90.72
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	90.6
d1wx0a1	211	Decameric fructose-6-phosphate aldolase/transaldol	90.45
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	90.27
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	90.12
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	89.98
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	89.94
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	89.82
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	89.56
d1bwva1	328	Ribulose 1,5-bisphosphate carboxylase-oxygenase {G	89.36
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	89.16
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	89.07
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	88.98
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	88.95
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	88.85
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	88.62
d1eyea_	270	Dihydropteroate synthetase {Mycobacterium tubercul	88.59
d1a3xa2	265	Pyruvate kinase, N-terminal domain {Baker's yeast	88.54
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	88.5
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	88.12
d1r6wa1	221	O-succinylbenzoate synthase {Escherichia coli [Tax	87.58
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	87.49
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	87.38
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	87.32
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	86.67
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	86.53
d2g50a2	282	Pyruvate kinase, N-terminal domain {Rabbit (Orycto	86.35
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	86.27
d2basa1	261	Hypothetical protein YkuI, N-terminal domain {Baci	86.13
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	85.78
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	85.78
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	85.72
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	85.26
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	85.12
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	84.77
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	84.6
d2p10a1	197	Uncharacterized protein Mll9387 {Mesorhizobium lot	84.49
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	84.31
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	84.3
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	84.28
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	84.03
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	83.63
d1bwva1	328	Ribulose 1,5-bisphosphate carboxylase-oxygenase {G	83.61
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	83.36
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.66
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	82.02
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	81.8
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	81.68
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	81.65
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	81.57
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	80.38

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.5e-66  Score=476.10  Aligned_cols=284  Identities=24%  Similarity=0.371  Sum_probs=239.6

Q ss_pred             ceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEECCC
Q 020428            6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQMGTS   85 (326)
Q Consensus         6 ~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl~g~   85 (326)
                      |++||||+|+||.+||.+|+++|++++||||++++.+.+..+..+              .  +...++ +.|+++||+|+
T Consensus         2 ki~LAPM~g~td~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~--------------~--~~~~~~-e~p~~~Ql~g~   64 (305)
T d1vhna_           2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTE--------------E--LLPQPH-ERNVAVQIFGS   64 (305)
T ss_dssp             EEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHH--------------H--HSCCTT-CTTEEEEEECS
T ss_pred             eEEEECcCCCccHHHHHHHHHHCcCEEEECCEEechhhhCChhhH--------------h--hccCCC-CCCeEEEEecc
Confidence            689999999999999999999999999999999998876433211              0  112233 35999999999


Q ss_pred             CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHH
Q 020428           86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARR  165 (326)
Q Consensus        86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~  165 (326)
                      +|+.+.+||+++.+++|+||||||||+++++++++|++||++|+++.++++++++++++|||||+|+|++..++.++++.
T Consensus        65 ~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~  144 (305)
T d1vhna_          65 EPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRI  144 (305)
T ss_dssp             CHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHH
T ss_pred             chhhhhhhhhhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHH
Confidence            99999999999878999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccccc
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQ  245 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~  245 (326)
                      ++++|+++|+|||||+.|.|++++||+.|+++++  ++|||+||||.|.+|+.++++.+||||||||||++.|||+|.+.
T Consensus       145 l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i  222 (305)
T d1vhna_         145 LVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQI  222 (305)
T ss_dssp             HHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHH
T ss_pred             HHHhCCcEEEechhhhhhccccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhh
Confidence            9999999999999999999999999999998876  69999999999999999999889999999999999999999862


Q ss_pred             ------C---CCCHHH---HHHHHHHHHHhhccCcchHHHHHHHHHHHhhcC--CCchh----HHHhccCCHHHHHHHHH
Q 020428          246 ------G---KLHWED---VKREYVRKSIFWENNVKSTKHTLKEMIMHYSSL--ELPEG----KAIIKSETLADIAKLYE  307 (326)
Q Consensus       246 ------~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~  307 (326)
                            +   ..++.+   .+.+|++.+.++.++    +..+..|++|+.+|  ++|+.    ++|++++|.+++.++|+
T Consensus       223 ~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~----~~~l~~~rkhl~~~~kg~p~ak~~R~~l~~~~~~~el~~~l~  298 (305)
T d1vhna_         223 KDFLRSGKYSEPSREEILRTFERHLELLIKTKGE----RKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFY  298 (305)
T ss_dssp             HHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTHHHHTTTCTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             hhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCc----chHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCHHHHHHHHH
Confidence                  1   223444   344566666665444    33444444433332  67764    57899999999998876


Q ss_pred             hhhhhHH
Q 020428          308 EEKYYQF  314 (326)
Q Consensus       308 ~~~~~~~  314 (326)
                        +|++.
T Consensus       299 --~~~~e  303 (305)
T d1vhna_         299 --NFIKE  303 (305)
T ss_dssp             --HHHHH
T ss_pred             --HHHHh
Confidence              44433

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=8.9e-31  Score=244.02  Aligned_cols=239  Identities=13%  Similarity=0.148  Sum_probs=189.0

Q ss_pred             CCCCCceEEccccC---------CCCHHHHHHHHHc--CCCeEEeCceecccccccccccccccCcc--cccccCCccee
Q 020428            1 MDYQNKLVLAPMVR---------VGTLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVV   67 (326)
Q Consensus         1 l~l~~~iilAPM~g---------~t~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~   67 (326)
                      ++++||+++|||..         .|+..++.+.++.  |+|+++||.+.++.-....+   ..++.+  ++++  ..+.+
T Consensus        13 ~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~---~~~~~~~d~~i~--~~k~l   87 (337)
T d1z41a1          13 MTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITD---QDLGIWSDEHIE--GFAKL   87 (337)
T ss_dssp             EEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSST---TSCBCSSTHHHH--HHHHH
T ss_pred             EEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEcccccccc---CccccccHHHHH--HHHHH
Confidence            46899999999963         2334555555544  89999999887665332211   111111  1111  11224


Q ss_pred             eecccCCCCcEEEEECCCC-----------------------------------HHHHHHHHHHhhc-CCCEEEEccC--
Q 020428           68 FRTCHQERNHVVFQMGTSD-----------------------------------AVRALTAAKMVCK-DVAAIDINMG--  109 (326)
Q Consensus        68 ~~~~~~~~~p~~vQl~g~~-----------------------------------~~~~~~aa~~~~~-~~d~idlN~g--  109 (326)
                      .+.+|+.+.++++||+...                                   .++|++||+++.+ |||+||||++  
T Consensus        88 ~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahG  167 (337)
T d1z41a1          88 TEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHG  167 (337)
T ss_dssp             HHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTT
T ss_pred             HHHhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCc
Confidence            5667888889999996321                                   2789999999987 9999999987  


Q ss_pred             -------CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC------CCChHHHHHHHHHHHHcCCcEEEE
Q 020428          110 -------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL------LKSSQDTVELARRIEKTGVSALAV  176 (326)
Q Consensus       110 -------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~i~v  176 (326)
                             +|..|.|++.||+++.++.+++.||+++|+++++.|+.++++.      +.+.++..++++.++++|+|.+++
T Consensus       168 yLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~  247 (337)
T d1z41a1         168 YLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDC  247 (337)
T ss_dssp             SHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCccccc
Confidence                   8999999999999999999999999999999999999999987      356788999999999999999999


Q ss_pred             eecccCCC---CCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          177 HGRKVADR---PRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       177 h~r~~~~~---~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +.......   .......+..+.+++.+++||+++|+|+|++++++++++..||.|++||+++.||+|.++
T Consensus       248 s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k  318 (337)
T d1z41a1         248 SSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFART  318 (337)
T ss_dssp             ECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHH
T ss_pred             ccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHH
Confidence            86644321   222346778899999999999999999999999999975559999999999999999876

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.7e-30  Score=237.84  Aligned_cols=239  Identities=14%  Similarity=0.124  Sum_probs=180.2

Q ss_pred             CCCCCceEEccccCCC----C---HHHHHHHHH--cCCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVRVG----T---LPFRLLAAQ--YGADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~t----~---~~fr~~~~~--~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      ++++|||++|||....    +   .......++  .|+++++||.+.++......+   ...+.++  +++  ..+.+.+
T Consensus        14 ~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~---~~~~~~~d~~i~--~~k~l~~   88 (330)
T d1ps9a1          14 TTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGME---GGAMLNDASQIP--HHRTITE   88 (330)
T ss_dssp             CEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBT---TCCBCCSGGGHH--HHHHHHH
T ss_pred             EEeCCCcEeCCCCCCcCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccC---CCcccCCccccc--cccccee
Confidence            5789999999996422    1   112222222  389999999998765332221   1111111  111  1122456


Q ss_pred             cccCCCCcEEEEECCCC----------------------------------HHHHHHHHHHhhc-CCCEEEEccC-----
Q 020428           70 TCHQERNHVVFQMGTSD----------------------------------AVRALTAAKMVCK-DVAAIDINMG-----  109 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~~----------------------------------~~~~~~aa~~~~~-~~d~idlN~g-----  109 (326)
                      ..|+.+..+++||+...                                  .++|++||+++++ |||+||||++     
T Consensus        89 ~vh~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl  168 (330)
T d1ps9a1          89 AVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLI  168 (330)
T ss_dssp             HHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHH
T ss_pred             eeecCCCeehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccchHHHH
Confidence            67888889999997321                                  2789999999987 9999999988     


Q ss_pred             ----CCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC------CCChHHHHHHHHHHHHcCCcEEEEe
Q 020428          110 ----CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL------LKSSQDTVELARRIEKTGVSALAVH  177 (326)
Q Consensus       110 ----cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~------g~~~~~~~e~a~~l~~~G~d~i~vh  177 (326)
                          +|..|.|++.||+++.++.+++.|++++|+++++  .+|.+|+..      +.+.+++.++++.++++|+|.++++
T Consensus       169 ~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~  248 (330)
T d1ps9a1         169 NEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTG  248 (330)
T ss_dssp             HHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcc
Confidence                8999999999999999999999999999999995  556666654      3467899999999999999999987


Q ss_pred             ecccCCCC---C----CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          178 GRKVADRP---R----DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       178 ~r~~~~~~---~----~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ........   .    ........+++++.+++|||++|+|+|++++++++++..||.|++||+++.||+|..+
T Consensus       249 ~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k  322 (330)
T d1ps9a1         249 IGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSK  322 (330)
T ss_dssp             ECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHH
T ss_pred             cccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHH
Confidence            65432211   1    1123455678888899999999999999999999975569999999999999999887

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.96  E-value=1.4e-28  Score=229.38  Aligned_cols=242  Identities=12%  Similarity=0.033  Sum_probs=178.8

Q ss_pred             CCCCCceEEccccCCC--C-----HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccC
Q 020428            1 MDYQNKLVLAPMVRVG--T-----LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ   73 (326)
Q Consensus         1 l~l~~~iilAPM~g~t--~-----~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (326)
                      ++++||+++|||+...  +     ..++..-.+.|+++++||++.++.-..........+...++++  ..+.+.+..|+
T Consensus        18 ~~l~NRiv~apm~~~~~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~--~~~~l~~~vh~   95 (340)
T d1djqa1          18 KTLRNRFYQVPHAIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVR--NLKAMTDEVHK   95 (340)
T ss_dssp             EEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHH--HHHHHHHHHHH
T ss_pred             EEECCCeEeCCCCCCCCCCCCHHHHHHHHHHhccCeEEEEEEEEEeccccccCCCCCccccceeecc--hhhhhHHHhhc
Confidence            4689999999998532  1     1232233344899999999987654322111000011111111  11224566788


Q ss_pred             CCCcEEEEECCCC---------------------------------------HHHHHHHHHHhhc-CCCEEEEccC----
Q 020428           74 ERNHVVFQMGTSD---------------------------------------AVRALTAAKMVCK-DVAAIDINMG----  109 (326)
Q Consensus        74 ~~~p~~vQl~g~~---------------------------------------~~~~~~aa~~~~~-~~d~idlN~g----  109 (326)
                      .+..+++||+...                                       .++|++||+++++ |||+||||++    
T Consensus        96 ~g~~i~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~ahGyL  175 (340)
T d1djqa1          96 YGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYL  175 (340)
T ss_dssp             TTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCH
T ss_pred             ccceeeEeeeeccccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHhccceeeeeccccch
Confidence            8889999995211                                       2689999999988 9999999998    


Q ss_pred             -----CCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC-------CChHHHHHHHHHHHHcCCcEEE
Q 020428          110 -----CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL-------KSSQDTVELARRIEKTGVSALA  175 (326)
Q Consensus       110 -----cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g-------~~~~~~~e~a~~l~~~G~d~i~  175 (326)
                           ||..|.|+++||+++.++.+++.||+++|++++  +.||.+|+...       .+.+.....+..+++.|+|.+.
T Consensus       176 l~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~  255 (340)
T d1djqa1         176 PLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWD  255 (340)
T ss_dssp             HHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEE
T ss_pred             hhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceee
Confidence                 899999999999999999999999999999999  56777777641       1233455666788899999999


Q ss_pred             EeecccC---------CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          176 VHGRKVA---------DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       176 vh~r~~~---------~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ++.....         ..+.....++..+.+++.+++|||++|+|+|++++++++++..||+|++||+++.||+|.++
T Consensus       256 vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k  333 (340)
T d1djqa1         256 ITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQK  333 (340)
T ss_dssp             EEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHH
T ss_pred             eeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHH
Confidence            8765321         11223456778889999999999999999999999999965559999999999999999886

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.95  E-value=2.9e-28  Score=224.33  Aligned_cols=237  Identities=18%  Similarity=0.232  Sum_probs=171.9

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-cccccc----ccccCcccccccCCcce---eeec--
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRV----NEYIGSTDFVEKGTDSV---VFRT--   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~----~~~~~~~~~~~~~~~~~---~~~~--   70 (326)
                      ++|+|||++|....-++..+...+...|+|.+.++.++.++-. ...+..    ...+....+-+...+..   ....  
T Consensus        14 l~l~nPi~~aAG~~~~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~   93 (311)
T d1ep3a_          14 LDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKLPWLN   93 (311)
T ss_dssp             EEESSSEEECTTSSTTSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTHHHHHH
T ss_pred             EEcCCCcEECCCCCCCCHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccccchhHHHHhhhhhhhhh
Confidence            4689999999433234555666666778888888877655321 111100    00000000000000000   0110  


Q ss_pred             ccCCCCcEEEEECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           71 CHQERNHVVFQMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      ....+.|+++|++|++++++.++++.+.+  ++|+||||+|||+..    +.+.....+|+.+.+++.++++..++|+++
T Consensus        94 ~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~v  169 (311)
T d1ep3a_          94 ENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK----HGGQAFGTDPEVAAALVKACKAVSKVPLYV  169 (311)
T ss_dssp             HHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG----GTTEEGGGCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             cccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCccc----ccccccccCHHHHHHHHHHHHhccCCCeee
Confidence            12234699999999999999999888764  789999999999763    445667789999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC----------------CCC----cCCHHHHHHHHHhcCCcEEEe
Q 020428          149 KIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR----------------PRD----PAKWGEIADIVAALSIPVIAN  208 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~----------------~~~----~~~~~~i~~i~~~~~iPVi~n  208 (326)
                      |++.+..  +..++++.++++|++.+++++++....                .++    +..|+.++++++.+++|||+|
T Consensus       170 kl~~~~~--~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~  247 (311)
T d1ep3a_         170 KLSPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGM  247 (311)
T ss_dssp             EECSCSS--CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEEC
T ss_pred             eeccccc--chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEe
Confidence            9998643  456889999999999999987653211                112    335889999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      |||.|++|+.+++ .+|||+||+|||++.+||+|.+
T Consensus       248 GGI~s~~Da~~~i-~~GAd~V~ig~~~~~~P~i~~~  282 (311)
T d1ep3a_         248 GGVANAQDVLEMY-MAGASAVAVGTANFADPFVCPK  282 (311)
T ss_dssp             SSCCSHHHHHHHH-HHTCSEEEECTHHHHCTTHHHH
T ss_pred             CCcCCHHHHHHHH-HcCCCEEEecHHHHcCChHHHH
Confidence            9999999999999 6899999999999999999876

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.93  E-value=5.7e-26  Score=213.26  Aligned_cols=236  Identities=12%  Similarity=0.155  Sum_probs=177.8

Q ss_pred             CCCCCceEEccccCC--------CCHHH-HHHHHHcCCCeEEeCceecccccccccccccccCccc--ccccCCcceeee
Q 020428            1 MDYQNKLVLAPMVRV--------GTLPF-RLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFR   69 (326)
Q Consensus         1 l~l~~~iilAPM~g~--------t~~~f-r~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   69 (326)
                      +++|||+++|||...        ++..+ ....++.|+|+++||.+.++.-....+   ...+.++  +++  ..+.+.+
T Consensus        13 ~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~---~~~~l~~d~~i~--~~k~l~~   87 (363)
T d1vyra_          13 VTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYA---GAPGLHSPEQIA--AWKKITA   87 (363)
T ss_dssp             EEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCST---TCCBSSSHHHHH--HHHHHHH
T ss_pred             EEECCCeEEccccCCcCCCCCCCCHHHHHHHHHHHcCcCEEEEeeeEECccccCCC---CCCccCChhhcc--cchhhhh
Confidence            468999999999742        22222 334445578999999888765432221   1122211  111  1122456


Q ss_pred             cccCCCCcEEEEECCCC------------------------------------------------------HHHHHHHHH
Q 020428           70 TCHQERNHVVFQMGTSD------------------------------------------------------AVRALTAAK   95 (326)
Q Consensus        70 ~~~~~~~p~~vQl~g~~------------------------------------------------------~~~~~~aa~   95 (326)
                      .+|+.+.++++||++..                                                      .++|++||+
T Consensus        88 ~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~  167 (363)
T d1vyra_          88 GVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVA  167 (363)
T ss_dssp             HHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHH
T ss_pred             hhhhcCCeeeeeeeccCccccccccCCCcceeecccccccccccccCcccccccCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence            67888889999994210                                                      257999999


Q ss_pred             Hhhc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecC----------CC
Q 020428           96 MVCK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRL----------LK  154 (326)
Q Consensus        96 ~~~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~----------g~  154 (326)
                      ++++ |||+||||++         +|..|.|+|.||+++.++.+++.||+++||++++ -+|.+++..          +.
T Consensus       168 rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~  247 (363)
T d1vyra_         168 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPN  247 (363)
T ss_dssp             HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTT
T ss_pred             HHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhccc
Confidence            9988 9999999987         7999999999999999999999999999999984 357788765          12


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +.+++.++++.+++.|+|+|+++......  ..+....+...+++.+++||+++|. .|++.+++++++..||.|.+||+
T Consensus       248 ~~~e~~~~~~~l~~~gvd~i~vs~~~~~~--~~~~~~~~~~~~~~~~~~~vi~~G~-~t~~~ae~~l~~G~~DlV~~gR~  324 (363)
T d1vyra_         248 EEADALYLIEELAKRGIAYLHMSETDLAG--GKPYSEAFRQKVRERFHGVIIGAGA-YTAEKAEDLIGKGLIDAVAFGRD  324 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCBTTB--CCCCCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHTTSCSEEEESHH
T ss_pred             chHHHHHHHHHHHhcCCeeeecccCCccC--CccccHHHHHHHHHhcCceEEecCC-CCHHHHHHHHHCCCcceehhhHH
Confidence            34688999999999999999998543221  2344556677888889999998885 58999999996555999999999


Q ss_pred             hhcCcccccc
Q 020428          235 ALWNASIFSS  244 (326)
Q Consensus       235 ~l~~P~lf~~  244 (326)
                      ++.||.|.++
T Consensus       325 liadP~~~~K  334 (363)
T d1vyra_         325 YIANPDLVAR  334 (363)
T ss_dssp             HHHCTTHHHH
T ss_pred             HHHCccHHHH
Confidence            9999999887

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=1.7e-24  Score=199.32  Aligned_cols=240  Identities=18%  Similarity=0.218  Sum_probs=165.5

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccc--cccc---cc-----------cCcccccccCCc
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCE--RRVN---EY-----------IGSTDFVEKGTD   64 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~--~~~~---~~-----------~~~~~~~~~~~~   64 (326)
                      ++++||+++|+...-.+..+...+.+.|+|.+.+..++.++.....  +...   ..           .+...+.+....
T Consensus         8 l~l~nPi~~Asg~~~~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~~~~g~~   87 (312)
T d1gtea2           8 LKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAA   87 (312)
T ss_dssp             EEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCHH
T ss_pred             EEcCCCcEECCcCCCCCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccccccchh
Confidence            4689999999854445666667777889999999988654321111  1000   00           000000000000


Q ss_pred             ce---eeeccc-CCCCcEEE-EECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHH
Q 020428           65 SV---VFRTCH-QERNHVVF-QMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTML  138 (326)
Q Consensus        65 ~~---~~~~~~-~~~~p~~v-Ql~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v  138 (326)
                      .+   +..... -...++++ +..|.+++++.++++.+.. ++|.||||++||+.. ...+.|..+..+|+.+.++++++
T Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~-~~~~~~~~~~~~~~~~~~i~~~v  166 (312)
T d1gtea2          88 YWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGM-GERGMGLACGQDPELVRNICRWV  166 (312)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCC-C-----SBGGGCHHHHHHHHHHH
T ss_pred             hhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcc-cccccchhhhhhHHHHHHHHHHH
Confidence            00   000000 01124444 4468899999999998876 999999999999864 33457888899999999999999


Q ss_pred             hhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC----------------------CCCCcC----CHH
Q 020428          139 KRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD----------------------RPRDPA----KWG  192 (326)
Q Consensus       139 ~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~----------------------~~~~~~----~~~  192 (326)
                      ++.+++||++|++...+  +..++++.++++|++.|+++++....                      .++|++    .++
T Consensus       167 ~~~~~~pv~vKl~~~~~--~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~  244 (312)
T d1gtea2         167 RQAVQIPFFAKLTPNVT--DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALR  244 (312)
T ss_dssp             HHHCSSCEEEEECSCSS--CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHH
T ss_pred             hhccCCceeecccccch--hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHH
Confidence            99999999999986433  45688999999999999998763210                      112222    367


Q ss_pred             HHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC-cccccc
Q 020428          193 EIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN-ASIFSS  244 (326)
Q Consensus       193 ~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~-P~lf~~  244 (326)
                      .++++++.+ ++|||++|||.|++|+.+++ ..|||+|||||+++.+ |.++.+
T Consensus       245 ~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l-~aGA~~Vqv~ta~~~~G~~~i~~  297 (312)
T d1gtea2         245 AVTTIARALPGFPILATGGIDSAESGLQFL-HSGASVLQVCSAVQNQDFTVIQD  297 (312)
T ss_dssp             HHHHHHHHSTTCCEEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTSCTTHHHH
T ss_pred             HHHHHHHHcCCCcEEEEcCCCCHHHHHHHH-HcCCCeeEECHhhhccChHHHHH
Confidence            788888887 59999999999999999999 6999999999999975 666654

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=5.7e-25  Score=207.16  Aligned_cols=237  Identities=12%  Similarity=0.095  Sum_probs=173.9

Q ss_pred             CCCCCceEEccccC-------CCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCccc--ccccCCcceeeecc
Q 020428            1 MDYQNKLVLAPMVR-------VGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSVVFRTC   71 (326)
Q Consensus         1 l~l~~~iilAPM~g-------~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   71 (326)
                      +++|||+++|||..       .|+.......++.++|+++||.+.++......+   ..++.++  +++  ..+.+.+.+
T Consensus        17 ~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~---~~~~i~~d~~i~--~~k~l~~~v   91 (374)
T d1gwja_          17 LSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYV---YTPGIWTDAQEA--GWKGVVEAV   91 (374)
T ss_dssp             EEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBT---TCCBCSSHHHHH--HHHHHHHHH
T ss_pred             EEECCCeEEcccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEEeEEECCccCCCC---CCCccchhhhhh--hhhhHHHHH
Confidence            47899999999974       234455555555677999999887765433222   1122211  111  112245667


Q ss_pred             cCCCCcEEEEECCCC-------------------------------------------------------HHHHHHHHHH
Q 020428           72 HQERNHVVFQMGTSD-------------------------------------------------------AVRALTAAKM   96 (326)
Q Consensus        72 ~~~~~p~~vQl~g~~-------------------------------------------------------~~~~~~aa~~   96 (326)
                      |+.+..+++||++..                                                       .++|++||++
T Consensus        92 h~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~r  171 (374)
T d1gwja_          92 HAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYRQAAQR  171 (374)
T ss_dssp             HHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHH
T ss_pred             hccCcceEeeeeccCcccccccCCCCCceeccccccccCccccccccccccccCCCCCccccCHHHHHHHHHHHHHHHHH
Confidence            888889999995210                                                       3579999999


Q ss_pred             hhc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCC-----CC----h
Q 020428           97 VCK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLL-----KS----S  156 (326)
Q Consensus        97 ~~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g-----~~----~  156 (326)
                      +++ |||+||||++         +|..|.|+|.||+++.++.+++.||+++||++++ ..|.+++...     ..    .
T Consensus       172 A~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~  251 (374)
T d1gwja_         172 AKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPE  251 (374)
T ss_dssp             HHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHH
T ss_pred             HHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchH
Confidence            988 9999999987         7999999999999999999999999999999984 3455554431     11    2


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .....+++.++..|++.++++........ ......+.+.+++.+++||+++|+| +++.+++++++..||.|++||+++
T Consensus       252 ~~~~~~~~~ld~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~i  329 (374)
T d1gwja_         252 AMAFYLAGELDRRGLAYLHFNEPDWIGGD-ITYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFI  329 (374)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECSCBTTBC-CCCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             HHHHHhhccccccCceEEEeccCcccCCC-cchhHHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHH
Confidence            23566788899999999999855332111 1111234578899999999999999 799999999766699999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.|.++
T Consensus       330 adPd~~~K  337 (374)
T d1gwja_         330 ANPDLPER  337 (374)
T ss_dssp             HCTTHHHH
T ss_pred             HCccHHHH
Confidence            99999887

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=99.91  E-value=1.8e-24  Score=203.08  Aligned_cols=238  Identities=13%  Similarity=0.110  Sum_probs=168.8

Q ss_pred             CCCCCceEEccccCC-------CCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCcc--cccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVRV-------GTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g~-------t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   70 (326)
                      +++|||+++|||...       ++..+....++. |.++++||.+.++......+   ...+.+  ++++  ..+.+.+.
T Consensus        16 ~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~---~~~~l~~d~~i~--~~k~l~~~   90 (364)
T d1icpa_          16 FELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYK---DVPGIWTKEQVE--AWKPIVDA   90 (364)
T ss_dssp             EEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCST---TCCBCSSHHHHH--HHHHHHHH
T ss_pred             EEeCCccEecccCCCcCCCCCCCHHHHHHHHHHHhCceEEEEccEEECCcccCCC---CCceechhhhhh--hHHHHHHH
Confidence            468999999999742       334455554444 45899999777654322211   111111  1111  11224666


Q ss_pred             ccCCCCcEEEEECCCC--------------------------------------------------HHHHHHHHHHhhc-
Q 020428           71 CHQERNHVVFQMGTSD--------------------------------------------------AVRALTAAKMVCK-   99 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~~--------------------------------------------------~~~~~~aa~~~~~-   99 (326)
                      +|+.+.++++||++..                                                  .++|+++|+++++ 
T Consensus        91 ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~rA~~A  170 (364)
T d1icpa_          91 VHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEA  170 (364)
T ss_dssp             HHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHT
T ss_pred             hhcCCCceEEeeccCCcccccccccCCCCCccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence            7888889999995110                                                  3789999999988 


Q ss_pred             CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhccc-CcEEEEecCC-------CChHH--HH
Q 020428          100 DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD-VPVTCKIRLL-------KSSQD--TV  160 (326)
Q Consensus       100 ~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~-~pv~vK~r~g-------~~~~~--~~  160 (326)
                      |||+||||++         +|..|.|++.||+++.++.+++.||+++||++++ .+|.+++...       .+.++  .+
T Consensus       171 GfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l  250 (364)
T d1icpa_         171 GFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGL  250 (364)
T ss_dssp             TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHH
T ss_pred             CCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHH
Confidence            9999999986         7999999999999999999999999999999983 4677776541       22233  34


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ..++.+...+++.+++..............++....+++.++.||+++|++ |++++++++.+.+||.|++||+++.||+
T Consensus       251 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd  329 (364)
T d1icpa_         251 YMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPD  329 (364)
T ss_dssp             HHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred             HHHHHhhccceeeeeeecCcccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCcc
Confidence            555666667777777765443333222223444567888899999999986 7899999997778999999999999999


Q ss_pred             cccc
Q 020428          241 IFSS  244 (326)
Q Consensus       241 lf~~  244 (326)
                      |.++
T Consensus       330 ~~~k  333 (364)
T d1icpa_         330 LPKR  333 (364)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=99.90  E-value=4.1e-24  Score=202.84  Aligned_cols=239  Identities=13%  Similarity=0.127  Sum_probs=166.3

Q ss_pred             CCCCCceEEccccCCC----------CHHHHHHHHHc--CCCeEEeCceecccccccccccccccCccc--ccccCCcce
Q 020428            1 MDYQNKLVLAPMVRVG----------TLPFRLLAAQY--GADITYGEEIIDHKLLKCERRVNEYIGSTD--FVEKGTDSV   66 (326)
Q Consensus         1 l~l~~~iilAPM~g~t----------~~~fr~~~~~~--G~~l~~te~i~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~   66 (326)
                      +++||||++|||....          +...+...+++  |+|+++||.+.++......+   ...+.++  +++  ..+.
T Consensus        25 ~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~~~~---~~~~l~~d~~i~--~~k~   99 (399)
T d1oyaa_          25 NELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYD---NAPGVWSEEQMV--EWTK   99 (399)
T ss_dssp             EEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGCCCT---TSCBSSSHHHHH--HHHH
T ss_pred             EEecCccEECCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeccEEECcccCCCC---CCCccCCHHHHH--HHhH
Confidence            4689999999998532          22344444444  78999999877765432221   1122211  111  1122


Q ss_pred             eeecccCCCCcEEEEECCCC--------------------------------------------------HHHHHHHHHH
Q 020428           67 VFRTCHQERNHVVFQMGTSD--------------------------------------------------AVRALTAAKM   96 (326)
Q Consensus        67 ~~~~~~~~~~p~~vQl~g~~--------------------------------------------------~~~~~~aa~~   96 (326)
                      +.+.+|+.+..+++||++..                                                  .++|++||++
T Consensus       100 l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~r  179 (399)
T d1oyaa_         100 IFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKN  179 (399)
T ss_dssp             HHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhhccccCccccccccccccCccccccCCCCCCcccccCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence            45667888889999996420                                                  2578999999


Q ss_pred             hhc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC------CC----
Q 020428           97 VCK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL------KS----  155 (326)
Q Consensus        97 ~~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g------~~----  155 (326)
                      +++ |||+||||++         +|..|.|+|.||+++.++.+++.||+++||+++ +.||.+|+...      .+    
T Consensus       180 A~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~~~~~~~  259 (399)
T d1oyaa_         180 SIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAET  259 (399)
T ss_dssp             HHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGST
T ss_pred             HHHhCCceEehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcccccCCcccc
Confidence            988 9999999986         799999999999999999999999999999998 35899988751      11    


Q ss_pred             --hHHHHHHHHHHHHcC-----CcEEEEeecccCCCC--C--CcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          156 --SQDTVELARRIEKTG-----VSALAVHGRKVADRP--R--DPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       156 --~~~~~e~a~~l~~~G-----~d~i~vh~r~~~~~~--~--~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                        ..+..+++..++..+     .+.+++.........  .  +.........+++.+++|||++|+|.+.+++.+.+...
T Consensus       260 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PVi~~G~i~~~~~~~~~i~~~  339 (399)
T d1oyaa_         260 GIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKD  339 (399)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCEEEESSCTTCHHHHHHHTTS
T ss_pred             chHHHHHHHHHHHHHhccccccccceeeecccCCCccccccccccchhHHHHHHHHhCCCEEEECCCCChHHHHHHHHcC
Confidence              134566666666544     344544332211111  0  11111123456778899999999999877766666567


Q ss_pred             CCcEEEeccchhcCcccccc
Q 020428          225 GASSVMAARGALWNASIFSS  244 (326)
Q Consensus       225 Gad~VmiGr~~l~~P~lf~~  244 (326)
                      +||.|.+||+++.||.|.++
T Consensus       340 ~aDlV~~gR~liaDP~l~~K  359 (399)
T d1oyaa_         340 KRTLIGYGRFFISNPDLVDR  359 (399)
T ss_dssp             TTEEEECCHHHHHCTTHHHH
T ss_pred             CCeEhHHHHHHHHCccHHHH
Confidence            89999999999999999987

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=99.87  E-value=3.2e-22  Score=188.75  Aligned_cols=238  Identities=12%  Similarity=0.065  Sum_probs=161.8

Q ss_pred             CCCCCceEEccccC-------CCCHHHHHHHHHc-CCCeEEeCceecccccccccccccccCcc--cccccCCcceeeec
Q 020428            1 MDYQNKLVLAPMVR-------VGTLPFRLLAAQY-GADITYGEEIIDHKLLKCERRVNEYIGST--DFVEKGTDSVVFRT   70 (326)
Q Consensus         1 l~l~~~iilAPM~g-------~t~~~fr~~~~~~-G~~l~~te~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   70 (326)
                      +++|||+++|||..       .|+...+...++. |.++++||.+.++.-....+   ...+.+  ++++  ..+.+.+.
T Consensus        14 ~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~---~~~~~~~d~~i~--~~k~l~~~   88 (380)
T d1q45a_          14 FDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFP---HVPGIYSDEQVE--AWKQVVEA   88 (380)
T ss_dssp             EEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCST---TCCBCSSHHHHH--HHHHHHHH
T ss_pred             EEecCCeEEcccCCCcCCCCCCCHHHHHHHHHHHhCCEEEEEcceEECCCcCCCC---CCcccCCHHHHH--HHHHHHHH
Confidence            47899999999974       3344444444443 55899999876654322111   111111  1111  11224566


Q ss_pred             ccCCCCcEEEEECCC----------------------------------------------C-------HHHHHHHHHHh
Q 020428           71 CHQERNHVVFQMGTS----------------------------------------------D-------AVRALTAAKMV   97 (326)
Q Consensus        71 ~~~~~~p~~vQl~g~----------------------------------------------~-------~~~~~~aa~~~   97 (326)
                      .|+.+.++++||+..                                              +       .++|+++|+++
T Consensus        89 vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~aA~~A  168 (380)
T d1q45a_          89 VHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNA  168 (380)
T ss_dssp             HHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHHHHHHHHHH
T ss_pred             HHhcCcceEEEeeeCCccccccccccCCCCcccccCccccCCceeecCCccccCCCCCeeCCHHHHHHHHHHHHHHHHHH
Confidence            778888999999520                                              0       36899999999


Q ss_pred             hc-CCCEEEEccC---------CCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEecC------CC--ChH
Q 020428           98 CK-DVAAIDINMG---------CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKIRL------LK--SSQ  157 (326)
Q Consensus        98 ~~-~~d~idlN~g---------cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~r~------g~--~~~  157 (326)
                      ++ |||+||||++         +|..|.|+|.||+++.++.+++.||+++||++++  .++..+...      +.  ..+
T Consensus       169 ~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~  248 (380)
T d1q45a_         169 IRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLS  248 (380)
T ss_dssp             HHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHH
T ss_pred             HHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeecccccccccccchh
Confidence            88 9999999986         7999999999999999999999999999999984  333333321      11  112


Q ss_pred             HHHHH------HHHHHHcCCcEEEEeecccCC------CCCCcCC--HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          158 DTVEL------ARRIEKTGVSALAVHGRKVAD------RPRDPAK--WGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       158 ~~~e~------a~~l~~~G~d~i~vh~r~~~~------~~~~~~~--~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      ...++      ...+...+++++.+.......      ....+..  ....+.+++.+++||+++|++ +++.+++++++
T Consensus       249 ~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~~ae~~l~~  327 (380)
T d1q45a_         249 LGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKELGMQAVQQ  327 (380)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-CHHHHHHHHHT
T ss_pred             hhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CHHHHHHHHHc
Confidence            22333      333345788999886432211      1111212  234667788899999999998 69999999976


Q ss_pred             cCCcEEEeccchhcCcccccc
Q 020428          224 AGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ..||.|.+||+++.||+|.++
T Consensus       328 G~~DlV~~gR~liaDPdlv~K  348 (380)
T d1q45a_         328 GDADLVSYGRLFIANPDLVSR  348 (380)
T ss_dssp             TSCSEEEESHHHHHCTTHHHH
T ss_pred             CCccchhhhHHHHHCccHHHH
Confidence            669999999999999999987

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=99.85  E-value=1.4e-20  Score=172.70  Aligned_cols=238  Identities=14%  Similarity=0.086  Sum_probs=165.7

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccc-ccccc----ccccCcccccccCCcce---eeecc-
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLK-CERRV----NEYIGSTDFVEKGTDSV---VFRTC-   71 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~----~~~~~~~~~~~~~~~~~---~~~~~-   71 (326)
                      ++++||+++|....-.+......+...|+|.+.+..++.++-.. ..+..    ........+-+...+.+   +.+.. 
T Consensus         9 l~l~nPi~~aag~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~~~~~~~~~~~   88 (311)
T d1juba_           9 AKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQK   88 (311)
T ss_dssp             EEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHH
T ss_pred             EecCCCCEECCCCCCCCHHHHHHHHHCCCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCchhHHHHHHHHHhhh
Confidence            46899999996544456766666678899999888777654211 11100    00011111111110000   00111 


Q ss_pred             -cCCCCcEEEEECCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           72 -HQERNHVVFQMGTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        72 -~~~~~p~~vQl~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                       ...+.|+++++.+.+.+++...++.+..  ++|.+|||++||+..     .+..+..+++.+.++++++++.++.|+.+
T Consensus        89 ~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~-----~~~~~~~~~~~~~~~~~~v~~~~~~pv~v  163 (311)
T d1juba_          89 ENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVP-----GEPQLAYDFEATEKLLKEVFTFFTKPLGV  163 (311)
T ss_dssp             HTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSS-----SCCCGGGCHHHHHHHHHHHTTTCCSCEEE
T ss_pred             hcccCCCceeeccccccchhHHHHHHHhhccccceeeecccccccc-----ccccccccHHHHHHHHHHhhcccccceee
Confidence             1234589999999999988888877765  478999999999863     22345678999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcCCcEEEEeeccc---------C----------CCCCCc----CCHHHHHHHHHhc--CC
Q 020428          149 KIRLLKSSQDTVELARRIEKTGVSALAVHGRKV---------A----------DRPRDP----AKWGEIADIVAAL--SI  203 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~---------~----------~~~~~~----~~~~~i~~i~~~~--~i  203 (326)
                      |+....+..+...+++.+.+.|++.++..+...         .          +.++++    .....+.++++.+  ++
T Consensus       164 Kl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~  243 (311)
T d1juba_         164 KLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEI  243 (311)
T ss_dssp             EECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTS
T ss_pred             cccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCe
Confidence            999877767777889999999999998653211         0          111222    2345667777765  59


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      |||++|||+|++|+.+++ ..|||.|+++++++. .|+++.+
T Consensus       244 ~Iig~GGI~s~~Da~~~i-~aGA~~Vql~tal~~~Gp~~i~~  284 (311)
T d1juba_         244 QIIGTGGIETGQDAFEHL-LCGATMLQIGTALHKEGPAIFDR  284 (311)
T ss_dssp             EEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHHCTHHHHH
T ss_pred             eEEecCCcCCHHHHHHHH-HcCCCceeeeHhhHhcChHHHHH
Confidence            999999999999999999 799999999999875 5887665

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.80  E-value=9.1e-19  Score=160.55  Aligned_cols=238  Identities=14%  Similarity=0.065  Sum_probs=154.2

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccc-cccccc----ccccCcccccccCCcc---eeeeccc
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLL-KCERRV----NEYIGSTDFVEKGTDS---VVFRTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~-~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~   72 (326)
                      ++++||+++|.=.--++...-..+...|+|.+.+..+..++-. ...+..    ....+...|-+...+.   .+.+...
T Consensus         9 l~l~nPi~~aaG~~~~~~~~~~~~~~~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~G~~~~~~~l~~~~~   88 (312)
T d2b4ga1           9 HEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYLSYAAQTHD   88 (312)
T ss_dssp             EEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCC
T ss_pred             EECCCCcEeCcCCCCCCHHHHHHHHHcCCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcchHHHHHHHHHHhhh
Confidence            3689999998411123455556667779998888777655421 111110    0011111111111110   0111122


Q ss_pred             CCCCcEEEEECCCCHHHHHHHHHHh----hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE
Q 020428           73 QERNHVVFQMGTSDAVRALTAAKMV----CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC  148 (326)
Q Consensus        73 ~~~~p~~vQl~g~~~~~~~~aa~~~----~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v  148 (326)
                      ..+.|+++++.|.+.+++.+.++.+    ..++|.||||.+||+..     .+..+-.+++.+.++++.+++.+++|+.+
T Consensus        89 ~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~pi~v  163 (312)
T d2b4ga1          89 YSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVP-----GKPQVGYDFDTTRTYLQKVSEAYGLPFGV  163 (312)
T ss_dssp             TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST-----TCCCGGGCHHHHHHHHHHHHHHHCSCEEE
T ss_pred             ccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcC-----cchhhhccHHHHHHHHHHhhcccccccee
Confidence            3346899999999887776666543    34789999999999863     13345678999999999999999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHcC-CcEEEEeeccc-------------------CCCCCCcC----CHHHHHHHHHhc-CC
Q 020428          149 KIRLLKSSQDTVELARRIEKTG-VSALAVHGRKV-------------------ADRPRDPA----KWGEIADIVAAL-SI  203 (326)
Q Consensus       149 K~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~~-------------------~~~~~~~~----~~~~i~~i~~~~-~i  203 (326)
                      |+....+.......+..+.+.+ ++.+.......                   .+.++|++    ..+.+..+++.+ ..
T Consensus       164 Kl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~~~  243 (312)
T d2b4ga1         164 KMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDK  243 (312)
T ss_dssp             EECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCTTS
T ss_pred             ccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcCCC
Confidence            9987655555555556665554 44443321100                   01223333    356677777766 57


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc-Ccccccc
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSVMAARGALW-NASIFSS  244 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~-~P~lf~~  244 (326)
                      |||++|||.|++|+.+++ ..||+.||++++++. +|.++.+
T Consensus       244 ~Iig~GGI~s~~Da~e~i-~aGAs~Vqv~Tal~~~Gp~~i~~  284 (312)
T d2b4ga1         244 LVFGCGGVYSGEEAFLHI-LAGASMVQVGTALHDEGPIIFAR  284 (312)
T ss_dssp             EEEEESSCCSHHHHHHHH-HHTEEEEEESHHHHHHCTTHHHH
T ss_pred             ceeecCCcCCHHHHHHHH-HcCCChheeehhhHhcCcHHHHH
Confidence            899999999999999999 699999999999875 6988876

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.78  E-value=7.4e-18  Score=159.80  Aligned_cols=235  Identities=16%  Similarity=0.130  Sum_probs=156.3

Q ss_pred             CCCCCceEEccccCCC-CHHHHHHHHHcCCCeEEeCceecccccc-cccccc------cccCcccccccCCcce---ee-
Q 020428            1 MDYQNKLVLAPMVRVG-TLPFRLLAAQYGADITYGEEIIDHKLLK-CERRVN------EYIGSTDFVEKGTDSV---VF-   68 (326)
Q Consensus         1 l~l~~~iilAPM~g~t-~~~fr~~~~~~G~~l~~te~i~~~~l~~-~~~~~~------~~~~~~~~~~~~~~~~---~~-   68 (326)
                      ++++||+.+|.  |.. +...-..+.+.|+|.+.+..++.++-.. ..+...      ..+....|-+......   +. 
T Consensus        58 l~f~NPiglAA--G~dk~~~~i~~~~~lGfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~~~~l~~  135 (409)
T d1tv5a1          58 LDFINPFGVAA--GFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLIL  135 (409)
T ss_dssp             EEESSSEEECT--TTTTTCSSHHHHHTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHH
T ss_pred             eecCCcCEecc--ccCCCHHHHHHHHhcCCCeEEeeeeeeccccCCCCccccccccccccccccCCCcccHHHHHHHHHH
Confidence            46899999994  532 2333344556699999999887765221 111100      0000000100000000   00 


Q ss_pred             -----e-cccCCCCcEEEEECCCC----H-HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHH
Q 020428           69 -----R-TCHQERNHVVFQMGTSD----A-VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTM  137 (326)
Q Consensus        69 -----~-~~~~~~~p~~vQl~g~~----~-~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~  137 (326)
                           . ..+....++.+++..+.    . +++..+.+....++|.++||.+||+..      |...+.+++.+.+++++
T Consensus       136 ~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~------glr~~~~~~~L~~ll~~  209 (409)
T d1tv5a1         136 FRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILS  209 (409)
T ss_dssp             HHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHH
T ss_pred             HhhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhhcccceeecccccccc------ccccccCHHHHHHHHHH
Confidence                 0 00111234666665432    2 344444555555889999999999873      45556789999999999


Q ss_pred             Hhhcc---------------------------------------------------cCcEEEEecCCCChHHHHHHHHHH
Q 020428          138 LKRNL---------------------------------------------------DVPVTCKIRLLKSSQDTVELARRI  166 (326)
Q Consensus       138 v~~~~---------------------------------------------------~~pv~vK~r~g~~~~~~~e~a~~l  166 (326)
                      +++..                                                   ..||.+|+....+.++..++++.+
T Consensus       210 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~  289 (409)
T d1tv5a1         210 VKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVL  289 (409)
T ss_dssp             HHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccccccccccccchhhhhhccccccccccccccchhhhhhccccccCCceEEEeCCCCCchhhHHHHHHH
Confidence            97642                                                   238999999877888899999999


Q ss_pred             HHcCCcEEEEeecccCC-----------CCCC----cCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          167 EKTGVSALAVHGRKVAD-----------RPRD----PAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~~-----------~~~~----~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      .+.|+|++++.+.+...           ..+|    +.....++++++.+  ++|||++|||.|++|+.+++ ..||+.|
T Consensus       290 ~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i-~AGAs~V  368 (409)
T d1tv5a1         290 LETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKI-EAGASVC  368 (409)
T ss_dssp             HHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHH-HTTEEEE
T ss_pred             HhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHH-HcCCCHH
Confidence            99999999998665431           1122    22466788888877  49999999999999999999 6999999


Q ss_pred             Eeccchh-cCcccccc
Q 020428          230 MAARGAL-WNASIFSS  244 (326)
Q Consensus       230 miGr~~l-~~P~lf~~  244 (326)
                      ||++|++ .+|.++.+
T Consensus       369 Qv~T~li~~Gp~~v~~  384 (409)
T d1tv5a1         369 QLYSCLVFNGMKSAVQ  384 (409)
T ss_dssp             EESHHHHHHGGGHHHH
T ss_pred             hhhhHHHhcChHHHHH
Confidence            9999985 57999886

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-18  Score=161.88  Aligned_cols=241  Identities=17%  Similarity=0.151  Sum_probs=150.0

Q ss_pred             CCCCCceEEccccCC-CCHHHHHHHHHcCCCeEEeCceeccccccc-cccccc------ccCcccccccCCccee--e--
Q 020428            1 MDYQNKLVLAPMVRV-GTLPFRLLAAQYGADITYGEEIIDHKLLKC-ERRVNE------YIGSTDFVEKGTDSVV--F--   68 (326)
Q Consensus         1 l~l~~~iilAPM~g~-t~~~fr~~~~~~G~~l~~te~i~~~~l~~~-~~~~~~------~~~~~~~~~~~~~~~~--~--   68 (326)
                      ++++||+++|.  |. ++...-..+.+.|+|.+.+..++.++-... .+....      ......+-+.....+.  +  
T Consensus        57 l~~~nPi~lAs--G~~~~~~~i~~~~~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~  134 (367)
T d1d3ga_          57 HKFRNPVGIAA--GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRA  134 (367)
T ss_dssp             EEESSSEEECT--TSSTTSSSHHHHHHHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHT
T ss_pred             EecCCCcEeCc--CCCCCHHHHHHHhhcCCcEEeeccccccccccCCchhhhhhccccccccccCcCCcchHHHHHHHHH
Confidence            46899999985  32 233334455566999999998876653211 111000      0000111110000000  0  


Q ss_pred             -----ecccCCCCcEEEEECCCC-----HHHHHHHHHHhhcCCCEEEEccCCCcccccccccc-ccccCChHHHHHHHHH
Q 020428           69 -----RTCHQERNHVVFQMGTSD-----AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMG-AALLSKPELIHDILTM  137 (326)
Q Consensus        69 -----~~~~~~~~p~~vQl~g~~-----~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G-~~l~~~p~~~~~iv~~  137 (326)
                           ........|++++++++.     .+++..+.+....++|.+++|++||+...-..... ..+........+....
T Consensus       135 ~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (367)
T d1d3ga_         135 RQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDG  214 (367)
T ss_dssp             THHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHT
T ss_pred             HhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhh
Confidence                 011123458999998753     35666666666669999999999998742111111 0111111122222222


Q ss_pred             HhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCC-------------CCCC----cCCHHHHHHHHHh
Q 020428          138 LKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVAD-------------RPRD----PAKWGEIADIVAA  200 (326)
Q Consensus       138 v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~-------------~~~~----~~~~~~i~~i~~~  200 (326)
                      ++...++|+.+|+....+..+..++++.+.++|+++|++.+.+...             .++|    +.....++.+++.
T Consensus       215 ~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~  294 (367)
T d1d3ga_         215 LRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYAL  294 (367)
T ss_dssp             SCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHH
T ss_pred             cccccCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHH
Confidence            3333478999999987777889999999999999999986554321             1112    2235566777765


Q ss_pred             c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch-hcCcccccc
Q 020428          201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA-LWNASIFSS  244 (326)
Q Consensus       201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~-l~~P~lf~~  244 (326)
                      +  ++|||++|||.|++|+.+++ ..||+.||||+++ +.+|.++.+
T Consensus       295 ~~~~ipIig~GGI~s~~Da~e~i-~aGAs~VQi~Ta~~~~Gp~ii~~  340 (367)
T d1d3ga_         295 TQGRVPIIGVGGVSSGQDALEKI-RAGASLVQLYTALTFWGPPVVGK  340 (367)
T ss_dssp             TTTCSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCTHHHHH
T ss_pred             hCCCccEEEECCCCCHHHHHHHH-HcCCCHHHhhHHHHhcCcHHHHH
Confidence            5  69999999999999999999 7999999999997 579999876

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.4e-18  Score=158.30  Aligned_cols=236  Identities=17%  Similarity=0.171  Sum_probs=154.6

Q ss_pred             CCCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceeccccccc-ccccc------cccCcccccccCCcceee-eccc
Q 020428            1 MDYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKC-ERRVN------EYIGSTDFVEKGTDSVVF-RTCH   72 (326)
Q Consensus         1 l~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~-~~~~~------~~~~~~~~~~~~~~~~~~-~~~~   72 (326)
                      ++++||+++|.=.+ ++...-..+...|+|.+.+..++.+.-... .+...      ..++...+-+.....+.. ....
T Consensus        52 l~~~NPiglAsG~~-~~~e~i~~~~~~G~G~vv~ktit~~p~~gnp~pr~~~~~~~~~~iN~~gl~n~g~~~~~~~~~~~  130 (336)
T d1f76a_          52 LTFKNPLGLAAGLD-KDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKA  130 (336)
T ss_dssp             EEESSSEEECTTSS-TTCCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHHHHHC
T ss_pred             eecCCCCEeCcccC-CChHHHHHHHhhcccccccccccccccCCCCCcccccccccccchhhccCccccHHHHHHHhhcc
Confidence            46899999985222 233333456677999999988876553211 11110      000011111111000000 0011


Q ss_pred             CCCCcEEEEECCCC-------HHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHH-------
Q 020428           73 QERNHVVFQMGTSD-------AVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTML-------  138 (326)
Q Consensus        73 ~~~~p~~vQl~g~~-------~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v-------  138 (326)
                      ....|++++++++.       .+++..+.+.+..++|.+|||++||+..      |...+.+.+.+.+.+.++       
T Consensus       131 ~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~~------g~~~~~~~~~l~~~~~~~~~~~~~~  204 (336)
T d1f76a_         131 HYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQNDL  204 (336)
T ss_dssp             CCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhhh------cccccccchhhccchhhhhhhhhhh
Confidence            23458999998764       4567777777777899999999999863      233334555554444433       


Q ss_pred             --hhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC-------------CCCCCc----CCHHHHHHHHH
Q 020428          139 --KRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA-------------DRPRDP----AKWGEIADIVA  199 (326)
Q Consensus       139 --~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-------------~~~~~~----~~~~~i~~i~~  199 (326)
                        +...++||.+|+....+..+..+.++.+.+.|++.++....+..             +..+|+    ...+.++++++
T Consensus       205 ~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~  284 (336)
T d1f76a_         205 QAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSL  284 (336)
T ss_dssp             HHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHH
T ss_pred             hhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence              23347899999998777788999999999999999997644321             111222    23566778887


Q ss_pred             hc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch-hcCcccccc
Q 020428          200 AL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA-LWNASIFSS  244 (326)
Q Consensus       200 ~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~-l~~P~lf~~  244 (326)
                      .+  ++|||++|||.|++|+.+++ ..||++||||+++ +.+|.++.+
T Consensus       285 ~~~~~ipIIG~GGI~s~~Da~e~i-~aGAsaVQv~Tal~~~Gp~ii~~  331 (336)
T d1f76a_         285 ELNGRLPIIGVGGIDSVIAAREKI-AAGASLVQIYSGFIFKGPPLIKE  331 (336)
T ss_dssp             HHTTSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCHHHHHH
T ss_pred             HcCCCCeEEEECCCCCHHHHHHHH-HcCCcHHHHHHHHHhcChHHHHH
Confidence            76  79999999999999999999 7999999999997 469998875

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=7.9e-12  Score=114.32  Aligned_cols=206  Identities=19%  Similarity=0.209  Sum_probs=120.0

Q ss_pred             CCCCceEEccccCCCC-------HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCC
Q 020428            2 DYQNKLVLAPMVRVGT-------LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE   74 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~-------~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (326)
                      +++.|++.|||.+.+.       ..+...+.+.|.....+++.+... ......      .  +      . .... ...
T Consensus        33 ~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~-~~~~~~------~--~------~-~~~~-~~~   95 (329)
T d1p0ka_          33 SSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALK-DPSERL------S--Y------E-IVRK-ENP   95 (329)
T ss_dssp             EESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTT-CHHHHH------H--H------H-HHHH-HCS
T ss_pred             EcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccch-hHHHHh------h--h------h-hHhh-hCC
Confidence            4678999999976552       234455666676555443322111 000000      0  0      0 0000 011


Q ss_pred             CCcEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC
Q 020428           75 RNHVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL  152 (326)
Q Consensus        75 ~~p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~  152 (326)
                      ..+...++... ..+...++   +.. +++.+.+|..||.......+.     .+.....+.++.+++.++.|+.+|.-.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~---~~~~g~~ai~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~i~~~~~~~vivk~v~  167 (329)
T d1p0ka_          96 NGLIFANLGSEATAAQAKEA---VEMIGANALQIHLNVIQEIVMPEGD-----RSFSGALKRIEQICSRVSVPVIVKEVG  167 (329)
T ss_dssp             SSCEEEEEETTCCHHHHHHH---HHHTTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSSCEEEEEES
T ss_pred             cceEEEeeccchhHHHHHHH---HHHcCCCEEEecccccchhhhcccc-----ccccchHHHHHHHHHHcCCCcEEEecC
Confidence            12345555433 34444333   333 889999999999764433221     223345566788888889999998753


Q ss_pred             C-CChHHHHHHHHHHHHcCCcEEEEeecccCCC----------------CCCcCCHHHHHHHHHhc-CCcEEEeCCCCCH
Q 020428          153 L-KSSQDTVELARRIEKTGVSALAVHGRKVADR----------------PRDPAKWGEIADIVAAL-SIPVIANGDVFEY  214 (326)
Q Consensus       153 g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~----------------~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~  214 (326)
                      . .+    .+.++.+.++|+|+|.|.+....+.                ..+.+....+.++.... ++|||+.|||++.
T Consensus       168 ~~~~----~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g  243 (329)
T d1p0ka_         168 FGMS----KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDA  243 (329)
T ss_dssp             SCCC----HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSH
T ss_pred             Ccch----HHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccH
Confidence            2 33    3456677889999999965422111                01223345555555544 7999999999999


Q ss_pred             HHHHHHHHhcCCcEEEeccchhc
Q 020428          215 DDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       215 ~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .|+.+++ ..|||+||+||+++.
T Consensus       244 ~Dv~KAl-alGAdaV~iGr~~l~  265 (329)
T d1p0ka_         244 LDVAKAI-ALGASCTGMAGHFLK  265 (329)
T ss_dssp             HHHHHHH-HTTCSEEEECHHHHH
T ss_pred             HHHHHHH-HcCCCchhccHHHHH
Confidence            9999999 699999999997653

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=6e-12  Score=115.09  Aligned_cols=191  Identities=20%  Similarity=0.184  Sum_probs=125.6

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      .++-|||.|||..+++..+.....++|.--++.-..+++.....                      .+..++.+.++.+.
T Consensus        35 ~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~~~e~~~~~----------------------i~~vk~~~~~v~~~   92 (330)
T d1vrda1          35 RINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQ----------------------VSIVKKTRLLVGAA   92 (330)
T ss_dssp             EESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHH----------------------HHHHHTCCBCCEEE
T ss_pred             ccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecccchhhhHHH----------------------HHHHhhhccEEEEE
Confidence            46779999999999999999999998763333322222221110                      01112222345555


Q ss_pred             ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHH
Q 020428           82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~  160 (326)
                      + |.+++.+.++..+++.++|.|-|..+-.               +++...+.++.+++.. ++||.+.-=      .+.
T Consensus        93 v-gv~~~~~e~~~~li~agvd~ivId~A~G---------------~~~~~~~~ik~ik~~~~~~~viaGnV------~t~  150 (330)
T d1vrda1          93 V-GTSPETMERVEKLVKAGVDVIVIDTAHG---------------HSRRVIETLEMIKADYPDLPVVAGNV------ATP  150 (330)
T ss_dssp             E-CSSTTHHHHHHHHHHTTCSEEEECCSCC---------------SSHHHHHHHHHHHHHCTTSCEEEEEE------CSH
T ss_pred             E-ecCHHHHHHHHHHHHCCCCEEEEecCCC---------------CchhHHHHHHHHHHhCCCCCEEeech------hHH
Confidence            5 3455666666666666888765543211               3455667788887654 678777542      335


Q ss_pred             HHHHHHHHcCCcEEEEeecccC-------CCCCCcCCHHHHH---HHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          161 ELARRIEKTGVSALAVHGRKVA-------DRPRDPAKWGEIA---DIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~-------~~~~~~~~~~~i~---~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +.++.|.++|+|.|.| |....       ....+.+.+..+.   ++++.+++|||+.|||.+..|+.+++ ..|||+||
T Consensus       151 ~~a~~l~~~GaD~v~V-Gig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAl-a~GAd~Vm  228 (330)
T d1vrda1         151 EGTEALIKAGADAVKV-GVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL-AAGAESVM  228 (330)
T ss_dssp             HHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH-HTTCSEEE
T ss_pred             HHHHHHHHcCCCEEee-ccccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheee-eccCceee
Confidence            6688899999999988 33211       1112334455544   44556789999999999999999999 69999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +|+-|...
T Consensus       229 ~Gs~fa~~  236 (330)
T d1vrda1         229 VGSIFAGT  236 (330)
T ss_dssp             ESHHHHTB
T ss_pred             ecchheee
Confidence            99998864

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=3.1e-11  Score=111.35  Aligned_cols=206  Identities=17%  Similarity=0.132  Sum_probs=137.0

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|++++||.+.+      +......+.++|.....+.+-+...  .                    . +..  ...+
T Consensus        67 ~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~--e--------------------~-v~~--~~~~  121 (349)
T d1tb3a1          67 EISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSL--E--------------------D-IVA--AAPE  121 (349)
T ss_dssp             EESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSCH--H--------------------H-HHH--HSTT
T ss_pred             CccceEEEcchhcccccccchhhHHHHhhhhcccceeecccccccc--h--------------------h-hhh--hccC
Confidence            457799999999854      3567778888887666543221110  0                    0 001  1122


Q ss_pred             CcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCcccccccc----c----------------------cccccCC
Q 020428           76 NHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGG----M----------------------GAALLSK  127 (326)
Q Consensus        76 ~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~----~----------------------G~~l~~~  127 (326)
                      .+..+|+.. .+.+...+..+++.. |+..+-+....|....+...    .                      ...-..+
T Consensus       122 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (349)
T d1tb3a1         122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPK  201 (349)
T ss_dssp             CCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------
T ss_pred             CCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccC
Confidence            468889964 444555566666655 88777766655542211000    0                      0000011


Q ss_pred             hHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcE
Q 020428          128 PELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPV  205 (326)
Q Consensus       128 p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPV  205 (326)
                      +...-+-++.+++.++.|+.+|--..      .+-+..+.++|+|++.+.+....+....+...+.+.++++.+  ++||
T Consensus       202 ~~~~~~~i~~l~~~~~~pii~Kgi~~------~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~i  275 (349)
T d1tb3a1         202 ASFCWNDLSLLQSITRLPIILKGILT------KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEV  275 (349)
T ss_dssp             CCCCHHHHHHHHTTCCSCEEEEEECS------HHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEE
T ss_pred             CCCCHHHHHHHHHhcCCCcccchhhh------hHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeE
Confidence            11223567788888899999998642      244777889999999998776666666777788889988876  6899


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      |+.|||++..|+.+.+ ..|||+|+|||++|.-.
T Consensus       276 iadGGIR~G~Dv~KAL-ALGA~~V~igrp~L~~l  308 (349)
T d1tb3a1         276 YMDGGVRTGTDVLKAL-ALGARCIFLGRPILWGL  308 (349)
T ss_dssp             EEESSCCSHHHHHHHH-HTTCSCEEESHHHHHHH
T ss_pred             EeccCcCcHHHHHHHH-HcCCCEEEEChHHHHHH
Confidence            9999999999999999 69999999999988543

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.25  E-value=1.8e-11  Score=105.06  Aligned_cols=126  Identities=13%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             HhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEE
Q 020428           96 MVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALA  175 (326)
Q Consensus        96 ~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~  175 (326)
                      .+..|+|.|.++..++...             .+.+.++++.+++....++.....      .+.+.+..+.+.|+|+|.
T Consensus        84 ~~~agad~v~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~------~t~~~a~~~~~~g~d~i~  144 (222)
T d1y0ea_          84 LIESQCEVIALDATLQQRP-------------KETLDELVSYIRTHAPNVEIMADI------ATVEEAKNAARLGFDYIG  144 (222)
T ss_dssp             HHHHTCSEEEEECSCSCCS-------------SSCHHHHHHHHHHHCTTSEEEEEC------SSHHHHHHHHHTTCSEEE
T ss_pred             HHHcCCCEEEeeccccccc-------------cchHHHHHHHHHHhCCceEEeecC------CCHHHHHHHHHcCCCeEE
Confidence            3334899999987654321             123455666666654333333221      234567788999999998


Q ss_pred             EeecccCC----CCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccc
Q 020428          176 VHGRKVAD----RPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIF  242 (326)
Q Consensus       176 vh~r~~~~----~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf  242 (326)
                      ++++....    ......+++.+.++++.+++|||++|||.|++|+.+++ +.|||+||+||++ .+|+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~-~~GAdgV~iGsAi-~rp~~~  213 (222)
T d1y0ea_         145 TTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVM-DLGVHCSVVGGAI-TRPKEI  213 (222)
T ss_dssp             CTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHH-HCHHHH
T ss_pred             EeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEEchhh-cCHHHH
Confidence            75443322    22234568899999999999999999999999999999 5999999999975 466543

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.24  E-value=1.8e-10  Score=106.88  Aligned_cols=203  Identities=16%  Similarity=0.133  Sum_probs=125.5

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      .++-|||.|||.++++..+.....++|. +.+-. +.+++......+......      . .+   ......+.+..+..
T Consensus        44 ~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr-~~~~e~~~~ev~~v~~~~------~-~p---~~~~~~~~~l~v~a  112 (378)
T d1jr1a1          44 TLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHH-NCTPEFQANEVRKVKKYE------Q-YP---LASKDAKKQLLCGA  112 (378)
T ss_dssp             EESSCEEECCCTTTCSHHHHHHHHHHTCEEEECC-SSCHHHHHHHHHHHHTSC------C-CT---TCCBCTTSCBCCEE
T ss_pred             cCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEcC-CCCHHHHHHHHheehhhh------h-Cc---ccccccccCEEEEE
Confidence            4677999999999999999988888875 55532 333332221111110000      0 00   00000111223444


Q ss_pred             EECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHH
Q 020428           81 QMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDT  159 (326)
Q Consensus        81 Ql~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~  159 (326)
                      -++ ..+++...+...+..+++.|-+...-++.               +.+.+.++.+++.. ++|+.+--=      .+
T Consensus       113 avg-~~~~~~~~~~~l~~agv~vi~id~a~g~~---------------~~~~~~i~~ik~~~~~~~iIaGnV------aT  170 (378)
T d1jr1a1         113 AIG-THEDDKYRLDLLALAGVDVVVLDSSQGNS---------------IFQINMIKYMKEKYPNLQVIGGNV------VT  170 (378)
T ss_dssp             EEC-SSTHHHHHHHHHHHHTCCEEEECCSSCCS---------------HHHHHHHHHHHHHSTTCEEEEEEE------CS
T ss_pred             Eec-cCHHHHHHHHHHHhhccceEeeeccCccc---------------hhhHHHHHHHHHHCCCCceeeccc------cc
Confidence            443 33444444444454589988887654433               45666777777665 566655331      34


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCC------CCCCcCCHHHHHH---HHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          160 VELARRIEKTGVSALAVHGRKVAD------RPRDPAKWGEIAD---IVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~------~~~~~~~~~~i~~---i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .+.++.|.++|+|.|.|-......      ...+.+.+..+..   .++..++|||+.|||.+..|+.++| ..|||+||
T Consensus       171 ~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAl-a~GAd~VM  249 (378)
T d1jr1a1         171 AAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKAL-ALGASTVM  249 (378)
T ss_dssp             HHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEE
T ss_pred             HHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEE-Eeecceee
Confidence            566888999999999885442221      1123445555544   4456789999999999999999999 69999999


Q ss_pred             eccchhcC
Q 020428          231 AARGALWN  238 (326)
Q Consensus       231 iGr~~l~~  238 (326)
                      +|+.+...
T Consensus       250 mGs~fAgt  257 (378)
T d1jr1a1         250 MGSLLAAT  257 (378)
T ss_dssp             ESTTTTTB
T ss_pred             ecceeeee
Confidence            99998863

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=3.2e-11  Score=108.97  Aligned_cols=205  Identities=17%  Similarity=0.155  Sum_probs=117.2

Q ss_pred             CCCCceEEccccCCCCHH------HHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVGTLP------FRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~------fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++++|+++|||.+.+...      ....+.+.|...+.++..... . .      .. ....|.        + ......
T Consensus        34 ~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~-~-~------~~-~~~~~~--------~-~~~~~~   95 (310)
T d1vcfa1          34 TLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILL-E-R------PE-ALRSFR--------V-RKVAPK   95 (310)
T ss_dssp             EESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHH-H-C------TT-THHHHC--------C-TTTCSS
T ss_pred             EcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcc-h-h------hh-hhcccc--------h-HHhcCC
Confidence            468999999998766432      334566667654433321110 0 0      00 000000        0 011223


Q ss_pred             CcEEEEECCCCH-----HHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428           76 NHVVFQMGTSDA-----VRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~g~~~-----~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      .++.+|+....+     +...++.+..  +++.+.+|..||........   .   ......+....+ ...+.|+.+|.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~-~~~~~p~~~k~  166 (310)
T d1vcfa1          96 ALLIANLGLAQLRRYGRDDLLRLVEML--EADALAFHVNPLQEAVQRGD---T---DFRGLVERLAEL-LPLPFPVMVKE  166 (310)
T ss_dssp             SCEEEEEEGGGGGTCCHHHHHHHHHHH--TCSEEEEECCHHHHHHTTSC---C---CCTTHHHHHHHH-CSCSSCEEEEC
T ss_pred             cceeeeecccchhhhhHHHHHHHHHhc--CCCeeccccccchhhhcccc---c---ccccHHHHHHHH-hhccCCceeee
Confidence            467888865432     3333333222  67889999888764332211   1   111122333333 34588999997


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCC------------------CCCCcCCHHHHHHHHHhc-CCcEEEeCCC
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVAD------------------RPRDPAKWGEIADIVAAL-SIPVIANGDV  211 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~------------------~~~~~~~~~~i~~i~~~~-~iPVi~nGgI  211 (326)
                      -....   ..+.++.+.++|+|+|.|.++...+                  ...+.+..+.+.++++.. ++|||+.|||
T Consensus       167 v~~~~---~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGI  243 (310)
T d1vcfa1         167 VGHGL---SREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGV  243 (310)
T ss_dssp             SSSCC---CHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSC
T ss_pred             ecCcc---cHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCC
Confidence            54321   2456788899999999987653311                  001122345556665543 7999999999


Q ss_pred             CCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          212 FEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       212 ~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++..|+.+++ ..|||+||+||+++.
T Consensus       244 r~g~Dv~KAL-alGAdaV~iGr~~l~  268 (310)
T d1vcfa1         244 YTGTDGAKAL-ALGADLLAVARPLLR  268 (310)
T ss_dssp             CSHHHHHHHH-HHTCSEEEECGGGHH
T ss_pred             CchHHHHHHH-HhCCCEeeEhHHHHH
Confidence            9999999999 699999999999875

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.22  E-value=2.3e-11  Score=105.14  Aligned_cols=76  Identities=13%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCC--cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRD--PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.+.++.+.++|+|+|.++++...+....  +..+. +.++.+..++||+++|||+|++|+.+++ ..|||+||||+++.
T Consensus       139 t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ipvia~GGI~t~~d~~~al-~~GAd~V~vGsAi~  216 (230)
T d1yxya1         139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVA-LIEALCKAGIAVIAEGKIHSPEEAKKIN-DLGVAGIVVGGAIT  216 (230)
T ss_dssp             SHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHH-HHHHHHHTTCCEEEESCCCSHHHHHHHH-TTCCSEEEECHHHH
T ss_pred             CHHHHHHHHhcCCCEEEeecccccccccccchHHHH-HHHHHhcCCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEChhhc
Confidence            35668888999999999998877654333  33333 5566667899999999999999999999 69999999999864

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=99.14  E-value=1.2e-10  Score=105.52  Aligned_cols=143  Identities=15%  Similarity=0.069  Sum_probs=104.3

Q ss_pred             HHHHHHHhhcCCCEEEEccCC---CccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEec--------------
Q 020428           90 ALTAAKMVCKDVAAIDINMGC---PKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIR--------------  151 (326)
Q Consensus        90 ~~~aa~~~~~~~d~idlN~gc---P~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r--------------  151 (326)
                      +.+|.+++..|+|-|-||-..   |.--    ..=+.+..+|.++.++++..-++ +-+.+.+|-.              
T Consensus       118 ~e~A~~ll~~GadKVvI~T~ai~~p~~~----~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~  193 (323)
T d1jvna1         118 LEVASLYFRSGADKVSIGTDAVYAAEKY----YELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFE  193 (323)
T ss_dssp             HHHHHHHHHHTCSEEEECHHHHHHHHHH----HHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEE
T ss_pred             hHHHHHHHHcCCCeEEechHHhhChHHH----HHHHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccccccccccc
Confidence            456666776799999987310   0000    00011235666777777777443 2233333321              


Q ss_pred             -----------------C-CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC
Q 020428          152 -----------------L-LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD  210 (326)
Q Consensus       152 -----------------~-g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg  210 (326)
                                       . ||.   .-+..++++.+++.|+..|.++...+++...|+ |+++++++.+.+++|||++||
T Consensus       194 ~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~~G~-D~el~~~i~~~~~iPiIasGG  272 (323)
T d1jvna1         194 TEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY-DLELIEHVKDAVKIPVIASSG  272 (323)
T ss_dssp             CSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCC-CHHHHHHHHHHCSSCEEECSC
T ss_pred             cccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeeccccccccc-chhHHHHHHHhCCCCEEEECC
Confidence                             1 222   236899999999999999999999999887666 999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          211 VFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       211 I~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.+|+.++++..+++||++|+++..
T Consensus       273 i~s~~di~~ll~~~~v~gv~~gs~~~~  299 (323)
T d1jvna1         273 AGVPEHFEEAFLKTRADACLGAGMFHR  299 (323)
T ss_dssp             CCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred             CCCHHHHHHHHHhCCCeEEEEhhHHHc
Confidence            999999999998889999999999764

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.11  E-value=6.6e-10  Score=102.19  Aligned_cols=206  Identities=15%  Similarity=0.081  Sum_probs=134.8

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++..|++++||.+-+      +......+.++|.....+.+-+. ...                         +......
T Consensus        67 ~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~-~~~-------------------------e~~~~~~  120 (353)
T d1p4ca_          67 RQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNM-SIE-------------------------DLARQCD  120 (353)
T ss_dssp             EESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSS-CHH-------------------------HHHHHCC
T ss_pred             CccCceeeccccccccccchhhHHHHHHHHHhhccccccccccc-cch-------------------------hHHHhcC
Confidence            467899999999754      35667778888876665432211 100                         0001112


Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccccc------------------------------cccc---
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS------------------------------GGMG---  121 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~------------------------------~~~G---  121 (326)
                      .+...|....++.......+.... ++..+.++..-|....+.                              ....   
T Consensus       121 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (353)
T d1p4ca_         121 GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAAL  200 (353)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHH
T ss_pred             CceeeeeccccHHHHHHhHHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHH
Confidence            345666665666655555555544 788777766544321000                              0000   


Q ss_pred             ccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc
Q 020428          122 AALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL  201 (326)
Q Consensus       122 ~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~  201 (326)
                      ..-..++....+-++.+++..+.|+.+|--.+      .+-+..+.+.|++.+.+......+....+..++.+.++....
T Consensus       201 ~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~------~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~  274 (353)
T d1p4ca_         201 MSRQMDASFNWEALRWLRDLWPHKLLVKGLLS------AEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT  274 (353)
T ss_dssp             TSSCCCTTCCHHHHHHHHHHCCSEEEEEEECC------HHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH
T ss_pred             HHhccCCCCCHHHHHHHHhccccchhhhcchh------hhhHHHHHhcCCchhhhcccccccccccccchhcccchhccc
Confidence            00011223344567777888888999988632      345677788999999987555555556677788888888888


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++|||+.|||+++-|+.++| ..|||+|++||++|....
T Consensus       275 ~~~viasGGIR~G~Dv~KAL-aLGAd~vgigrp~L~~l~  312 (353)
T d1p4ca_         275 GKPVLIDSGFRRGSDIVKAL-ALGAEAVLLGRATLYGLA  312 (353)
T ss_dssp             CSCEEECSSCCSHHHHHHHH-HTTCSCEEESHHHHHHHH
T ss_pred             ccceeecCCcCchHHHHHHH-HcCCCEEEEcHHHHHHHH
Confidence            99999999999999999999 699999999999886443

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.08  E-value=2.7e-09  Score=98.33  Aligned_cols=209  Identities=17%  Similarity=0.155  Sum_probs=137.8

Q ss_pred             CCCCceEEccccCCC------CHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCC
Q 020428            2 DYQNKLVLAPMVRVG------TLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQER   75 (326)
Q Consensus         2 ~l~~~iilAPM~g~t------~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (326)
                      ++.-|++++||.+-+      +......+.+.|.....+-+.+.. ..                         +......
T Consensus        68 ~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s-~~-------------------------~~~~~~~  121 (359)
T d1goxa_          68 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSS-VE-------------------------EVASTGP  121 (359)
T ss_dssp             EESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC-HH-------------------------HHHTTCC
T ss_pred             ccCCceeeccccccccCCCchHHHhhhhHHhhCCccccccccccc-ch-------------------------hhHHhcC
Confidence            467899999999742      345667777778776654332211 00                         0011122


Q ss_pred             CcEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCcccccc----ccccc-----------cccC------------
Q 020428           76 NHVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVS----GGMGA-----------ALLS------------  126 (326)
Q Consensus        76 ~p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~----~~~G~-----------~l~~------------  126 (326)
                      .|..+|+... +........+.+.. ++..+-++...|....+-    .+...           ....            
T Consensus       122 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (359)
T d1goxa_         122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSS  201 (359)
T ss_dssp             CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHH
T ss_pred             CCcccccccchhHHHHHHHHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhccccCcccccccHHH
Confidence            4788999654 45555555555554 888888877655432210    00000           0000            


Q ss_pred             ------ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428          127 ------KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA  200 (326)
Q Consensus       127 ------~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~  200 (326)
                            ++....+-++.+++..+.|+.+|.-.+      .+-+..+.+.|++.+.+...-..+....+...+.+..+++.
T Consensus       202 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~------~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~  275 (359)
T d1goxa_         202 YVAGQIDRSLSWKDVAWLQTITSLPILVKGVIT------AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKA  275 (359)
T ss_dssp             HHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCS------HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCHHHHHHHHhhcccceeeecccc------hHHHHHHHHccccceecccccccccccccchhhhchhhhhc
Confidence                  111122336777777788999988642      34467788999999999766666666677778888888877


Q ss_pred             c--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          201 L--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       201 ~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +  ++|||+.|||++.-|+.+++ ..|||+|.+||++|..+..-.
T Consensus       276 ~~~~~~iiadGGIR~G~Di~KAL-aLGAd~vgigrp~L~~la~~g  319 (359)
T d1goxa_         276 AQGRIPVFLDGGVRRGTDVFKAL-ALGAAGVFIGRPVVFSLAAEG  319 (359)
T ss_dssp             TTTSSCEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHHHHHHH
T ss_pred             cCCccceeeccCcCcHHHHHHHH-HcCCCEEEEcHHHHHHHHhcc
Confidence            6  69999999999999999999 699999999999987665443

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.07  E-value=4.6e-10  Score=97.90  Aligned_cols=143  Identities=18%  Similarity=0.283  Sum_probs=102.8

Q ss_pred             EEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC---
Q 020428           78 VVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL---  152 (326)
Q Consensus        78 ~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~---  152 (326)
                      +=+|++|  .+.+++   .+.+..|++-|-+|              +...++|+++.++.+...+++-+.+..|-..   
T Consensus        75 ~pi~vGGGIrs~~~~---~~ll~~Ga~kVvi~--------------s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~  137 (239)
T d1vzwa1          75 IKVELSGGIRDDDTL---AAALATGCTRVNLG--------------TAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRG  137 (239)
T ss_dssp             SEEEEESSCCSHHHH---HHHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECC
T ss_pred             cceEeecccccchhh---hhhhccccccchhh--------------HHhhhccccchhhhccCCceeeeeeccceeeecC
Confidence            3467754  344443   34555688888775              5678899999999999876643333332221   


Q ss_pred             -CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH--HhcCCc
Q 020428          153 -LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIK--TAAGAS  227 (326)
Q Consensus       153 -g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l--~~~Gad  227 (326)
                       +|.  ..+..+..+.+.+.|+..|.++.-.+++...|+ |+++++.+.+..++|++++|||.|.+|+.++.  ...|++
T Consensus       138 ~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~-d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~  216 (239)
T d1vzwa1         138 RGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGP-NLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVE  216 (239)
T ss_dssp             SSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CC-CHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEE
T ss_pred             ccceeeccccchhhhhhhhccccEEEEEeecccceecCC-cchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCcc
Confidence             232  235677888999999999999999999887766 89999999999999999999999999999884  346999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      ||.+|++++.+
T Consensus       217 gvivg~al~~g  227 (239)
T d1vzwa1         217 GAIVGKALYAK  227 (239)
T ss_dssp             EEEECHHHHTT
T ss_pred             EeeEhHHHHCC
Confidence            99999997653

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.04  E-value=1.5e-09  Score=95.26  Aligned_cols=142  Identities=18%  Similarity=0.238  Sum_probs=109.8

Q ss_pred             EEEEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC--
Q 020428           78 VVFQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL--  152 (326)
Q Consensus        78 ~~vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~--  152 (326)
                      +-+|++|  .+.++..   +++..|++-|-+|              +..+++|+++.++.+....+. -.-+.+|.+.  
T Consensus        75 ~pi~vgGGIrs~e~~~---~ll~~Ga~kVii~--------------s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~  137 (251)
T d1ka9f_          75 IPLTVGGGVRSLEDAR---KLLLSGADKVSVN--------------SAAVRRPELIRELADHFGAQAVVLAIDARWRGDF  137 (251)
T ss_dssp             SCEEEESSCCSHHHHH---HHHHHTCSEEEEC--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTE
T ss_pred             cchheeccccCHHHHH---HHHHcCCCEEEEC--------------chhhhCHHHHHHHHHhhcccccccccchhhcccc
Confidence            3456654  3444443   3454588888774              677899999999999985543 2233344321  


Q ss_pred             ------CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          153 ------LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       153 ------g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                            +|..   -+..++++.+++.|+..+.++.-.+++...|+ |+++++++.+..++|+|++||+.+.+|+.+++ .
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~-d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~-~  215 (251)
T d1ka9f_         138 PEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-Q  215 (251)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-H
T ss_pred             eEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCc-chhHHHHHHhhcceeEEEecCCCCHHHHHHHH-H
Confidence                  3432   35789999999999999999999999887666 89999999999999999999999999999999 5


Q ss_pred             cCCcEEEeccchhcC
Q 020428          224 AGASSVMAARGALWN  238 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~  238 (326)
                      .|++||++|++++.+
T Consensus       216 ~g~~gviig~al~~g  230 (251)
T d1ka9f_         216 AGAEAALAASVFHFG  230 (251)
T ss_dssp             TTCSEEEESHHHHTT
T ss_pred             CCCCEEEEhHHHHcC
Confidence            899999999987643

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.03  E-value=1.2e-09  Score=100.53  Aligned_cols=192  Identities=15%  Similarity=0.068  Sum_probs=121.2

Q ss_pred             CCCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecc-cCCCCcEE
Q 020428            2 DYQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTC-HQERNHVV   79 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~   79 (326)
                      .++-|||.|||-.+++..+.....++|. +.+--.+. .+......                     .... ......+.
T Consensus        42 ~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~-~~e~~~~~---------------------~~~~~~~~~~~v~   99 (365)
T d1zfja1          42 TLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMS-ITEQAEEV---------------------RKVKRSEGRLLVA   99 (365)
T ss_dssp             EESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSC-HHHHHHHH---------------------HHHHHHTSCBCCE
T ss_pred             ccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccC-HHHHHHHh---------------------hhhhhccCceEEE
Confidence            3567999999999999999988888875 44322211 11110000                     0000 11112234


Q ss_pred             EEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHH
Q 020428           80 FQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQD  158 (326)
Q Consensus        80 vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~  158 (326)
                      +-+ |.+++.+.++..++..|+|.|=|...-.               ..+.+.+.++.+++.. +.||.+--=      .
T Consensus       100 aav-Gv~~~~~er~~~l~~agvd~ivID~A~G---------------~s~~~~~~i~~ik~~~~~~~iIaGNV------~  157 (365)
T d1zfja1         100 AAV-GVTSDTFERAEALFEAGADAIVIDTAHG---------------HSAGVLRKIAEIRAHFPNRTLIAGNI------A  157 (365)
T ss_dssp             EEE-CSSTTHHHHHHHHHHHTCSEEEECCSCT---------------TCHHHHHHHHHHHHHCSSSCEEEEEE------C
T ss_pred             EEe-ccCchHHHHHHHHHHcCCCEEEEECCcc---------------cccchhHHHHHHHhhCCCcceeeccc------c
Confidence            444 3445566666666656999765543211               2345566777777765 667665331      3


Q ss_pred             HHHHHHHHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHH---HHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          159 TVELARRIEKTGVSALAVHGR------KVADRPRDPAKWGEIADI---VAALSIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i---~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      +.+.+..|.++|||.|.|--.      |+.....+.+.+..+.++   ++..++|||+-|||.+.-|+.++| ..|||+|
T Consensus       158 T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAl-a~GAd~V  236 (365)
T d1zfja1         158 TAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL-AAGGNAV  236 (365)
T ss_dssp             SHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH-HTTCSEE
T ss_pred             cHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhh-hccCCEE
Confidence            356677888999999987422      111222344556666544   445689999999999999999999 6999999


Q ss_pred             EeccchhcC
Q 020428          230 MAARGALWN  238 (326)
Q Consensus       230 miGr~~l~~  238 (326)
                      |+|+-|-..
T Consensus       237 MlG~~lAg~  245 (365)
T d1zfja1         237 MLGSMFAGT  245 (365)
T ss_dssp             EESTTTTTB
T ss_pred             Eecchhccc
Confidence            999987764

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.03  E-value=1.8e-09  Score=94.92  Aligned_cols=139  Identities=21%  Similarity=0.247  Sum_probs=108.2

Q ss_pred             EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEecC----
Q 020428           80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIRL----  152 (326)
Q Consensus        80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r~----  152 (326)
                      +|++|  .+.++..+   ++..|++-|-+|              +....+|+++.++.+..-+. +-+.+.+|..-    
T Consensus        79 i~~gGGIr~~e~~~~---ll~~G~~kVii~--------------s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~  141 (252)
T d1h5ya_          79 VLVGGGVRSLEDATT---LFRAGADKVSVN--------------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYE  141 (252)
T ss_dssp             EEEESSCCSHHHHHH---HHHHTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEE
T ss_pred             ceeecccchhhhhhh---HhhcCCcEEEec--------------ccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEE
Confidence            45544  34444433   344588888764              67788999999999988544 44445554331    


Q ss_pred             ----CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcC
Q 020428          153 ----LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG  225 (326)
Q Consensus       153 ----g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~G  225 (326)
                          +|..   -+..++++.+++.|+..+.++...+++...|+ |++.++++++..++||+++|||.+.+|+.++. ..|
T Consensus       142 v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~-d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~-~~g  219 (252)
T d1h5ya_         142 VYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGY-DVELIRRVADSVRIPVIASGGAGRVEHFYEAA-AAG  219 (252)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCC-CHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTT
T ss_pred             EEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCc-CHHHHHHHHHhcCCCEEEecCCCCHHHHHHHH-HCC
Confidence                3432   25789999999999999999999999887665 89999999999999999999999999999988 589


Q ss_pred             CcEEEeccchhc
Q 020428          226 ASSVMAARGALW  237 (326)
Q Consensus       226 ad~VmiGr~~l~  237 (326)
                      ++||.+|++++.
T Consensus       220 ~~gv~~gs~l~~  231 (252)
T d1h5ya_         220 ADAVLAASLFHF  231 (252)
T ss_dssp             CSEEEESHHHHT
T ss_pred             CCEEEEhhHHHc
Confidence            999999998764

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=99.03  E-value=1.6e-09  Score=100.85  Aligned_cols=131  Identities=21%  Similarity=0.162  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHH
Q 020428           86 DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        86 ~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      .++...++..++..|+|.|=|....        +       ..+.+.++++.+++.. ++||.+.-=      .+.+-++
T Consensus       149 ~~~~~~ra~~L~~aG~D~ivID~Ah--------G-------~s~~~~~~i~~ik~~~~~v~vIaGNV------~T~e~a~  207 (388)
T d1eepa_         149 DIDTIERVEELVKAHVDILVIDSAH--------G-------HSTRIIELIKKIKTKYPNLDLIAGNI------VTKEAAL  207 (388)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEECCSC--------C-------SSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHHHH
T ss_pred             CHHHHHHHHHHHhhccceeeeeccc--------c-------chHHHHHHHHHHHHHCCCCceeeccc------cCHHHHH
Confidence            3455566666665699877664321        1       2345677888888765 677766442      3456678


Q ss_pred             HHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          165 RIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       165 ~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .|.++|||+|.|--.      |+.....+.+.+..+..+.+   ...+|||+-|||.+.-|+.+.| ..|||+||+|+.+
T Consensus       208 ~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAl-a~GAd~VMlG~~l  286 (388)
T d1eepa_         208 DLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAI-AAGADSVMIGNLF  286 (388)
T ss_dssp             HHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHH-HHTCSEEEECHHH
T ss_pred             HHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeE-Eeccceeecchhh
Confidence            888999999987422      22222234455666665544   3589999999999999999999 6999999999988


Q ss_pred             hcC
Q 020428          236 LWN  238 (326)
Q Consensus       236 l~~  238 (326)
                      -..
T Consensus       287 Ag~  289 (388)
T d1eepa_         287 AGT  289 (388)
T ss_dssp             HTB
T ss_pred             hcc
Confidence            753

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=1.9e-09  Score=94.70  Aligned_cols=139  Identities=20%  Similarity=0.255  Sum_probs=107.1

Q ss_pred             EEECC--CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhc-ccCcEEEEec-----
Q 020428           80 FQMGT--SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRN-LDVPVTCKIR-----  151 (326)
Q Consensus        80 vQl~g--~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~-~~~pv~vK~r-----  151 (326)
                      +|++|  .+.+   ++.+++..|++-|-||              +..+++|+++.++.+..-+. +-..+.++..     
T Consensus        77 i~vgGGIr~~e---~i~~~l~~Ga~kviig--------------s~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~  139 (253)
T d1thfd_          77 FTVGGGIHDFE---TASELILRGADKVSIN--------------TAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFM  139 (253)
T ss_dssp             EEEESSCCSHH---HHHHHHHTTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE
T ss_pred             ceeecccccch---hhhhHHhcCCCEEEEC--------------hHHhhChHHHHHHHHHcCCeeEEEeeeecccCCcee
Confidence            56654  3433   3334455688888764              67889999999999999544 2222222211     


Q ss_pred             --C-CCC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcC
Q 020428          152 --L-LKS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAG  225 (326)
Q Consensus       152 --~-g~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~G  225 (326)
                        . +|.   ..+..++++.+++.|+..|.++.-.+++...|+ |++.++++++..++||+++||+.|.+|+.+++ ..|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~-d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~-~~g  217 (253)
T d1thfd_         140 VFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAG  217 (253)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH-HTT
T ss_pred             eeeeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCc-cccccccccccccceEEEecCCCCHHHHHHHH-HCC
Confidence              1 232   235789999999999999999999999877665 89999999999999999999999999999998 689


Q ss_pred             CcEEEeccchhc
Q 020428          226 ASSVMAARGALW  237 (326)
Q Consensus       226 ad~VmiGr~~l~  237 (326)
                      +++|.+|++++.
T Consensus       218 ~~gvivgsal~~  229 (253)
T d1thfd_         218 ADAALAASVFHF  229 (253)
T ss_dssp             CSEEEESHHHHT
T ss_pred             CCEEEEchHHHc
Confidence            999999998764

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=6.7e-09  Score=97.51  Aligned_cols=160  Identities=22%  Similarity=0.196  Sum_probs=107.1

Q ss_pred             CCcEEEEECC-CCHHHHHHHHHHhhc-CCCEEEEccCCCccccc-------------------------cccccccc--c
Q 020428           75 RNHVVFQMGT-SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSV-------------------------SGGMGAAL--L  125 (326)
Q Consensus        75 ~~p~~vQl~g-~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~-------------------------~~~~G~~l--~  125 (326)
                      ..+..+|+.. .+........++++. +++.+-++...|....+                         ..+.+..+  .
T Consensus       149 ~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  228 (414)
T d1kbia1         149 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF  228 (414)
T ss_dssp             SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred             ccchhhcccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHh
Confidence            3467889865 456666666666655 88877776665542110                         01111111  1


Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-----
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-----  200 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-----  200 (326)
                      -++.+.-+.++.++..++.|+.+|--.      ..+-+..+.+.|++.+.+.+....+....+.....+..+.+.     
T Consensus       229 ~~~~l~~~~i~~i~~~~~~~~i~kgi~------~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~  302 (414)
T d1kbia1         229 IDPSLTWKDIEELKKKTKLPIVIKGVQ------RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRN  302 (414)
T ss_dssp             BCTTCCHHHHHHHHHHCSSCEEEEEEC------SHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             cccCCCHHHHHHHhccCCceEEeeccc------hhHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhc
Confidence            122233456888888889999999753      234566778899999999776555554455544555555432     


Q ss_pred             --cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          201 --LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       201 --~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                        -++|||+.|||++.-|+.+++ ..|||+|.|||.+|.....
T Consensus       303 v~~~~~viadGGIR~G~DVaKAL-ALGAdaVgigrp~L~~la~  344 (414)
T d1kbia1         303 LKDKLEVFVDGGVRRGTDVLKAL-CLGAKGVGLGRPFLYANSC  344 (414)
T ss_dssp             CBTTBEEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHHHHH
T ss_pred             cCCceeEEecCCcCcHHHHHHHH-HcCCCEEEEcHHHHHHHHh
Confidence              258999999999999999999 6999999999998865443

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=2.6e-09  Score=93.14  Aligned_cols=138  Identities=13%  Similarity=0.170  Sum_probs=100.3

Q ss_pred             EEECCC--CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC----C
Q 020428           80 FQMGTS--DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL----L  153 (326)
Q Consensus        80 vQl~g~--~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~----g  153 (326)
                      +|++|.  +.++   +-+++..|++-|-+|              +.+.++|+++.++.+ ......+.+.+|-..    +
T Consensus        76 l~~gGGI~s~~~---~~~~~~~Ga~kVvi~--------------s~~~~~~~~~~~~~~-~~~~~~v~iD~~~~~~~~~g  137 (241)
T d1qo2a_          76 IQIGGGIRSLDY---AEKLRKLGYRRQIVS--------------SKVLEDPSFLKSLRE-IDVEPVFSLDTRGGRVAFKG  137 (241)
T ss_dssp             EEEESSCCSHHH---HHHHHHTTCCEEEEC--------------HHHHHCTTHHHHHHT-TTCEEEEEEEEETTEECCTT
T ss_pred             hhhhhhhhhhhh---hhhccccccceEecC--------------cccccCchhhhhhcc-cccceeeecccccccccccC
Confidence            466553  4443   334555588988775              566778877666433 222222233333221    3


Q ss_pred             CC---hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-----hcC
Q 020428          154 KS---SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKT-----AAG  225 (326)
Q Consensus       154 ~~---~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~-----~~G  225 (326)
                      |.   ..+..++++.+++.|+..|.++.-.+++...|+ |++.++++.+.+++|||++|||.|.+|+.++.+     ..|
T Consensus       138 ~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~-d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~  216 (241)
T d1qo2a_         138 WLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGL  216 (241)
T ss_dssp             CSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTS
T ss_pred             cccceeeehhHHHHHhhccccceEEEeehhhhhhcccc-chhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCC
Confidence            32   236789999999999999999999888777666 999999999999999999999999999999974     246


Q ss_pred             CcEEEeccchh
Q 020428          226 ASSVMAARGAL  236 (326)
Q Consensus       226 ad~VmiGr~~l  236 (326)
                      ++||.+|++++
T Consensus       217 ~~gvivG~al~  227 (241)
T d1qo2a_         217 LKGVIVGRAFL  227 (241)
T ss_dssp             EEEEEECHHHH
T ss_pred             EeeEEEHHHHH
Confidence            99999999975

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=1.9e-07  Score=79.40  Aligned_cols=199  Identities=18%  Similarity=0.132  Sum_probs=131.8

Q ss_pred             CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +|+.|+++.- ..|.+ ..++......|+.++.-   +.+...-..   ......+++            .+..+-.+..
T Consensus         9 ~f~SRLilGT-gkY~s~~~~~~ai~aSgaeiVTV---AlRR~~~~~---~~~~~~l~~------------i~~~~~~lLP   69 (251)
T d1xm3a_           9 SFQSRLLLGT-GKYPSFDIQKEAVAVSESDILTF---AVRRMNIFE---ASQPNFLEQ------------LDLSKYTLLP   69 (251)
T ss_dssp             EESCCEEEEC-SCSSCHHHHHHHHHHHTCSEEEE---ETTSSTTC----------CTT------------CCGGGSEEEE
T ss_pred             EEEcceEEEc-CCCCCHHHHHHHHHHhCCCEEEE---EEeeecCcC---CCCcchhhh------------ccccceEEcc
Confidence            4677888754 45644 45667777779887732   111110000   001112222            2222334555


Q ss_pred             EE-CCCCHHHHHHHHHHhhc--CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428           81 QM-GTSDAVRALTAAKMVCK--DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        81 Ql-~g~~~~~~~~aa~~~~~--~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~  157 (326)
                      += ++.+.++..+.|+++.+  +-++|-|-.=       .+.  -.|+-|+....+..+.+.+. +.-|..=+.      
T Consensus        70 NTAGc~tA~EAvr~A~lARE~~~t~~IKLEVi-------~D~--~~L~PD~~etl~Aae~Lv~e-GF~VlpY~~------  133 (251)
T d1xm3a_          70 NTAGASTAEEAVRIARLAKASGLCDMIKVEVI-------GCS--RSLLPDPVETLKASEQLLEE-GFIVLPYTS------  133 (251)
T ss_dssp             ECTTCSSHHHHHHHHHHHHHTTCCSSEEECCB-------CCT--TTCCBCHHHHHHHHHHHHHT-TCCEEEEEC------
T ss_pred             chHHHhhHHHHHHHHHHHHHhcCCceEEEEEe-------cCC--CCcCCCHHHHHHHHHHHHhC-CcEEEEecC------
Confidence            65 45789999999999987  5577776531       111  24777776666666666543 666666664      


Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +-..+|+.|++.|+..|.--|-... ...|..+...++.|.+..++|||.-+||.++.|+..++ +.|||+|++.+++-.
T Consensus       134 ~D~v~ak~Le~~Gc~avMPlgsPIG-Sg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AM-ElG~daVLvNTAIA~  211 (251)
T d1xm3a_         134 DDVVLARKLEELGVHAIMPGASPIG-SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAM-ELGADGVLLNTAVSG  211 (251)
T ss_dssp             SCHHHHHHHHHHTCSCBEECSSSTT-CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HTTCSEEEESHHHHT
T ss_pred             CCHHHHHHHHHcCChhHHHhhhhhh-cCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHH-HccCCEEEechhhhc
Confidence            2246899999999999877654332 23467788999999999999999999999999999999 699999999998654

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=98.77  E-value=3.4e-08  Score=90.81  Aligned_cols=189  Identities=17%  Similarity=0.087  Sum_probs=110.1

Q ss_pred             CCCceEEccccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE
Q 020428            3 YQNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM   82 (326)
Q Consensus         3 l~~~iilAPM~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl   82 (326)
                      ++-|||-|||-.+++..+.....++|.=-+..-+.+.+.....                      ..........+...+
T Consensus        49 l~iPIIsAnMDTVt~~~mA~~la~~GglgvihR~~~ie~~~~~----------------------~~~~~~~~~~~~~~~  106 (362)
T d1pvna1          49 LKIPLVSAIMQSVSGEKMAIALAREGGISFIFGSQSIESQAAM----------------------VHAVKNFRYLVGAGI  106 (362)
T ss_dssp             ESSSEEECSCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHH----------------------HHHHHTCCCCCEEEE
T ss_pred             cCCcEEecCCCCcCCHHHHHHHHHCCCEEEEeecCCHHHHHHH----------------------hhhhhhccccccccc
Confidence            4569999999999999998777787752232222222211100                      000011111122222


Q ss_pred             CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           83 GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      ...+..  ..+-.++..+++.|=|...        .++.       +.+.+.++.+++..  .+||.+.-=      -+.
T Consensus       107 ~~~~~~--~~~~~L~~ag~d~i~IDvA--------hG~~-------~~v~~~i~~ir~~~~~~~~IiAGNV------aT~  163 (362)
T d1pvna1         107 NTRDFR--ERVPALVEAGADVLCIDSS--------DGFS-------EWQKITIGWIREKYGDKVKVGAGNI------VDG  163 (362)
T ss_dssp             CSSSHH--HHHHHHHHHTCSEEEECCS--------CCCB-------HHHHHHHHHHHHHHGGGSCEEEEEE------CSH
T ss_pred             chhhhH--HHHHHHhhcCceEEeechh--------ccch-------hHHHHHHHHHHHhhccceeeecccc------cCH
Confidence            223322  2333334447776555331        1222       34556677775544  467766431      234


Q ss_pred             HHHHHHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHHh---------cCCcEEEeCCCCCHHHHHHHHHhcC
Q 020428          161 ELARRIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVAA---------LSIPVIANGDVFEYDDFQRIKTAAG  225 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~~---------~~iPVi~nGgI~s~~d~~~~l~~~G  225 (326)
                      +.++.|.++|+|.|-|--.      |+....-+.+.+..+.++++.         .++|||+-|||+++.|+.++| ..|
T Consensus       164 e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAl-a~G  242 (362)
T d1pvna1         164 EGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLAL-AMG  242 (362)
T ss_dssp             HHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHH-HTT
T ss_pred             HHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEE-EEe
Confidence            5577788899999987311      111222244556666655432         369999999999999999999 699


Q ss_pred             CcEEEeccchhc
Q 020428          226 ASSVMAARGALW  237 (326)
Q Consensus       226 ad~VmiGr~~l~  237 (326)
                      ||+||+|+-|-.
T Consensus       243 Ad~VM~G~~lAg  254 (362)
T d1pvna1         243 ADFIMLGRYFAR  254 (362)
T ss_dssp             CSEEEESHHHHT
T ss_pred             ccceeehhhhhc
Confidence            999999987664

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.75  E-value=2.9e-08  Score=91.44  Aligned_cols=197  Identities=14%  Similarity=0.087  Sum_probs=116.2

Q ss_pred             CCCceEEccccCCCCHHHHHHHHHcCC-CeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEE
Q 020428            3 YQNKLVLAPMVRVGTLPFRLLAAQYGA-DITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQ   81 (326)
Q Consensus         3 l~~~iilAPM~g~t~~~fr~~~~~~G~-~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQ   81 (326)
                      ++-||+-|||-.+++..+.....++|. +.+ .-+.+.+.....-+....    .+.        ......++...+.+.
T Consensus        44 l~iPIiss~MDtV~~~~mA~~la~~Gglgvl-hr~~~~e~~~~~v~~v~~----~e~--------~~~~~~d~~~~~~v~  110 (368)
T d2cu0a1          44 LNIPILSAAMDTVTEWEMAVAMAREGGLGVI-HRNMGIEEQVEQVKRVKR----AEK--------YKNAVRDENGELLVA  110 (368)
T ss_dssp             ESSSEEECCCTTTCSHHHHHHHHHTTCEEEE-CSSSCHHHHHHHHHHHHT----CCC--------CTTCCBCTTSCBCCE
T ss_pred             cCCCEEeCCCCCcCCHHHHHHHHHCCCeeEe-cccCCHHHHHHHHHhhhh----hhh--------ccccccccCccEEEE
Confidence            556999999999999999988888875 333 222222221111000000    000        000011112223333


Q ss_pred             ECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHH
Q 020428           82 MGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        82 l~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e  161 (326)
                      .. ..++++.++..++..|+|.|-|...-.+               .+.+.+.++.+++..+.||.+---  -+.+.+  
T Consensus       111 ~~-~~~~~~~r~~~l~~aGvd~ivID~A~Gh---------------~~~~i~~lK~ir~~~~~~vIaGNV--aT~e~~--  170 (368)
T d2cu0a1         111 AA-VSPFDIKRAIELDKAGVDVIVVDTAHAH---------------NLKAIKSMKEMRQKVDADFIVGNI--ANPKAV--  170 (368)
T ss_dssp             EE-ECTTCHHHHHHHHHTTCSEEEEECSCCC---------------CHHHHHHHHHHHHTCCSEEEEEEE--CCHHHH--
T ss_pred             ec-cChHHHHHHHHHHHcCCCEEEecCcccc---------------hhhhhhhhhhhhhhcccceeeccc--cCHHHH--
Confidence            22 2345566666666669998766543221               234566788888888877765321  222222  


Q ss_pred             HHHHHHHcCCcEEEEeec------ccCCCCCCcCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          162 LARRIEKTGVSALAVHGR------KVADRPRDPAKWGEIADIVA---ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r------~~~~~~~~~~~~~~i~~i~~---~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                          +...|+|+|-|--.      |+.....+.+.+..+.++.+   ..++|||+-|||.+.-|+.+.| ..|||+||+|
T Consensus       171 ----~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAl-a~GAd~VMlG  245 (368)
T d2cu0a1         171 ----DDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAI-AAGADAVMLG  245 (368)
T ss_dssp             ----TTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHH-HTTCSEEEES
T ss_pred             ----HhhhcCcceeecccCcccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheee-eeccceeecc
Confidence                22369999987211      11222235556777666553   4589999999999999999999 6999999999


Q ss_pred             cchhc
Q 020428          233 RGALW  237 (326)
Q Consensus       233 r~~l~  237 (326)
                      +.|-.
T Consensus       246 ~~lAg  250 (368)
T d2cu0a1         246 NLLAG  250 (368)
T ss_dssp             TTTTT
T ss_pred             chhcc
Confidence            87664

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.69  E-value=2.2e-06  Score=73.33  Aligned_cols=200  Identities=15%  Similarity=0.149  Sum_probs=125.1

Q ss_pred             CCCCceEEccccCCCC-HHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceeeecccCCCCcEEE
Q 020428            2 DYQNKLVLAPMVRVGT-LPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVF   80 (326)
Q Consensus         2 ~l~~~iilAPM~g~t~-~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v   80 (326)
                      +|+.|+++.- ..|.+ ..+.......|+.++..   +....         +++..     .....+....+..+..+..
T Consensus         9 ~f~SRLilGT-Gky~s~~~~~~ai~aSgaeiVTV---AvRR~---------~~~~~-----~~~~~l~~~i~~~~~~~LP   70 (243)
T d1wv2a_           9 TYGSRLLVGT-GKYKDLDETRRAIEASGAEIVTV---AVRRT---------NIGQN-----PDEPNLLDVIPPDRYTILP   70 (243)
T ss_dssp             EESCCEEECC-SCSSSHHHHHHHHHHSCCSEEEE---EGGGC---------CC------------------CTTTSEEEE
T ss_pred             EEEcceEEEc-CCCCCHHHHHHHHHHhCCCEEEE---Ecccc---------ccCCC-----cccchHHHhccccCeeecc
Confidence            4567777753 33444 45556666678877731   11111         00000     0000122222333333455


Q ss_pred             EE-CCCCHHHHHHHHHHhhc-C--CCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           81 QM-GTSDAVRALTAAKMVCK-D--VAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        81 Ql-~g~~~~~~~~aa~~~~~-~--~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      +- ++.++++..++|++..+ .  -+.|.|..-         +---.|+.|+-...+..+.+.+. +.-|..=+.     
T Consensus        71 NTAGc~taeeAv~~A~larE~~~~~~~iKLEVi---------~d~~~L~Pd~~etl~Aa~~Lv~e-gF~Vlpy~~-----  135 (243)
T d1wv2a_          71 NTAGCYDAVEAVRTCRLARELLDGHNLVKLEVL---------ADQKTLFPNVVETLKAAEQLVKD-GFDVMVYTS-----  135 (243)
T ss_dssp             ECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCB---------SCTTTCCBCHHHHHHHHHHHHTT-TCEEEEEEC-----
T ss_pred             cccccccHHHHHHHHHHHHHHhCCCceEEEeee---------ccccccCCcHHHHHHHHHHhhcC-ceEEEeccC-----
Confidence            55 34689999999999887 3  368888642         11124666776666666555433 455555553     


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                       +-.-+++.+++.|+..+.--|-.- +...|..+...++.+++..++|||.-+||.+++|+..++ +.|||||.+++|+.
T Consensus       136 -~D~v~ak~le~~Gc~~vMplgsPI-Gsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AM-ElG~dgVLvnsaIa  212 (243)
T d1wv2a_         136 -DDPIIARQLAEIGCIAVMPLAGLI-GSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAM-ELGCEAVLMNTAIA  212 (243)
T ss_dssp             -SCHHHHHHHHHSCCSEEEECSSST-TCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HHTCSEEEESHHHH
T ss_pred             -CCHHHHhHHHHcCceeeeeccccc-ccccccccHHHHHhccccCCcceEeecccCCHHHHHHHH-HccCCEEEechHhh
Confidence             234679999999999987654422 222456677888888989999999999999999999999 69999999999965


Q ss_pred             c
Q 020428          237 W  237 (326)
Q Consensus       237 ~  237 (326)
                      .
T Consensus       213 ~  213 (243)
T d1wv2a_         213 H  213 (243)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=98.57  E-value=5.7e-07  Score=88.63  Aligned_cols=109  Identities=15%  Similarity=0.124  Sum_probs=82.7

Q ss_pred             cCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC--------CcCCHHHHH
Q 020428          125 LSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR--------DPAKWGEIA  195 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--------~~~~~~~i~  195 (326)
                      ...++.+.++|..+|+.. +.||.||+-.+..   ..+++..+.++|+|.|+|.|......-.        |-+-...+.
T Consensus       552 i~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~---~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~  628 (771)
T d1ea0a2         552 IYSIEDLAQLIYDLKQINPDAKVTVKLVSRSG---IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLS  628 (771)
T ss_dssp             CSSHHHHHHHHHHHHHHCTTCEEEEEEECCTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCEEEEECCcCc---HHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHH
Confidence            457889999999999877 8999999975433   3456667778999999999886543211        222122234


Q ss_pred             HHHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          196 DIVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       196 ~i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.+.+       +|.+++.||+.|+.|+.+++ ..|||+|.+||++|.
T Consensus       629 ~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~-aLGAD~v~~gt~~m~  676 (771)
T d1ea0a2         629 EVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAA-MLGAEEFGIGTASLI  676 (771)
T ss_dssp             HHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHH-HTTCSEEECCHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHH-HhCCCchHHhHHHHH
Confidence            444332       59999999999999999999 699999999999983

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=8.6e-08  Score=83.84  Aligned_cols=86  Identities=17%  Similarity=0.319  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|+|.+++..-.+... ..+.+++.+.++.+.+.+|+.+.|||++.+++++++ ..||+-|.+|+.++
T Consensus        30 gdP~~~a~~~~~~g~dei~ivDld~~~~-~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l-~~Ga~kviigs~~~  107 (253)
T d1thfd_          30 GDPVELGKFYSEIGIDELVFLDITASVE-KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELI-LRGADKVSINTAAV  107 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEESSCSSS-HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HTTCSEEEESHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeeccccc-CcccHHHHHHHHHhccCccceeecccccchhhhhHH-hcCCCEEEEChHHh
Confidence            4688999999999999999976644321 234578899999999999999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       108 ~n~~~l~~  115 (253)
T d1thfd_         108 ENPSLITQ  115 (253)
T ss_dssp             HCTHHHHH
T ss_pred             hChHHHHH
Confidence            99988665

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.45  E-value=3.2e-06  Score=71.36  Aligned_cols=111  Identities=23%  Similarity=0.312  Sum_probs=79.6

Q ss_pred             cccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEee------------------
Q 020428          117 SGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHG------------------  178 (326)
Q Consensus       117 ~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~------------------  178 (326)
                      +...|-+-+.+|+.+.+|+++    +++||..|.|+|...     -++.|++.|+|++.=+.                  
T Consensus        36 R~~GGvaRm~dp~~i~ei~~~----vsipvmak~righ~~-----eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkv  106 (254)
T d1znna1          36 RAAGGVARMADPTVIEEVMNA----VSIPVMAKVRIGHYV-----EARVLEALGVDYIDESEVLTPADEEFHIDKRQFTV  106 (254)
T ss_dssp             ---CCCCCCCCHHHHHHHHHH----CSSCEEEEEETTCHH-----HHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSS
T ss_pred             HhcCCcccCCCHHHHHHHHHh----cccccccccCCCchH-----HHHhHHhhCCCcccHhHhcccccHHHhhcccceee
Confidence            334478889999887777655    489999999998632     37889999999986210                  


Q ss_pred             -----------------------cccCCCCCC----------------------------------cCCHHHHHHHHH--
Q 020428          179 -----------------------RKVADRPRD----------------------------------PAKWGEIADIVA--  199 (326)
Q Consensus       179 -----------------------r~~~~~~~~----------------------------------~~~~~~i~~i~~--  199 (326)
                                             |++.....+                                  ...++++.++.+  
T Consensus       107 pfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g  186 (254)
T d1znna1         107 PFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLG  186 (254)
T ss_dssp             CEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHT
T ss_pred             eeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhC
Confidence                                   011100000                                  233566666665  


Q ss_pred             hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          200 ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       200 ~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .+++|+++.|||.|+.|+..++ +.|||||.+|+|+..
T Consensus       187 ~l~v~~~~~~Gi~tpadaa~~M-elG~dgV~v~s~I~~  223 (254)
T d1znna1         187 RLPVVNFAAGGVTTPADAALMM-HLGADGVFVGSGIFK  223 (254)
T ss_dssp             SCSSEEEEESSCCSHHHHHHHH-HTTCSEEEECGGGGG
T ss_pred             CCCceEEecCCCCChhhHHHHH-HcCCCEEEEcchhhc
Confidence            3679999999999999999999 699999999999544

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=98.45  E-value=8.1e-08  Score=86.61  Aligned_cols=87  Identities=14%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHH-----------HHHHHHHh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVA--DRPRDPAKWGEIADIVAALSIPVIANGDVFEYD-----------DFQRIKTA  223 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~-----------d~~~~l~~  223 (326)
                      .++++.|+.+++.|||.|++-.-.+.  ..+....+++.++++++.+.+||.+.|||+|.+           .|.+++ .
T Consensus        48 GdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll-~  126 (323)
T d1jvna1          48 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF-R  126 (323)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH-H
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHH-H
Confidence            48899999999999999998766543  222234468999999999999999999999964           478899 6


Q ss_pred             cCCcEEEeccchhcCcccccc
Q 020428          224 AGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       224 ~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      .|||-|.||++++.||.++.+
T Consensus       127 ~GadKVvI~T~ai~~p~~~~e  147 (323)
T d1jvna1         127 SGADKVSIGTDAVYAAEKYYE  147 (323)
T ss_dssp             HTCSEEEECHHHHHHHHHHHH
T ss_pred             cCCCeEEechHHhhChHHHHH
Confidence            899999999999988876543

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.45  E-value=3.5e-06  Score=71.71  Aligned_cols=129  Identities=14%  Similarity=0.136  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-CChHHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-KSSQDTVELARRI  166 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-~~~~~~~e~a~~l  166 (326)
                      ...++...+..|+|.||+=+          .+|...-.+.+.+.+-++++++.+ +.++-|-+-.+ .+.++....++.+
T Consensus        72 K~~E~~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a  141 (225)
T d1mzha_          72 KVKEAVEAVRDGAQELDIVW----------NLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEIC  141 (225)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEee----------chhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHH
Confidence            44555566667999999843          244445567788888888888776 44444444333 4667788899999


Q ss_pred             HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .++|+|+|--    ..+...+.+..+.++.+++.+  ++.|=++|||+|.+++.+++ +.|++-+-..
T Consensus       142 ~~aGadfiKT----STG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i-~~Ga~RiGtS  204 (225)
T d1mzha_         142 IEAGADFIKT----STGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMI-EAGADRIGTS  204 (225)
T ss_dssp             HHHTCSEEEC----CCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEES
T ss_pred             HHcccceEee----cCCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHH-HhchhheecC
Confidence            9999999953    333334456677787777765  58899999999999999999 6899954333

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.43  E-value=1.2e-07  Score=82.98  Aligned_cols=85  Identities=27%  Similarity=0.379  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++|+.+++.|+|.+++....+... ..+.+++.++++.+.+.+|+.+.|||+|.+++++++ ..||+-|.+|+.++.
T Consensus        33 dP~~~a~~~~~~gadei~ivDl~~~~~-~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll-~~G~~kVii~s~~~~  110 (252)
T d1h5ya_          33 DPVEMAVRYEEEGADEIAILDITAAPE-GRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLF-RAGADKVSVNTAAVR  110 (252)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEECCCCTT-THHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHH
T ss_pred             CHHHHHHHHHHCCCCEEEEEecccccc-ccccHHHHHHHHHhhcCCcceeecccchhhhhhhHh-hcCCcEEEecccccC
Confidence            578999999999999999987765532 235578899999999999999999999999999999 699999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      ||.++.+
T Consensus       111 ~~~~~~~  117 (252)
T d1h5ya_         111 NPQLVAL  117 (252)
T ss_dssp             CTHHHHH
T ss_pred             CcchHHH
Confidence            9988765

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.43  E-value=7.7e-07  Score=77.13  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHhhcCCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      .+.+...+.++.+.+|+|.|||.+  |.+.-..+|      .-.+|-  -+.+.+.++++++++..++|+.+=.=  +++
T Consensus        16 P~~~~s~~~l~~l~~g~d~iEiGi--PfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y--~N~   91 (248)
T d1geqa_          16 PDKQSTLNFLLALDEYAGAIELGI--PFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTY--YNP   91 (248)
T ss_dssp             SCHHHHHHHHHHHGGGBSCEEEEC--CCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEEC--HHH
T ss_pred             CCHHHHHHHHHHHHcCCCEEEECC--CCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEec--ccc
Confidence            366788888888866999999865  432211111      111111  25678889999999888888765221  111


Q ss_pred             ---HHHHHHHHHHHHcCCcEEEE-------------------------eecccC--------------------CCCCC-
Q 020428          157 ---QDTVELARRIEKTGVSALAV-------------------------HGRKVA--------------------DRPRD-  187 (326)
Q Consensus       157 ---~~~~e~a~~l~~~G~d~i~v-------------------------h~r~~~--------------------~~~~~-  187 (326)
                         .-..++++.+.++|+|++++                         -.-+..                    ..-+| 
T Consensus        92 i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~  171 (248)
T d1geqa_          92 IYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGA  171 (248)
T ss_dssp             HHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-----
T ss_pred             ccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEeccccccc
Confidence               11344555555555555554                         211110                    00011 


Q ss_pred             -----cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 -----PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 -----~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           ..-.+.++++++.+++||+..-||.|++|+.+++ ..+||||.||++++.
T Consensus       172 ~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~-~~~ADGvIVGSaiv~  225 (248)
T d1geqa_         172 REEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLL-KEGANGVVVGSALVK  225 (248)
T ss_dssp             --CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred             chhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence                 1124678899999999999999999999999999 589999999999874

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.42  E-value=3.1e-06  Score=73.83  Aligned_cols=152  Identities=13%  Similarity=0.151  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEcc--CCCccc--ccccccccccc--CChHHHHHHHHHHhhcccCcEEEEecC-----
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINM--GCPKSF--SVSGGMGAALL--SKPELIHDILTMLKRNLDVPVTCKIRL-----  152 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~--gcP~~~--~~~~~~G~~l~--~~p~~~~~iv~~v~~~~~~pv~vK~r~-----  152 (326)
                      .+.+.+.++++.+.+ |+|.|||.+  +.|..-  +...-.--+|.  .+.+.+.++++.+++..+.|+.+=.=.     
T Consensus        28 P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~  107 (261)
T d1rd5a_          28 PDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMF  107 (261)
T ss_dssp             SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHS
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchhh
Confidence            467889999998877 899999974  445411  11110001111  356788889999988888887642210     


Q ss_pred             ---------C------CC--hHHHHHHHHHHHHcCCcEEEEeecccC--------------------------CCCCCcC
Q 020428          153 ---------L------KS--SQDTVELARRIEKTGVSALAVHGRKVA--------------------------DRPRDPA  189 (326)
Q Consensus       153 ---------g------~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~--------------------------~~~~~~~  189 (326)
                               |      +|  .++..++...+.+.|.+.|-+..-+..                          .......
T Consensus       108 ~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~  187 (261)
T d1rd5a_         108 RSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPR  187 (261)
T ss_dssp             CCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTH
T ss_pred             HHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCcccccccchhH
Confidence                     1      11  345667777777777777764322110                          0000111


Q ss_pred             CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          190 KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       190 ~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ..+.++++++..++||+..-||.|++|++++. ..|||||+||++++.
T Consensus       188 ~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~-~~gaDGvIVGSaiv~  234 (261)
T d1rd5a_         188 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIA-QWGADGVIIGSAMVR  234 (261)
T ss_dssp             HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred             HHHHHHHhhhccCCCeEEEcCCCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence            24678899999999999999999999999999 589999999999875

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=98.41  E-value=1.3e-07  Score=82.68  Aligned_cols=86  Identities=20%  Similarity=0.307  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .+++++|+.+.+.|+|.+++..-.+.... .+.+++.++++.+.+.+|+.+.|||+|.+++++++ ..||+-|.+|+.++
T Consensus        30 gdP~~~a~~~~~~g~dei~iiDl~~~~~~-~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll-~~Ga~kVii~s~~~  107 (251)
T d1ka9f_          30 GDPVEAARAYDEAGADELVFLDISATHEE-RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLL-LSGADKVSVNSAAV  107 (251)
T ss_dssp             TCHHHHHHHHHHHTCSCEEEEECCSSTTC-HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HHTCSEEEECHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeccccccc-chhHHHHHHHHHhccCcchheeccccCHHHHHHHH-HcCCCEEEECchhh
Confidence            36789999999999999999876555332 34578899999999999999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .||.++.+
T Consensus       108 ~n~~~i~~  115 (251)
T d1ka9f_         108 RRPELIRE  115 (251)
T ss_dssp             HCTHHHHH
T ss_pred             hCHHHHHH
Confidence            99988764

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.40  E-value=2.9e-06  Score=74.29  Aligned_cols=150  Identities=11%  Similarity=0.158  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccC--CCcc--cccccccccccc--CChHHHHHHHHHHhhcc-cCcEEEEecCCCCh
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMG--CPKS--FSVSGGMGAALL--SKPELIHDILTMLKRNL-DVPVTCKIRLLKSS  156 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~g--cP~~--~~~~~~~G~~l~--~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~  156 (326)
                      .+.+...++++.+.+ |+|.|||.+-  -|..  .+...-.--+|.  -+++.+.++++.+++.. ++|+.+=.=  +++
T Consensus        28 P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y--~N~  105 (267)
T d1qopa_          28 PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMY--ANL  105 (267)
T ss_dssp             SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEEC--HHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEee--ccc
Confidence            466788899988766 8999998652  2321  000000001111  25677888888888774 678765331  110


Q ss_pred             H---HHHHHHHHHHHcCCcEEEEeec-------------------------ccC------------C--------CCCC-
Q 020428          157 Q---DTVELARRIEKTGVSALAVHGR-------------------------KVA------------D--------RPRD-  187 (326)
Q Consensus       157 ~---~~~e~a~~l~~~G~d~i~vh~r-------------------------~~~------------~--------~~~~-  187 (326)
                      .   -..++++.+.++|+|++++-.-                         |..            +        +-+| 
T Consensus       106 i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~  185 (267)
T d1qopa_         106 VFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGA  185 (267)
T ss_dssp             HHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCS
T ss_pred             hhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccCCc
Confidence            0   1245666666666666665211                         110            0        0011 


Q ss_pred             -----cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 -----PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 -----~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           ..-.+.++++++..++||+..-||.|++|+.+++ ..|||||+||++++.
T Consensus       186 ~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~-~~~ADGvIVGSAivk  239 (267)
T d1qopa_         186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAV-RAGAAGAISGSAIVK  239 (267)
T ss_dssp             SSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred             ccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence                 1235778999999999999999999999999999 589999999999876

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=8e-06  Score=68.81  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-CChHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQDTVELARR  165 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~~~~e~a~~  165 (326)
                      ...++...+..|++.||+=+          .+|..+-.+.+.+.+-+.++++.++- ..+|.=+  + .+.++....++.
T Consensus        72 k~~e~~~ai~~GA~EiD~V~----------n~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~  140 (211)
T d1ub3a_          72 KALEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEA  140 (211)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEee----------ccchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHH
Confidence            34455555556999999843          35666667889999889999888742 2345433  2 567788899999


Q ss_pred             HHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          166 IEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       166 l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +.++|+|+|--+    .+...+.+..+.++.+++.+  ++.|=++|||+|.+++.+++ +.|++-+--.+|
T Consensus       141 a~~aGadfiKTS----TG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l-~aGa~riGtSs~  206 (211)
T d1ub3a_         141 AIRGGADFLKTS----TGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRML-KAGASRLGTSSG  206 (211)
T ss_dssp             HHHHTCSEEECC----CSSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEETTH
T ss_pred             HHHhccceEEec----CCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHH-HHhhhHhccCcH
Confidence            999999999543    22333456777777777765  57888999999999999999 689986554443

>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Putative dehydratase protein STM2273
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.36  E-value=3.6e-06  Score=74.21  Aligned_cols=142  Identities=12%  Similarity=0.160  Sum_probs=108.3

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccc--------cccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSF--------SVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~--------~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      ..+|+++++.|+.+.+ ||+.+-++.+.+...        ......|...-.+.+.-.+.|+++|+.+  ++++.+-...
T Consensus        24 ~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~  103 (278)
T d2gl5a1          24 LVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHS  103 (278)
T ss_dssp             CCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeecccc
Confidence            3689999999888776 999999987764321        1111122223345566777889999988  5677777777


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.++.++-        .+..+-+++..+++++.+++||.+.-.+.+.+++.++++...+|.+++-
T Consensus       104 ~~~~~~Ai~~~~~L~~~~l~wiE--------ePi~~~d~~~~~~L~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d  175 (278)
T d2gl5a1         104 LLGTNSAIQFAKAIEKYRIFLYE--------EPIHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPD  175 (278)
T ss_dssp             CSCHHHHHHHHHHHGGGCEEEEE--------CSSCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCC
T ss_pred             cccchhhHHHHHHhcccccceec--------ccccccchhhhhhhccccccceecccccCChHHHhhhhccccceeEeec
Confidence            89999999999999999988762        1123458899999999999999999999999999999976667888776


Q ss_pred             c
Q 020428          233 R  233 (326)
Q Consensus       233 r  233 (326)
                      -
T Consensus       176 ~  176 (278)
T d2gl5a1         176 L  176 (278)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=98.32  E-value=1e-05  Score=69.81  Aligned_cols=137  Identities=9%  Similarity=0.116  Sum_probs=107.2

Q ss_pred             cEEEEECCC-CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTS-DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~-~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+...+... .++++.++++.+.+ ||..+-+-+|-.               +++.=.+.++++++.+  +..+.+-..-
T Consensus         7 P~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~---------------~~~~D~~~v~~ir~~~g~~~~l~vDaN~   71 (244)
T d2chra1           7 PIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDVNQ   71 (244)
T ss_dssp             EBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSS---------------CHHHHHHHHHHHHHHTTTTSEEEEECTT
T ss_pred             EEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCC---------------CHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            666667554 45678888888876 999999866421               3444456678888887  5677777777


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.++.++-        .+..+-|++.++++++.+++||.+.-.+.|.+++.++++...+|.|++.
T Consensus        72 ~~~~~~A~~~~~~l~~~~i~~iE--------eP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d  143 (244)
T d2chra1          72 AWDEQVASVYIPELEALGVELIE--------QPVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLK  143 (244)
T ss_dssp             CCCTHHHHHHHHHHHTTTCCEEE--------CCSCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEECCC
T ss_pred             CcchHHHHHHHHHHhhhhHHHHh--------hhhhhccchhhhhhccceeeeeeecccccccchhhhhhhcceeEEEeec
Confidence            89999999999999999987752        2223457999999999999999999999999999999976668999887


Q ss_pred             cchh
Q 020428          233 RGAL  236 (326)
Q Consensus       233 r~~l  236 (326)
                      -.-+
T Consensus       144 ~~~~  147 (244)
T d2chra1         144 LCNM  147 (244)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            5433

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.31  E-value=4e-07  Score=78.78  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +++++|+.+.+.|++.|++..-.+...  ++.+++.++.+.+.+.+||.+.|||+|.+++++++ ..|++-|.+|+.++.
T Consensus        32 dP~~~a~~~~~~ga~~l~i~DLd~~~~--~~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll-~~Ga~kVvi~s~~~~  108 (239)
T d1vzwa1          32 SPLEAALAWQRSGAEWLHLVDLDAAFG--TGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAAL-ATGCTRVNLGTAALE  108 (239)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHT--SCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEeeccccc--ccchHHHHHHHHhhcCcceEeecccccchhhhhhh-ccccccchhhHHhhh
Confidence            578999999999999999987654432  34588999999999999999999999999999999 699999999999999


Q ss_pred             Ccccccc
Q 020428          238 NASIFSS  244 (326)
Q Consensus       238 ~P~lf~~  244 (326)
                      ||.++.+
T Consensus       109 ~~~~~~~  115 (239)
T d1vzwa1         109 TPEWVAK  115 (239)
T ss_dssp             CHHHHHH
T ss_pred             ccccchh
Confidence            9988765

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=1.6e-05  Score=68.53  Aligned_cols=126  Identities=13%  Similarity=0.133  Sum_probs=92.0

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC-CChHHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL-KSSQDTVELARRI  166 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g-~~~~~~~e~a~~l  166 (326)
                      ...++...+..|+|.||+=+          .+|...-.+.+.+.+-++++++.+ +.++-|=+-.+ .+.++....++.+
T Consensus       105 K~~Ea~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia  174 (251)
T d1o0ya_         105 KAHEAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVIS  174 (251)
T ss_dssp             HHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCceEEEEe----------ccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHH
Confidence            34455555556999999843          355566678888988899998887 45444433333 5667788889999


Q ss_pred             HHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          167 EKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       167 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      .++|+|+|--    ..+...+++..+.++.+++.+  ++.|=++|||+|.+++.+++ ..|++-+
T Consensus       175 ~~aGadfvKT----STGf~~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i-~aGa~ri  234 (251)
T d1o0ya_         175 KLAGAHFVKT----STGFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMI-MYGADRI  234 (251)
T ss_dssp             HHTTCSEEEC----CCSSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEE
T ss_pred             HHhCcceeec----cCCCCCCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHH-HHhhHHh
Confidence            9999999843    333334566777777777655  57788999999999999999 6999964

>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Atu3453
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.25  E-value=2.6e-05  Score=67.41  Aligned_cols=136  Identities=14%  Similarity=0.124  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+|+++++.|+.+.+ ||..+-+..|.|...     .    -.+++.-.+.++++|+.+  ++.+.+-...+|+..++++
T Consensus        22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~-----~----~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~   92 (255)
T d1rvka1          22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS-----W----APDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA   92 (255)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCTTST-----T----CCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc-----c----ccCHHHHHHHHHHHHHHcCCccceecccccccccchhhh
Confidence            579999988888766 999999998865431     1    235677778889998887  5667777777899999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHH-HHHHHHHhcCCcEEEeccchhc
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYD-DFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~-d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +++.+++.++.+|-        .+..+-|++..+++++.+++||.+...+.+.. +...+++...+|.+++--+-++
T Consensus        93 ~~~~l~~~~l~~iE--------eP~~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~~~~G  161 (255)
T d1rvka1          93 LGRGLEKLGFDWIE--------EPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVG  161 (255)
T ss_dssp             HHHHHHTTTCSEEE--------CCSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHT
T ss_pred             hhhhcccchhhhhc--------CCcccccHHHHHHHHHhcccceeehhhcccchhhhhhhhhhchhhhccccccccc
Confidence            99999999998872        22244578999999999999999999998875 6678886666898887644333

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=98.19  E-value=3.6e-06  Score=83.12  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=81.2

Q ss_pred             cCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCC--------CcCCHH-HH
Q 020428          125 LSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPR--------DPAKWG-EI  194 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~--------~~~~~~-~i  194 (326)
                      ...++.+.++|..+|+.. +.||+||+-....   ...++..+.++|+|.|+|.|......-.        |.+ |+ .+
T Consensus       579 iysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g---~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP-~~~gl  654 (809)
T d1ofda2         579 IYSIEDLAQLIYDLHQINPEAQVSVKLVAEIG---IGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSP-WELGV  654 (809)
T ss_dssp             CSSHHHHHHHHHHHHHHCTTSEEEEEEECSTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCC-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCceEEEEeeecC---hHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCcc-HHHHH
Confidence            456889999999999876 7899999975332   3345666667999999999886553211        222 33 23


Q ss_pred             HHHHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          195 ADIVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       195 ~~i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .++.+.+       +|.+++.||+.|+.|+.+++ ..|||+|.+||++|.
T Consensus       655 ~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~-aLGAD~v~~gt~~l~  703 (809)
T d1ofda2         655 TEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAA-LMGAEEYGFGSIAMI  703 (809)
T ss_dssp             HHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHH-HTTCSEEECSHHHHH
T ss_pred             HHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHH-HhCCCchhHhHHHHH
Confidence            3333332       69999999999999999999 699999999999984

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Pseudomonas sp. p51 [TaxId: 65067]

Probab=98.17  E-value=4.4e-05  Score=65.51  Aligned_cols=135  Identities=12%  Similarity=0.210  Sum_probs=104.0

Q ss_pred             cEEEEECCCC-HHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTSD-AVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~-~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+...+++.+ +++..++++.+.+ |+..+-+-.|-               .+++.-.+.++++++.+  ++.+.+-..-
T Consensus         7 pv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~v~~ir~~~g~~~~l~vDaN~   71 (243)
T d1nu5a1           7 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA---------------RTPAQDLEHIRSIVKAVGDRASVRVDVNQ   71 (243)
T ss_dssp             EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGCEEEEECTT
T ss_pred             EEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC---------------CCHHHHHHHHHHHHHHhCcccceEEECCC
Confidence            6666776555 4567777777765 99999886542               24555566777777776  4666777766


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.++.++-        .+..+.+++.++++++.+++||.+.-.+.+.+++..+++...+|.+++-
T Consensus        72 ~~~~~~A~~~~~~l~~~~~~~iE--------eP~~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d  143 (243)
T d1nu5a1          72 GWDEQTASIWIPRLEEAGVELVE--------QPVPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSLK  143 (243)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEE--------CCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             CccchhHHHHHHHhcchhhhhhh--------hhhhhccccccccchhccccccccccccccchhhhhccccccccccccc
Confidence            89999999999999999998872        2224457899999999999999999999999999999975558988876


Q ss_pred             cc
Q 020428          233 RG  234 (326)
Q Consensus       233 r~  234 (326)
                      -+
T Consensus       144 ~~  145 (243)
T d1nu5a1         144 LC  145 (243)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Muconate-lactonizing enzyme
species: Pseudomonas putida [TaxId: 303]

Probab=98.16  E-value=3.9e-05  Score=65.80  Aligned_cols=133  Identities=14%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             cEEEEECCCCHH-HHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMGTSDAV-RALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~g~~~~-~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+...++..+++ +..++.+.+.. |+..+-|-+|-+               +++.-.+.++++++.+  ++.+.+-..-
T Consensus         7 pv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~---------------~~~~Di~~i~~ir~~~g~~~~l~vDaN~   71 (242)
T d1muca1           7 EVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGAN---------------PVEQDLKHVVTIKRELGDSASVRVDVNQ   71 (242)
T ss_dssp             EBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred             EEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCC---------------CHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence            676777766665 55677777764 999999876522               2444456677777766  5677777777


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+.++++++++.+++.|+.+|       + .+-.+.+++..+++++.+++||.+...+.|..++..+++...+|.+++-
T Consensus        72 ~~~~~~A~~~~~~l~~~~i~~i-------E-eP~~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d  143 (242)
T d1muca1          72 YWDESQAIRACQVLGDNGIDLI-------E-QPISRINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADGAASIFALK  143 (242)
T ss_dssp             CBCHHHHHHHHHHHHHTTCCCE-------E-CCBCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred             CCcHHHHHHHHHHhhhhhHHHh-------h-cchhhhhhhhhhhhhhhhhheeecccccccccchhhhhhcccccccccc
Confidence            8999999999999999998876       2 2224557999999999999999999999999999999975558888875

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.11  E-value=4.2e-05  Score=65.30  Aligned_cols=127  Identities=12%  Similarity=0.080  Sum_probs=81.4

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIE  167 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~  167 (326)
                      ...++.+.+..|+|.||+=+   +       +|.......+.+.++++..+. .+.++-|-+-.+ .+.++....++...
T Consensus        90 k~~E~~~Ai~~GAdEID~Vi---n-------~~~~~~~~~~ev~~~~~~~~~-~g~~lKVIlEt~~L~~~~i~~a~~~a~  158 (234)
T d1n7ka_          90 KLVEAQTVLEAGATELDVVP---H-------LSLGPEAVYREVSGIVKLAKS-YGAVVKVILEAPLWDDKTLSLLVDSSR  158 (234)
T ss_dssp             HHHHHHHHHHHTCCEEEECC---C-------GGGCHHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEEe---c-------hhhhhhhhHHHHHHHHHHHhc-cCceEEEEEeccccchHHHHHHHHHHH
Confidence            45555555666999999842   1       222222234556666665543 355555555443 46777888889999


Q ss_pred             HcCCcEEEEeecccCCCCCCcCCHHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          168 KTGVSALAVHGRKVADRPRDPAKWGEIADIV---AALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       168 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~---~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++|+|+|-    |..+.+...+..+.+..+.   ...++.|=++|||+|.+|+.+++ ..|++-+-.
T Consensus       159 ~aGadFVK----TSTG~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i-~aGa~rIGt  220 (234)
T d1n7ka_         159 RAGADIVK----TSTGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAV-GAGADIIGT  220 (234)
T ss_dssp             HTTCSEEE----SCCSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHH-HTTCSEEEE
T ss_pred             Hhhhhhee----ecccccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHH-HccCceeec
Confidence            99999984    3333333333434333333   33478999999999999999999 699996433

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.8e-05  Score=68.30  Aligned_cols=138  Identities=11%  Similarity=0.076  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecC--C-CChHHHH-HHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRL--L-KSSQDTV-ELA  163 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~--g-~~~~~~~-e~a  163 (326)
                      ...++.+.+..|+|.||+=.          .+|...-.+.+.+.+-++++++.+ ..++.+|.=+  + .++++.+ ..+
T Consensus        86 K~~E~~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~  155 (250)
T d1p1xa_          86 ALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKAS  155 (250)
T ss_dssp             HHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEee----------cchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHH
Confidence            44555555666999999843          244555556777877788887765 2344455433  2 2334444 456


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-------SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-------~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      +.+.++|+|+|-    |..+...+.+..+.+..+++.+       ++.|=++|||+|++++.+++ ..|++-  +|...+
T Consensus       156 ~ia~~aGadFvK----TSTG~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i-~~ga~~--iG~~~~  228 (250)
T d1p1xa_         156 EISIKAGADFIK----TSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYL-AIADEL--FGADWA  228 (250)
T ss_dssp             HHHHHTTCSEEE----CCCSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHH-HHHHHH--HCTTSC
T ss_pred             HHHHHcCcCeEE----ecCCcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHH-HHHHHH--hCcccc
Confidence            888999999984    3333434455556555444432       58899999999999999999 466653  454443


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                       +|..|+-
T Consensus       229 -~~~~fRi  235 (250)
T d1p1xa_         229 -DARHYRF  235 (250)
T ss_dssp             -STTTBCE
T ss_pred             -ccCceee
Confidence             7888874

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.02  E-value=7.2e-05  Score=64.17  Aligned_cols=114  Identities=7%  Similarity=0.169  Sum_probs=86.6

Q ss_pred             CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeec
Q 020428          100 DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       100 ~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      |+|+|=|-++              + -+++.+.++++..++ .+.-+.|-+.       +.+.+..+.+.|++.|-|.+|
T Consensus       125 GADaiLLI~~--------------~-L~~~~l~~l~~~a~~-lgl~~LvEvh-------~~~El~~a~~~~a~iIGINnR  181 (247)
T d1a53a_         125 GADTVLLIVK--------------I-LTERELESLLEYARS-YGMEPLIEIN-------DENDLDIALRIGARFIGINSR  181 (247)
T ss_dssp             TCSEEEEEGG--------------G-SCHHHHHHHHHHHHT-TTCCCEEEEC-------SHHHHHHHHHTTCSEEEEESB
T ss_pred             hcchhhhhhh--------------h-ccHHHHHHHHHHHHH-HhhhHHhhcC-------CHHHHHHHHhCCCCeEeeecc
Confidence            7787777642              2 255678888777765 3666666663       234456667799999999888


Q ss_pred             ccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          180 KVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       180 ~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      .-.   +-..|.+...++...+  ++++|+-+||.|++|++++. ..|+|+|.||.+++.+|.
T Consensus       182 nL~---t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~-~~G~davLIGeaLmk~~d  240 (247)
T d1a53a_         182 DLE---TLEINKENQRKLISMIPSNVVKVAESGISERNEIEELR-KLGVNAFLIGSSLMRNPE  240 (247)
T ss_dssp             CTT---TCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHH-HTTCCEEEECHHHHHCTT
T ss_pred             Chh---hhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHH-HCCCCEEEECHHHcCCCc
Confidence            654   3345777777777766  68899999999999999988 699999999999999885

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=1.4e-05  Score=69.74  Aligned_cols=146  Identities=13%  Similarity=0.076  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHhhcCCCEEEEccCCCcccccccc------cccccc--CChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           85 SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGG------MGAALL--SKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~------~G~~l~--~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      .+.+...++++.+.+|+|.|||.+  |.+.-..+|      .--+|.  -+.+.+.++++.+|+..+.|+.+=.-  .++
T Consensus        27 P~~~~~~~~l~~l~~gaDiiElGi--PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y--~N~  102 (271)
T d1ujpa_          27 PSREGFLQAVEEVLPYADLLEIGL--PYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTY--LNP  102 (271)
T ss_dssp             SCHHHHHHHHHHHGGGCSSEEEEC--CCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECC--HHH
T ss_pred             CCHHHHHHHHHHHHcCCCEEEeCC--CCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEee--chh
Confidence            366788888888877999999865  432211111      111221  26778889999999888888766331  111


Q ss_pred             ---HHHHHHHHHHHHcCCcEEEEeec-------------------------c-cC----------CC--C-------CC-
Q 020428          157 ---QDTVELARRIEKTGVSALAVHGR-------------------------K-VA----------DR--P-------RD-  187 (326)
Q Consensus       157 ---~~~~e~a~~l~~~G~d~i~vh~r-------------------------~-~~----------~~--~-------~~-  187 (326)
                         .-..++++.+.++|+|++++-.-                         + ..          ..  |       +| 
T Consensus       103 i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~  182 (271)
T d1ujpa_         103 VLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGM  182 (271)
T ss_dssp             HHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC------
T ss_pred             hhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCc
Confidence               11345566666666666654211                         1 10          00  0       01 


Q ss_pred             -----cCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 -----PAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 -----~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                           ..--+.++++++..++||+..=||.+++++.. .  .+||||+||++++.
T Consensus       183 ~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~-~--~~ADGvIVGSAiV~  234 (271)
T d1ujpa_         183 RERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQ-A--AVADGVVVGSALVR  234 (271)
T ss_dssp             ------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHH-H--TTSSEEEECHHHHH
T ss_pred             cccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHH-h--CCCCEEEEcHHHHH
Confidence                 22356788999989999999999999999975 4  38999999999875

>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Bll6730
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.99  E-value=6.3e-05  Score=64.63  Aligned_cols=125  Identities=9%  Similarity=0.075  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      |.+++.+.+.++.+.+ ||..+-+..|.+               +.+.-.+.++++|+.+  ++.+.+-...+|+..+++
T Consensus        18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~---------------~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai   82 (247)
T d1tzza1          18 GKGLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI   82 (247)
T ss_dssp             --CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEEECCCC---------------CHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence            4678988888887766 999999976532               3556677788888876  556777777789999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCC-----cEEEec
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGA-----SSVMAA  232 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Ga-----d~VmiG  232 (326)
                      ++++.+++.++.++-       + +..+-+++.++++++.+++||.+.-.+.+..++..+++ .|+     |.+++.
T Consensus        83 ~~~~~l~~~~i~wiE-------e-P~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~-~~a~~~~~Di~~~d  150 (247)
T d1tzza1          83 AYAKMLRDYPLFWYE-------E-VGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLR-YGGMRPDRDWLQFD  150 (247)
T ss_dssp             HHHHHHTTSCCSEEE-------C-CSCTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHH-HSCCCTTTCEECCC
T ss_pred             HHHhhcchhhhhhhc-------c-ccccccchhhhhhhhccccccccchhhhhhHHHHHHHH-ccCCcCcceeEeec
Confidence            999999999998862       2 22345789999999999999999999999999999995 554     555543

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=97.99  E-value=7.1e-06  Score=69.01  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=61.9

Q ss_pred             HHHHHHHHcCCcEEEEeecccC--CCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          161 ELARRIEKTGVSALAVHGRKVA--DRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      +.+....+.|+|++.+..--..  -....+..|+.++++++..++||++-||| |.+++.+++ .+||+||.+.++++..
T Consensus       110 ~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~-~~Ga~gvAvis~I~~~  187 (206)
T d1xi3a_         110 EEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVL-KTGVDGIAVISAVMGA  187 (206)
T ss_dssp             HHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHH-TTTCSEEEESHHHHTS
T ss_pred             HHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHH-HhCCCEEEEhHHHHCC
Confidence            4466677889999999865221  11234678999999999999999999999 678899999 6999999999998864


Q ss_pred             cc
Q 020428          239 AS  240 (326)
Q Consensus       239 P~  240 (326)
                      +.
T Consensus       188 ~d  189 (206)
T d1xi3a_         188 ED  189 (206)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.97  E-value=0.00029  Score=59.66  Aligned_cols=136  Identities=13%  Similarity=0.179  Sum_probs=103.0

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g  153 (326)
                      |+..-++..+|+++.+.++.+.+ ||..+-+.+|.+               +++.-.+.++++|+++  ++.+.+-..-+
T Consensus         6 ~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~---------------~~~~d~~~i~~ir~~~g~~~~i~vD~N~~   70 (234)
T d1jpma1           6 ETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQG   70 (234)
T ss_dssp             EBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTTC
T ss_pred             eEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHcCchhhhhhhcccc
Confidence            34445566789999888887765 999999987632               3445556677777776  45566666667


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |+.+++.++++.+++.+.+..-+-     + +..+-|++.++++++.+++||.....+.+..+..++++...+|.+++--
T Consensus        71 ~~~~~a~~~~~~le~~~~~i~~~E-----e-P~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~  144 (234)
T d1jpma1          71 WRPKEAVTAIRKMEDAGLGIELVE-----Q-PVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKL  144 (234)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEEE-----C-CSCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECH
T ss_pred             cchHHHHHHHHHHHhccCceeeec-----C-CccccCHHHHHHhhccccceeecccccccchhhhhhhccCCcCeEEEee
Confidence            999999999999998766533331     1 1234578999999999999999999999999999999655589998853

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=3.7e-06  Score=72.58  Aligned_cols=85  Identities=15%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .++.++|+.+++.|+|.+++-.-.+... .++.+...+..+++ ..+|+.+.|||+|.+++++++ ..|++-|.+++.++
T Consensus        30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~-~~~~~~~~~~~~~~-~~~pl~~gGGI~s~~~~~~~~-~~Ga~kVvi~s~~~  106 (241)
T d1qo2a_          30 KDPVELVEKLIEEGFTLIHVVDLSNAIE-NSGENLPVLEKLSE-FAEHIQIGGGIRSLDYAEKLR-KLGYRRQIVSSKVL  106 (241)
T ss_dssp             SCHHHHHHHHHHTTCCCEEEEEHHHHHH-CCCTTHHHHHHGGG-GGGGEEEESSCCSHHHHHHHH-HTTCCEEEECHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEEEecccccc-cCCcchhheehhcc-cccchhhhhhhhhhhhhhhcc-ccccceEecCcccc
Confidence            3688999999999999999876644321 23545666666655 458999999999999999999 69999999999999


Q ss_pred             cCcccccc
Q 020428          237 WNASIFSS  244 (326)
Q Consensus       237 ~~P~lf~~  244 (326)
                      .+|.+...
T Consensus       107 ~~~~~~~~  114 (241)
T d1qo2a_         107 EDPSFLKS  114 (241)
T ss_dssp             HCTTHHHH
T ss_pred             cCchhhhh
Confidence            99987664

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=1.1e-05  Score=67.53  Aligned_cols=145  Identities=16%  Similarity=0.150  Sum_probs=97.3

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c--c-c--cccccccCChHHHHHHHHHHhhcccCc
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V--S-G--GMGAALLSKPELIHDILTMLKRNLDVP  145 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~--~-~--~~G~~l~~~p~~~~~iv~~v~~~~~~p  145 (326)
                      |++.=|.+.++++....++.+.+ |+..+||.+-+|....     +  . .  -.|+.-..+++.+.+.+++=.     .
T Consensus        10 ~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa-----~   84 (202)
T d1wa3a1          10 KIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGA-----E   84 (202)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTC-----S
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcc-----c
Confidence            67777889999999999998887 8999999999987411     1  1 1  145555566776666544322     2


Q ss_pred             EEEEecCCCChH----------------HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428          146 VTCKIRLLKSSQ----------------DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN  208 (326)
Q Consensus       146 v~vK~r~g~~~~----------------~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n  208 (326)
                      +.|  ..+.+.+                .+...+..+.++|++.+-++.-...    |+   .+++.++.-. ++|++..
T Consensus        85 fiv--sP~~~~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~G~~~lK~fPa~~~----G~---~~lk~l~~p~p~i~~ipt  155 (202)
T d1wa3a1          85 FIV--SPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVV----GP---QFVKAMKGPFPNVKFVPT  155 (202)
T ss_dssp             EEE--CSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHH----HH---HHHHHHHTTCTTCEEEEB
T ss_pred             EEe--CCCCcHHHHHHHHhcCCceeCCcCcHHHHHHHHHCCCCEEEecchhhc----CH---HHHHHHhCcccCCcEEee
Confidence            222  2222210                1223344445688888888654211    22   4667776544 7999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ||| |.+++.+.+ ..|+.+|.+|+.+..
T Consensus       156 GGI-~~~n~~~~l-~aga~avg~Gs~l~~  182 (202)
T d1wa3a1         156 GGV-NLDNVCEWF-KAGVLAVGVGSALVK  182 (202)
T ss_dssp             SSC-CTTTHHHHH-HHTCSCEEECHHHHC
T ss_pred             CCC-CHHHHHHHH-HCCCeEEEEchhhcC
Confidence            999 789999999 479999999998763

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=0.00016  Score=63.63  Aligned_cols=207  Identities=14%  Similarity=0.095  Sum_probs=122.7

Q ss_pred             eEEccccCCCCHHHHHHHHHcCCCeEEe-Cc-eecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE--
Q 020428            7 LVLAPMVRVGTLPFRLLAAQYGADITYG-EE-IIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM--   82 (326)
Q Consensus         7 iilAPM~g~t~~~fr~~~~~~G~~l~~t-e~-i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl--   82 (326)
                      .+++|  ++-|..-.+++.+.|...+|| .. +++..+..      .+.+...+.+.  ...+-+.+.....|+++-+  
T Consensus        17 ~~~~~--~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~------pD~~~~~~~e~--~~~~~~i~~a~~~Pvi~D~d~   86 (289)
T d1muma_          17 PLQIV--GTINANHALLAQRAGYQAIYLSGGGVAAGSLGL------PDLGISTLDDV--LTDIRRITDVCSLPLLVDADI   86 (289)
T ss_dssp             SEEEE--ECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCC------CSSSCCCHHHH--HHHHHHHHHHCCSCEEEECTT
T ss_pred             CEEee--cCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCC------CCCCCCChHHH--HHHHHHHhcccCCCeeecccc
Confidence            44545  677888888999999976665 33 22222221      22222211100  0011222334457999988  


Q ss_pred             -CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC----CCh
Q 020428           83 -GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL----KSS  156 (326)
Q Consensus        83 -~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g----~~~  156 (326)
                       +|+++....+.++.+.. |+.+|.|-=. ..++.+....|-.+....+.+..|-.++...-+..+.+--|..    ...
T Consensus        87 GyG~~~~~v~~~v~~~~~aGvagi~iEDq-~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~  165 (289)
T d1muma_          87 GFGSSAFNVARTVKSMIKAGAAGLHIEDQ-VGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGL  165 (289)
T ss_dssp             CSSSSHHHHHHHHHHHHHHTCSEEEEECB-CCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCH
T ss_pred             cccccchHHHHHHHHHHHCCCCEEEecCc-ccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCH
Confidence             46778899999998877 9999988643 2233222223333444444444443333222233344444442    235


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe---CCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN---GDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n---GgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      +++++-++.+.++|+|.|-+++.         .+.+.++++++.+++|+.+|   |+-...-++.++. +.|+..+..|.
T Consensus       166 ~eAi~R~~aY~eAGAD~vf~~~~---------~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~-~~Gv~~v~~~~  235 (289)
T d1muma_         166 DAAIERAQAYVEAGAEMLFPEAI---------TELAMYRQFADAVQVPILANITEFGATPLFTTDELR-SAHVAMALYPL  235 (289)
T ss_dssp             HHHHHHHHHHHHTTCSEEEETTC---------CCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHH-HTTCSEEEESS
T ss_pred             HHHHHHHHHhhhcCCcEEEecCC---------CCHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHH-HhccceEEech
Confidence            68899999999999999988654         25688899999988887643   4433211334555 68999888874


Q ss_pred             c
Q 020428          234 G  234 (326)
Q Consensus       234 ~  234 (326)
                      .
T Consensus       236 ~  236 (289)
T d1muma_         236 S  236 (289)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Mandelate racemase
species: Pseudomonas putida [TaxId: 303]

Probab=97.81  E-value=0.00036  Score=58.90  Aligned_cols=126  Identities=11%  Similarity=0.201  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      ..+++.+.+-++.+.+ ||..+-+..|-+               +++.-.+.++++++.+  +..+.+-..-+|+.+++.
T Consensus        10 ~d~~~~~~e~~~~~~~~G~~~~KikvG~~---------------~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~   74 (227)
T d2mnra1          10 LDGVKLATERAVTAAELGFRAVKTKIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAI   74 (227)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCCEEEEccCCC---------------CHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHH
Confidence            3456666666666555 999999876532               2344456677777776  566777777789999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++.+++.|+.++-       + +..+.+++..+++++.+++||.+.-.+.+.+++..+++...+|.+++-
T Consensus        75 ~~~~~l~~~~~~~iE-------e-P~~~~~~~~~~~l~~~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d  138 (227)
T d2mnra1          75 KRSQALQQEGVTWIE-------E-PTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPD  138 (227)
T ss_dssp             HHHHHHHHHTCSEEE-------C-CSCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred             HHHHHhhhchhhhhc-------C-cccccchhhhHHHHHHcCCccccCceeEeechhhhhHhcCceeeeecc
Confidence            999999999998872       2 223457899999999999999999999999999999976667877664

>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: RTS beta protein
species: Xanthomonas campestris pv. campestris [TaxId: 340]

Probab=97.73  E-value=0.00019  Score=61.72  Aligned_cols=125  Identities=11%  Similarity=0.146  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           84 TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      |.+|+++.+.++.+.+ ||..+-+..|.                +++.-.+.++++|+.+  +..+.+-...+|+..+++
T Consensus        13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~----------------~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~   76 (252)
T d1yeya1          13 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI   76 (252)
T ss_dssp             ---CHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEECCC----------------CHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHH
Confidence            4567888777776655 99999998763                2555567788888876  566777777789999999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ++++.+++.++.+|-        .+..+.|++...++++. .++||.+.=.+.+..++.++++...+|.+++-
T Consensus        77 ~~~~~l~~~~~~~iE--------eP~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d  141 (252)
T d1yeya1          77 DWMRQLAEFDIAWIE--------EPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQID  141 (252)
T ss_dssp             HHHHTTGGGCCSCEE--------CCSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred             HHHHhhhhcCceeec--------CCcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccceeccc
Confidence            999999999998872        12234577777777666 58999999999999999999976668988764

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.00034  Score=57.74  Aligned_cols=139  Identities=14%  Similarity=0.129  Sum_probs=85.0

Q ss_pred             EEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCCh
Q 020428           78 VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSS  156 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~  156 (326)
                      +++-+=-.+.++..+.++.+..++|.+++++  |.-  .  .+|      +    ++++.+++.. +.++....-.....
T Consensus         4 l~vAlD~~~~~~~~~~~~~~~~~vdiikig~--~~~--~--~~G------~----~~i~~l~~~~~~~~i~~d~k~~d~~   67 (213)
T d1q6oa_           4 LQVALDNQTMDSAYETTRLIAEEVDIIEVGT--ILC--V--GEG------V----RAVRDLKALYPHKIVLADAKIADAG   67 (213)
T ss_dssp             EEEEECCSSHHHHHHHHHHHGGGCSEEEECH--HHH--H--HHC------T----HHHHHHHHHCTTSEEEEEEEECSCH
T ss_pred             EEEEecCCCHHHHHHHHHhcCCCccEEEeCe--ecc--c--cCC------H----HHHHHHHHhcccccceeEEeeccch
Confidence            3344434678888888888877899999874  211  1  111      2    3455666543 45665443333322


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccC-----------------------------------CC--------------CCC
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVA-----------------------------------DR--------------PRD  187 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------------------------~~--------------~~~  187 (326)
                         ..+++.+.++|+|.+++|+....                                   ..              ...
T Consensus        68 ---~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  144 (213)
T d1q6oa_          68 ---KILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGV  144 (213)
T ss_dssp             ---HHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTC
T ss_pred             ---HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccCcCCe
Confidence               23456777889999999854220                                   00              000


Q ss_pred             cCCHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          188 PAKWGEIADIVAA--LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       188 ~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ......+.++++.  .++|+...||+. ++++.+++ ..|||.+++||+++.
T Consensus       145 ~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~-~~Gad~iVVGr~I~~  194 (213)
T d1q6oa_         145 AWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFK-GIPIHVFIAGRSIRD  194 (213)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGT-TSCCSEEEESHHHHT
T ss_pred             eCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHH-HcCCCEEEEChhhcC
Confidence            1112233344332  478888888875 88888888 689999999999765

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.60  E-value=0.00019  Score=60.46  Aligned_cols=145  Identities=15%  Similarity=0.213  Sum_probs=95.9

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .+..+|...|...+.+..+.+.+ |+|.  +|+-=|.=+++.   .+|      |    +.++.+++.++.|+.+-+=. 
T Consensus         3 kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~---s~g------~----~~i~~i~~~t~~~~dvHLMv-   68 (217)
T d2flia1           3 KIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNI---SFG------A----DVVASMRKHSKLVFDCHLMV-   68 (217)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB---CBC------H----HHHHHHHTTCCSEEEEEEES-
T ss_pred             EEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCcc---ccC------H----HHHHHHHhcCCCceEeEEEe-
Confidence            36677888888888888887766 7885  466444322221   122      2    35677788788888887643 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccC---------------------------------------------CCCCC-
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVA---------------------------------------------DRPRD-  187 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---------------------------------------------~~~~~-  187 (326)
                      .   ++..+++.+.++|++.|++|.-+..                                             .++.| 
T Consensus        69 ~---~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq  145 (217)
T d2flia1          69 V---DPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ  145 (217)
T ss_dssp             S---SGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC
T ss_pred             c---CHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccccc
Confidence            1   2345667778889999998844321                                             01111 


Q ss_pred             ---cCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          188 ---PAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       188 ---~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                         +..++-++++++.     .+++|..-|||+ .+.+..+. ..|||.+++|++++.++.
T Consensus       146 ~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~-~aGad~~V~Gsaif~~~d  204 (217)
T d2flia1         146 AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACY-EAGANVFVAGSYLFKASD  204 (217)
T ss_dssp             CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHH-HHTCCEEEESHHHHTSSC
T ss_pred             ccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHH-HCCCCEEEEchHHhCCCC
Confidence               2235556666542     368899999996 66788888 699999999999776554

>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Amycolatopsis sp. [TaxId: 37632]

Probab=97.59  E-value=0.00047  Score=58.64  Aligned_cols=129  Identities=12%  Similarity=0.144  Sum_probs=98.1

Q ss_pred             cEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecC
Q 020428           77 HVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRL  152 (326)
Q Consensus        77 p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~  152 (326)
                      |+-..++ +.+++++.+.++...+ ||..+-|..| |             ..|.    +.++++++.+  +..+.+-...
T Consensus         6 pvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-~-------------~~Di----~~i~~ir~~~g~~~~l~vDaN~   67 (242)
T d1sjda1           6 PCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P-------------GWDV----EPVRAVRERFGDDVLLQVDANT   67 (242)
T ss_dssp             EBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T-------------TBSH----HHHHHHHHHHCTTSEEEEECTT
T ss_pred             EeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC-c-------------hhHH----HHHHHHHHHhCCCeeEeecccc
Confidence            6667775 4689988887776655 9999988654 1             1233    3456666655  5667777777


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          153 LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +|+..+++++++ +++.++.+|-        .+..+.|++..+++++.+++||.+.-.+.+..++.++++...+|.+++-
T Consensus        68 ~~~~~~a~~~~~-l~~~~~~~iE--------eP~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d  138 (242)
T d1sjda1          68 AYTLGDAPQLAR-LDPFGLLLIE--------QPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIK  138 (242)
T ss_dssp             CCCGGGHHHHHT-TGGGCCSEEE--------CCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             ccchhhhhHHhh-hhhhhhHHHH--------hhhhhhhHHHHHHHHhccCcccccccccccchhhhhhhhcCccCEEEec
Confidence            899999999886 8999988762        2234558899999999999999999999999999999965558988874

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.57  E-value=0.00018  Score=61.05  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             HHHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccch
Q 020428          160 VELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIADIVA-ALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~i~~-~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                      .+.+..+.+.|+|++.+..--..   .....+..++.+..+++ .+++||++-||| |++++.+++ .+|++||.+.+++
T Consensus       125 ~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~-~~Ga~giAvis~I  202 (226)
T d2tpsa_         125 MSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVI-QAGADGVSMISAI  202 (226)
T ss_dssp             HHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHH-HTTCSEEEESHHH
T ss_pred             hHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHH-HhCCCEEEEhHHh
Confidence            34566777789999998764222   22223345677777764 579999999999 789999999 6999999999998


Q ss_pred             hcCc
Q 020428          236 LWNA  239 (326)
Q Consensus       236 l~~P  239 (326)
                      +..+
T Consensus       203 ~~a~  206 (226)
T d2tpsa_         203 SQAE  206 (226)
T ss_dssp             HTSS
T ss_pred             hcCC
Confidence            8644

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.51  E-value=0.0015  Score=54.95  Aligned_cols=117  Identities=14%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             HHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C-CChHHHHHHHHHHHHcCC
Q 020428           95 KMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L-KSSQDTVELARRIEKTGV  171 (326)
Q Consensus        95 ~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g-~~~~~~~e~a~~l~~~G~  171 (326)
                      +.+.+|+|.||+=+          .+|...-.+.+.+.+-+.++++.++ +..+|.=+  + .+.++....++.+.++|+
T Consensus        74 ~a~~~GAdEID~Vi----------n~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGa  142 (226)
T d1vcva1          74 SRLAEVADEIDVVA----------PIGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGA  142 (226)
T ss_dssp             HHHTTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCeeEEEe----------cHHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCc
Confidence            44556999999842          2444455677788777788887763 23345433  2 566778888899999999


Q ss_pred             cEEEEe-ecccC------CCCCC--cCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHH
Q 020428          172 SALAVH-GRKVA------DRPRD--PAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKT  222 (326)
Q Consensus       172 d~i~vh-~r~~~------~~~~~--~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~  222 (326)
                      |+|--+ |....      ..+.+  +.+...+.++.+..  ++-|=++|||+|.+++.++++
T Consensus       143 dFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~  204 (226)
T d1vcva1         143 HFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVD  204 (226)
T ss_dssp             SEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHH
T ss_pred             ceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHH
Confidence            999542 22110      01111  22333444444433  677889999999999999995

>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Listeria innocua [TaxId: 1642]

Probab=97.45  E-value=0.00071  Score=57.57  Aligned_cols=129  Identities=7%  Similarity=0.187  Sum_probs=96.2

Q ss_pred             cEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC
Q 020428           77 HVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g  153 (326)
                      |+...++ ..+++++.+.++...+ ||..+-+-.|. .             .|    .+.++++|+.+ +..+.+-..-+
T Consensus         6 ~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~-~-------------~D----~~~v~~ir~~~~~~~l~vDaN~~   67 (244)
T d1wufa1           6 KVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP-N-------------KD----IQFVEAVRKSFPKLSLMADANSA   67 (244)
T ss_dssp             EBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT-T-------------BS----HHHHHHHHTTCTTSEEEEECTTC
T ss_pred             EEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC-c-------------HH----HHHHHHHHHhccchhhhhhhhcc
Confidence            5666664 3689988887777655 99999887651 0             12    34677888776 34455555557


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+.+++. .++.+++.++.++       + .+..+-|++..+++++.+++||.+...+.++.++.++++...+|.+++-
T Consensus        68 ~~~~~a~-~~~~l~~~~~~wi-------E-eP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d  137 (244)
T d1wufa1          68 YNREDFL-LLKELDQYDLEMI-------E-QPFGTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLK  137 (244)
T ss_dssp             CCGGGHH-HHHTTGGGTCSEE-------E-CCSCSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             ccchhhh-hhhcccccchhhh-------c-CcccccchhhhhccccccccccccCccccchhhhhhhccccccceeecc
Confidence            8888876 5578999998876       2 2234557899999999999999999999999999999976668998875

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.41  E-value=0.0017  Score=54.04  Aligned_cols=89  Identities=18%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCCh
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSS  156 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~  156 (326)
                      ++++-|=..+.++..+.++.+.+..++|+++.  |.-    ..+|      +    +.++++++..+.||..-+.+.+-.
T Consensus         4 ki~lAlD~~~~~~a~~l~~~~~~~v~~iKig~--~l~----~~~G------~----~~v~~l~~~~~~~i~~D~K~~DIg   67 (212)
T d1km4a_           4 RLILAMDLMNRDDALRVTGEVREYIDTVKIGY--PLV----LSEG------M----DIIAEFRKRFGCRIIADFAVADIP   67 (212)
T ss_dssp             GEEEEECCSSHHHHHHHHHHHTTTCSEEEEEH--HHH----HHHC------T----HHHHHHHHHHCCEEEEEEEECSCH
T ss_pred             CeEEEecCCCHHHHHHHHHHhCCCCcEEEECH--HHH----HhcC------H----HHHHHHHHhcccceehhhhhhccc
Confidence            45555545678888888888877889999864  111    0122      1    346667776677877655555444


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeeccc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKV  181 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~  181 (326)
                      .+....++.+.++|+|.+|||+...
T Consensus        68 ~t~~~~~~~~~~~gad~~TVh~~~g   92 (212)
T d1km4a_          68 ETNEKICRATFKAGADAIIVHGFPG   92 (212)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEESTTC
T ss_pred             cHHHHhHhhhccccccEEEEeccCC
Confidence            5556777888899999999996543

>d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.39  E-value=0.00067  Score=57.72  Aligned_cols=129  Identities=12%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             cEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC
Q 020428           77 HVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g  153 (326)
                      |+-..++ ..+++.+.+.++...+ ||..+-+-.| |         +    .|.    +.++++|+.+ +..+.+-...+
T Consensus         6 ~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg-~---------~----~D~----~~v~~ir~~~~d~~l~vD~n~~   67 (243)
T d1r0ma1           6 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P---------G----WDV----QPVRATREAFPDIRLTVDANSA   67 (243)
T ss_dssp             EBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T---------T----BSH----HHHHHHHHHCTTSCEEEECTTC
T ss_pred             EeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-c---------c----hhH----HHHHHHHHhccCceEEEecccc
Confidence            4555554 4688888777776654 9998888654 1         1    133    3456666665 55566666667


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      |+..++..+ +.+++.++.+|-        .+..+.+++..+++++.+++||.+.-.+.+..++..+++...+|.+++-
T Consensus        68 ~~~~~a~~~-~~l~~~~~~~iE--------eP~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d  137 (243)
T d1r0ma1          68 YTLADAGRL-RQLDEYDLTYIE--------QPLAWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINLK  137 (243)
T ss_dssp             CCGGGHHHH-HTTGGGCCSCEE--------CCSCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred             CchHHHHHh-hhhhhccchhhh--------hhccccchHHHHHHhhcCCcccccccchhhhhhhhhhhhcccccceecc
Confidence            888887775 778888887752        1223457899999999999999999999999999999976678988774

>d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein YitF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.38  E-value=0.0014  Score=56.24  Aligned_cols=122  Identities=11%  Similarity=0.121  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhh-cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHH
Q 020428           88 VRALTAAKMVC-KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        88 ~~~~~aa~~~~-~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      +++.+.++.+. +||..+-+..|-               .+++.-.+.++++|+.+  ++++.+-...+|+.++++++++
T Consensus        23 ~~~~~~~~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A~~~~~   87 (256)
T d2gdqa1          23 SRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWER   87 (256)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHHHHHHH
Confidence            44444444443 499999986541               23455567788888876  5778888887899999999999


Q ss_pred             HHHHc-CCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          165 RIEKT-GVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       165 ~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+++. ++.++-        .+..+-|++..+++++.+++||.+.=.+.+.+++.++++...+|.+++-
T Consensus        88 ~l~~~~~i~~~E--------eP~~~~d~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d  148 (256)
T d2gdqa1          88 YFSEWTNIGWLE--------EPLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPD  148 (256)
T ss_dssp             HHTTCSCEEEEE--------CCSCSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             HHhhcCceeEec--------cccccchHHHHHHHhhcccceeecCccccchhhHHHHHHhhcceeeecc
Confidence            99884 566652        1223458899999999999999888889999999999976567877664

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=97.37  E-value=0.0025  Score=55.35  Aligned_cols=209  Identities=14%  Similarity=0.107  Sum_probs=117.0

Q ss_pred             CceEEccccCCCCHHHHHHHHHcCCCeEEeC-ceecccccccccccccccCcccccccCCcceeeecccCCCCcEEEEE-
Q 020428            5 NKLVLAPMVRVGTLPFRLLAAQYGADITYGE-EIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQERNHVVFQM-   82 (326)
Q Consensus         5 ~~iilAPM~g~t~~~fr~~~~~~G~~l~~te-~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vQl-   82 (326)
                      +.+++.|  ++-|.--.+++.+.|+..++|- .-.+..+..      .+.+...+.+.  ...+-+.+.....|+++-+ 
T Consensus        15 ~~~~~~p--~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~------pD~~~lt~~e~--~~~~~~I~~~~~lPv~~D~d   84 (275)
T d1s2wa_          15 KDLEFIM--EAHNGLSARIVQEAGFKGIWGSGLSVSAQLGV------RDSNEASWTQV--VEVLEFMSDASDVPILLDAD   84 (275)
T ss_dssp             SSCEEEE--EECSHHHHHHHHHHTCSCEEECCHHHHHTC---------------CHHH--HHHHHHHHHTCSSCEEEECC
T ss_pred             CCCEEee--cCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCC------CCCCccchhhH--HHHHHhhhcccCCceeEecc
Confidence            3456666  7778888889999999777654 222222211      22222211100  0111223344557999988 


Q ss_pred             -CCCCHHHHHHHHHHhhc-CCCEEEEccC-CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-----CC
Q 020428           83 -GTSDAVRALTAAKMVCK-DVAAIDINMG-CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-----LK  154 (326)
Q Consensus        83 -~g~~~~~~~~aa~~~~~-~~d~idlN~g-cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-----g~  154 (326)
                       +-.++....+.++.+.+ |+.+|.|.=. .|...--..+....+....+....+..+.....+.++.+--|.     +.
T Consensus        85 ~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~  164 (275)
T d1s2wa_          85 TGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGW  164 (275)
T ss_dssp             SSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTC
T ss_pred             cccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcC
Confidence             22368889999888877 9999998642 2321111112112233333344444444444444554444444     23


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH--hcCCcEEEeC---CCCCHHHHHHHHHhcCCcEE
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA--ALSIPVIANG---DVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~--~~~iPVi~nG---gI~s~~d~~~~l~~~Gad~V  229 (326)
                      ..+++++-++.+.++|+|.|-+++.+..        .+.+..+..  ...+|+.+|.   +-.+.   .++. +.|+..|
T Consensus       165 gl~eai~R~~aY~eAGAD~vf~~~~~~~--------~~~~~~~~~~~~~~~pl~~~~~~~~~~~~---~eL~-~lGv~~v  232 (275)
T d1s2wa_         165 GLDEALKRAEAYRNAGADAILMHSKKAD--------PSDIEAFMKAWNNQGPVVIVPTKYYKTPT---DHFR-DMGVSMV  232 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCSSS--------SHHHHHHHHHHTTCSCEEECCSTTTTSCH---HHHH-HHTCCEE
T ss_pred             CHHHHHHHHHHHHhcCCCeeeeccccCc--------HHHHHHHHHhhcCCCCEEEecccccccHH---HHHH-HcCCCEE
Confidence            4688999999999999999999887432        233333333  3578888874   33343   3444 6899988


Q ss_pred             Eeccch
Q 020428          230 MAARGA  235 (326)
Q Consensus       230 miGr~~  235 (326)
                      ..|-.+
T Consensus       233 ~~g~~~  238 (275)
T d1s2wa_         233 IWANHN  238 (275)
T ss_dssp             EECSHH
T ss_pred             EEchHH
Confidence            887553

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.19  E-value=0.0075  Score=49.67  Aligned_cols=138  Identities=22%  Similarity=0.216  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      -.+.++..+.++.+.+..++|+++.  |.-  .  .+|      +    +.++++++..+.+|..-+.+.+-+.+....+
T Consensus         8 ~~~~~~a~~~~~~l~~~v~~iKvG~--~l~--~--~~G------~----~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~   71 (206)
T d2czda1           8 VYEGERAIKIAKSVKDYISMIKVNW--PLI--L--GSG------V----DIIRRLKEETGVEIIADLKLADIPNTNRLIA   71 (206)
T ss_dssp             CCSHHHHHHHHHHHGGGCSEEEEEH--HHH--H--HHC------T----THHHHHHHHHCCEEEEEEEECSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCcccEEEECH--HHH--h--hcC------H----HHHHHHHHhcCCeEEEEeeeeeecccchhee
Confidence            4567788888888777889999874  111  0  112      1    3466666656788877666554444555677


Q ss_pred             HHHHHcCCcEEEEeecccCC---------------CCC-----------------------------CcCCHHHHHHHHH
Q 020428          164 RRIEKTGVSALAVHGRKVAD---------------RPR-----------------------------DPAKWGEIADIVA  199 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~---------------~~~-----------------------------~~~~~~~i~~i~~  199 (326)
                      +.+.++|+|.+|||+.....               ..+                             +....+.+..+++
T Consensus        72 ~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~  151 (206)
T d2czda1          72 RKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYIRD  151 (206)
T ss_dssp             HHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSSTHHHHHHHH
T ss_pred             hhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccHHHHHHHHHHHhcccccccccccCchhhhhhhh
Confidence            88889999999999653210               000                             0112233445554


Q ss_pred             hcC-CcEEEeCCCCC-HHHHHHHHHhcCCcEEEeccchhcC
Q 020428          200 ALS-IPVIANGDVFE-YDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       200 ~~~-iPVi~nGgI~s-~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ..+ --.+..+||.. ..+..+.+ ..|+|.+++||++...
T Consensus       152 ~~~~~~~i~~pGI~~~~~~~~~ai-~~Gad~iVvGR~I~~a  191 (206)
T d2czda1         152 RLKEGIKILAPGIGAQGGKAKDAV-KAGADYIIVGRAIYNA  191 (206)
T ss_dssp             HSCTTCEEEECCCCSSTTHHHHHH-HHTCSEEEECHHHHTS
T ss_pred             hhcccceEECCCccccCCCHHHHH-HhCCCEEEEChhhccC
Confidence            442 11345555543 34566677 5899999999998763

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.17  E-value=0.0013  Score=56.37  Aligned_cols=137  Identities=11%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             HHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHH---HHHhhcc-cCcEEEEecCC-CChHHHHHHH
Q 020428           89 RALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDIL---TMLKRNL-DVPVTCKIRLL-KSSQDTVELA  163 (326)
Q Consensus        89 ~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv---~~v~~~~-~~pv~vK~r~g-~~~~~~~e~a  163 (326)
                      ...++-+.++.|+|.||+=+          .+|...-.+.+.+.+.+   ..+++.+ +.++-|=+-.+ .+.++.+..+
T Consensus        87 K~~Ea~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~~e~i~~~  156 (256)
T d2a4aa1          87 VLNDTEKALDDGADEIDLVI----------NYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKT  156 (256)
T ss_dssp             HHHHHHHHHHHTCSEEEEEC----------CHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEec----------cHHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCcHHHHHHH
Confidence            44555555666999999832          23333333445555544   4444443 34443333322 2334444444


Q ss_pred             H-HHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh------------cCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          164 R-RIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA------------LSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       164 ~-~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~------------~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      . ...++|+|+|    .|..+...+.+..+.+..+++.            -++.|=++|||+|.+++.+++ ..|++.+ 
T Consensus       157 ~~~~~~aGadFV----KTSTG~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i-~~g~~~l-  230 (256)
T d2a4aa1         157 TLAVLNGNADFI----KTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYI-LLARRFL-  230 (256)
T ss_dssp             HHHHHTTTCSEE----ECCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHH-HHHHHHT-
T ss_pred             HHHHHhcccHHH----HhccCCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHH-HHHHHhc-
Confidence            4 4568999998    3444333344444444333322            267899999999999999999 5676642 


Q ss_pred             eccchhcCccccc
Q 020428          231 AARGALWNASIFS  243 (326)
Q Consensus       231 iGr~~l~~P~lf~  243 (326)
                       |-.. .+|..|+
T Consensus       231 -G~~~-~~~~~fR  241 (256)
T d2a4aa1         231 -SSLA-CHPDNFR  241 (256)
T ss_dssp             -C-------CCEE
T ss_pred             -cccc-ccCCcee
Confidence             3222 2666665

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.0027  Score=54.09  Aligned_cols=135  Identities=12%  Similarity=0.147  Sum_probs=91.2

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .|+.--=|--|+-+..++..   -|+|+|=|-..+               -+++.+.++++...+ .+.-+.|-+.    
T Consensus       102 ~PiLrKDFIid~~QI~ea~~---~GADaiLLI~~~---------------L~~~~l~~l~~~a~~-lgle~LvEvh----  158 (251)
T d1i4na_         102 RPILAKDFYIDTVQVKLASS---VGADAILIIARI---------------LTAEQIKEIYEAAEE-LGMDSLVEVH----  158 (251)
T ss_dssp             SCEEEECCCCSTHHHHHHHH---TTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCEEEEEEC----
T ss_pred             CchhhhhhhhCHHHHHHHHh---hccceEEeeccc---------------ccHHHHHHHHHHHHH-hCCeeecccC----
Confidence            35444334455555554332   377888775432               245677777776654 4777777774    


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                        +..|+-+.+...|++.|-|.+|.-...   ..|.+...++...+  +..+|+-+||.|++|+..+ + .|+|+|.||.
T Consensus       159 --~~~El~~al~~~~a~iiGINnRdL~t~---~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~-~G~davLIG~  231 (251)
T d1i4na_         159 --SREDLEKVFSVIRPKIIGINTRDLDTF---EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL-R-GKVNAVLVGT  231 (251)
T ss_dssp             --SHHHHHHHHTTCCCSEEEEECBCTTTC---CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH-T-TTCSEEEECH
T ss_pred             --CHHHHHHHhcccccceeeeeecchhcc---chhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-H-hCCCEEEECh
Confidence              334455566667899999999965533   33455566666655  6789999999999999764 3 6999999999


Q ss_pred             chhcCcc
Q 020428          234 GALWNAS  240 (326)
Q Consensus       234 ~~l~~P~  240 (326)
                      ++|..+.
T Consensus       232 sLm~~~~  238 (251)
T d1i4na_         232 SIMKAEN  238 (251)
T ss_dssp             HHHHCSS
T ss_pred             HHhCCCC
Confidence            9998654

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=97.11  E-value=0.0059  Score=52.24  Aligned_cols=157  Identities=15%  Similarity=0.168  Sum_probs=97.8

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCccc----ccccCCcceeeecccCCCCcEEEEE-CC---
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTD----FVEKGTDSVVFRTCHQERNHVVFQM-GT---   84 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~vQl-~g---   84 (326)
                      ...-|+++..++.++|+|++..+.....-+.       .+..+..    ..-.+++. +.+-  ....-+++.+ ++   
T Consensus        20 lTayd~~~A~~ae~agiDiilVGDSlgm~~~-------G~~~T~~vt~d~mi~h~~a-V~rg--a~~~~~i~dmPf~sy~   89 (260)
T d1o66a_          20 LTAYESSFAALMDDAGVEMLLVGDSLGMAVQ-------GRKSTLPVSLRDMCYHTEC-VARG--AKNAMIVSDLPFGAYQ   89 (260)
T ss_dssp             EECCSHHHHHHHHHTTCCEEEECTTHHHHTT-------CCSSSTTCCHHHHHHHHHH-HHHH--CSSSEEEEECCTTSSS
T ss_pred             EeCCCHHHHHHHHHcCCCEEEEcCCchheec-------CCCCccccchhhhhhhhHH-HHcc--Ccceeeecchhhhhhc
Confidence            4456899999999999999977532211110       0000100    00000000 0010  1122355555 33   


Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC----------
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL----------  153 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g----------  153 (326)
                      +..+...+++.++.+ |+|.|-+..|.                   ...++++++.+. ++||.-=+.+-          
T Consensus        90 ~~~~~~~~a~~~~~~~gadavk~eg~~-------------------~~~~~i~~l~~~-gIPV~gHiGl~Pq~~~~~gG~  149 (260)
T d1o66a_          90 QSKEQAFAAAAELMAAGAHMVKLEGGV-------------------WMAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGY  149 (260)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECSG-------------------GGHHHHHHHHHT-TCCEEEEEESCGGGTTC----
T ss_pred             chhHHHHHHHHHHHHhhhhhccccchh-------------------hhhHHHHHHHHc-CCeeEeecccccchheecCcc
Confidence            456788888877766 99999886432                   223567777665 89988766541          


Q ss_pred             ------CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          154 ------KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       154 ------~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                            .+.....+.|+.++++|+.+|.+-.-          .-++.++|.+.+++|+|+-|
T Consensus       150 r~~Gk~~e~~~l~~~a~~le~AGa~~ivlE~V----------p~~va~~It~~~~iptIgIG  201 (260)
T d1o66a_         150 KVQGRGGKAQALLNDAKAHDDAGAAVVLMECV----------LAELAKKVTETVSCPTIGIG  201 (260)
T ss_dssp             -------CHHHHHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHCSSCEEEES
T ss_pred             eeccccchhHHHHHHHHHHHHhhhhehhhhhc----------cHHHHHHHHhhhcceeeecc
Confidence                  12345788899999999999998754          24677899999999999877

>d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.06  E-value=0.0026  Score=53.76  Aligned_cols=131  Identities=12%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             cEEEEEC-CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCC
Q 020428           77 HVVFQMG-TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~-g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g  153 (326)
                      |+.+.++ +.+++++.+.++.+.+ ||..+-+..| |             ..|.+    .++++|+.+ +..+.+-..-+
T Consensus         6 pv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg-~-------------~~D~~----~v~~ir~~~~d~~l~vDaN~~   67 (241)
T d1wuea1           6 PVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDVE----PVALIRQHFPNLPLMVDANSA   67 (241)
T ss_dssp             ECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHH----HHHHHHHHCTTSCEEEECTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcC-c-------------cHHHH----HHHHHHHhccccceeeccccc
Confidence            6666664 3577777776666554 9999988764 1             12333    355566655 55666666667


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEecc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |+.+++..+. .+.+.++.+|       ++ +-.+-+++.++++++..++||.+.-.+.+..++..+++...+|.+++--
T Consensus        68 ~~~~~a~~~~-~~~~~~i~~i-------Ee-P~~~~~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~  138 (241)
T d1wuea1          68 YTLADLPQLQ-RLDHYQLAMI-------EQ-PFAADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLKI  138 (241)
T ss_dssp             CCGGGHHHHH-GGGGSCCSCE-------EC-CSCTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred             CCHHHhhhhh-hhhhhhhhhh-------cC-cccccchhhhhhhhcccccccccCcccccchhhhhhhhhhhhhhhcccc
Confidence            8888887764 4567777664       11 1234478899999999999999999999999999999766689998864


Q ss_pred             c
Q 020428          234 G  234 (326)
Q Consensus       234 ~  234 (326)
                      +
T Consensus       139 ~  139 (241)
T d1wuea1         139 P  139 (241)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.0016  Score=55.72  Aligned_cols=101  Identities=10%  Similarity=0.118  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEEe
Q 020428          131 IHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIAN  208 (326)
Q Consensus       131 ~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~n  208 (326)
                      +.++++.. ...+.-+.|.+.       ..+.+..+.+.|++.|-|.+|.-............+..+...  .++.+|+.
T Consensus       143 l~~l~~~A-~~lgl~~LVEvh-------~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsE  214 (254)
T d1vc4a_         143 TGAYLEEA-RRLGLEALVEVH-------TERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAE  214 (254)
T ss_dssp             HHHHHHHH-HHHTCEEEEEEC-------SHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHH-HHhCCceEEEec-------cHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEc
Confidence            34555443 335777778774       233456667889999999999766443333223333333332  26779999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      +||.|++|+.. ++ .|+|+|.||.++|.+|+.
T Consensus       215 SGI~~~~dv~~-l~-~g~davLIGesLm~~~d~  245 (254)
T d1vc4a_         215 SGYSRKEELKA-LE-GLFDAVLIGTSLMRAPDL  245 (254)
T ss_dssp             SCCCSHHHHHT-TT-TTCSEEEECHHHHTSSCH
T ss_pred             cCCCCHHHHHH-HH-cCCCEEEEChhhcCCCCH
Confidence            99999999865 43 699999999999987763

>d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: D-glucarate dehydratase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0051  Score=54.15  Aligned_cols=127  Identities=9%  Similarity=0.092  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHhh-c-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVC-K-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~-~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e  161 (326)
                      .+|+.+++.|+.+. + ||..+-|-.|-               ..++.-.+.++++++++ +..+.+-...+|+.+++++
T Consensus        46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~  110 (309)
T d1jdfa1          46 MTPDAVVRLAEAAYEKYGFNDFKLKGGV---------------LAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIK  110 (309)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSCEEEECSS---------------SCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEECCC---------------CCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHH
Confidence            47888888887765 3 99988886541               23555667788888887 5566666666799999999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      +++.++ .++.++-    ..-.........+..+++++.+++||.+.-.+.+..++.++++...+|.++.
T Consensus       111 ~~~~le-~~l~w~E----EPv~~~d~~~~~~~l~~lr~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~  175 (309)
T d1jdfa1         111 IGKYLK-GSLAYAE----DPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLA  175 (309)
T ss_dssp             HHHHTT-TTCSCEE----SCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBC
T ss_pred             HHHHHh-hcchhhh----hhcccCcchhhHHHHHHhhcccccceecCcccchhhhhhhhhhhccceeeec
Confidence            999886 5777652    0000001112357788999999999999999999999999997656775544

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=97.01  E-value=0.0024  Score=53.74  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC--cCCHHHH----HHHHHh-cC
Q 020428          130 LIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRD--PAKWGEI----ADIVAA-LS  202 (326)
Q Consensus       130 ~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i----~~i~~~-~~  202 (326)
                      .+.+.+...++. ++.+.+-+.   ++    +.++...+.+.+.|.+-+.-.-+....  +.+.+.+    +.+++. -+
T Consensus       102 e~~~~~~~~~~~-gl~~ivcvg---e~----~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~  173 (226)
T d1w0ma_         102 DLARLVAKAKSL-GLDVVVCAP---DP----RTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPE  173 (226)
T ss_dssp             HHHHHHHHHHHT-TCEEEEEES---SH----HHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTT
T ss_pred             chHHHHHHHHHc-CCEEEEecC---ch----HHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCC
Confidence            355556655544 555555442   22    234556678888888876644332211  2233333    333333 37


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccccc
Q 020428          203 IPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFS  243 (326)
Q Consensus       203 iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~  243 (326)
                      +||++.|||.+.+++..++ +.|+|||.||++.+..++.|.
T Consensus       174 i~vlygGgV~~~n~~~~~~-~~g~dGvLVGsA~l~a~d~~~  213 (226)
T d1w0ma_         174 VSVITGAGIESGDDVAAAL-RLGTRGVLLASAAVKAKDPYA  213 (226)
T ss_dssp             SEEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHTCSSHHH
T ss_pred             ceEEEecCcCChHHHHHHh-cCCCCEEEechheecCCCHHH
Confidence            9999999999999999999 689999999999997665444

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.011  Score=50.40  Aligned_cols=158  Identities=17%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             ccCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCccee---eeccc-CCCCcEEEEE-CC--
Q 020428           12 MVRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVV---FRTCH-QERNHVVFQM-GT--   84 (326)
Q Consensus        12 M~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~p~~vQl-~g--   84 (326)
                      |...-|.++..++.+.|+|++..+-....-+.       .+-.|....   .+.++   -.... ....-+++-+ ++  
T Consensus        19 ~lTayD~~~A~~~~~agvDiiLVGDSlgmv~~-------G~~~T~~vt---~d~mi~H~~aV~rga~~~~vv~DmPf~sy   88 (262)
T d1m3ua_          19 TITAYDYSFAKLFADEGLNVMLVGDSLGMTVQ-------GHDSTLPVT---VADIAYHTAAVRRGAPNCLLLADLPFMAY   88 (262)
T ss_dssp             EEECCSHHHHHHHHHHTCCEEEECTTHHHHTT-------CCSSSTTCC---HHHHHHHHHHHHHHCTTSEEEEECCTTSS
T ss_pred             EEEcCCHHHHHHHHHCCCCEEEEcCcHHhccc-------CCCCcceec---hHhHHHHHHHHHhccccceeEeccccccc
Confidence            35567999999999999999976522211110       110111000   00000   00001 1122344444 33  


Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-----------
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-----------  152 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-----------  152 (326)
                      .+.++..+.|..+.+ |+|.|-|..|.                   ...++++++.+. ++||..=+.+           
T Consensus        89 ~~~~~a~~~a~~l~~~GAdaVKlEgg~-------------------~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~  148 (262)
T d1m3ua_          89 ATPEQAFENAATVMRAGANMVKIEGGE-------------------WLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGY  148 (262)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEECCCSG-------------------GGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSS
T ss_pred             hhhHHHHHHHHHHHhcCCcEEEeccch-------------------hHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCc
Confidence            245566666666555 99999886431                   124567888766 8999887765           


Q ss_pred             ---CCCh---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          153 ---LKSS---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       153 ---g~~~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                         |.+.   ....+.|+.++++|+.+|.+-+-          .-++.++|.+.++||+|+-|
T Consensus       149 r~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~v----------p~~va~~It~~~~IPtIGIG  201 (262)
T d1m3ua_         149 KVQGRGDEAGDQLLSDALALEAAGAQLLVLECV----------PVELAKRITEALAIPVIGIG  201 (262)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHTCCEEEEESC----------CHHHHHHHHHHCSSCEEEES
T ss_pred             cccCccHHHHHHHHHHHHHHHhhcceEEEEecc----------cHHHHHHHHhhhcceeEeec
Confidence               2232   35778899999999999998754          25677889999999999877

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0031  Score=53.74  Aligned_cols=101  Identities=12%  Similarity=0.253  Sum_probs=74.4

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      +++.+.++++..++ .+.-+.|-+.       ..+.+..+.+.|++.|-|.+|.-...   ..|.+...++...+  +..
T Consensus       142 ~~~~l~~l~~~a~~-lgl~~LVEvh-------~~~El~~a~~~~a~iIGINnRnL~tf---~vd~~~t~~L~~~ip~~~~  210 (254)
T d1piia2         142 DDDQYRQLAAVAHS-LEMGVLTEVS-------NEEEQERAIALGAKVVGINNRDLRDL---SIDLNRTRELAPKLGHNVT  210 (254)
T ss_dssp             CHHHHHHHHHHHHH-TTCEEEEEEC-------SHHHHHHHHHTTCSEEEEESEETTTT---EECTHHHHHHHHHHCTTSE
T ss_pred             cccHHHHHHHHHHH-HhhhHHHhhc-------cHHHHHHHHhhcccccCccccchhhh---hhhhHHHHHHHHhCCCCCE
Confidence            45677777777654 4777777663       23345666678999999999865532   34666666666655  677


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +++-+||.|++|+..+ . .|+|+|.||.+++..|.
T Consensus       211 ~VsESGI~~~~d~~~l-~-~g~davLiGeslm~~~d  244 (254)
T d1piia2         211 VISESGINTYAQVREL-S-HFANGFLIGSALMAHDD  244 (254)
T ss_dssp             EEEESCCCCHHHHHHH-T-TTCSEEEECHHHHTCSC
T ss_pred             EEEcCCCCCHHHHHHH-H-cCCCEEEEChHHhCCCC
Confidence            8999999999999765 3 69999999999998765

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.013  Score=50.81  Aligned_cols=109  Identities=19%  Similarity=0.233  Sum_probs=75.5

Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecC-CC-------C-----hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc--CC
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRL-LK-------S-----SQDTVELARRIEKTGVSALAVHGRKVADRPRDP--AK  190 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~-g~-------~-----~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~--~~  190 (326)
                      .|-+...++++..... +++|-.-+.. +.       +     ..++.+..+.+++.|+|.|.+.-.|..+.|.+.  .|
T Consensus       111 eNi~~t~~vv~~ah~~-gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~  189 (284)
T d1gvfa_         111 ENVKLVKSVVDFCHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKID  189 (284)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCC
T ss_pred             HHHHHHHHHHHHHHhh-ccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccc
Confidence            4455566666666443 6666555543 10       0     013456666677899999998777776666653  47


Q ss_pred             HHHHHHHHHhcCCcEEEeCCCCCH-HHHHHHHHhcCCcEEEeccchh
Q 020428          191 WGEIADIVAALSIPVIANGDVFEY-DDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       191 ~~~i~~i~~~~~iPVi~nGgI~s~-~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      ++.+++|++.+++|++.-||=..+ +++.+++ ..|+.-|=|++.+-
T Consensus       190 ~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai-~~Gi~KiNi~T~l~  235 (284)
T d1gvfa_         190 FQRLAEIREVVDVPLVLHGASDVPDEFVRRTI-ELGVTKVNVATELK  235 (284)
T ss_dssp             HHHHHHHHHHCCSCEEECCCTTCCHHHHHHHH-HTTEEEEEECHHHH
T ss_pred             cchhhhhhccccCCeEeeCCCCCCHHHHHHHH-HcCeEEEEechHHH
Confidence            899999999999999988776554 5567777 69999999998753

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.011  Score=49.67  Aligned_cols=87  Identities=10%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .|+++-|=..+.+++.+.++.+.+..+++.++.  |.            +  ...-.++++.+++ .+.+|+.-+.+.+-
T Consensus         4 ~~iivALD~~~~~eal~i~~~l~~~i~~iKiG~--~l------------~--~~~G~~~i~~l~~-~~~~if~D~K~~DI   66 (231)
T d1eixa_           4 SPVVVALDYHNRDDALAFVDKIDPRDCRLKVGK--EM------------F--TLFGPQFVRELQQ-RGFDIFLDLKFHDI   66 (231)
T ss_dssp             CCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEH--HH------------H--HHHHHHHHHHHHH-TTCCEEEEEEECSC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhCCcceEEEECH--HH------------H--hhcCHHHHHHHHh-cCchhhHhhHhhcC
Confidence            478887766778888877777655778999863  21            1  1122355667765 46777776655555


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeec
Q 020428          156 SQDTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      +.+....++.+.+.|+++++||+-
T Consensus        67 ~nt~~~~~~~~~~~~~~~~tvh~~   90 (231)
T d1eixa_          67 PNTAAHAVAAAADLGVWMVNVHAS   90 (231)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEBGG
T ss_pred             cHHHHHHHHhhhcccceEEEEecc
Confidence            556666778888899999999965

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=96.89  E-value=0.011  Score=51.15  Aligned_cols=126  Identities=15%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+-++.+.+ |++++=++.+          .|-...-..+.-.++++.+.+.+  ++||.+-+. +.+..++++
T Consensus        21 iD~~~~~~~i~~l~~~Gv~gl~~~G~----------tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~i~   89 (292)
T d1xkya1          21 IDFAKTTKLVNYLIDNGTTAIVVGGT----------TGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHASID   89 (292)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECeE----------ccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC-cccHHHHHH
Confidence            467788888887765 9999988742          34444445666666777776655  578887664 356788999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE-e-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA-N-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~d~~~~l~  222 (326)
                      +++.++++|+|++.+..-.-.. .+...-+++++++.+++++||+. |     |.-.+++.+.++.+
T Consensus        90 ~a~~a~~~Gad~ilv~pP~~~~-~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~  155 (292)
T d1xkya1          90 LTKKATEVGVDAVMLVAPYYNK-PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE  155 (292)
T ss_dssp             HHHHHHHTTCSEEEEECCCSSC-CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCCCCCC-CCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc
Confidence            9999999999999987432111 11122356677888888999874 3     55567777777653

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=96.89  E-value=0.0037  Score=52.74  Aligned_cols=144  Identities=15%  Similarity=0.196  Sum_probs=95.7

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCC--EEEEccC--CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEe
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVA--AIDINMG--CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d--~idlN~g--cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~  150 (326)
                      -.+..+|.+.|...+.+..+.+.+ |+|  .|||-=|  +|.-     .+|          .++++.+++.+++|+.+=+
T Consensus        11 ~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----t~~----------~~~v~~i~~~t~~~~dvHL   75 (230)
T d1rpxa_          11 IIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-----TIG----------PLVVDSLRPITDLPLDVHL   75 (230)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----CCC----------HHHHHHHGGGCCSCEEEEE
T ss_pred             eEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc-----ccC----------hHHHhhhhhccCceeeeee
Confidence            357788999999889888888866 777  4566434  3433     122          2457777777788887766


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccC-----------------------------------------------C
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVA-----------------------------------------------D  183 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------------------------------------~  183 (326)
                      =.    .++..++..+.++|++.|++|.-...                                               .
T Consensus        76 Mv----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM~V~P  151 (230)
T d1rpxa_          76 MI----VEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNP  151 (230)
T ss_dssp             ES----SSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCT
T ss_pred             ee----cchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEEEecC
Confidence            42    24566777788888888888843110                                               0


Q ss_pred             CCCC----cCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          184 RPRD----PAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       184 ~~~~----~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++.|    +.-++-++++++.     .++.|..-|||+ .+.+..+. ..|||.+++|++++.++.
T Consensus       152 Gf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn-~~~i~~l~-~~Gad~~V~GS~if~~~d  215 (230)
T d1rpxa_         152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVI-EAGANALVAGSAVFGAPD  215 (230)
T ss_dssp             TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHH-HHTCCEEEESHHHHTSSC
T ss_pred             CcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcC-HHHHHHHH-HcCCCEEEEChHHHCCCC
Confidence            1111    2224445544332     478888999997 45777788 699999999999776654

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=96.83  E-value=0.02  Score=50.04  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=74.0

Q ss_pred             ccCChHHHHHHHHHHhhcccCcEEEEecC-C-C-C----h------HHHHHHHHHHHHcCCcEEEEeecccCCCCCCc--
Q 020428          124 LLSKPELIHDILTMLKRNLDVPVTCKIRL-L-K-S----S------QDTVELARRIEKTGVSALAVHGRKVADRPRDP--  188 (326)
Q Consensus       124 l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g-~-~----~------~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~--  188 (326)
                      +..|-+..+++++..... +++|-.-+.. + . +    .      .++.+..+.+++.|+|.+.+.-.+.-+.|.+.  
T Consensus       108 ~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~  186 (305)
T d1rvga_         108 FETNVRETRRVVEAAHAV-GVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGR  186 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSS
T ss_pred             HHHHHHHHHHHHHHhchh-ceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCc
Confidence            334555666666666543 6666665543 1 1 0    0      13455555567899999998666666656432  


Q ss_pred             --CCHHHHHHHHHhcCCcEEEeCCC----------------------CCHHHHHHHHHhcCCcEEEeccch
Q 020428          189 --AKWGEIADIVAALSIPVIANGDV----------------------FEYDDFQRIKTAAGASSVMAARGA  235 (326)
Q Consensus       189 --~~~~~i~~i~~~~~iPVi~nGgI----------------------~s~~d~~~~l~~~Gad~VmiGr~~  235 (326)
                        .+++.+++|.+.+++|+..-||=                      .+.+++.+++ ..|+.-|=+++.+
T Consensus       187 ~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai-~~GV~KiNi~T~l  256 (305)
T d1rvga_         187 PFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAI-SLGIAKINTDTDL  256 (305)
T ss_dssp             CCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHH-HTTEEEEEECHHH
T ss_pred             ccchHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHH-HcCeEEEEeChHH
Confidence              68999999999999999988853                      2367788888 5788777777753

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=96.79  E-value=0.0023  Score=53.72  Aligned_cols=100  Identities=12%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             HHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC--CCCcCCHHHHHHH----HHh-cCCc
Q 020428          132 HDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR--PRDPAKWGEIADI----VAA-LSIP  204 (326)
Q Consensus       132 ~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i----~~~-~~iP  204 (326)
                      .+.+....+. ++.+.+.+.   +    ...++.+.+.+.+.|.+-+.-.-+.  ...+.+.+.+.++    ++. -++|
T Consensus       106 ~~~i~~~~~~-gl~~i~cv~---~----~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~  177 (224)
T d1hg3a_         106 EAAIRRAEEV-GLMTMVCSN---N----PAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVK  177 (224)
T ss_dssp             HHHHHHHHHH-TCEEEEEES---S----HHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSE
T ss_pred             hHHHHHHHHc-CCceeechh---h----HHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccc
Confidence            3444444433 555555442   1    2345667778888877654422221  1123334434333    222 2799


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |++.|||.+.+++..++ ..|+|||.||+|.+.-+.
T Consensus       178 vlygGsV~~~n~~~~~~-~~g~dGvLVGsAsl~a~d  212 (224)
T d1hg3a_         178 VLCGAGISTGEDVKKAI-ELGTVGVLLASGVTKAKD  212 (224)
T ss_dssp             EEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTCSS
T ss_pred             eEEeCCcCCHHHHHHHH-hCCCCEEEEcceeecCcC
Confidence            99999999999999999 689999999999887544

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=96.72  E-value=0.0046  Score=52.03  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchh
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGAL  236 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l  236 (326)
                      .....+..-.-.+.....+.+ +..     ..+.+.+..+++.. ++||+..+||.|++++.++.  .+||||++|+++.
T Consensus       142 ~~~~~a~~~~~~~~~~~~~~~-tg~-----~~~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~--~~ADgVVVGSAiv  213 (229)
T d1viza_         142 DIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA--EHADVIVVGNAVY  213 (229)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH--TTCSEEEECTHHH
T ss_pred             HHHHHHhhccceeEEEEEEec-cCc-----cccchhHHHHHhhccCcceEEEcccCCHHHHHHHH--cCCCEEEECHHHH
Confidence            344444444555554444332 221     12356667776654 59999999999999999877  4899999999987


Q ss_pred             cCc
Q 020428          237 WNA  239 (326)
Q Consensus       237 ~~P  239 (326)
                      .++
T Consensus       214 ~~i  216 (229)
T d1viza_         214 EDF  216 (229)
T ss_dssp             HCH
T ss_pred             hhH
Confidence            644

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.02  Score=49.37  Aligned_cols=128  Identities=15%  Similarity=0.157  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+-++.+.+ |+++|=++.          ..|-...-..+.-.++++.+.+..  .+||.+-+. ..+..++++
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gi~v~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~st~~ai~   87 (295)
T d1o5ka_          19 LDLESYERLVRYQLENGVNALIVLG----------TTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKTLK   87 (295)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECe----------eccchhhCCHHHHHHHhhhhccccccCCceEeecc-cccHHHHHH
Confidence            367788888887655 999988753          233333333444466777766655  578888664 256789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE-e-----CCCCCHHHHHHHHHhc
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA-N-----GDVFEYDDFQRIKTAA  224 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~d~~~~l~~~  224 (326)
                      +++.+++.|+|++.+..-.-. ..+...-++++++|.+++++||+. |     |--.+++.+.++.+..
T Consensus        88 ~a~~A~~~Gad~v~v~pP~y~-~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~  155 (295)
T d1o5ka_          88 LVKQAEKLGANGVLVVTPYYN-KPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADL  155 (295)
T ss_dssp             HHHHHHHHTCSEEEEECCCSS-CCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCEEEEeCCCCC-CCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhhc
Confidence            999999999999999764211 111112245667888888999863 3     6677899988887543

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.67  E-value=0.0037  Score=52.39  Aligned_cols=143  Identities=16%  Similarity=0.261  Sum_probs=87.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccC--CCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMG--CPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~g--cP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      ++..+|...|...+.+..+.+.+ ++|.  +|+-=|  +|.-     .+|      +    +.++.+++.++.|+.+-+=
T Consensus         3 kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~-----t~~------~----~~i~~i~~~~~~~~dvHLM   67 (220)
T d1h1ya_           3 KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL-----TIG------A----PVIQSLRKHTKAYLDCHLM   67 (220)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-----CBC------H----HHHHHHHTTCCSEEEEEEE
T ss_pred             EEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCcccccc-----ccC------c----hhhhhhhhhcchhhhhHHH
Confidence            57788888888888888887765 7874  566444  3432     121      2    4466667766777666443


Q ss_pred             CCCChHHHHHHHHHHHHcCCcEEEEeec---------------------------cc----------------------C
Q 020428          152 LLKSSQDTVELARRIEKTGVSALAVHGR---------------------------KV----------------------A  182 (326)
Q Consensus       152 ~g~~~~~~~e~a~~l~~~G~d~i~vh~r---------------------------~~----------------------~  182 (326)
                      .-    ++.++...+.++|++.|++|.-                           |.                      .
T Consensus        68 v~----~p~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~  143 (220)
T d1h1ya_          68 VT----NPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVE  143 (220)
T ss_dssp             SS----CGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSC
T ss_pred             hc----chhhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecC
Confidence            21    1123344444455555555422                           11                      0


Q ss_pred             CCCCC----cCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          183 DRPRD----PAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       183 ~~~~~----~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      .++.|    +..++-++++++. .+++|.+-|||+. +.+..+. ..|||.+++|++++.++.
T Consensus       144 PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~-~~i~~l~-~aGad~~V~GS~if~~~d  204 (220)
T d1h1ya_         144 PGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAA-SAGANCIVAGSSIFGAAE  204 (220)
T ss_dssp             TTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHH-HHTCCEEEESHHHHTSSC
T ss_pred             CCCcccccchhhhHHHHHHHhcCCCceEEEEecCCH-HHHHHHH-HCCCCEEEECHHHHCCCC
Confidence            11112    2236667777664 4689999999974 5777777 699999999999776554

>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.63  E-value=0.034  Score=47.32  Aligned_cols=157  Identities=16%  Similarity=0.210  Sum_probs=92.8

Q ss_pred             cCCCCHHHHHHHHHcCCCeEEeCceecccccccccccccccCcccccccCCcceee--e-cc-cCCCCcEEEEE-CC---
Q 020428           13 VRVGTLPFRLLAAQYGADITYGEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVF--R-TC-HQERNHVVFQM-GT---   84 (326)
Q Consensus        13 ~g~t~~~fr~~~~~~G~~l~~te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~p~~vQl-~g---   84 (326)
                      ...-|++|..++.+.|+|++..+-....-+ .      .+..+....   .+.++.  + .. .....-+++-+ |+   
T Consensus        22 lTaYD~~~A~~~~~agiDiiLVGDSlgmv~-~------G~~~T~~Vt---~d~m~~H~~aV~rga~~~~iv~DmPf~s~~   91 (262)
T d1oy0a_          22 LTAYDYSTARIFDEAGIPVLLVGDSAANVV-Y------GYDTTVPIS---IDELIPLVRGVVRGAPHALVVADLPFGSYE   91 (262)
T ss_dssp             EECCSHHHHHHHHTTTCCEEEECTTHHHHT-T------CCSSSSSCC---GGGTHHHHHHHHHHCTTSEEEEECCTTSST
T ss_pred             EeCCCHHHHHHHHHcCCCEEEEcCchhhhh-c------CCCCcceee---HHHHHHHHHHHHhccccceeEecchhhhcc
Confidence            344589999999999999887652111100 0      000010000   000000  0 00 11222355555 43   


Q ss_pred             CCHHHHHHHH-HHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC---------
Q 020428           85 SDAVRALTAA-KMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL---------  153 (326)
Q Consensus        85 ~~~~~~~~aa-~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g---------  153 (326)
                      .++++..+.| +.+.+ |++.|-+..| +                  ...++++++.+. ++||.-=+.+-         
T Consensus        92 ~s~~~a~~nA~r~~~~~ga~avkleg~-~------------------~~~~~I~~L~~~-gIPV~gHiGLtPQ~~~~~Gg  151 (262)
T d1oy0a_          92 AGPTAALAAATRFLKDGGAHAVKLEGG-E------------------RVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGG  151 (262)
T ss_dssp             TCHHHHHHHHHHHHHTTCCSEEEEEBS-G------------------GGHHHHHHHHHH-TCCEEEEEECCC--------
T ss_pred             cchHHHHHHHHHHHhccccceeeechh-h------------------hhHHHHHHHHhc-CCceEEeeeecceeeeecCc
Confidence            3466665554 55655 8999988643 1                  224567777665 88887766541         


Q ss_pred             -----CC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC
Q 020428          154 -----KS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG  209 (326)
Q Consensus       154 -----~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG  209 (326)
                           .+  ....++-++.++++|+..|.+-.-          ..++.++|.+.++||+|+-|
T Consensus       152 ~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE~V----------p~~la~~It~~~~IPtIGIG  204 (262)
T d1oy0a_         152 FRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV----------PAELATQITGKLTIPTVGIG  204 (262)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHCSSCEEEES
T ss_pred             cceeccchhhhHhHHHHHHHHhCCcEEEecccc----------cHhHHHHHHhhCCceEEEec
Confidence                 12  134556689999999999998654          35778899999999999877

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0059  Score=50.76  Aligned_cols=150  Identities=11%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c----cccccccccCChHHHHHHHHH--------
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V----SGGMGAALLSKPELIHDILTM--------  137 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~----~~~~G~~l~~~p~~~~~iv~~--------  137 (326)
                      .|++.=|.+.++++....++.+.+ |+..|||.+-.|....     +    .--.|+.-..+++.+.+.+++        
T Consensus        15 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP   94 (213)
T d1wbha1          15 GPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP   94 (213)
T ss_dssp             CSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECC
Confidence            378877889999999999998887 8999999987775210     0    112333334455554443222        


Q ss_pred             ---------HhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEE
Q 020428          138 ---------LKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIA  207 (326)
Q Consensus       138 ---------v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~  207 (326)
                               .++. ++|+.=-+       .+...+..+.++|++.+-+..-..-    |+  ..+++.++.-. +++++.
T Consensus        95 ~~~~~v~~~a~~~-~i~~iPGv-------~TpsEi~~A~~~G~~~vKlFPA~~~----Gg--~~~lkal~~p~p~~~~~p  160 (213)
T d1wbha1          95 GLTEPLLKAATEG-TIPLIPGI-------STVSELMLGMDYGLKEFKFFPAEAN----GG--VKALQAIAGPFSQVRFCP  160 (213)
T ss_dssp             SCCHHHHHHHHHS-SSCEEEEE-------SSHHHHHHHHHTTCCEEEETTTTTT----TH--HHHHHHHHTTCTTCEEEE
T ss_pred             CCCHHHHHHHHhc-CCCccCCc-------CCHHHHHHHHHCCCCEEEeccchhc----Ch--HHHHHHhcCcccCCceee
Confidence                     1111 22222111       1223344566788888877644211    11  35667766543 789999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                      .|||. .+++.+.+ ..|+.++.+|+.+..+.++
T Consensus       161 tGGV~-~~n~~~yl-~~g~v~~~~Gs~l~~~~~i  192 (213)
T d1wbha1         161 TGGIS-PANYRDYL-ALKSVLCIGGSWLVPADAL  192 (213)
T ss_dssp             BSSCC-TTTHHHHH-TSTTBSCEEEGGGSCHHHH
T ss_pred             eCCCC-HHHHHHHH-hCCCEEEEEChhhCChhhh
Confidence            99997 67899999 6899999999876544444

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.0058  Score=50.79  Aligned_cols=148  Identities=11%  Similarity=0.085  Sum_probs=89.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c----cccccccccCChHHHHHHHHH---------
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V----SGGMGAALLSKPELIHDILTM---------  137 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~----~~~~G~~l~~~p~~~~~iv~~---------  137 (326)
                      +++.=|.+.++++....++.+.+ |+..|||.+-.|....     +    .--.|+.-..+++.+.+.+++         
T Consensus        15 ~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~   94 (212)
T d1vhca_          15 KIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG   94 (212)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECCC
Confidence            57777788999999999998877 8999999887665211     0    011222223344443333221         


Q ss_pred             --------HhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEe
Q 020428          138 --------LKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIAN  208 (326)
Q Consensus       138 --------v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~n  208 (326)
                              .++. ++|+.=-+       .+...+..+.++|++.+-+..-..-    +  -..+++.++.-. ++|++..
T Consensus        95 ~~~~v~~~a~~~-~i~~iPGv-------~TpsEi~~A~~~G~~~vK~FPA~~~----g--G~~~lkal~~p~p~~~~~pt  160 (212)
T d1vhca_          95 LNPKIVKLCQDL-NFPITPGV-------NNPMAIEIALEMGISAVKFFPAEAS----G--GVKMIKALLGPYAQLQIMPT  160 (212)
T ss_dssp             CCHHHHHHHHHT-TCCEECEE-------CSHHHHHHHHHTTCCEEEETTTTTT----T--HHHHHHHHHTTTTTCEEEEB
T ss_pred             CCHHHHHHHHhc-CCCccCCc-------CCHHHHHHHHHCCCCEEEEcccccc----c--hHHHHHHHhccccCCeEEec
Confidence                    1111 22221111       1233345556788888877653211    1  135677776544 7999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          209 GDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |||. .+++.+.+ ..|+.++.+|+.+..+-+
T Consensus       161 GGV~-~~N~~~yl-~~g~v~~~~Gs~l~~~~~  190 (212)
T d1vhca_         161 GGIG-LHNIRDYL-AIPNIVACGGSWFVEKKL  190 (212)
T ss_dssp             SSCC-TTTHHHHH-TSTTBCCEEECGGGCHHH
T ss_pred             CCCC-HHHHHHHH-hCCCEEEEEChhhCCHHH
Confidence            9996 68899999 689999999887654333

>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0034  Score=51.97  Aligned_cols=126  Identities=10%  Similarity=0.175  Sum_probs=87.7

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLK  154 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~  154 (326)
                      +..+.|.-.+|+++.+.|+.+.+ ||..+-|-.|-                  +.-.+.++++|+.+ ++.+.+-..-+|
T Consensus         7 ~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~------------------~~d~~~i~~ir~~~~d~~l~vDaN~~~   68 (208)
T d1jpdx1           7 ITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN------------------HLISERMVAIRTAVPDATLIVDANESW   68 (208)
T ss_dssp             EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS------------------SCHHHHHHHHHHHCTTSEEEEECTTCC
T ss_pred             eeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC------------------CcHHHHHHHHHHhccccEEEEeccccc
Confidence            34455666789998887777655 99999986541                  11244577777776 455555555579


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.++++++++.+++.+..+|-       + +..+.+++..++++  ..+||...-++.+.+++.++.  ..+|.+++-
T Consensus        69 s~~~A~~~~~~l~~~~l~~iE-------e-P~~~~d~~~~~~l~--~~~pi~~~E~~~~~~~~~~l~--~~~d~~~~d  134 (208)
T d1jpdx1          69 RAEGLAARCQLLADLGVAMLE-------Q-PLPAQDDAALENFI--HPLPICADESCHTRSNLKALK--GRYEMVNIK  134 (208)
T ss_dssp             CSTTHHHHHHHHHHTTCCEEE-------C-CSCTTSCGGGGSSC--CSSCEEESTTCSSGGGHHHHB--TTBSEEEEC
T ss_pred             chhHHHHHHHHHHhccccccC-------c-cCCccCHHHHHhhh--cccceecCCCcCCHHHHHHHh--hccCEEEeC
Confidence            999999999999999998863       1 11233444445554  368999999999999998764  347766654

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.53  E-value=0.0048  Score=51.92  Aligned_cols=46  Identities=9%  Similarity=0.073  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          190 KWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       190 ~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +.+.+..+++.+ ++||+..+||+|+++++++. + +||||+||+++..
T Consensus       174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~-~-~ADgvIVGSaive  220 (231)
T d2f6ua1         174 NPELVAEVKKVLDKARLFYGGGIDSREKAREML-R-YADTIIVGNVIYE  220 (231)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHH-H-HSSEEEECHHHHH
T ss_pred             hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHH-h-cCCEEEEChHHhc
Confidence            456666666665 69999999999999999987 4 6999999999764

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=96.52  E-value=0.043  Score=46.48  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=73.6

Q ss_pred             cCCCEE--EEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-C------CChHHHHHHHHHHHHc
Q 020428           99 KDVAAI--DINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-L------KSSQDTVELARRIEKT  169 (326)
Q Consensus        99 ~~~d~i--dlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g------~~~~~~~e~a~~l~~~  169 (326)
                      -|+|+|  -++.|+|...           +..+.+.+++++..+ .++|+.+=.-. +      .+++.....++.+.+.
T Consensus       102 lGadaV~~~v~~g~~~e~-----------~~l~~~~~v~~e~~~-~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~El  169 (251)
T d1ojxa_         102 LGASAVGYTIYPGSGFEW-----------KMFEELARIKRDAVK-FDLPLVVWSYPRGGKVVNETAPEIVAYAARIALEL  169 (251)
T ss_dssp             TTCSEEEEEECTTSTTHH-----------HHHHHHHHHHHHHHH-HTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHH
T ss_pred             chhceEEEEEeCCCCchH-----------HHHHHHHHHHHHHHH-cCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHh
Confidence            377765  5566655431           113344444444433 38998765432 1      2344556668888999


Q ss_pred             CCcEEEEeecccCCCCCCcCCHHHHHHHH-HhcCCcEEEeCCCC--CHHHHHHHHH---hcCCcEEEeccchhcC
Q 020428          170 GVSALAVHGRKVADRPRDPAKWGEIADIV-AALSIPVIANGDVF--EYDDFQRIKT---AAGASSVMAARGALWN  238 (326)
Q Consensus       170 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~-~~~~iPVi~nGgI~--s~~d~~~~l~---~~Gad~VmiGr~~l~~  238 (326)
                      |+|.+-+-         -|.+.+...++. ....+||+..||=.  +.+++.+..+   +.||.|+.+||.++..
T Consensus       170 GaDivK~~---------~p~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~  235 (251)
T d1ojxa_         170 GADAMKIK---------YTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR  235 (251)
T ss_dssp             TCSEEEEC---------CCSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred             CCCEEEec---------CCCcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCc
Confidence            99999762         233455566554 45678988777654  5666655532   4799999999998754

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.51  E-value=0.024  Score=48.95  Aligned_cols=141  Identities=9%  Similarity=0.077  Sum_probs=97.8

Q ss_pred             CCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEEEE--ccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428           75 RNHVVFQMG----TSDAVRALTAAKMVCK-DVAAIDI--NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT  147 (326)
Q Consensus        75 ~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~idl--N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~  147 (326)
                      +.|++.-+.    |-+|+++++.+..+.. |.|.|-=  |++.|.-        +-+.++-+.+.+.+++..+.++....
T Consensus        18 ~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~--------~p~~eRv~~~~~a~~~a~~~TG~~~l   89 (283)
T d1ykwa1          18 GRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTW--------SSIEERAAHLGKARRKAEAETGEPKI   89 (283)
T ss_dssp             SSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTT--------BCHHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCC--------ccHHHHHHHHHHHHHHHHHHhCCeeE
Confidence            458888874    7889999999988777 7898832  3332211        22333445555555555555654444


Q ss_pred             EEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC------------CCCCHH
Q 020428          148 CKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG------------DVFEYD  215 (326)
Q Consensus       148 vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG------------gI~s~~  215 (326)
                      .-..+..+.++..+-++.+.+.|++.+.|..-+.        -|..+..+++..++||.+-.            || |..
T Consensus        90 ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~a~~~l~~~~~lpi~~H~a~~g~~~r~~~~Gi-s~~  160 (283)
T d1ykwa1          90 YLANITDEVDSLMEKHDVAVRNGANALLINALPV--------GLSAVRMLSNYTQVPLIGHFPFIASFSRMEKYGI-HSK  160 (283)
T ss_dssp             EEEECCCCGGGHHHHHHHHHHHTCCEEEEEHHHH--------CHHHHHHHHHHCSSCEEEECTTTHHHHCSTTSEE-CHH
T ss_pred             EeeecCCCHHHHHHHHHHHHHhCCCEEEEecccc--------hHHHHHHHHhhcCCCeEeeeccceeeccCcCCCc-cHH
Confidence            4344445677888999999999999998875432        27888888888899998743            34 445


Q ss_pred             HHHHHHHhcCCcEEEec
Q 020428          216 DFQRIKTAAGASSVMAA  232 (326)
Q Consensus       216 d~~~~l~~~Gad~VmiG  232 (326)
                      -+.++.+..|+|.+.++
T Consensus       161 vl~KL~RLaGaD~ih~~  177 (283)
T d1ykwa1         161 VMTKLQRLAGLDAVIMP  177 (283)
T ss_dssp             HHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHcCCCceeec
Confidence            56777778999999988

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=96.44  E-value=0.12  Score=43.59  Aligned_cols=142  Identities=13%  Similarity=0.123  Sum_probs=95.1

Q ss_pred             CCCcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEec
Q 020428           74 ERNHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIR  151 (326)
Q Consensus        74 ~~~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r  151 (326)
                      ..+.+++-|.+.+.+++.+.++.+.. ++|.||+=+-+=..           ..+++.+.++++.+++.+ ++|+.+-+|
T Consensus        14 g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~-----------~~~~~~l~~~~~~lr~~~~~~PiI~T~R   82 (252)
T d1gqna_          14 GMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMD-----------IASTQSVLTAARVIRDAMPDIPLLFTFR   82 (252)
T ss_dssp             SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSC-----------TTCHHHHHHHHHHHHHHCTTSCEEEECC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccc-----------cCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            34568899999999999888877765 89999996532110           135778899999998877 699999888


Q ss_pred             C----C---CChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeC----CCCCHHHHHH
Q 020428          152 L----L---KSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANG----DVFEYDDFQR  219 (326)
Q Consensus       152 ~----g---~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nG----gI~s~~d~~~  219 (326)
                      .    |   .++++..++.+.+.+.| +|+|.|--....      .....+....+..++.||++=    +--+.+++..
T Consensus        83 ~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~------~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~  156 (252)
T d1gqna_          83 SAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGD------ADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVS  156 (252)
T ss_dssp             BGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCH------HHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHH
T ss_pred             chhhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccH------HHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHH
Confidence            7    2   24567888888888888 899998644211      011122222334577787653    2234456554


Q ss_pred             HHH---hcCCcEEEec
Q 020428          220 IKT---AAGASSVMAA  232 (326)
Q Consensus       220 ~l~---~~Gad~VmiG  232 (326)
                      +++   ..|||.|=++
T Consensus       157 ~~~~m~~~gaDivKia  172 (252)
T d1gqna_         157 RLRKMQALGADIPKIA  172 (252)
T ss_dssp             HHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHhCCCeEEEE
Confidence            442   5788876544

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.44  E-value=0.031  Score=48.30  Aligned_cols=126  Identities=13%  Similarity=0.165  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+-++.+.+ |+++|=++..          .|-...-..+.-.++++.+.+.+  .+|+.+-+. +.+.+++++
T Consensus        25 iD~~~l~~~i~~li~~Gv~Gi~v~G~----------tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~-~~s~~~~i~   93 (296)
T d1xxxa1          25 LDTATAARLANHLVDQGCDGLVVSGT----------TGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHSIR   93 (296)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESST----------TTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECee----------ccchhhCCHHHHHHHHHHHHHHhccccceEeccc-cchhHHHHH
Confidence            467788888887766 9999988632          33333334455566667666555  467776553 356789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE-----e-CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA-----N-GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~-----n-GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-.-.. .+...-.+++++|.+.+++||+.     . |-..+++.+.++.+
T Consensus        94 ~a~~a~~~Gad~v~i~~P~~~~-~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~  159 (296)
T d1xxxa1          94 LAKACAAEGAHGLLVVTPYYSK-PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS  159 (296)
T ss_dssp             HHHHHHHHTCSEEEEECCCSSC-CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred             HHHHHHHhcCCeEEEEeccCCC-CCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcC
Confidence            9999999999999887542211 11112255677888888999874     2 44467887777763

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=96.37  E-value=0.0051  Score=51.54  Aligned_cols=145  Identities=16%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCE--EEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAA--IDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~--idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .+..+|...|...+.+..+.+.+ |+|.  |||-=|--+++.   .+|      +    ++++.+++.++.|+.+=+=. 
T Consensus         4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~---t~~------~----~~~~~i~~~t~~~~dvHLMv-   69 (221)
T d1tqja_           4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI---TIG------P----LIVDAIRPLTKKTLDVHLMI-   69 (221)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB---CBC------H----HHHHHHGGGCCSEEEEEEES-
T ss_pred             EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc---ccC------c----HhHHhhhhccCcceeeeEEE-
Confidence            35677888888888888888765 7884  566545333321   222      2    45677777777777775532 


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccC-----------------------------------------------CCCC
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVA-----------------------------------------------DRPR  186 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~-----------------------------------------------~~~~  186 (326)
                         .++..+++.+.++|++.+++|--+..                                               .++.
T Consensus        70 ---~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~pG~~  146 (221)
T d1tqja_          70 ---VEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFG  146 (221)
T ss_dssp             ---SSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC---
T ss_pred             ---eCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEecCCCC
Confidence               12334556666677777776643110                                               0111


Q ss_pred             C----cCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          187 D----PAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       187 ~----~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      |    +.-++-++++++.     .+++|..-|||+. +.+..+. ..|||.+++|++++.++.
T Consensus       147 GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~-~~Gad~~V~GS~if~~~d  207 (221)
T d1tqja_         147 GQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVL-EAGANAIVAGSAVFNAPN  207 (221)
T ss_dssp             -CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHH-HHTCCEEEESHHHHTSSC
T ss_pred             CcccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHH-HcCCCEEEEChHHhCCCC
Confidence            1    2224555554442     4688999999973 5677777 699999999999776554

>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: beta-Methylaspartase
species: Citrobacter amalonaticus [TaxId: 35703]

Probab=96.33  E-value=0.017  Score=49.06  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=91.2

Q ss_pred             CCCcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCcccccc-ccccccccCChHHHHHHHHHHhhcccCcEEEEecC
Q 020428           74 ERNHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVS-GGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL  152 (326)
Q Consensus        74 ~~~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~-~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~  152 (326)
                      ...|+.-|.+++..+......   .++++.+- +.+=..-+ .+ +..|..+...++.+.+.+++++...+.-+.+.+-.
T Consensus         5 ~~VP~~g~~g~~~~~~~e~mI---~~~a~~~~-~~~~~~lk-~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~   79 (251)
T d1kkoa1           5 EAIPLFGQSGDDRYIAVDKMI---LKGVDVLP-HALINNVE-EKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDV   79 (251)
T ss_dssp             CCCCEECCCTTCTTHHHHHHH---HTTCSEEE-ETTCCCCC-CCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEEC
T ss_pred             CCcccccccCCCcccchHHHH---HhhhHHHH-HHHHHHHH-HHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeecc
Confidence            345788788887765433322   23444331 11111111 11 12233444445666667777777765444433332


Q ss_pred             --------CCChHHHHHHHHHHHHcCCcE-EEEeecccCCCC---CCcCCHHHHHHHHHh-----cCCcEEEeCCCCCHH
Q 020428          153 --------LKSSQDTVELARRIEKTGVSA-LAVHGRKVADRP---RDPAKWGEIADIVAA-----LSIPVIANGDVFEYD  215 (326)
Q Consensus       153 --------g~~~~~~~e~a~~l~~~G~d~-i~vh~r~~~~~~---~~~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~  215 (326)
                              +|+.++++++++.|.+.+.++ +.+     ++..   ..+.||+..+++++.     .++||++.=.+.|.+
T Consensus        80 ~~~~~~~~~~~~~~ai~~l~~L~~~~~~~~l~I-----EqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~  154 (251)
T d1kkoa1          80 YGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQ  154 (251)
T ss_dssp             TTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHH
T ss_pred             ccccccccCCCHHHHHHHHHHHHHhcCCCceee-----cCCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHH
Confidence                    588889999999999887665 222     1211   123467778887765     469999999999999


Q ss_pred             HHHHHHHhcCCcEEEec
Q 020428          216 DFQRIKTAAGASSVMAA  232 (326)
Q Consensus       216 d~~~~l~~~Gad~VmiG  232 (326)
                      |+.++++...||.|++-
T Consensus       155 d~~~~i~~~a~d~v~iK  171 (251)
T d1kkoa1         155 DIVDFTDAGSCHMVQIK  171 (251)
T ss_dssp             HHHHHHHTTCCSEEEEC
T ss_pred             HHHHHHHhCCccceecc
Confidence            99999976668999886

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=96.20  E-value=0.023  Score=47.04  Aligned_cols=87  Identities=25%  Similarity=0.285  Sum_probs=68.3

Q ss_pred             HHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC
Q 020428          133 DILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF  212 (326)
Q Consensus       133 ~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~  212 (326)
                      ++++.+++.   ++..=+|. .+.++..++++.+.+.|+..|-|+-|+       +.-++.|++++++.+=-+++.|-|.
T Consensus         6 ~~~~~l~~~---~iipvlr~-~~~~~~~~~~~al~~~Gi~~iEitl~~-------~~a~~~I~~l~~~~p~~~vGaGTV~   74 (212)
T d1vhca_           6 QIIEKLREL---KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRS-------EAAADAIRLLRANRPDFLIAAGTVL   74 (212)
T ss_dssp             HHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEESCC
T ss_pred             HHHHHHHHC---CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHhcCCCceEeeeecc
Confidence            455566553   44444554 457789999999999999999999875       3347889999877644689999999


Q ss_pred             CHHHHHHHHHhcCCcEEEe
Q 020428          213 EYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~Vmi  231 (326)
                      |.++++++. ..||+.++-
T Consensus        75 ~~~~~~~a~-~aGa~FivS   92 (212)
T d1vhca_          75 TAEQVVLAK-SSGADFVVT   92 (212)
T ss_dssp             SHHHHHHHH-HHTCSEEEC
T ss_pred             cHHHHHHHH-hhCCcEEEC
Confidence            999999999 689998763

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=96.14  E-value=0.02  Score=47.49  Aligned_cols=78  Identities=22%  Similarity=0.282  Sum_probs=63.3

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhc
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAA  224 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~  224 (326)
                      ||..=+|. .+.++..++++.+.+.|+..|-|+-|+       |..++.|+.+++..+=-+++.|.|.|.++++++. ..
T Consensus        18 ~iipvl~~-~~~~~a~~~~~al~~~Gi~~iEitl~~-------p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~-~a   88 (216)
T d1mxsa_          18 RILPVITI-AREEDILPLADALAAGGIRTLEVTLRS-------QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVE-AA   88 (216)
T ss_dssp             SEEEEECC-SCGGGHHHHHHHHHHTTCCEEEEESSS-------THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHH-HH
T ss_pred             CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHH-hC
Confidence            34444554 467899999999999999999998874       3357889999887644689999999999999999 68


Q ss_pred             CCcEEEe
Q 020428          225 GASSVMA  231 (326)
Q Consensus       225 Gad~Vmi  231 (326)
                      ||+.++-
T Consensus        89 Ga~Fivs   95 (216)
T d1mxsa_          89 GAQFVVT   95 (216)
T ss_dssp             TCSSEEC
T ss_pred             CCCEEEC
Confidence            9987753

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.13  E-value=0.047  Score=47.49  Aligned_cols=107  Identities=21%  Similarity=0.172  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC------CCCcCCHH----HHHH
Q 020428          128 PELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR------PRDPAKWG----EIAD  196 (326)
Q Consensus       128 p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~------~~~~~~~~----~i~~  196 (326)
                      ++...+-+..+++.+ ..++.+....+.+.++..+.++.+++.|+|+|.++--.....      +.-..+.+    .++.
T Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~  165 (312)
T d1gtea2          86 AAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRW  165 (312)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHH
T ss_pred             hhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHH
Confidence            455555566665554 556777777778888999999999999999999874322111      10112333    3456


Q ss_pred             HHHhcCCcEE--EeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          197 IVAALSIPVI--ANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       197 i~~~~~iPVi--~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      +++.+++||+  ...++.+..++.+.+++.|++++.+.-.
T Consensus       166 v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~  205 (312)
T d1gtea2         166 VRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNT  205 (312)
T ss_dssp             HHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCC
T ss_pred             HhhccCCceeecccccchhHHHHHHHHHHhcccceEEEee
Confidence            6677799988  4667888888888887899999987543

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.026  Score=48.66  Aligned_cols=126  Identities=14%  Similarity=0.165  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+-++.+.+ |++++=++..          .|-...-..+.-.++++.+.+.+  .+|+.+-+. ..+..++++
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gl~~~Gs----------tGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~-~~s~~~~i~   87 (292)
T d2a6na1          19 VCRASLKKLIDYHVASGTSAIVSVGT----------TGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEAIS   87 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECee----------ccchhhCCHHHHHHHhhhhhhhccccceeEeecc-cchHHHHHH
Confidence            477888888887766 9999888742          23333334444456666665555  578888654 356789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE-Ee-----CCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI-AN-----GDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+..-.- ...+...-+++++.+.+++++||+ +|     |--.+++.+.++.+
T Consensus        88 ~~~~a~~~Gad~~~~~pP~~-~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~  153 (292)
T d2a6na1          88 LTQRFNDSGIVGCLTVTPYY-NRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAK  153 (292)
T ss_dssp             HHHTTTTSSCCEEEEECCCS-SCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred             HhccHHhcCCcceeccCCCC-CCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhc
Confidence            99999999999998875211 111112225567788888899976 43     44567888877753

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.09  E-value=0.021  Score=49.54  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=63.8

Q ss_pred             HHHHHHHhhc---ccCcEEEEecC----C---CC-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHH---HHHHH
Q 020428          132 HDILTMLKRN---LDVPVTCKIRL----L---KS-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWG---EIADI  197 (326)
Q Consensus       132 ~~iv~~v~~~---~~~pv~vK~r~----g---~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~---~i~~i  197 (326)
                      .+.++.+.+.   .++|+.+=+=.    .   .+ ++.....++.+.+.|+|.+-+--=..    .....|+   .+.++
T Consensus       139 ~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~----~~~~~~~~~~~~~~~  214 (291)
T d1to3a_         139 LNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLY----GKGARSDLLTASQRL  214 (291)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGG----GCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCC----chhhhHHHHHHHHHH
Confidence            3444444433   38888775422    1   12 33467778888999999887632110    1112333   34566


Q ss_pred             HHhcCCc-EEEeCCCCCHHHHHHHHH---hcCCcEEEeccchhcCcc
Q 020428          198 VAALSIP-VIANGDVFEYDDFQRIKT---AAGASSVMAARGALWNAS  240 (326)
Q Consensus       198 ~~~~~iP-Vi~nGgI~s~~d~~~~l~---~~Gad~VmiGr~~l~~P~  240 (326)
                      .+...+| |+.+||. +.+++.+.++   ..||.|+.+||.+..+|-
T Consensus       215 ~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~  260 (291)
T d1to3a_         215 NGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSSVI  260 (291)
T ss_dssp             HHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGGGT
T ss_pred             hhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhCcc
Confidence            6677899 6677776 4455544432   479999999999998873

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.018  Score=47.69  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=65.4

Q ss_pred             CcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh
Q 020428          144 VPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       144 ~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      .||..=+|. .+.++..++++.+.+.|+..|-++-|+       |.-.+.|++++++.+=-+++.|-|.|.+++++++ +
T Consensus        15 ~~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitl~t-------p~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~-~   85 (213)
T d1wbha1          15 GPVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRT-------ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVT-E   85 (213)
T ss_dssp             CSEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCS-------TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHH-H
T ss_pred             CCEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCeeeccccccHHHHHHHH-H
Confidence            466655664 567889999999999999999999875       3347889999987644589999999999999999 6


Q ss_pred             cCCcEEEe
Q 020428          224 AGASSVMA  231 (326)
Q Consensus       224 ~Gad~Vmi  231 (326)
                      .||+.++-
T Consensus        86 aGa~FivS   93 (213)
T d1wbha1          86 AGAQFAIS   93 (213)
T ss_dssp             HTCSCEEE
T ss_pred             CCCcEEEC
Confidence            89998764

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.085  Score=42.83  Aligned_cols=134  Identities=10%  Similarity=0.076  Sum_probs=86.8

Q ss_pred             ECC-CCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHH
Q 020428           82 MGT-SDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        82 l~g-~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~  160 (326)
                      |+| .+++++..+++   .|+|.+-+++.-+++.          .-+++.+.++++.+.   ..+|.|=.  ..   +..
T Consensus         5 ICGIt~~~d~~~~~~---~gaD~iGfif~~~SpR----------~Vs~~~a~~i~~~~~---~~~V~Vfv--~~---~~~   63 (198)
T d1piia1           5 VCGLTRGQDAKAAYD---AGAIYGGLIFVATSPR----------CVNVEQAQEVMAAAP---LQYVGVFR--NH---DIA   63 (198)
T ss_dssp             ECCCCSHHHHHHHHH---HTCSEEEEECCTTCTT----------BCCHHHHHHHHHHCC---CEEEEEES--SC---CHH
T ss_pred             EcCCCcHHHHHHHHh---CCCCEEEEEccCCCCC----------CcCHHHHHHhhhhcc---cccceeee--cc---chh
Confidence            455 35565555444   2789999888322332          125778888876553   11222211  22   334


Q ss_pred             HHHHHHHHcCCcEEEEeecccC-------------------------------------------CCCCCcCCHHHHHHH
Q 020428          161 ELARRIEKTGVSALAVHGRKVA-------------------------------------------DRPRDPAKWGEIADI  197 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~-------------------------------------------~~~~~~~~~~~i~~i  197 (326)
                      ++.+.++..+.|.|.+||....                                           +......||+++.. 
T Consensus        64 ~i~~~~~~~~~d~iQlHG~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~~-  142 (198)
T d1piia1          64 DVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNG-  142 (198)
T ss_dssp             HHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGTT-
T ss_pred             hHHHhhhcccccceeecCCccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhhcc-
Confidence            5667788889999999976420                                           01112468887543 


Q ss_pred             HHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCccc
Q 020428          198 VAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASI  241 (326)
Q Consensus       198 ~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~l  241 (326)
                        ....|++..||| +++.+.+++ +++..||=+.+|.=.+|..
T Consensus       143 --~~~~~~~LAGGl-~~~Nv~~a~-~~~p~gvDvsSGvE~~pG~  182 (198)
T d1piia1         143 --QSLGNVLLAGGL-GADNCVEAA-QTGCAGLDFNSAVESQPGI  182 (198)
T ss_dssp             --SCCTTEEEESSC-CTTTHHHHH-TTCCSEEEECGGGEEETTE
T ss_pred             --cccceeEEecCC-CHHHHHHHH-hcCCCEEEeCCcccCCCCC
Confidence              345799999999 689999999 5899999999997777764

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.78  E-value=0.043  Score=48.49  Aligned_cols=119  Identities=16%  Similarity=0.208  Sum_probs=83.3

Q ss_pred             ccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHH
Q 020428          120 MGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIAD  196 (326)
Q Consensus       120 ~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~  196 (326)
                      -|+.++.+.+++.+    +. .++.||.+|-....+.++....++.+...|-.-|.+.-|...   .......|+..+..
T Consensus       183 I~A~~~~n~~LL~~----~g-~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~  257 (338)
T d1vr6a1         183 IGARNAQNFRLLSK----AG-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPI  257 (338)
T ss_dssp             ECGGGTTCHHHHHH----HH-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHH
T ss_pred             echhhccCHHHHHH----hh-ccCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccce
Confidence            45666666665443    32 358999999988888999999999999999998888766432   22223568888998


Q ss_pred             HHHhcCCcEEEe----CCCCCH--HHHHHHHHhcCCcEEEeccchhcCcccccccC
Q 020428          197 IVAALSIPVIAN----GDVFEY--DDFQRIKTAAGASSVMAARGALWNASIFSSQG  246 (326)
Q Consensus       197 i~~~~~iPVi~n----GgI~s~--~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~  246 (326)
                      +++....|||..    ||-+..  .-++..+ ..||||+|+=.  --||.-.-.++
T Consensus       258 ~k~~~~lPVi~DpsHs~G~r~~v~~larAAv-A~GadGl~iE~--Hp~P~~AlsDg  310 (338)
T d1vr6a1         258 IRKESHLPILVDPSHSGGRRDLVIPLSRAAI-AVGAHGIIVEV--HPEPEKALSDG  310 (338)
T ss_dssp             HHHHBSSCEEECHHHHHCSGGGHHHHHHHHH-HHTCSEEEEEB--CSCGGGCSSCG
T ss_pred             eeccccCceeeCCCCCCCchhHHHHHHHHHH-HhCCCEEEEEe--CCCcccCCCCc
Confidence            998889999863    554432  2344555 58999999975  34676554433

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=95.76  E-value=0.059  Score=43.84  Aligned_cols=139  Identities=16%  Similarity=0.102  Sum_probs=85.4

Q ss_pred             EEECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428           80 FQMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD  158 (326)
Q Consensus        80 vQl~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~  158 (326)
                      |-|+|- ++++...+++   .|+|.+-+++-.+++.          .-.++.+.++++.+...+ .+|.|=..     .+
T Consensus         3 iKICGit~~ed~~~~~~---~gad~iGfif~~~SpR----------~vs~~~a~~i~~~~~~~~-~~V~Vf~~-----~~   63 (200)
T d1v5xa_           3 VKICGITRLEDALLAEA---LGAFALGFVLAPGSRR----------RIAPEAARAIGEALGPFV-VRVGVFRD-----QP   63 (200)
T ss_dssp             EEECCCCCHHHHHHHHH---HTCSEEEEECCTTCTT----------BCCHHHHHHHHHHSCSSS-EEEEEESS-----CC
T ss_pred             EEEcCCCcHHHHHHHHh---CCCCEEEEEcCCCCCC----------CcCHHHHHHHHHhhcCce-eeeeeeee-----ch
Confidence            456664 4555444333   2789998888433332          124777777777665432 22333221     13


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccC----------------------------------------CCCCCcCCHHHHHHHH
Q 020428          159 TVELARRIEKTGVSALAVHGRKVA----------------------------------------DRPRDPAKWGEIADIV  198 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~----------------------------------------~~~~~~~~~~~i~~i~  198 (326)
                      ..++.+.+++.+.|.+.+||....                                        ....+..+|++...+.
T Consensus        64 ~~~i~~~~~~~~~d~vQlHg~e~~~~~~~l~~~~~iik~~~~~~~~~~~~~~~~~~~~L~D~~~~g~g~~~~~~~~~~~~  143 (200)
T d1v5xa_          64 PEEVLRLMEEARLQVAQLHGEEPPEWAEAVGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLL  143 (200)
T ss_dssp             HHHHHHHHHHTTCSEEEECSCCCHHHHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGGGHHHH
T ss_pred             hhhhhhhhcccccccccccccCCHHHHHHHhhccccceeeccCchhhHHHhhcchhheeecccccCcccccchHHHhhhh
Confidence            345667788888999998876431                                        0111234565544433


Q ss_pred             HhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          199 AALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       199 ~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      . ...|++..|||. ++.+.++++ .+..||=+.+|+=..|.
T Consensus       144 ~-~~~~~~LAGGl~-~~Nv~~~~~-~~p~gvDvsSGvE~~~G  182 (200)
T d1v5xa_         144 A-TGRRVILAGGIA-PENLEEVLA-LRPYALDLASGVEEAPG  182 (200)
T ss_dssp             H-TTSCEEECSSCC-STTHHHHHH-HCCSEEEESGGGEEETT
T ss_pred             h-ccCceEecCCCC-HHHHHHHHh-cCCCEEEEcCceECCCC
Confidence            3 467999999997 666888884 78999999999754554

>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]

Probab=95.72  E-value=0.1  Score=45.39  Aligned_cols=143  Identities=9%  Similarity=0.085  Sum_probs=95.9

Q ss_pred             CCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEEE--EccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428           75 RNHVVFQMG----TSDAVRALTAAKMVCK-DVAAID--INMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT  147 (326)
Q Consensus        75 ~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~id--lN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~  147 (326)
                      +.|++..+.    |-+|+++++.+..+.. |+|.|-  =++.-|.-        +-+.++-+.+.+.+++..+.++....
T Consensus        18 ~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~~--------~p~~eRv~~~~~a~~~a~~~TG~~~l   89 (307)
T d1geha1          18 DRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWY--------NRFEERAEIMAKIIDKVENETGEKKT   89 (307)
T ss_dssp             SSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCTT--------SCHHHHHHHHHHHHHHHHHHTCSCCE
T ss_pred             CCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCC--------CcHHHHHHHHHHHHHHHHHHhCCeeE
Confidence            358888874    7889999999988877 788873  23332211        22334445555666666666766655


Q ss_pred             EEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHH---HhcCCcEEEe----C--------CCC
Q 020428          148 CKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIV---AALSIPVIAN----G--------DVF  212 (326)
Q Consensus       148 vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~---~~~~iPVi~n----G--------gI~  212 (326)
                      .=..+..+..+..+-++.+.++|+..+.|..-+.        -|..+..++   +..++||.+-    |        || 
T Consensus        90 Ya~NiT~~~~em~~ra~~a~~~G~~~vmi~~~~~--------G~~al~~lr~~~~~~~lpIh~H~A~~ga~~~~~~~Gi-  160 (307)
T d1geha1          90 WFANITADLLEMEQRLEVLADLGLKHAMVDVVIT--------GWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGI-  160 (307)
T ss_dssp             EECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHHH--------CHHHHHHHHHHHHHTTCEEEEECTTGGGTSSCTTSEE-
T ss_pred             EEEEccCChHHHHHHHHHHHHcCCCEEEEecccc--------chHHHHHHHHhhccCCeEEEeccccceeeecCccCCc-
Confidence            5566655677889999999999999998875432        245554444   4677898742    2        33 


Q ss_pred             CHHHHHHHHHhcCCcEEEeccc
Q 020428          213 EYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      |..-..+++...|+|.+.++.-
T Consensus       161 s~~vl~kl~Rl~GaD~ih~~~~  182 (307)
T d1geha1         161 SMFVLAKLYRLIGIDQLHVGTA  182 (307)
T ss_dssp             CHHHHHHHHHHHTCSEEECCCC
T ss_pred             cHHHHHHHHHHhCcCceecccc
Confidence            3445677777889999998753

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.70  E-value=0.027  Score=50.50  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcE
Q 020428          128 PELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPV  205 (326)
Q Consensus       128 p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPV  205 (326)
                      ++...+.+....+.. ...+.+-+....   +..+.++.+.++|+|.|+|+--  . .++ ..-.+.++++++.. ++||
T Consensus        79 ~~e~~~~~~~~~~~~~~~~v~aavGv~~---~~~er~~~l~~agvd~ivID~A--~-G~s-~~~~~~i~~ik~~~~~~~i  151 (365)
T d1zfja1          79 ITEQAEEVRKVKRSEGRLLVAAAVGVTS---DTFERAEALFEAGADAIVIDTA--H-GHS-AGVLRKIAEIRAHFPNRTL  151 (365)
T ss_dssp             HHHHHHHHHHHHHHTSCBCCEEEECSST---THHHHHHHHHHHTCSEEEECCS--C-TTC-HHHHHHHHHHHHHCSSSCE
T ss_pred             HHHHHHHhhhhhhccCceEEEEEeccCc---hHHHHHHHHHHcCCCEEEEECC--c-ccc-cchhHHHHHHHhhCCCcce
Confidence            344444455554433 233444443322   3457788888999999988522  1 111 11245677777765 6777


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      | .|+|.|++.++.++ +.|||+|-||-|
T Consensus       152 I-aGNV~T~e~a~~L~-~aGaD~VkVGiG  178 (365)
T d1zfja1         152 I-AGNIATAEGARALY-DAGVDVVKVGIG  178 (365)
T ss_dssp             E-EEEECSHHHHHHHH-HTTCSEEEECSS
T ss_pred             e-ecccccHHHHHHHH-hcCCceEEeeec
Confidence            6 69999999999999 699999999854

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=95.59  E-value=0.0087  Score=54.30  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      .+..+.++.|.++|+|.|+|..-.   .++ ..-.+.++++++.. ++||| .|+|.|++.++.++ +.|||+|-||-|
T Consensus       150 ~~~~~ra~~L~~aG~D~ivID~Ah---G~s-~~~~~~i~~ik~~~~~v~vI-aGNV~T~e~a~~L~-~~GaD~VkVGiG  222 (388)
T d1eepa_         150 IDTIERVEELVKAHVDILVIDSAH---GHS-TRIIELIKKIKTKYPNLDLI-AGNIVTKEAALDLI-SVGADCLKVGIG  222 (388)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSC---CSS-HHHHHHHHHHHHHCTTCEEE-EEEECSHHHHHHHH-TTTCSEEEECSS
T ss_pred             HHHHHHHHHHHhhccceeeeeccc---cch-HHHHHHHHHHHHHCCCCcee-eccccCHHHHHHHH-hcCCCeeeeccc
Confidence            356788899999999999996321   111 11256778887765 67765 58999999999999 699999999865

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.089  Score=45.17  Aligned_cols=126  Identities=11%  Similarity=0.180  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e  161 (326)
                      -|.+.+.+-++.+.+ |+++|=++.          ..|-...-..+.-.++++.+.+.+  .+|+.+-+. +.+..++++
T Consensus        20 iD~~~l~~~i~~l~~~Gv~gi~~~G----------~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~~s~~~~i~   88 (295)
T d1hl2a_          20 LDKASLRRLVQFNIQQGIDGLYVGG----------STGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAESQQ   88 (295)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECe----------EccchhhCCHHHHHHHHhhhHHhhccccceeeccc-cchhhHHHH
Confidence            467788888887766 999998874          344455455666677777776665  578877553 356789999


Q ss_pred             HHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEE------eCCCCCHHHHHHHHH
Q 020428          162 LARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIA------NGDVFEYDDFQRIKT  222 (326)
Q Consensus       162 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~------nGgI~s~~d~~~~l~  222 (326)
                      +++.+++.|+|++.+....... .+...-.+.+.++.+.. ++|++.      .|--.+++.+.++.+
T Consensus        89 ~a~~a~~~Gad~~~v~~p~~~~-~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~  155 (295)
T d1hl2a_          89 LAASAKRYGFDAVSAVTPFYYP-FSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT  155 (295)
T ss_dssp             HHHHHHHHTCSEEEEECCCSSC-CCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred             HHHHHHhcCCceeeeeeccccC-CChHHHHHHHHHHhcccCcCccccccccccccccccccccccccc
Confidence            9999999999999987653221 11111233444555543 667763      344457777777763

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.56  E-value=0.07  Score=45.84  Aligned_cols=110  Identities=13%  Similarity=0.066  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      -|.+.+.+-++.+.+ |+++|=++..          .|-...-.++.-.++++.+.+.. .++.+-+. +.+..++++++
T Consensus        17 iD~~~~~~~i~~l~~~Gv~gi~~~Gt----------tGE~~~Ls~~Er~~~~~~~~~~~-~~~i~gv~-~~st~~~i~~a   84 (293)
T d1w3ia_          17 IDKEKLKIHAENLIRKGIDKLFVNGT----------TGLGPSLSPEEKLENLKAVYDVT-NKIIFQVG-GLNLDDAIRLA   84 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHTTC-SCEEEECC-CSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECee----------chhhhhCCHHHHHHHHHHHHhhc-cccccccc-cchhhhhhhhh
Confidence            477888888887765 9999888642          33444445555677888777653 45554332 35678999999


Q ss_pred             HHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          164 RRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      +.+++.|+|++.+..-......+...-.+++++|.+.+++||+
T Consensus        85 ~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a~~~pi~  127 (293)
T d1w3ia_          85 KLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVY  127 (293)
T ss_dssp             HHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEE
T ss_pred             hhhhhhccccccccccchhccchHHHHHHHHHHHHHhhcccee
Confidence            9999999999987643211111111124566778888888875

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=95.50  E-value=0.03  Score=45.86  Aligned_cols=140  Identities=13%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             EEECCC-CHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHH
Q 020428           80 FQMGTS-DAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQD  158 (326)
Q Consensus        80 vQl~g~-~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~  158 (326)
                      +.|+|- ++++...+++   .|+|.+-+.+ .|.+.         -.=+++.+.++.+.+...+   ..|-.-...   +
T Consensus         4 IKICGit~~~da~~~~~---~gad~iGfI~-~~~Sp---------R~Vs~~~a~~i~~~~~~~~---~~V~V~v~~---~   64 (205)
T d1nsja_           4 VKICGITNLEDALFSVE---SGADAVGFVF-YPKSK---------RYISPEDARRISVELPPFV---FRVGVFVNE---E   64 (205)
T ss_dssp             EEECCCCSHHHHHHHHH---HTCSEEEEEC-CTTCT---------TBCCHHHHHHHHHHSCSSS---EEEEEESSC---C
T ss_pred             EEEcCCCcHHHHHHHHh---CCCCEEeEec-cCCCC---------CccCHHHHHHHHhhhcccc---eeecccccc---H
Confidence            466774 4555544333   3789888877 44321         0124677777776665331   222221122   2


Q ss_pred             HHHHHHHHHHcCCcEEEEeecccC--------------------------------------------CCCCCcCCHHHH
Q 020428          159 TVELARRIEKTGVSALAVHGRKVA--------------------------------------------DRPRDPAKWGEI  194 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~--------------------------------------------~~~~~~~~~~~i  194 (326)
                      ..++...+++.+.+.+.+||-...                                            ++.....||+.+
T Consensus        65 ~~~i~~~~~~~~~~~vQlhg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~  144 (205)
T d1nsja_          65 PEKILDVASYVQLNAVQLHGEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLI  144 (205)
T ss_dssp             HHHHHHHHHHHTCSEEEECSCCCHHHHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGT
T ss_pred             HHHHHhhhhhccccchhccchhhHHHHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCCcccchhhc
Confidence            334555666778888888865320                                            111235689988


Q ss_pred             HHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          195 ADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       195 ~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ..+... ..|++..|||. ++.+.++++..+..||=+.+|+=..|.
T Consensus       145 ~~~~~~-~~~~~LAGGl~-~~Nv~~ai~~~~p~gvDvsSgvE~~~G  188 (205)
T d1nsja_         145 LPYRDR-FRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVEAFPG  188 (205)
T ss_dssp             GGGGGG-SSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred             ccchhc-ccceeeecCCC-HHHHHHHHHHhCCCEEEEcCcccCCCC
Confidence            776553 45899999996 788888887789999999999755554

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.049  Score=48.04  Aligned_cols=98  Identities=19%  Similarity=0.308  Sum_probs=64.9

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPV  205 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPV  205 (326)
                      +|+...+.++.+++. ..++.+-+....   +..+.++.+.++|+|.++|+.-  .+ +. ..-.+.++.+++.. ++||
T Consensus        71 ~~e~~~~~i~~vk~~-~~~v~~~vgv~~---~~~e~~~~li~agvd~ivId~A--~G-~~-~~~~~~ik~ik~~~~~~~v  142 (330)
T d1vrda1          71 TPDEQARQVSIVKKT-RLLVGAAVGTSP---ETMERVEKLVKAGVDVIVIDTA--HG-HS-RRVIETLEMIKADYPDLPV  142 (330)
T ss_dssp             CHHHHHHHHHHHHTC-CBCCEEEECSST---THHHHHHHHHHTTCSEEEECCS--CC-SS-HHHHHHHHHHHHHCTTSCE
T ss_pred             chhhhHHHHHHHhhh-ccEEEEEEecCH---HHHHHHHHHHHCCCCEEEEecC--CC-Cc-hhHHHHHHHHHHhCCCCCE
Confidence            467777777777653 334444443322   3457788888999999998521  11 11 11245677777654 6776


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      | .|+|.|++.++.+. +.|||+|-+|-|
T Consensus       143 i-aGnV~t~~~a~~l~-~~GaD~v~VGig  169 (330)
T d1vrda1         143 V-AGNVATPEGTEALI-KAGADAVKVGVG  169 (330)
T ss_dssp             E-EEEECSHHHHHHHH-HTTCSEEEECSS
T ss_pred             E-eechhHHHHHHHHH-HcCCCEEeeccc
Confidence            5 48899999999998 699999988743

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.39  E-value=0.019  Score=51.71  Aligned_cols=101  Identities=16%  Similarity=0.211  Sum_probs=68.7

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEec---------CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHH
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIR---------LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADI  197 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r---------~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i  197 (326)
                      .|+...+-++.++.....|+..+..         .+. .++..+.+..+.++|++.++++.-...   . ..-.+.++.+
T Consensus        80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~-~~~~~~~~~~l~~agv~vi~id~a~g~---~-~~~~~~i~~i  154 (378)
T d1jr1a1          80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGT-HEDDKYRLDLLALAGVDVVVLDSSQGN---S-IFQINMIKYM  154 (378)
T ss_dssp             CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECS-STHHHHHHHHHHHHTCCEEEECCSSCC---S-HHHHHHHHHH
T ss_pred             CHHHHHHHHheehhhhhCcccccccccCEEEEEEecc-CHHHHHHHHHHHhhccceEeeeccCcc---c-hhhHHHHHHH
Confidence            5667777777777665555433221         122 235566788889999999998754221   1 1124566777


Q ss_pred             HHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          198 VAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       198 ~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      ++.. ++||| .|+|.|++.++.++ +.|||+|-+|-|
T Consensus       155 k~~~~~~~iI-aGnVaT~e~a~~L~-~aGAD~VkVGiG  190 (378)
T d1jr1a1         155 KEKYPNLQVI-GGNVVTAAQAKNLI-DAGVDALRVGMG  190 (378)
T ss_dssp             HHHSTTCEEE-EEEECSHHHHHHHH-HHTCSEEEECSS
T ss_pred             HHHCCCCcee-ecccccHHHHHHHH-HhCCCEEeeccc
Confidence            7665 56665 79999999999999 699999998855

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=95.31  E-value=0.049  Score=46.08  Aligned_cols=76  Identities=20%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++|+.+++.||++|.|..-   +.+- ..+++.+..+++.+++||.---=|.++.++.+.. ..|||+|.+--+++.
T Consensus        66 dp~~~A~~y~~~GA~aiSVLTe---~~~F-~Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~-~~GADaVLLIaall~  140 (254)
T d1vc4a_          66 DPVEAALAYARGGARAVSVLTE---PHRF-GGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEAR-AFGASAALLIVALLG  140 (254)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECC---CSSS-CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHH-HTTCSEEEEEHHHHG
T ss_pred             CHHHHHHHHHhcCCceEEEEcC---cccc-cccHHHHHHHHHHcCCCcccCCccccHHHHHHHH-hccchHHHHHHHHHH
Confidence            6788999999999999988642   2222 2358889999999999999999999999999999 699999998877654


Q ss_pred             C
Q 020428          238 N  238 (326)
Q Consensus       238 ~  238 (326)
                      +
T Consensus       141 ~  141 (254)
T d1vc4a_         141 E  141 (254)
T ss_dssp             G
T ss_pred             H
Confidence            3

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.30  E-value=0.046  Score=43.46  Aligned_cols=94  Identities=10%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             HHHHHHHHhhcc-cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHhc-CCcEEE
Q 020428          131 IHDILTMLKRNL-DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAAL-SIPVIA  207 (326)
Q Consensus       131 ~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~~-~iPVi~  207 (326)
                      +.+.++.+++.. ..++.|-.       +..+.++.+.++|+|.|.+...+.+       +. +.++.++..- .+.+-+
T Consensus        66 i~~~i~~~k~~~~~~~I~VEv-------~s~~q~~~a~~~~~diImLDN~sp~-------~~k~~v~~~~~~~~~i~lEa  131 (169)
T d1qpoa1          66 VVDALRAVRNAAPDLPCEVEV-------DSLEQLDAVLPEKPELILLDNFAVW-------QTQTAVQRRDSRAPTVMLES  131 (169)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEE-------SSHHHHHHHGGGCCSEEEEETCCHH-------HHHHHHHHHHHHCTTCEEEE
T ss_pred             hhhhhhhhhhhcCCCceEEEe-------ccHHHhhhhhhcCCcEEEecCcChH-------hHHHHHHHhhccCCeeEEEE
Confidence            345666665544 55677766       3466678888899999999865322       22 2333333332 467889


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +||| +.+.+.++. .+|+|.+.+|.-...-|+
T Consensus       132 SGgI-~~~ni~~ya-~~GvD~IS~galt~sa~~  162 (169)
T d1qpoa1         132 SGGL-SLQTAATYA-ETGVDYLAVGALTHSVRV  162 (169)
T ss_dssp             ESSC-CTTTHHHHH-HTTCSEEECGGGTSSBCC
T ss_pred             eCCC-CHHHHHHHH-HcCCCEEECCccccCCCc
Confidence            9999 588888888 699999999954443343

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.29  E-value=0.079  Score=41.89  Aligned_cols=89  Identities=11%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             HHHHHHhhc-ccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeC
Q 020428          133 DILTMLKRN-LDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANG  209 (326)
Q Consensus       133 ~iv~~v~~~-~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nG  209 (326)
                      +.++.++.. ...+|.|-.+       ..+-++.+.++|+|.|.+...+          .+.+++..+.+  ++.+-++|
T Consensus        68 ~~~~~~~~~~~~~~IeVEv~-------~~~~~~~a~~~g~diImLDN~~----------pe~~~~av~~i~~~~~lEaSG  130 (167)
T d1qapa1          68 QAVEKAFWLHPDVPVEVEVE-------NLDELDDALKAGADIIMLDNFN----------TDQMREAVKRVNGQARLEVSG  130 (167)
T ss_dssp             HHHHHHHHHSTTSCEEEEES-------SHHHHHHHHHTTCSEEEESSCC----------HHHHHHHHHTTCTTCCEEECC
T ss_pred             hhhHHHhhcCCCceEEEecC-------cHHHHHHHHhcCCcEEEecCCC----------HHHHHHHHHhcCCceEEEEeC
Confidence            444444433 2566666553       2344566667999999987653          34455544444  57888999


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          210 DVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       210 gI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus       131 gI~-~~ni~~ya-~~GVD~IS~galt~~a~~  159 (167)
T d1qapa1         131 NVT-AETLREFA-ETGVDFISVGALTKHVRA  159 (167)
T ss_dssp             CSC-HHHHHHHH-HTTCSEEECSHHHHEEEC
T ss_pred             CCC-HHHHHHHH-HcCCCEEECCcccCCCCc
Confidence            995 88898888 699999999965454443

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.17  E-value=0.14  Score=44.74  Aligned_cols=143  Identities=6%  Similarity=-0.045  Sum_probs=93.1

Q ss_pred             CCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEEEE--ccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428           75 RNHVVFQMG----TSDAVRALTAAKMVCK-DVAAIDI--NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT  147 (326)
Q Consensus        75 ~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~idl--N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~  147 (326)
                      +.|++.-+.    |-+|+++++.+..+.. |+|.|-=  ++..|.-        +-+.++-+.+.+.+....+.++....
T Consensus        16 ~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~--------~p~~eRv~~~~~av~~a~~eTG~~k~   87 (325)
T d1wdda1          16 GRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPF--------MRWRDRFVFCAEAIYKSQAETGEIKG   87 (325)
T ss_dssp             SSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTT--------BCHHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCC--------cchHHHHHHHHHHHHHHHHhhCCcee
Confidence            357777774    7889999999988776 7898832  3332211        12233444555555555555554433


Q ss_pred             EEecC-CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH---hcCCcEEE------------eCCC
Q 020428          148 CKIRL-LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA---ALSIPVIA------------NGDV  211 (326)
Q Consensus       148 vK~r~-g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~---~~~iPVi~------------nGgI  211 (326)
                      .=..+ +.+.++..+-++.+.++|++.+.+.--+.        -|..+..+++   ..++|+.+            +.||
T Consensus        88 y~~nit~~~~~em~~ra~~a~e~G~~~~mi~~~~~--------G~~a~~~l~~~~~~~~l~ih~Hra~~ga~tr~~~~Gi  159 (325)
T d1wdda1          88 HYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTG--------GFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGM  159 (325)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHHTCSEEEEEHHHH--------CHHHHHHHHHHHHHHTCEEEEECTTHHHHHSCSSSEE
T ss_pred             EEeccCCCCHHHHHHHHHHHHHcCCCEEEEecccc--------cHHHHHHHHHhhhhcCceeecccccccccccCCCCCc
Confidence            33333 34567788889999999999998753321        2455555544   45788886            5666


Q ss_pred             CCHHHHHHHHHhcCCcEEEeccc
Q 020428          212 FEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       212 ~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                       +..-..++.+..|+|.+.+|..
T Consensus       160 -s~~vl~kl~RLaGaD~ih~~~~  181 (325)
T d1wdda1         160 -HFRVLAKALRMSGGDHIHAGTV  181 (325)
T ss_dssp             -CHHHHHHHHHHHCCSEEECCCS
T ss_pred             -cHHHHHHHHHHcCCCccccCcc
Confidence             4566778888899999998864

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.11  E-value=0.056  Score=44.19  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=61.2

Q ss_pred             cEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHh
Q 020428          145 PVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPVIANGDVFEYDDFQRIKTA  223 (326)
Q Consensus       145 pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPVi~nGgI~s~~d~~~~l~~  223 (326)
                      |+..=+|. .+.++...+++.+.+.|+..+-++-|+       |.-++.++++++. ..--+++.|-|.|.+++++++ +
T Consensus        10 ~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitlr~-------p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~-~   80 (202)
T d1wa3a1          10 KIVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTV-------PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAV-E   80 (202)
T ss_dssp             CEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHH-H
T ss_pred             CEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEecCC-------ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHH-h
Confidence            44444553 567899999999999999999998774       3347888887753 244589999999999999999 6


Q ss_pred             cCCcEEE
Q 020428          224 AGASSVM  230 (326)
Q Consensus       224 ~Gad~Vm  230 (326)
                      .||+.++
T Consensus        81 aGa~fiv   87 (202)
T d1wa3a1          81 SGAEFIV   87 (202)
T ss_dssp             HTCSEEE
T ss_pred             hcccEEe
Confidence            9999886

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.00  E-value=0.11  Score=44.56  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHHHh-hc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc--cCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAKMV-CK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL--DVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~~~-~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~  160 (326)
                      -|.+.+.+-.+.+ .. |+++|=++.          ..|-...-..+.-.++++.+.+.+  .+||.+-+. +.+..+++
T Consensus        21 iD~~~l~~~i~~li~~~Gv~gi~v~G----------ttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~i   89 (293)
T d1f74a_          21 INEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAV   89 (293)
T ss_dssp             BCHHHHHHHHHHHHHTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCEEEECc----------cCcchhhCCHHHHhhhhheeeccccCccccccccc-cccHHHHH
Confidence            4678888888765 45 899988863          233444445566666777666555  577777553 36788999


Q ss_pred             HHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          161 ELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      ++++.+++.|+|++.+.....- ..+...-.+.+..+.+..++|++
T Consensus        90 ela~~a~~~Gad~i~~~pP~~~-~~s~~~~~~~~~~v~~~~~~pi~  134 (293)
T d1f74a_          90 ELGKYATELGYDCLSAVTPFYY-KFSFPEIKHYYDTIIAETGSNMI  134 (293)
T ss_dssp             HHHHHHHHHTCSEEECCCCCSS-CCCHHHHHHHHHHHHHHHCCCEE
T ss_pred             HHHHHHHHcCCCEeeccCcccc-ccchHHHHHHHhcccccCCceEE
Confidence            9999999999999977544221 11111113444556666677765

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.92  E-value=0.095  Score=42.54  Aligned_cols=120  Identities=11%  Similarity=0.055  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC-----CChHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL-----KSSQDT  159 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g-----~~~~~~  159 (326)
                      +++...+.|+.+.. |+.+|.++.                   +    +.+..+++..+.|+.......     ......
T Consensus        21 ~~~~~a~~A~aa~~~Ga~~i~~~~-------------------~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (222)
T d1y0ea_          21 SSFIMSKMALAAYEGGAVGIRANT-------------------K----EDILAIKETVDLPVIGIVKRDYDHSDVFITAT   77 (222)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEES-------------------H----HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCS
T ss_pred             CcHHHHHHHHHHHHCCCeEEecCC-------------------H----HHHHHHHHhcCCccceeeccCCcchHHhhccc
Confidence            56777777877766 888887752                   1    225566777777775443321     122345


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+..+.+.++|+|.+.+........  ....++.+..+++.... ++..+++.|.+++.+.. ..|+|++.++
T Consensus        78 ~~~~~~~~~agad~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~v~~~~~t~~~a~~~~-~~g~d~i~~~  146 (222)
T d1y0ea_          78 SKEVDELIESQCEVIALDATLQQRP--KETLDELVSYIRTHAPN-VEIMADIATVEEAKNAA-RLGFDYIGTT  146 (222)
T ss_dssp             HHHHHHHHHHTCSEEEEECSCSCCS--SSCHHHHHHHHHHHCTT-SEEEEECSSHHHHHHHH-HTTCSEEECT
T ss_pred             HHHHHhHHHcCCCEEEeeccccccc--cchHHHHHHHHHHhCCc-eEEeecCCCHHHHHHHH-HcCCCeEEEe
Confidence            5667778889999998876543321  12234556666665433 44567789999999888 6999998765

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=94.81  E-value=0.015  Score=48.22  Aligned_cols=147  Identities=10%  Similarity=0.086  Sum_probs=83.8

Q ss_pred             cEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCcccc-----c----cccccccccCChHHHHHHHHHHhhcc----
Q 020428           77 HVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFS-----V----SGGMGAALLSKPELIHDILTMLKRNL----  142 (326)
Q Consensus        77 p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~-----~----~~~~G~~l~~~p~~~~~iv~~v~~~~----  142 (326)
                      |++.=|.+.++++..+.++.+.+ |+..||+.+-.|....     +    .--.|+.-..+++.+.+.+++=.+-+    
T Consensus        18 ~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~   97 (216)
T d1mxsa_          18 RILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG   97 (216)
T ss_dssp             SEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC
Confidence            67777788999999999998887 8999999887664210     0    01122222334444333322111000    


Q ss_pred             ------------cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC
Q 020428          143 ------------DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG  209 (326)
Q Consensus       143 ------------~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG  209 (326)
                                  ++|+.=-+       -+...+..+.++|++.+-+..-...    +  -..+++.++.-. ++|++..|
T Consensus        98 ~~~~v~~~a~~~~i~~iPGv-------~TpsEi~~A~~~G~~~vKlFPA~~~----~--g~~~ikal~~p~p~~~fiptG  164 (216)
T d1mxsa_          98 ITEDILEAGVDSEIPLLPGI-------STPSEIMMGYALGYRRFKLFPAEIS----G--GVAAIKAFGGPFGDIRFCPTG  164 (216)
T ss_dssp             CCHHHHHHHHHCSSCEECEE-------CSHHHHHHHHTTTCCEEEETTHHHH----T--HHHHHHHHHTTTTTCEEEEBS
T ss_pred             CcHHHHHHHHhcCCCccCCc-------CCHHHHHHHHHCCCCEEEecccccc----c--cHHHHHHHhcccccCceeccC
Confidence                        11111111       1222344455677777766543211    0  135666666533 79999999


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEeccchhcC
Q 020428          210 DVFEYDDFQRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       210 gI~s~~d~~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      ||. .+++.+.+ ..|+-.+..|+.++.+
T Consensus       165 GV~-~~n~~~yl-~~~~v~avggs~l~~~  191 (216)
T d1mxsa_         165 GVN-PANVRNYM-ALPNVMCVGTTWMLDS  191 (216)
T ss_dssp             SCC-TTTHHHHH-HSTTBCCEEECTTSCH
T ss_pred             CCC-HHHHHHHH-hcCCeEEEEccccCCH
Confidence            997 57899999 4666666667654443

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.76  E-value=0.035  Score=44.18  Aligned_cols=93  Identities=10%  Similarity=0.106  Sum_probs=60.1

Q ss_pred             HHHHHHHhhcc--cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHh-cCCcEEE
Q 020428          132 HDILTMLKRNL--DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAA-LSIPVIA  207 (326)
Q Consensus       132 ~~iv~~v~~~~--~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~-~~iPVi~  207 (326)
                      .+.++.+++..  ..+|.|-.+       +.+.+..+.++|+|.|.+...+.+       +. +.+..++.. .++.+-+
T Consensus        65 ~~~~~~~~~~~~~~~~I~VEv~-------~~~e~~~a~~~g~d~i~LDn~~pe-------~~k~~~~~lk~~~~~i~lEa  130 (170)
T d1o4ua1          65 ERAVQEVRKIIPFTTKIEVEVE-------NLEDALRAVEAGADIVMLDNLSPE-------EVKDISRRIKDINPNVIVEV  130 (170)
T ss_dssp             HHHHHHHHTTSCTTSCEEEEES-------SHHHHHHHHHTTCSEEEEESCCHH-------HHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHhhCCCCceEEEEeC-------cHHHHHHHHhcCccEEEEcCcChh-------hHhHHHHHHHhhCCcEEEEE
Confidence            45666666554  356777663       345566677899999998865322       22 122333332 2577889


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      +|||. .+.+.++. .+|+|.+.+|.-...-|+
T Consensus       131 SGGI~-~~ni~~~a-~~GVD~Is~g~lt~~a~~  161 (170)
T d1o4ua1         131 SGGIT-EENVSLYD-FETVDVISSSRLTLQEVF  161 (170)
T ss_dssp             EECCC-TTTGGGGC-CTTCCEEEEGGGTSSCCC
T ss_pred             ECCCC-HHHHHHHH-HcCCCEEEcCccccCCCC
Confidence            99996 77787776 699999999965444343

>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: beta-Methylaspartase
species: Clostridium tetanomorphum [TaxId: 1553]

Probab=94.74  E-value=0.13  Score=43.52  Aligned_cols=145  Identities=11%  Similarity=0.039  Sum_probs=83.8

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHH---HHHhhcccCcEEEEec-
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDIL---TMLKRNLDVPVTCKIR-  151 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv---~~v~~~~~~pv~vK~r-  151 (326)
                      .|+-.|.++..+....+++   .+.++.. .+.|-..   .+...|.....+++.+..++   ++++...+.-+.+.+- 
T Consensus         7 VPiy~~~G~~~~~~~d~~i---~k~~~~~-~~~~~~~---vK~K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~   79 (253)
T d1kcza1           7 VPVFAQSGDDRYDNVDKMI---IKEADVL-PHALINN---VEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDV   79 (253)
T ss_dssp             CCEECCCTTCTTHHHHHHH---HTTCSEE-EECCCCC---CCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEEC
T ss_pred             CCeeeccCCcccccHHHHH---HHHhhhh-hhhhhhh---hchhcCCCccccHHHHHHHHHHHHHHhcccccCceeeehh
Confidence            4788888777655444332   2222221 1112111   12334444444455544444   4445454333333332 


Q ss_pred             -------CCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC----HHHHHHHHHh-----cCCcEEEeCCCCCHH
Q 020428          152 -------LLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK----WGEIADIVAA-----LSIPVIANGDVFEYD  215 (326)
Q Consensus       152 -------~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~----~~~i~~i~~~-----~~iPVi~nGgI~s~~  215 (326)
                             .+|+.+++++++..|++.+..+-..    -+|. -...|    ++.++++++.     .++||++.=.++|++
T Consensus        80 ~~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~----iEqP-~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~  154 (253)
T d1kcza1          80 YGTIGAAFDVDIKAMADYIQTLAEAAKPFHLR----IEGP-MDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVE  154 (253)
T ss_dssp             TTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEE----EECS-BCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHH
T ss_pred             hhccCccCCCCHHHHHHHHHHHHHhcCCCCce----EecC-CCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHH
Confidence                   2689999999999999887665210    1111 12224    4556677665     468999988899999


Q ss_pred             HHHHHHHhcCCcEEEec
Q 020428          216 DFQRIKTAAGASSVMAA  232 (326)
Q Consensus       216 d~~~~l~~~Gad~VmiG  232 (326)
                      |+.++++...+|.|.+=
T Consensus       155 d~~~~i~~~a~d~v~iK  171 (253)
T d1kcza1         155 DVKFFTDNKAGHMVQIK  171 (253)
T ss_dssp             HHHHHHHTTCSSEEEEC
T ss_pred             HHHHHHHhCCcCeeecc
Confidence            99999965568988875

>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.72  E-value=0.19  Score=43.30  Aligned_cols=142  Identities=6%  Similarity=0.033  Sum_probs=96.6

Q ss_pred             CCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEEE--EccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428           75 RNHVVFQMG----TSDAVRALTAAKMVCK-DVAAID--INMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT  147 (326)
Q Consensus        75 ~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~id--lN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~  147 (326)
                      +.|++.-+.    |-+|+++++.+..+.. |+|.|-  =++..|.        -+-+.++.+.+.+.++...+.++....
T Consensus        18 ~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~--------~~p~~eRv~~~~~a~~~a~~~tG~~~~   89 (291)
T d2d69a1          18 DRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFP--------FNRFEERVRKLYRVRDRVEAETGETKE   89 (291)
T ss_dssp             SSCEEEECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBT--------TBCHHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCceEEeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCC--------CCCHHHHHHHHHHHHHHHHHHhCCeeE
Confidence            458888774    7889999999988877 789883  2333211        122334555666666666666666665


Q ss_pred             EEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHH---HhcCCcEEEeC------------CCC
Q 020428          148 CKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIV---AALSIPVIANG------------DVF  212 (326)
Q Consensus       148 vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~---~~~~iPVi~nG------------gI~  212 (326)
                      .=..+..+.++..+-++.+.++|+..+.|..-+.        -|..+..++   +...+||.+--            || 
T Consensus        90 Ya~Nit~~~~~m~~ra~~~~~~G~~~vmi~~~~~--------G~~al~~l~~~~~~~~l~ih~Hra~~g~~~r~~~~Gi-  160 (291)
T d2d69a1          90 YLINITGPVNIMEKRAEMVANEGGQYVMIDIVVA--------GWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGI-  160 (291)
T ss_dssp             EECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHHH--------CHHHHHHHHHHHHHHTCEEEEECTTTHHHHSCTTSEE-
T ss_pred             EEEeccCCHHHHHHHHHHHHHcCCCEEEeccccc--------chHHHHHHHHhhccccceeeecccccceeccCCCCcc-
Confidence            5555545678889999999999999998865432        255555554   44568876532            34 


Q ss_pred             CHHHHHHHHHhcCCcEEEecc
Q 020428          213 EYDDFQRIKTAAGASSVMAAR  233 (326)
Q Consensus       213 s~~d~~~~l~~~Gad~VmiGr  233 (326)
                      |..-..++.+..|+|.+.++.
T Consensus       161 s~~v~~kL~RLaGaD~ih~~~  181 (291)
T d2d69a1         161 TMLALAKAARMIGVDQIHTGT  181 (291)
T ss_dssp             CHHHHHHHHHHHTCSEEECCC
T ss_pred             cHHHHHHHHHHcCCCeeecCC
Confidence            455567777788999999886

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=94.66  E-value=0.32  Score=40.69  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=69.2

Q ss_pred             cCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC--C---CChH---HHHHHHHHHHHcC
Q 020428           99 KDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL--L---KSSQ---DTVELARRIEKTG  170 (326)
Q Consensus        99 ~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~--g---~~~~---~~~e~a~~l~~~G  170 (326)
                      .|+|-|||+-. .       .. +.+--.+.+    ++.+++.+++||.|=+|.  |   .+..   ...+-++.+.+.|
T Consensus        19 ~GAdRIELc~~-l-------~~-GGlTPS~g~----i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G   85 (247)
T d1twda_          19 NGADRVELCAA-P-------KE-GGLTPSLGV----LKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG   85 (247)
T ss_dssp             TTCSEEEECBC-G-------GG-TCBCCCHHH----HHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEcCC-c-------cc-CCCCCCHHH----HHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence            49999999532 0       01 112222333    455566678999998887  3   2333   3556678889999


Q ss_pred             CcEEEEeecccCCCCCCcCCHHHHHHHHHhc-CCcEEEeC---CCCCHHHHHHHHHhcCCcEEE
Q 020428          171 VSALAVHGRKVADRPRDPAKWGEIADIVAAL-SIPVIANG---DVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       171 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~iPVi~nG---gI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +|+|++-.-+.+    +..|.+.++++.+.. ++|+...=   -+.++.++.+.+...|++.|.
T Consensus        86 ~dGvV~G~L~~d----g~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rIL  145 (247)
T d1twda_          86 FPGLVTGVLDVD----GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVL  145 (247)
T ss_dssp             CSEEEECCBCTT----SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEEEECCC----CCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEe
Confidence            999988655443    456778777776654 56665432   223444444444455666654

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR
species: Moorella thermoacetica [TaxId: 1525]

Probab=94.52  E-value=0.087  Score=44.74  Aligned_cols=97  Identities=11%  Similarity=0.113  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHH
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELA  163 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a  163 (326)
                      .|++...+-|+...+ |+|.||||.|            .......+.+..++..+++.+++|||+-++-       .+++
T Consensus        22 ~d~~~~~~~A~~m~~~GAdiIDIg~g------------~~~~~e~e~~~~vi~~l~~~~~vpiSIDT~~-------~~v~   82 (262)
T d1f6ya_          22 RDPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEVSNLTLCLDSTN-------IKAI   82 (262)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECSC-------HHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEeCCC------------CCCCCHHHHHHHHHHHHHHhhcCCccccCCc-------cHHH
Confidence            578877777766655 9999999854            3334455678888888888889999998852       3444


Q ss_pred             HHHHH--cCCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe
Q 020428          164 RRIEK--TGVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIAN  208 (326)
Q Consensus       164 ~~l~~--~G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n  208 (326)
                      +...+  .|++.|. |+|.        ..+++....+....+.+++..
T Consensus        83 ~aal~~~~Ga~iINdIsg~--------~~~~~~~~~~~~~~~~~v~~~  122 (262)
T d1f6ya_          83 EAGLKKCKNRAMINSTNAE--------REKVEKLFPLAVEHGAALIGL  122 (262)
T ss_dssp             HHHHHHCSSCEEEEEECSC--------HHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhhcccceeechhcc--------cchHHHHHHHHhcCCceEEEE
Confidence            44444  5888764 4432        113444445555667776644

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=94.45  E-value=0.33  Score=40.21  Aligned_cols=85  Identities=14%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             EEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChH
Q 020428           78 VVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQ  157 (326)
Q Consensus        78 ~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~  157 (326)
                      ++|=|=-.+.+++.+.++.+.+..+++.++.  |.-              ...=.++++++++. +.+++.-..+.+-+.
T Consensus         6 ~IvALD~~~~~~al~i~~~~~~~i~~iKvG~--~l~--------------~~~G~~~i~~l~~~-~~~IflD~K~~DIgn   68 (237)
T d1dbta_           6 PIIALDFASAEETLAFLAPFQQEPLFVKVGM--ELF--------------YQEGPSIVKQLKER-NCELFLDLKLHDIPT   68 (237)
T ss_dssp             CEEECCCSSHHHHHHHTGGGTTSCCEEEECH--HHH--------------HHHTHHHHHHHHHT-TCEEEEEEEECSCHH
T ss_pred             eEEEeccCCHHHHHHHHHHcCCcccEEEECH--HHH--------------hhcCHHHHHHHHhc-chheehhhhhccCch
Confidence            3555545667777777777766778999864  211              01112445666653 577777655554455


Q ss_pred             HHHHHHHHHHHcCCcEEEEeec
Q 020428          158 DTVELARRIEKTGVSALAVHGR  179 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r  179 (326)
                      +....+..+.+.|+|.+++|+-
T Consensus        69 Tv~~~~~~~~~~~~d~vtvh~~   90 (237)
T d1dbta_          69 TVNKAMKRLASLGVDLVNVHAA   90 (237)
T ss_dssp             HHHHHHHHHHTTTCSEEEEEGG
T ss_pred             HHHHHHHhhhccccceEEeecc
Confidence            5556667778889999999964

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.42  E-value=0.058  Score=46.33  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=59.0

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+...+.++.+.+.|+++|.+-|-+.+...-.... .+.++.+.+..  ++|||+.-+=.|.+++.++.   ++.|||
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad   98 (295)
T d1o5ka_          19 LDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN   98 (295)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCC
Confidence            4567788899999999999999998887654332222 23334444443  68998776666666655443   357999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      +||+.-..+..|
T Consensus        99 ~v~v~pP~y~~~  110 (295)
T d1o5ka_          99 GVLVVTPYYNKP  110 (295)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEEeCCCCCCC
Confidence            999987765543

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.24  E-value=0.31  Score=42.16  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCC------CCCcCCHHHHHHHHHhcCCcEEE--eCCCCCH
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADR------PRDPAKWGEIADIVAALSIPVIA--NGDVFEY  214 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~------~~~~~~~~~i~~i~~~~~iPVi~--nGgI~s~  214 (326)
                      ..+..+......   ...+..+..++.|.+.+.+|-......      ......|+.++++++..+.|++.  .|.+.++
T Consensus        96 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~  172 (329)
T d1p0ka_          96 NGLIFANLGSEA---TAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSK  172 (329)
T ss_dssp             SSCEEEEEETTC---CHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCH
T ss_pred             cceEEEeeccch---hHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchH
Confidence            344455443322   334556777889999999876543311      11233478899999999999885  8899999


Q ss_pred             HHHHHHHHhcCCcEEEec
Q 020428          215 DDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       215 ~d~~~~l~~~Gad~VmiG  232 (326)
                      +++.++. +.|+|++.++
T Consensus       173 ~~a~~~~-~~GaD~i~v~  189 (329)
T d1p0ka_         173 ASAGKLY-EAGAAAVDIG  189 (329)
T ss_dssp             HHHHHHH-HHTCSEEEEE
T ss_pred             HHHHHHH-hcCCCEEEEc
Confidence            9999998 5899999984

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=94.14  E-value=0.078  Score=45.41  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=58.2

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHH---HHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRI---KTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~---l~~~Gad  227 (326)
                      .|.+...+.++.+.+.|+++|.+.|-+.+...-... ..++++.+.+.+  ++||++.-+=.|.+++.++   .++.|||
T Consensus        21 iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad  100 (292)
T d1xkya1          21 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD  100 (292)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCC
Confidence            356778899999999999999998887765432222 123445555544  6898866555555554443   3468999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+.-..+..|
T Consensus       101 ~ilv~pP~~~~~  112 (292)
T d1xkya1         101 AVMLVAPYYNKP  112 (292)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEECCCCCCCC
Confidence            999987655443

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.06  E-value=0.14  Score=43.43  Aligned_cols=53  Identities=23%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             HHHHHHHHHH-hhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEec
Q 020428           87 AVRALTAAKM-VCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIR  151 (326)
Q Consensus        87 ~~~~~~aa~~-~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r  151 (326)
                      .+...+.|+. +..|++.+|||+|-|.            ....+.+..+++.+...+++|+++-..
T Consensus        39 ~d~~~~~A~~qv~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~~d~PlsIDT~   92 (260)
T d3bofa1          39 EEIVIKEAKTQVEKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYVSNVPLSLDIQ   92 (260)
T ss_dssp             SHHHHHHHHHHHHTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCEEEeecCCch------------hhhHHHHHHHHHHHHhcCCCCccccCC
Confidence            3445554544 4459999999987442            246788999999999999999999774

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.94  E-value=0.37  Score=39.55  Aligned_cols=141  Identities=8%  Similarity=0.053  Sum_probs=85.6

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .|+=+.|...+|+.+.+..  ...+.+.|-++..               ..+.....+.++.+++. +..+.+-+....+
T Consensus        62 ~~~dvHLMv~~P~~~i~~~--~~~~~~~i~~~~~---------------~~~~~~~~~~i~~i~~~-g~~~Gial~p~t~  123 (221)
T d1tqxa_          62 IFFDVHLMVEYPEKYVPLL--KTSNQLTFHFEAL---------------NEDTERCIQLAKEIRDN-NLWCGISIKPKTD  123 (221)
T ss_dssp             CEEEEEEESSCGGGGGGGC--TTSSEEEEEGGGG---------------TTCHHHHHHHHHHHHTT-TCEEEEEECTTSC
T ss_pred             hhhhhhHHhhhhhhhhhhh--hhcCceeEEeehh---------------ccccchhhHHHHHHHhc-CCeEEEeeccccc
Confidence            4677888888887665421  1113333333221               12344556667777665 5555555554332


Q ss_pred             hHHHHHHHHHHHHcCCcEEEEeecccC---CCCCCcCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          156 SQDTVELARRIEKTGVSALAVHGRKVA---DRPRDPAKWGEIADIVAAL-SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       156 ~~~~~e~a~~l~~~G~d~i~vh~r~~~---~~~~~~~~~~~i~~i~~~~-~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      .+.   +...+....+|.|.+.+-...   |.+ .+..++-++++++.. ++.|..-|||+ .+.+..+. ..|||.+++
T Consensus       124 ~~~---~~~~l~~~~~d~vlim~V~pG~~GQ~f-~~~~l~KI~~lr~~~~~~~I~VDGGIn-~~~i~~l~-~aGad~iV~  197 (221)
T d1tqxa_         124 VQK---LVPILDTNLINTVLVMTVEPGFGGQSF-MHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISA-SHGANIIVA  197 (221)
T ss_dssp             GGG---GHHHHTTTCCSEEEEESSCTTCSSCCC-CGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHH-HHTCCEEEE
T ss_pred             ccc---chhhcccccccEEEEEeeccccccccc-CcchhHHHHHHHHhcCCcceEEEcccC-HHhHHHHH-HcCCCEEEE
Confidence            222   223333456999987665432   222 233567777777653 68888999996 57888888 699999999


Q ss_pred             ccchhcCcc
Q 020428          232 ARGALWNAS  240 (326)
Q Consensus       232 Gr~~l~~P~  240 (326)
                      |++++.++.
T Consensus       198 GS~if~~~d  206 (221)
T d1tqxa_         198 GTSIFNAED  206 (221)
T ss_dssp             SHHHHTCSS
T ss_pred             ChHHHCCCC
Confidence            999766543

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.90  E-value=0.11  Score=44.65  Aligned_cols=86  Identities=16%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+...+.++.+.+.|+++|.+-|-+.+..+-.... .++++.+.+.+  ++||++.-+=.|.+++.++.   ++.|+|
T Consensus        25 iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad  104 (296)
T d1xxxa1          25 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH  104 (296)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCC
Confidence            4567788999999999999999988877654332221 23334444444  58888665555655554443   368999


Q ss_pred             EEEeccchhcCc
Q 020428          228 SVMAARGALWNA  239 (326)
Q Consensus       228 ~VmiGr~~l~~P  239 (326)
                      ++|+....+..|
T Consensus       105 ~v~i~~P~~~~~  116 (296)
T d1xxxa1         105 GLLVVTPYYSKP  116 (296)
T ss_dssp             EEEEECCCSSCC
T ss_pred             eEEEEeccCCCC
Confidence            999998877654

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=93.50  E-value=0.16  Score=42.53  Aligned_cols=72  Identities=15%  Similarity=0.298  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE----eCC--CCCHHHHHHHH------HhcCC
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA----NGD--VFEYDDFQRIK------TAAGA  226 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~----nGg--I~s~~d~~~~l------~~~Ga  226 (326)
                      ..+-|..+++.|||.|.+-..-..++.  .+....++.+++.+++||..    -||  +.|.+++..|+      ++.|+
T Consensus         9 s~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~   86 (247)
T d1twda_           9 SMECALTAQQNGADRVELCAAPKEGGL--TPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGF   86 (247)
T ss_dssp             SHHHHHHHHHTTCSEEEECBCGGGTCB--CCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCEEEEcCCcccCCC--CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence            355678899999999998654443332  34688999999999999864    233  66887776664      36899


Q ss_pred             cEEEec
Q 020428          227 SSVMAA  232 (326)
Q Consensus       227 d~VmiG  232 (326)
                      |||++|
T Consensus        87 dGvV~G   92 (247)
T d1twda_          87 PGLVTG   92 (247)
T ss_dssp             SEEEEC
T ss_pred             CeEEEE
Confidence            999999

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.54  Score=40.18  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=87.0

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK  154 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~  154 (326)
                      .|+.+ .+..|+-.    |++++. ||+.+=+...+-+..  .-|+-=.=+-..+.+.+.++.+.+++++||++-.-.|+
T Consensus        16 ~~~~~-~~~~D~~s----A~~~e~~Gf~a~~~sg~~~sa~--~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~Gy   88 (289)
T d1muma_          16 NPLQI-VGTINANH----ALLAQRAGYQAIYLSGGGVAAG--SLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGF   88 (289)
T ss_dssp             SSEEE-EECSSHHH----HHHHHHTTCSCEEECHHHHHHT--TSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCS
T ss_pred             CCEEe-ecCCCHHH----HHHHHHcCCCEEEhhHHHHHHH--ccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccc
Confidence            34443 34566543    344544 888776642111000  00111000224567778888888889999999999864


Q ss_pred             --ChHHHHHHHHHHHHcCCcEEEEeecccC---CCCCCc---CCHHHHHHHHHhc------CCcEEEeCCCCCHHHHHHH
Q 020428          155 --SSQDTVELARRIEKTGVSALAVHGRKVA---DRPRDP---AKWGEIADIVAAL------SIPVIANGDVFEYDDFQRI  220 (326)
Q Consensus       155 --~~~~~~e~a~~l~~~G~d~i~vh~r~~~---~~~~~~---~~~~~i~~i~~~~------~iPVi~nGgI~s~~d~~~~  220 (326)
                        +..+..+.++.++++|+.+|++-..+..   ..+.+.   ..-+.+.+|+...      ++-||+-=|-.....+.+.
T Consensus        89 G~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eA  168 (289)
T d1muma_          89 GSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAA  168 (289)
T ss_dssp             SSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHH
Confidence              3578899999999999999999766432   122221   1234556665432      3446665554432222222


Q ss_pred             H------HhcCCcEEEec
Q 020428          221 K------TAAGASSVMAA  232 (326)
Q Consensus       221 l------~~~Gad~VmiG  232 (326)
                      +      .+.|||+|++-
T Consensus       169 i~R~~aY~eAGAD~vf~~  186 (289)
T d1muma_         169 IERAQAYVEAGAEMLFPE  186 (289)
T ss_dssp             HHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHhhhcCCcEEEec
Confidence            2      35899999874

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=92.85  E-value=0.72  Score=39.07  Aligned_cols=105  Identities=17%  Similarity=0.236  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCC-ChHHHHHHHHHHHHcCCcEEEEeecccCCC---CC----CcCCH-HHHHHH
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLK-SSQDTVELARRIEKTGVSALAVHGRKVADR---PR----DPAKW-GEIADI  197 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~-~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~---~~----~~~~~-~~i~~i  197 (326)
                      ..+.+.+.++.|...+++||++-+-.|+ ++.+..+.++.++++|+.+|++-..+....   ..    ...+. +...++
T Consensus        60 t~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki  139 (275)
T d1s2wa_          60 SWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKI  139 (275)
T ss_dssp             -CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHH
T ss_pred             chhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHH
Confidence            3456777788888889999999999985 567888999999999999999977643211   11    12222 233444


Q ss_pred             HHh------cCCcEEEeCCCC----CHHHHHH-H--HHhcCCcEEEe
Q 020428          198 VAA------LSIPVIANGDVF----EYDDFQR-I--KTAAGASSVMA  231 (326)
Q Consensus       198 ~~~------~~iPVi~nGgI~----s~~d~~~-~--l~~~Gad~Vmi  231 (326)
                      +..      .++-|++--+-.    ..+++.+ .  ..+.|||+|++
T Consensus       140 ~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~  186 (275)
T d1s2wa_         140 KACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILM  186 (275)
T ss_dssp             HHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeee
Confidence            332      245566665542    2444432 1  22689999997

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.14  Score=43.80  Aligned_cols=85  Identities=13%  Similarity=0.082  Sum_probs=60.1

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHH---hcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIKT---AAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l~---~~Gad  227 (326)
                      .|.+...+.++.+.+.|+++|.+-|-+.+...-.... .+.++.+.+.+  ++||++..+=.+.+++.++.+   +.|+|
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad   98 (292)
T d2a6na1          19 VCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV   98 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCc
Confidence            3567788899999999999999998876644322221 23344445444  689998887778777776653   46999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      ++|+....+..
T Consensus        99 ~~~~~pP~~~~  109 (292)
T d2a6na1          99 GCLTVTPYYNR  109 (292)
T ss_dssp             EEEEECCCSSC
T ss_pred             ceeccCCCCCC
Confidence            99999766543

>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=1  Score=36.75  Aligned_cols=132  Identities=11%  Similarity=0.032  Sum_probs=82.1

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CC-CEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DV-AAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~-d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .|+.+|+++.+.+++.+-|+.+.. +- -.|-|-+    .     .          .-.+.++.+.+. ++++.+-.=  
T Consensus        54 ~~is~ev~~~~~~~mi~~A~~l~~~~~nv~IKIP~----t-----~----------~g~~ai~~L~~~-Gi~vn~Tav--  111 (220)
T d1l6wa_          54 GRLFAQVMATTAEGMVNDALKLRSIIADIVVKVPV----T-----A----------EGLAAIKMLKAE-GIPTLGTAV--  111 (220)
T ss_dssp             SEEEEECCCSSHHHHHHHHHHHHHHSTTCEEEEEC----S-----H----------HHHHHHHHHHHH-TCCEEEEEE--
T ss_pred             CeEEeEEeeehhhhhHHHHHHHHHhccccEEEeec----c-----c----------cccchhhhhhhc-ccchhhhhc--
Confidence            489999999999988887777655 32 2455522    1     1          112334444332 566554331  


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEe-ecccCCCCCCcCCHHHHHHHHH---hcC-CcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          154 KSSQDTVELARRIEKTGVSALAVH-GRKVADRPRDPAKWGEIADIVA---ALS-IPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~---~~~-iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      .+...    +..+.++|++++... ||..+....   .++.+.++.+   ..+ -.-|..+.+++.+++.++. ..|||.
T Consensus       112 fs~~Q----a~~Aa~aga~yvspy~gR~~d~g~d---g~~~i~~~~~~~~~~~~~tkIl~AS~R~~~~v~~~~-~~G~d~  183 (220)
T d1l6wa_         112 YGAAQ----GLLSALAGAEYVAPYVNRIDAQGGS---GIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCL-LAGCES  183 (220)
T ss_dssp             CSHHH----HHHHHHHTCSEEEEBHHHHHHTTSC---HHHHHHHHHHHHHHHCTTCEEEEBCCSSHHHHHHHH-HTTCSE
T ss_pred             ccHHH----HHHhhhcCCcEEeeeeeehhhcccC---ChHHHHHHHHHHHhcCCCceEeehhcCCHHHHHHHH-HcCCCE
Confidence            33333    445667899999864 775543322   3455555443   222 2356669999999999999 699999


Q ss_pred             EEeccchhc
Q 020428          229 VMAARGALW  237 (326)
Q Consensus       229 VmiGr~~l~  237 (326)
                      +-+.-.++.
T Consensus       184 iTip~~v~~  192 (220)
T d1l6wa_         184 ITLPLDVAQ  192 (220)
T ss_dssp             EEECHHHHH
T ss_pred             EEcCHHHHH
Confidence            998865544

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.59  E-value=0.25  Score=42.29  Aligned_cols=193  Identities=18%  Similarity=0.199  Sum_probs=109.2

Q ss_pred             cccCCCCHHHHHHHHHc---CCCeEE-eCceecccccccccccccccCcccccccCCcceeeecccC--CCCcEEEEECC
Q 020428           11 PMVRVGTLPFRLLAAQY---GADITY-GEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQ--ERNHVVFQMGT   84 (326)
Q Consensus        11 PM~g~t~~~fr~~~~~~---G~~l~~-te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~vQl~g   84 (326)
                      |..|.|-..|..+|.+.   |+|++- -|.+................           +.+-+...+  +..-..++|. 
T Consensus        28 Pk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~-----------~a~~~a~~~TG~~~lya~NiT-   95 (283)
T d1ykwa1          28 PNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLG-----------KARRKAEAETGEPKIYLANIT-   95 (283)
T ss_dssp             SCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHH-----------HHHHHHHHHHSSCCEEEEECC-
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHH-----------HHHHHHHHHhCCeeEEeeecC-
Confidence            88899999999999987   679886 34333333322111100000           000011111  2235778885 


Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-C---CCh---
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-L---KSS---  156 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g---~~~---  156 (326)
                      .+++++.+-++.+.+ |.+++=+|..   .    .|+            ..++.+++.+++||..=--. +   .++   
T Consensus        96 ~~~~em~~ra~~~~~~G~~~~mv~~~---~----~G~------------~a~~~l~~~~~lpi~~H~a~~g~~~r~~~~G  156 (283)
T d1ykwa1          96 DEVDSLMEKHDVAVRNGANALLINAL---P----VGL------------SAVRMLSNYTQVPLIGHFPFIASFSRMEKYG  156 (283)
T ss_dssp             CCGGGHHHHHHHHHHHTCCEEEEEHH---H----HCH------------HHHHHHHHHCSSCEEEECTTTHHHHCSTTSE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEecc---c----chH------------HHHHHHHhhcCCCeEeeeccceeeccCcCCC
Confidence            578888888888776 8887777631   0    111            23555666567887763221 1   000   


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHhcC-C
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL---------SIPVIANGDVFEYDDFQRIKTAAG-A  226 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---------~iPVi~nGgI~s~~d~~~~l~~~G-a  226 (326)
                      -+..-+++...=+|+|.+++-+-.  +++. . +.+.+.++...+         -+||+ +||+ ++..+..+++..| .
T Consensus       157 is~~vl~KL~RLaGaD~ih~~~~g--g~~~-~-~~e~~~~~~~~~~~~~~~~k~~~Pv~-sGG~-~~~~vp~~~~~~G~~  230 (283)
T d1ykwa1         157 IHSKVMTKLQRLAGLDAVIMPGFG--DRVM-T-PEEEVLENVIECTKPMGRIKPCLPVP-GGSD-SALTLQTVYEKVGNV  230 (283)
T ss_dssp             ECHHHHHHHHHHHTCSEEEEECSS--TTSS-S-CHHHHHHHHHHHHSCCTTCCCCEEEE-ECSB-CTTTHHHHHHHHCSS
T ss_pred             ccHHHHHHHHHHcCCCceeecCCc--cccc-C-chHHHHHHHHHhcCcccccCCceeec-cCCc-chhhhHHHHHhcCCc
Confidence            123347788888999999886432  2221 1 122222222221         25664 6776 4777778888888 5


Q ss_pred             cEEE-eccchhcCcc
Q 020428          227 SSVM-AARGALWNAS  240 (326)
Q Consensus       227 d~Vm-iGr~~l~~P~  240 (326)
                      |.+. +|-|++..|+
T Consensus       231 Dvil~aGGGi~gHP~  245 (283)
T d1ykwa1         231 DFGFVPGRGVFGHPM  245 (283)
T ss_dssp             CSEECBSSSSSSCTT
T ss_pred             eEEEecCcccccCCC
Confidence            6554 7888888886

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.19  E-value=0.072  Score=47.64  Aligned_cols=65  Identities=14%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .+.+..+.++|+|.|+|+.-..   +. ..-.+.++++++..++|||+ |+|.|++.+..   ..|||+|-+|
T Consensus       118 ~~r~~~l~~aGvd~ivID~A~G---h~-~~~i~~lK~ir~~~~~~vIa-GNVaT~e~~~~---l~gaD~VkVG  182 (368)
T d2cu0a1         118 IKRAIELDKAGVDVIVVDTAHA---HN-LKAIKSMKEMRQKVDADFIV-GNIANPKAVDD---LTFADAVKVG  182 (368)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCC---CC-HHHHHHHHHHHHTCCSEEEE-EEECCHHHHTT---CTTSSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEecCccc---ch-hhhhhhhhhhhhhcccceee-ccccCHHHHHh---hhcCcceeec
Confidence            4556778899999999864421   11 11246678888888999887 99999998753   4689999888

>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

Probab=91.81  E-value=0.17  Score=42.75  Aligned_cols=134  Identities=15%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             CcEEEEEC--CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh---cccCcEEEEe
Q 020428           76 NHVVFQMG--TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR---NLDVPVTCKI  150 (326)
Q Consensus        76 ~p~~vQl~--g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~---~~~~pv~vK~  150 (326)
                      .++++=|+  ..+++.+.   +++..|.+.+-||++.-               +++...++++.+|+   ..+.||.+-.
T Consensus        21 TKIIaTiGPas~~~~~l~---~li~aGvdv~RiN~SHg---------------~~e~~~~~i~~iR~~~~~~g~~v~i~~   82 (258)
T d1pkla2          21 ARIICTIGPSTQSVEALK---GLIQSGMSVARMNFSHG---------------SHEYHQTTINNVRQAAAELGVNIAIAL   82 (258)
T ss_dssp             SEEEEECCGGGCSHHHHH---HHHHHTEEEEEEETTSS---------------CHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEeeCCCcCCHHHHH---HHHHcCCCEEEEECCCC---------------CHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            46777774  23444433   34545999999998632               34555555555554   4477766655


Q ss_pred             cC-CCC--hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHH---HHHH
Q 020428          151 RL-LKS--SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDDFQ---RIKT  222 (326)
Q Consensus       151 r~-g~~--~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~---~~l~  222 (326)
                      .+ |+.  .+...+-.+...+.|+|++.++--      ..+.|...++++....  +++||+  -|.+.+.+.   ++++
T Consensus        83 d~~gp~~~t~kd~~di~~a~~~~vD~ialSFV------rs~~Dv~~ir~~l~~~~~~~~iia--KIE~~~al~nldeI~~  154 (258)
T d1pkla2          83 DTKGPPAVSAKDRVDLQFGVEQGVDMIFASFI------RSAEQVGDVRKALGPKGRDIMIIC--KIENHQGVQNIDSIIE  154 (258)
T ss_dssp             ECCCCCSSCHHHHHHHHHHHHHTCSEEEETTC------CSHHHHHHHHHHHCGGGTTSEEEE--EECSHHHHHTHHHHHH
T ss_pred             cccccccccccHHHHHHHHHhcCCCeEEEeCC------CCHHHHHHHHHHHHHcCCCCceEE--EecCchhhhhhhhHHh
Confidence            54 332  223333456667889999988521      1233555555555432  455665  677766554   4443


Q ss_pred             hcCCcEEEeccchhc
Q 020428          223 AAGASSVMAARGALW  237 (326)
Q Consensus       223 ~~Gad~VmiGr~~l~  237 (326)
                        -+|||||+||=|+
T Consensus       155 --~sDgImIaRGDLg  167 (258)
T d1pkla2         155 --ESDGIMVARGDLG  167 (258)
T ss_dssp             --HSSEEEECHHHHT
T ss_pred             --hCCeeeEechhhh
Confidence              3899999999665

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.19  E-value=0.36  Score=40.73  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             HHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-------------cC----CHHH
Q 020428          132 HDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-------------PA----KWGE  193 (326)
Q Consensus       132 ~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-------------~~----~~~~  193 (326)
                      .+.++.+++.-..-+..=+-.| ++.+.+.++++.+.++|+|.|-+-==..+....|             ..    -++.
T Consensus         5 ~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~   84 (261)
T d1rd5a_           5 SDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEM   84 (261)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhh
Confidence            4455666555333333444455 6789999999999999999999842112211112             11    2456


Q ss_pred             HHHHHHhcCCcEEEeCCCCCHHH--HHHHHHhcCCcEEEec
Q 020428          194 IADIVAALSIPVIANGDVFEYDD--FQRIKTAAGASSVMAA  232 (326)
Q Consensus       194 i~~i~~~~~iPVi~nGgI~s~~d--~~~~l~~~Gad~VmiG  232 (326)
                      ++++++..++|++..+.....-.  ++++ .+.|+||+++=
T Consensus        85 ~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~-~~~GvdG~Iip  124 (261)
T d1rd5a_          85 LREVTPELSCPVVLLSYYKPIMFRSLAKM-KEAGVHGLIVP  124 (261)
T ss_dssp             HHHHGGGCSSCEEEECCSHHHHSCCTHHH-HHTTCCEEECT
T ss_pred             hhcccccccCceeeeeeecchhhHHHHHH-HhcCceeeeec
Confidence            67777778899998877543321  2334 46899999873

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.28  Score=41.82  Aligned_cols=85  Identities=14%  Similarity=0.095  Sum_probs=56.8

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCC-HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAK-WGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Gad  227 (326)
                      .|.+...+.++.+.+.|+++|.+-|-+.+...-.... .++++.+++.+  ++|||+.-+=.|.+++.++.   ++.|+|
T Consensus        20 iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad   99 (295)
T d1hl2a_          20 LDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD   99 (295)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCc
Confidence            4567788999999999999999998877644322211 23344444444  68888654445555554443   468999


Q ss_pred             EEEeccchhcC
Q 020428          228 SVMAARGALWN  238 (326)
Q Consensus       228 ~VmiGr~~l~~  238 (326)
                      ++|+--..+..
T Consensus       100 ~~~v~~p~~~~  110 (295)
T d1hl2a_         100 AVSAVTPFYYP  110 (295)
T ss_dssp             EEEEECCCSSC
T ss_pred             eeeeeeccccC
Confidence            99998776543

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.26  Score=41.22  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             cEEEEEC--CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh---cccCcEEEEec
Q 020428           77 HVVFQMG--TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR---NLDVPVTCKIR  151 (326)
Q Consensus        77 p~~vQl~--g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~---~~~~pv~vK~r  151 (326)
                      ++++=|+  ..+++.+.   +++..|.+.+-|||+.-               +++...++++.+|+   ..+.|+.+-.-
T Consensus         5 KIIaTiGPas~~~~~l~---~li~aGvdv~RlN~SHg---------------~~~~~~~~i~~ir~~~~~~~~~~~I~~D   66 (246)
T d1e0ta2           5 KIVCTIGPKTESEEMLA---KMLDAGMNVMRLNFSHG---------------DYAEHGQRIQNLRNVMSKTGKTAAILLD   66 (246)
T ss_dssp             EEEEECCGGGCSHHHHH---HHHHHTEEEEEEETTSS---------------CHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             eEEEeeCCCcCCHHHHH---HHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            4555553  23444433   34445999999999632               34455555555554   34777776665


Q ss_pred             C-CCC-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHH---HHHHh
Q 020428          152 L-LKS-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQ---RIKTA  223 (326)
Q Consensus       152 ~-g~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~---~~l~~  223 (326)
                      + |+. .+.-.+..+...+.|+|+|.++--      ....|...++++.+..   +++||+  -|.+.+.+.   ++++ 
T Consensus        67 l~gp~ltekD~~~i~~a~~~~vD~ialSFV------r~~~Dv~~~r~~l~~~~~~~~~iia--KIE~~~al~nldeIi~-  137 (246)
T d1e0ta2          67 TKGPALAEKDKQDLIFGCEQGVDFVAASFI------RKRSDVIEIREHLKAHGGENIHIIS--KIENQEGLNNFDEILE-  137 (246)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHTCSEEEESSC------CSHHHHHHHHHHHHTTTCTTCEEEE--EECSHHHHHTHHHHHH-
T ss_pred             ccccccccCcchhhhHHHHcCCCEEEEcCC------CCHHHHHHHHHHHHHhCCCCceEEE--EecchhhhhchHHHHh-
Confidence            5 433 233345556677889999988621      1222455555544332   355654  466665544   4453 


Q ss_pred             cCCcEEEeccchhc
Q 020428          224 AGASSVMAARGALW  237 (326)
Q Consensus       224 ~Gad~VmiGr~~l~  237 (326)
                       -+|||||+||=|+
T Consensus       138 -~sDgImIaRGDLg  150 (246)
T d1e0ta2         138 -ASDGIMVARGDLG  150 (246)
T ss_dssp             -HSSEEEEEHHHHH
T ss_pred             -hcceEEEEccchh
Confidence             3799999999665

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.91  E-value=2.3  Score=35.26  Aligned_cols=118  Identities=15%  Similarity=0.103  Sum_probs=70.2

Q ss_pred             HHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC---------CChHHHH
Q 020428           91 LTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL---------KSSQDTV  160 (326)
Q Consensus        91 ~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g---------~~~~~~~  160 (326)
                      .+..+.+.+ |++.|||+-|.-             --..+...++++.+++. +.  .|+.-.|         .+.++.+
T Consensus        88 ~~y~~~~~~lGf~~iEiSdg~~-------------~i~~~~~~~~I~~~~~~-G~--~V~~EvG~K~~~~~~~~~~~~~i  151 (251)
T d1qwga_          88 DEFLNECEKLGFEAVEISDGSS-------------DISLEERNNAIKRAKDN-GF--MVLTEVGKKMPDKDKQLTIDDRI  151 (251)
T ss_dssp             HHHHHHHHHHTCCEEEECCSSS-------------CCCHHHHHHHHHHHHHT-TC--EEEEEECCSSHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCcc-------------CCCHHHHHHHHHHHHhC-CC--EEeecccCCCCCCccccCHHHHH
Confidence            334444555 999999986532             12344556667666654 32  3333223         2356678


Q ss_pred             HHHHHHHHcCCcEEEEeecccCC---C--CCCcCCHHHHHHHHHhcCCc-EEEeCCCCCHHHHHHHHHhcCC
Q 020428          161 ELARRIEKTGVSALAVHGRKVAD---R--PRDPAKWGEIADIVAALSIP-VIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       161 e~a~~l~~~G~d~i~vh~r~~~~---~--~~~~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                      +.++..-++||+.|++-+|....   -  ..+...++.+.+|.+.+++- +|.-  --..+.-..+++..|.
T Consensus       152 ~~~~~~LeaGA~~ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~~kiifE--AP~k~~q~w~I~~fGp  221 (251)
T d1qwga_         152 KLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFE--APQKSQQVAFILKFGS  221 (251)
T ss_dssp             HHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEE--CCSHHHHHHHHHHHCT
T ss_pred             HHHHHHHHCCCceeEeehhhcCCccceecCCCChhHHHHHHHHHhCCcccEEEE--CCChhHHHHHHHHhCC
Confidence            88888899999999999997532   1  23456778888888765432 3332  1234444445555554

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.72  E-value=1.7  Score=36.00  Aligned_cols=74  Identities=15%  Similarity=0.237  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      +..++++ +.+.||++|.|-  |-...+.|  +++.+..+++.+++||.--==|.++-++.+.. ..|||+|.+=-+++.
T Consensus        64 d~~~~a~-~~~~gA~aiSVL--Td~~~F~G--s~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~-~~GADaiLLI~~~L~  137 (247)
T d1a53a_          64 DPIEYSK-FMERYAVGLSIL--TEEKYFNG--SYETLRKIASSVSIPILMKDFIVKESQIDDAY-NLGADTVLLIVKILT  137 (247)
T ss_dssp             CHHHHHH-HHTTTCSEEEEE--CCCTTTCC--CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHH-HHTCSEEEEEGGGSC
T ss_pred             CHHHHHH-HHHhCCCeEEEe--cCcccccc--chHHHHHHHhccccceeecccccChHHHHHHH-Hhhcchhhhhhhhcc
Confidence            4667775 556899998874  22223333  58899999999999999999999999999999 699999988766663

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=1.8  Score=31.29  Aligned_cols=91  Identities=8%  Similarity=-0.039  Sum_probs=61.1

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      |-....+.+..+-+..+.-|..-    .   +..+..+.+.+...|.|.+.-....     ..-++.++++++..++|||
T Consensus        10 Dd~~~~~~l~~~L~~~g~~v~~a----~---~~~~al~~l~~~~~dlii~D~~mp~-----~~G~~~~~~~r~~~~~pii   77 (121)
T d1xhfa1          10 DELVTRNTLKSIFEAEGYDVFEA----T---DGAEMHQILSEYDINLVIMDINLPG-----KNGLLLARELREQANVALM   77 (121)
T ss_dssp             SCHHHHHHHHHHHHTTTCEEEEE----S---SHHHHHHHHHHSCCSEEEECSSCSS-----SCHHHHHHHHHHHCCCEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEE----C---ChHHHHHHHHhcCCCEEEeecccCC-----ccCcHHHHHHHhcCCCcEE
Confidence            33445555555555555543321    1   3344456666778898887643222     2237888999888899999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .--+-.+.++..+.+ +.||+...
T Consensus        78 ~lt~~~~~~~~~~a~-~~Ga~dyl  100 (121)
T d1xhfa1          78 FLTGRDNEVDKILGL-EIGADDYI  100 (121)
T ss_dssp             EEESCCSHHHHHHHH-HHTCSEEE
T ss_pred             EEECCCCHHHHHHHH-HcCCCEEE
Confidence            988889999999999 68998754

>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermus thermophilus [TaxId: 274]

Probab=90.45  E-value=3.4  Score=33.14  Aligned_cols=131  Identities=12%  Similarity=0.108  Sum_probs=82.1

Q ss_pred             CCcEEEEECCCCHHHHHHHHHHhhc-CCC-EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC
Q 020428           75 RNHVVFQMGTSDAVRALTAAKMVCK-DVA-AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL  152 (326)
Q Consensus        75 ~~p~~vQl~g~~~~~~~~aa~~~~~-~~d-~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~  152 (326)
                      ..|+.+|+.+.+.+.+.+-++.+.. .-. .|-|-+    .              ++ -.+.++.+.+. ++++.+-.  
T Consensus        60 ~~~is~ev~~~~~e~m~~~a~~l~~~~~ni~iKIP~----t--------------~~-G~~a~~~L~~~-Gi~vn~T~--  117 (211)
T d1wx0a1          60 GGPVSAEVTALEAEAMVAEGRRLAAIHPNIVVKLPT----T--------------EE-GLKACKRLSAE-GIKVNMTL--  117 (211)
T ss_dssp             TSCEEEECCCSSHHHHHHHHHHHHHHCTTEEEEEES----S--------------HH-HHHHHHHHHHT-TCCEEEEE--
T ss_pred             cCCeEEEEeeCcHHHHHHHHHHHhhcCCceEEEecc----c--------------hh-hhHHHHHHhhc-CCceeEEE--
Confidence            3589999999999998888887754 222 344422    1              11 12234455443 66665533  


Q ss_pred             CCChHHHHHHHHHHHHcCCcEEEE-eecccCCCCCCcCCHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHhcCC
Q 020428          153 LKSSQDTVELARRIEKTGVSALAV-HGRKVADRPRDPAKWGEIADIVAA-----LSIPVIANGDVFEYDDFQRIKTAAGA  226 (326)
Q Consensus       153 g~~~~~~~e~a~~l~~~G~d~i~v-h~r~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~d~~~~l~~~Ga  226 (326)
                      -.+...    +-.+.++|+++|.. -||..+....   .++.++++++.     .+. -|..+.+++.+++.++. ..||
T Consensus       118 vfs~~Q----a~~Aa~aga~yispyvgR~~d~g~d---~~~~~~~~~~~~~~~~~~t-kil~AS~R~~~~~~~~~-~~G~  188 (211)
T d1wx0a1         118 IFSANQ----ALLAARAGASYVSPFLGRVDDISWD---GGELLREIVEMIQVQDLPV-KVIAASIRHPRHVTEAA-LLGA  188 (211)
T ss_dssp             ECSHHH----HHHHHHTTCSEEEEBHHHHHHTTSC---HHHHHHHHHHHHHHTTCSC-EEEEBCCCSHHHHHHHH-HTTC
T ss_pred             ecCHHH----HHHHHHcCCCEEEEeeecchhcccc---chhHHHHHHHHHHhccccc-eeEeeecCCHHHHHHHH-HcCC
Confidence            234433    44566889999986 4776554432   25555555443     234 44558899999999999 6899


Q ss_pred             cEEEeccchh
Q 020428          227 SSVMAARGAL  236 (326)
Q Consensus       227 d~VmiGr~~l  236 (326)
                      |.|-+.-.++
T Consensus       189 d~vTi~~~v~  198 (211)
T d1wx0a1         189 DIATMPHAVF  198 (211)
T ss_dssp             SEEEECHHHH
T ss_pred             CEEEeCHHHH
Confidence            9998875443

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=90.27  E-value=0.36  Score=42.72  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=62.3

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCc
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIP  204 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iP  204 (326)
                      +++...+.+....... ..+..-.    ...+..+.++.+.++|++.|.+......   . ..-.+.++.+++..  ++|
T Consensus        84 ~ie~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~L~~ag~d~i~IDvAhG~---~-~~v~~~i~~ir~~~~~~~~  154 (362)
T d1pvna1          84 SIESQAAMVHAVKNFR-YLVGAGI----NTRDFRERVPALVEAGADVLCIDSSDGF---S-EWQKITIGWIREKYGDKVK  154 (362)
T ss_dssp             CHHHHHHHHHHHHTCC-CCCEEEE----CSSSHHHHHHHHHHHTCSEEEECCSCCC---B-HHHHHHHHHHHHHHGGGSC
T ss_pred             CHHHHHHHhhhhhhcc-ccccccc----chhhhHHHHHHHhhcCceEEeechhccc---h-hHHHHHHHHHHHhhcccee
Confidence            4666566666654432 2222222    1234567788899999999998543211   1 11245666775543  466


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEEEeccc
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                      || .|+|.|++.++.++ ..|||+|-||=|
T Consensus       155 Ii-AGNVaT~e~~~~L~-~aGaD~vkVGIG  182 (362)
T d1pvna1         155 VG-AGNIVDGEGFRYLA-DAGADFIKIGIG  182 (362)
T ss_dssp             EE-EEEECSHHHHHHHH-HHTCSEEEECSS
T ss_pred             ee-cccccCHHHHHHHH-HhCCcEEEeccc
Confidence            65 58999999999999 689999999955

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.12  E-value=1.3  Score=37.17  Aligned_cols=99  Identities=16%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHH-HhhcCCCEEEEccCCCccccccccccccccC---ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHH
Q 020428           85 SDAVRALTAAK-MVCKDVAAIDINMGCPKSFSVSGGMGAALLS---KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTV  160 (326)
Q Consensus        85 ~~~~~~~~aa~-~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~---~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~  160 (326)
                      .+++...+-++ ++.+|+|.|||..-+-.|       |+....   ..+.+..+++.+++ .++++||-++-       .
T Consensus        23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrP-------ga~~is~~eE~~Rl~pvi~~l~~-~~~~iSIDT~~-------~   87 (264)
T d1ad1a_          23 NNVESAVTRVKAMMDEGADIIDVGGVSTRP-------GHEMITVEEELNRVLPVVEAIVG-FDVKISVDTFR-------S   87 (264)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEESCCCST-------TCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC-------H
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCC-------CCCcCCHHHHHHhhhhHhhhhcc-cCcccchhhhh-------H
Confidence            36676665555 455699999998654333       222222   23445556666654 38889998753       4


Q ss_pred             HHHHHHHHcCCcEEE-EeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          161 ELARRIEKTGVSALA-VHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       161 e~a~~l~~~G~d~i~-vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      ++++.+.++|++.|- |++..        .|-+. .++....+.|+|.
T Consensus        88 eVa~~al~~Ga~iINDVs~g~--------~d~~~-~~~va~~~~~~il  126 (264)
T d1ad1a_          88 EVAEACLKLGVDIINDQWAGL--------YDHRM-FQVVAKYDAEIVL  126 (264)
T ss_dssp             HHHHHHHHTTCCEEEETTTTS--------SCTHH-HHHHHHTTCEEEE
T ss_pred             HHHHHHHhcCCcEeecccccc--------ccccH-HHHHhhcCcceee
Confidence            677788889999876 43322        12233 3444445677664

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.98  E-value=1.1  Score=35.86  Aligned_cols=130  Identities=8%  Similarity=0.007  Sum_probs=72.9

Q ss_pred             cCCCCcEEEEE-CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEE
Q 020428           72 HQERNHVVFQM-GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCK  149 (326)
Q Consensus        72 ~~~~~p~~vQl-~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK  149 (326)
                      .+.+.+++.-+ +.--|.....+++.+.+ ++|.+.+|..|-                .+    .+++..+..+..+..-
T Consensus        43 ~~~~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~G----------------~~----~l~~a~~~~~~~~l~V  102 (198)
T d1vqta1          43 AKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAG----------------YE----SVERALSATDKHVFVV  102 (198)
T ss_dssp             HTTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGC----------------HH----HHHHHHHHCSSEEEEE
T ss_pred             HHCCCcEEEEehhcCccHHHHHHHHHHhhccccEEEEEccCc----------------hh----hhhHhhhhccccceeE
Confidence            34445677666 45558888888888877 789999986321                11    2333333333333322


Q ss_pred             ecC-C--CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHH---------
Q 020428          150 IRL-L--KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDF---------  217 (326)
Q Consensus       150 ~r~-g--~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~---------  217 (326)
                      +-+ +  ...++..+.+..+.+.|++.++.. .             ....+++...-.++ .=||+ ++.-         
T Consensus       103 t~LtS~~~~~~~~~~~~~~l~~~g~~~vv~~-~-------------~~~~~~~~~~~~ii-tPGIr-~~~~~dDQkr~~t  166 (198)
T d1vqta1         103 VKLTSMEGSLEDYMDRIEKLNKLGCDFVLPG-P-------------WAKALREKIKGKIL-VPGIR-MEVKADDQKDVVT  166 (198)
T ss_dssp             CCCTTSCCCHHHHHHHHHHHHHHTCEEECCH-H-------------HHHHHTTTCCSCEE-ECCBC----------CCBC
T ss_pred             EEeeccccchHHHHHHHHHHHHhccCccccc-c-------------hhhhhhhhcccccc-ccccc-cCCCCCCcccccC
Confidence            222 2  234566777888888999875421 1             12334444432232 34553 1111         


Q ss_pred             HHHHHhcCCcEEEeccchhcC
Q 020428          218 QRIKTAAGASSVMAARGALWN  238 (326)
Q Consensus       218 ~~~l~~~Gad~VmiGr~~l~~  238 (326)
                      .+.+ ..|||.++|||+++..
T Consensus       167 ~~ai-~~GAd~iVVGR~It~s  186 (198)
T d1vqta1         167 LEEM-KGIANFAVLGREIYLS  186 (198)
T ss_dssp             HHHH-TTTCSEEEESHHHHTS
T ss_pred             HHHH-HcCCCEEEECCcccCC
Confidence            0245 4799999999999873

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.94  E-value=1.8  Score=31.04  Aligned_cols=90  Identities=13%  Similarity=-0.000  Sum_probs=59.6

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      |-....+++..+-+..+.-|..-    .   +..+....+++...|.|.+.-.-.     +..-++.++++++..++|||
T Consensus         8 Dd~~~~~~l~~~L~~~g~~v~~a----~---~~~eal~~~~~~~~dlillD~~mp-----~~~G~~~~~~i~~~~~~pvI   75 (117)
T d2a9pa1           8 DEKPISDIIKFNMTKEGYEVVTA----F---NGREALEQFEAEQPDIIILDLMLP-----EIDGLEVAKTIRKTSSVPIL   75 (117)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEE----S---SHHHHHHHHHHHCCSEEEECSSCS-----SSCHHHHHHHHHTTCCCCEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEE----C---CHHHHHHHHHhcCCCEEEeccccC-----CCCccHHHHHHHhCCCCCEE
Confidence            33445555555555445544321    2   333445566667788887764322     22237899999988889999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEE
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      .--+-.+.++..+.+ +.||+..
T Consensus        76 ~lt~~~~~~~~~~a~-~~Ga~d~   97 (117)
T d2a9pa1          76 MLSAKDSEFDKVIGL-ELGADDY   97 (117)
T ss_dssp             EEESCCSHHHHHHHH-HHTCSEE
T ss_pred             EEecCCCHHHHHHHH-HcCCCEE
Confidence            888888999999999 5898865

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.82  E-value=2.7  Score=33.99  Aligned_cols=131  Identities=16%  Similarity=0.136  Sum_probs=82.6

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhc-CCC-EEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCK-DVA-AIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL  153 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~-~~d-~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g  153 (326)
                      .|+.+|+.+.+++++.+.|+.+.. +-. .|-|-+    .              ++ -.+.++.+.+. ++++.+-.  -
T Consensus        54 ~~is~ev~~~~~~~m~~~a~~l~~~~~ni~VKIP~----t--------------~~-G~~ai~~L~~~-Gi~~n~Ta--v  111 (218)
T d1vpxa_          54 GPVSAEVVSLDYEGMVREARELAQISEYVVIKIPM----T--------------PD-GIKAVKTLSAE-GIKTNVTL--V  111 (218)
T ss_dssp             SCEEEECSCCSHHHHHHHHHHHHTTCTTEEEEEES----S--------------HH-HHHHHHHHHHT-TCCEEEEE--E
T ss_pred             CcchhhhccCcHHHHHHHHHHHhccccceEEEecc----c--------------cc-chHHHHHHHHc-CCceeeEE--e
Confidence            489999999999999988888765 322 444422    1              11 12334555443 66665533  2


Q ss_pred             CChHHHHHHHHHHHHcCCcEEEE-eecccCCCCCCcCCHHHHHHHHHh---c--CCcEEEeCCCCCHHHHHHHHHhcCCc
Q 020428          154 KSSQDTVELARRIEKTGVSALAV-HGRKVADRPRDPAKWGEIADIVAA---L--SIPVIANGDVFEYDDFQRIKTAAGAS  227 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~v-h~r~~~~~~~~~~~~~~i~~i~~~---~--~iPVi~nGgI~s~~d~~~~l~~~Gad  227 (326)
                      .+...    +-.+.++|+++|.. -||..+....   .++.+.++.+.   .  +..|++ +.+++.+++.+++ ..|||
T Consensus       112 fs~~Q----a~~Aa~aga~yispy~gR~~d~g~d---~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~-~~G~d  182 (218)
T d1vpxa_         112 FSPAQ----AILAAKAGATYVSPFVGRMDDLSND---GMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAA-LMGVD  182 (218)
T ss_dssp             CSHHH----HHHHHHHTCSEEEEBHHHHHHTTSC---HHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHH-HHTCS
T ss_pred             cCHHH----HHHHHhcCCCEEEeeecchhhhccc---chhhHHHHHHHHhhhcccceeee-eccCCHHHHHHHH-HcCCC
Confidence            34333    44556889999875 4776554332   24455444432   2  344444 8899999999999 69999


Q ss_pred             EEEeccchhc
Q 020428          228 SVMAARGALW  237 (326)
Q Consensus       228 ~VmiGr~~l~  237 (326)
                      .+-+.-.++.
T Consensus       183 ~iTip~~v~~  192 (218)
T d1vpxa_         183 IVTMPFAVLE  192 (218)
T ss_dssp             EEEECHHHHH
T ss_pred             EEEcCHHHHH
Confidence            9988755544

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.56  E-value=1.4  Score=35.35  Aligned_cols=124  Identities=13%  Similarity=0.063  Sum_probs=83.9

Q ss_pred             CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCC-----Ch
Q 020428           83 GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLK-----SS  156 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~-----~~  156 (326)
                      .+.+++.+.+.|+.+.+ |+.+|.+|.                   +    +.++++++.++.|+........     ..
T Consensus        28 ~~~~~~~v~~~A~a~~~~Ga~~i~~~~-------------------~----~~~~~ir~~~~~~~~~~~~~~~~~~~~~~   84 (230)
T d1yxya1          28 YSETGGIMPLMAKAAQEAGAVGIRANS-------------------V----RDIKEIQAITDLPIIGIIKKDYPPQEPFI   84 (230)
T ss_dssp             CCTTCCSHHHHHHHHHHHTCSEEEEES-------------------H----HHHHHHHTTCCSCEEEECBCCCTTSCCCB
T ss_pred             cCCChHHHHHHHHHHHHCCCeEEEecC-------------------h----hhHHHHHhhhhcchhhhhcccCCcceeee
Confidence            45667777777777666 889998852                   1    3366788888888776554321     11


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          157 QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       157 ~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      ....+....+..+|+|.+.++........ ...-++.++.+......+++. +++.|.++++.+. +.|+|.+.++
T Consensus        85 ~~~~~~~~~~~~~gad~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~-~~v~t~~~a~~a~-~~Gad~i~~~  157 (230)
T d1yxya1          85 TATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKYPNQLLM-ADISTFDEGLVAH-QAGIDFVGTT  157 (230)
T ss_dssp             SCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHCTTCEEE-EECSSHHHHHHHH-HTTCSEEECT
T ss_pred             chhHHHHHHHHhcCCCEEEEecccccccc-hhhHHHHHHHHHhcCCCceEe-cCCCCHHHHHHHH-hcCCCEEEee
Confidence            23345677788889999988765433221 222377787777766555444 4799999999998 6999999875

>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Galdieria partita [TaxId: 83374]

Probab=89.36  E-value=3.5  Score=35.53  Aligned_cols=142  Identities=6%  Similarity=-0.015  Sum_probs=90.0

Q ss_pred             CCcEEEEEC----CCCHHHHHHHHHHhhc-CCCEEEE--ccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEE
Q 020428           75 RNHVVFQMG----TSDAVRALTAAKMVCK-DVAAIDI--NMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVT  147 (326)
Q Consensus        75 ~~p~~vQl~----g~~~~~~~~aa~~~~~-~~d~idl--N~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~  147 (326)
                      +.|++..+.    |-+|+++++.+..+.. |.|.|-=  ++.-|        --+-+.++-+.+.+.+++..+.++....
T Consensus        17 ~RPL~~tiiKP~~Glsp~~~a~~~~e~a~GGvD~IKDDE~l~~q--------~~~p~~eRv~~~~~av~~a~~eTG~~~~   88 (328)
T d1bwva1          17 GRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQ--------PFMRWRERYLFTMEAVNKASAATGEVKG   88 (328)
T ss_dssp             SSCEEECBCSSSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSB--------TTBCHHHHHHHHHHHHHHHHHHHTSCCE
T ss_pred             CCCeEEeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeCCccccCC--------CccchHHHHHHHHHHHHHHHHHhCCeeE
Confidence            357887774    7889999999988776 8888732  33211        1122333444555556655566665555


Q ss_pred             EEecC-CCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHH---HhcCCcEEE--eC----------CC
Q 020428          148 CKIRL-LKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIV---AALSIPVIA--NG----------DV  211 (326)
Q Consensus       148 vK~r~-g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~---~~~~iPVi~--nG----------gI  211 (326)
                      .=..+ +.+.++..+-++.+++.|...+.+..- .        -|..+..++   +..++|+-+  +|          ||
T Consensus        89 ya~NiT~~~~~~m~~ra~~~~~~g~~~lm~~~~-~--------G~~~l~~la~~~~~~~l~iH~H~Ag~g~~t~~~~~Gi  159 (328)
T d1bwva1          89 HYLNVTAATMEEMYARANFAKELGSVIIMIDLV-I--------GYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGM  159 (328)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTTCSEEEEEGG-G--------CHHHHHHHHHHHHHTTCEEEEECTTTHHHHSCTTSEE
T ss_pred             EEEeccCCCHHHHHHHHHHHHhcCCeEEEEccc-c--------chHHHHHHHHHhhhcCeeecccccccccccCCCCCCc
Confidence            54554 356678888899999999998887532 1        244454443   344566532  22          23


Q ss_pred             CCHHHHHHHHHhcCCcEEEeccc
Q 020428          212 FEYDDFQRIKTAAGASSVMAARG  234 (326)
Q Consensus       212 ~s~~d~~~~l~~~Gad~VmiGr~  234 (326)
                       |..-+.++++..|+|.+.+++.
T Consensus       160 -s~~vl~KL~RLaGaD~ih~~t~  181 (328)
T d1bwva1         160 -NFRVICKWMRMAGVDHIHAGTV  181 (328)
T ss_dssp             -CHHHHHHHHHHHTCSEEECCCS
T ss_pred             -CHHHHHHHHHHcCCCccccCcc
Confidence             4456667887899999999864

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=4.1  Score=33.89  Aligned_cols=137  Identities=13%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             EEEECCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCc-EEEEecCC--C
Q 020428           79 VFQMGTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP-VTCKIRLL--K  154 (326)
Q Consensus        79 ~vQl~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~p-v~vK~r~g--~  154 (326)
                      +++|-..|..    .|+++.+ |+|.|=+.=  .... +-.|+-+-+--..+.+..-.++|++...-+ +.+-+.-+  .
T Consensus        17 i~~lTayD~~----~A~~~~~agvDiiLVGD--Slgm-v~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~   89 (262)
T d1m3ua_          17 FATITAYDYS----FAKLFADEGLNVMLVGD--SLGM-TVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA   89 (262)
T ss_dssp             EEEEECCSHH----HHHHHHHHTCCEEEECT--THHH-HTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS
T ss_pred             EEEEEcCCHH----HHHHHHHCCCCEEEEcC--cHHh-cccCCCCcceechHhHHHHHHHHHhccccceeEeccccccch
Confidence            5578777743    3445544 888876531  1111 112233334445677777788887766433 44455443  3


Q ss_pred             ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEe-----------CCC----CCHHHHHH
Q 020428          155 SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIAN-----------GDV----FEYDDFQR  219 (326)
Q Consensus       155 ~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~n-----------GgI----~s~~d~~~  219 (326)
                      +.++...-+..+.++|||+|-+-|.        ....+.|+.+.+. +|||++-           ||.    .|.+++.+
T Consensus        90 ~~~~a~~~a~~l~~~GAdaVKlEgg--------~~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~  160 (262)
T d1m3ua_          90 TPEQAFENAATVMRAGANMVKIEGG--------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQ  160 (262)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEECCCS--------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCCcEEEeccc--------hhHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCccccCccHHHHHH
Confidence            5667888888999999999977653        2236778887764 8999874           442    46676665


Q ss_pred             HH------HhcCCcEEEe
Q 020428          220 IK------TAAGASSVMA  231 (326)
Q Consensus       220 ~l------~~~Gad~Vmi  231 (326)
                      ++      ++.||.++.+
T Consensus       161 l~~~a~~le~AGaf~ivl  178 (262)
T d1m3ua_         161 LLSDALALEAAGAQLLVL  178 (262)
T ss_dssp             HHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHhhcceEEEE
Confidence            54      4678877764

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.07  E-value=0.62  Score=39.64  Aligned_cols=76  Identities=17%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CHHHHHHHHH-HhhcCCCEEEEccCCCcccccccccccccc---CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHH
Q 020428           86 DAVRALTAAK-MVCKDVAAIDINMGCPKSFSVSGGMGAALL---SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVE  161 (326)
Q Consensus        86 ~~~~~~~aa~-~~~~~~d~idlN~gcP~~~~~~~~~G~~l~---~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e  161 (326)
                      +++...+.|+ ++.+|+|.|||..-+-.|       |+...   ...+.+.-+++++++..+.+|||-++-       .+
T Consensus        36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrP-------ga~~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~~-------~e  101 (282)
T d1ajza_          36 SLIDAVKHANLMINAGATIIDVGGESTRP-------GAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSK-------PE  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCST-------TCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC-------HH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccccc-------cccCCcHHHHHHHHHHHHHHHhhcccceEEEEecC-------hH
Confidence            4565555555 445699999997544333       22222   234456777888877778889998863       35


Q ss_pred             HHHHHHHcCCcEEE
Q 020428          162 LARRIEKTGVSALA  175 (326)
Q Consensus       162 ~a~~l~~~G~d~i~  175 (326)
                      +|+.+.++|++.|.
T Consensus       102 Va~~al~~Ga~iIN  115 (282)
T d1ajza_         102 VIRESAKVGAHIIN  115 (282)
T ss_dssp             HHHHHHHTTCCEEC
T ss_pred             HHHHHHhcCceEEe
Confidence            67777788888773

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.98  E-value=1.1  Score=38.98  Aligned_cols=88  Identities=11%  Similarity=0.207  Sum_probs=62.4

Q ss_pred             cCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecc-------cC------------------------------CCC
Q 020428          143 DVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRK-------VA------------------------------DRP  185 (326)
Q Consensus       143 ~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~-------~~------------------------------~~~  185 (326)
                      +.+....+-...+.....++++..+++|+..+.+.--.       .+                              ...
T Consensus       121 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T d1tb3a1         121 EGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFP  200 (349)
T ss_dssp             TCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC------------
T ss_pred             CCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhcccccccccccc
Confidence            44556555554455567788888888888888754110       00                              000


Q ss_pred             CCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEec
Q 020428          186 RDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       186 ~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiG  232 (326)
                      .....|+.+..+++..+.|++.- ||.+++|+..+. +.|+|++.+.
T Consensus       201 ~~~~~~~~i~~l~~~~~~pii~K-gi~~~~da~~a~-~~G~d~i~vs  245 (349)
T d1tb3a1         201 KASFCWNDLSLLQSITRLPIILK-GILTKEDAELAM-KHNVQGIVVS  245 (349)
T ss_dssp             -CCCCHHHHHHHHTTCCSCEEEE-EECSHHHHHHHH-HTTCSEEEEC
T ss_pred             CCCCCHHHHHHHHHhcCCCcccc-hhhhhHHHHHHH-Hhhccceeee
Confidence            12346899999999999999874 678999999999 6999999997

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=88.95  E-value=1.4  Score=36.66  Aligned_cols=99  Identities=10%  Similarity=0.099  Sum_probs=69.6

Q ss_pred             HHHHhhcccCcEEEEecC-----CC--ChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEE
Q 020428          135 LTMLKRNLDVPVTCKIRL-----LK--SSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIA  207 (326)
Q Consensus       135 v~~v~~~~~~pv~vK~r~-----g~--~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~  207 (326)
                      .++++..-...|..-+..     |.  ...++.++++.++ .|+++|.|..-  ...+.|  +++.+..+++.+++||.-
T Consensus        32 ~~al~~~~~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~ye-~GA~aiSVLTd--~~~F~G--s~~~l~~vr~~~~~PiLr  106 (251)
T d1i4na_          32 LEVLSGKERVKIIAEFKKASPSAGDINADASLEDFIRMYD-ELADAISILTE--KHYFKG--DPAFVRAARNLTCRPILA  106 (251)
T ss_dssp             HHHHCCSSSCEEEEEECSBCSSSCBSCTTCCHHHHHHHHH-HHCSEEEEECC--CSSSCC--CTHHHHHHHTTCCSCEEE
T ss_pred             HHHHhcCCCCeEEEeeecCCCCCCCCcCCccHHHHHHHHh-cCCcceEEecc--cCCCCC--CHHHHHHHhhcccCchhh
Confidence            455544334556654432     21  2236788898885 69999987532  222323  478899999999999999


Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeccchhcCc
Q 020428          208 NGDVFEYDDFQRIKTAAGASSVMAARGALWNA  239 (326)
Q Consensus       208 nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P  239 (326)
                      -==|.++-++.+.. ..|||+|.+=-++|.+.
T Consensus       107 KDFIid~~QI~ea~-~~GADaiLLI~~~L~~~  137 (251)
T d1i4na_         107 KDFYIDTVQVKLAS-SVGADAILIIARILTAE  137 (251)
T ss_dssp             ECCCCSTHHHHHHH-HTTCSEEEEEGGGSCHH
T ss_pred             hhhhhCHHHHHHHH-hhccceEEeecccccHH
Confidence            99999999999998 69999998876666543

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.85  E-value=0.44  Score=40.28  Aligned_cols=103  Identities=16%  Similarity=0.119  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc-------------C----CH
Q 020428          130 LIHDILTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDP-------------A----KW  191 (326)
Q Consensus       130 ~~~~iv~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~-------------~----~~  191 (326)
                      .+.++.+.+++.-...+..=+-.| ++.+++.++++.+.++|||.|-+--=..+....||             .    -+
T Consensus         3 ri~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~   82 (267)
T d1qopa_           3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCF   82 (267)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hHHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhh
Confidence            355667777665444444444455 67889999999999999999998522222222221             1    24


Q ss_pred             HHHHHHHHhc-CCcEEEeCCCCC-----HHHHHHHHHhcCCcEEEec
Q 020428          192 GEIADIVAAL-SIPVIANGDVFE-----YDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       192 ~~i~~i~~~~-~iPVi~nGgI~s-----~~d~~~~l~~~Gad~VmiG  232 (326)
                      +.++++++.. ++|++.-|-...     .+...+-.+..|+||+.+-
T Consensus        83 ~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Gliip  129 (267)
T d1qopa_          83 EMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA  129 (267)
T ss_dssp             HHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET
T ss_pred             hhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceecc
Confidence            5667777764 799998875432     2444444557999999885

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.62  E-value=1.8  Score=36.13  Aligned_cols=93  Identities=10%  Similarity=0.037  Sum_probs=56.6

Q ss_pred             CcEEEEECCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCC
Q 020428           76 NHVVFQMGTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKS  155 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~  155 (326)
                      .+++|-|=-.+.+++.+.+..+.+...++.+|+  +.-    ..+|      ++.+.+.+..+....+.+|+.-+..++-
T Consensus        30 s~L~vALD~~~~~eal~li~~l~~~v~~~Kig~--~lf----~~~G------~~~~~~~~~~~~~~~~~~IflDlK~~DI   97 (267)
T d1dqwa_          30 TNLCASLDVRTTKELLELVEALGPKICLLKTHV--DIL----TDFS------MEGTVKPLKALSAKYNFLLFEDRKFADI   97 (267)
T ss_dssp             CCEEEECCCSSHHHHHHHHHHHGGGCSEEEECG--GGC----SSCC------TTTTHHHHHHHHHHHTCEEEEEEEECCC
T ss_pred             CCEEEEeccCCHHHHHHHHHHhCCcceEEEECH--HHH----hhcC------hHHHHHHHHHHHhccCceEecCccccCC
Confidence            468887766788888888888877788999874  211    0122      1223344444444447788766665543


Q ss_pred             hHHHHHH-HH---HHHHcCCcEEEEeeccc
Q 020428          156 SQDTVEL-AR---RIEKTGVSALAVHGRKV  181 (326)
Q Consensus       156 ~~~~~e~-a~---~l~~~G~d~i~vh~r~~  181 (326)
                      + ++.+- +.   .+...|+|.+|||+-..
T Consensus        98 p-nTv~~a~~a~~~~~~~~~d~vTvh~~~G  126 (267)
T d1dqwa_          98 G-NTVKLQYSAGVYRIAEWADITNAHGVVG  126 (267)
T ss_dssp             H-HHHHHHHHSTTTCHHHHCSEEEEESTTC
T ss_pred             c-HHHHHHHHHHHHHhhcCCcEEEecCcCC
Confidence            3 33321 22   34567899999996543

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.59  E-value=2.1  Score=35.84  Aligned_cols=83  Identities=12%  Similarity=0.173  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHh-hcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHH
Q 020428           86 DAVRALTAAKMV-CKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELAR  164 (326)
Q Consensus        86 ~~~~~~~aa~~~-~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~  164 (326)
                      +++...+.|+.+ .+|+|.|||..-+-.|....    -......+.+..+++.+++. +++|||-++-       .++|+
T Consensus        23 ~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~----is~~eE~~Rl~p~i~~~~~~-~~~iSIDT~~-------~~Va~   90 (270)
T d1eyea_          23 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGATR----VDPAVETSRVIPVVKELAAQ-GITVSIDTMR-------ADVAR   90 (270)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEECC------------------HHHHHHHHHHHHHT-TCCEEEECSC-------HHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCCCCCEe----eechhhcccccceeeeeccc-ceeechHhhh-------HHHHH
Confidence            566666555554 45999999975443331100    11233444566666666554 7788887752       46788


Q ss_pred             HHHHcCCcEEE-Eeecc
Q 020428          165 RIEKTGVSALA-VHGRK  180 (326)
Q Consensus       165 ~l~~~G~d~i~-vh~r~  180 (326)
                      .+.++|++.|. |+|..
T Consensus        91 ~al~~Ga~iINDvsg~~  107 (270)
T d1eyea_          91 AALQNGAQMVNDVSGGR  107 (270)
T ss_dssp             HHHHTTCCEEEETTTTS
T ss_pred             HHHhcCCeEEEeccccc
Confidence            88899999986 65553

>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.54  E-value=0.27  Score=41.66  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=77.3

Q ss_pred             CcEEEEEC--CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc----cCcEEEE
Q 020428           76 NHVVFQMG--TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL----DVPVTCK  149 (326)
Q Consensus        76 ~p~~vQl~--g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~----~~pv~vK  149 (326)
                      .++++=|+  ..+++.+.   +++..|.+.+-||++.-               +++...++++.+|+..    +.||.+-
T Consensus        21 TKIIaTiGPas~~~e~l~---~li~aG~dv~RlN~SHg---------------~~~~h~~~i~~iR~~~e~~~G~~v~i~   82 (265)
T d1a3xa2          21 TSIIGTIGPKTNNPETLV---ALRKAGLNIVRMNFSHG---------------SYEYHKSVIDNARKSEELYPGRPLAIA   82 (265)
T ss_dssp             SEEEEECCTTTCSHHHHH---HHHHHTEEEEEEETTSC---------------CHHHHHHHHHHHHHHHHHCCCSCCBCE
T ss_pred             ceEEEeeCCCCCCHHHHH---HHHHcCCCEEEEECCCC---------------CHHHHHHHHHHHHHHhhhccCCceeee
Confidence            46777775  23455443   34445999999999632               3455566666665432    5565443


Q ss_pred             ecC-CCC-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCCHHHH---HHHHH
Q 020428          150 IRL-LKS-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFEYDDF---QRIKT  222 (326)
Q Consensus       150 ~r~-g~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s~~d~---~~~l~  222 (326)
                      ..+ ++. .+...+-.+...+.|+|+|.++--      ..+.|...++++...  .+++||+  -|.+.+.+   .++++
T Consensus        83 ~dl~~p~ltekD~~di~~a~~~~vD~ialSFV------rs~~Di~~~r~~l~~~~~~~~Iia--KIE~~~al~NldeIi~  154 (265)
T d1a3xa2          83 LDTKGPALSEKDKEDLRFGVKNGVHMVFASFI------RTANDVLTIREVLGEQGKDVKIIV--KIENQQGVNNFDEILK  154 (265)
T ss_dssp             EECCCCSSCHHHHHHHHHHHHTTCCEECCTTC------CSHHHHHHHHHHHCGGGTTSCCEE--EECSHHHHTTHHHHHH
T ss_pred             ccccchhcccchHHHHHHhhhcccceEeeccC------CCHHHHHHHHHHHHHhcCCCeEEe--eccchHHHhChHHHHh
Confidence            333 222 223344456778899999977521      123355555555433  2566665  45555443   34453


Q ss_pred             hcCCcEEEeccchhc
Q 020428          223 AAGASSVMAARGALW  237 (326)
Q Consensus       223 ~~Gad~VmiGr~~l~  237 (326)
                        -+|||||+||=|+
T Consensus       155 --~sDgimIaRGDLg  167 (265)
T d1a3xa2         155 --VTDGVMVARGDLG  167 (265)
T ss_dssp             --HCSEEEEEHHHHH
T ss_pred             --hcceeEEEccchh
Confidence              3899999999664

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=88.50  E-value=0.35  Score=36.58  Aligned_cols=68  Identities=15%  Similarity=0.074  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh--cCCcEEEeCCCCC----HHHHHHHHHhcCCcEE
Q 020428          159 TVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA--LSIPVIANGDVFE----YDDFQRIKTAAGASSV  229 (326)
Q Consensus       159 ~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--~~iPVi~nGgI~s----~~d~~~~l~~~Gad~V  229 (326)
                      ..++++.+.+.++|.|.++.......   +.-.+.+.++++.  -++||++.|.+.+    +.+...-+++.|+|+|
T Consensus        43 ~e~iv~a~~~~~~d~v~lS~~~~~~~---~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~i  116 (137)
T d1ccwa_          43 QELFIKAAIETKADAILVSSLYGQGE---IDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRV  116 (137)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECSSTHH---HHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHhcCCCEEEEeeccccch---HHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEE
Confidence            46778888889999999987643311   1112334555554  2699998888865    5666666667898876

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=1  Score=37.21  Aligned_cols=67  Identities=16%  Similarity=0.107  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      +.+++|+.++++|||+||||.|.-.    .....+-+..+++.+++|+=..|..+ .+ +.++.....-+.|.
T Consensus        25 d~~~~a~~~~~~GadgITvH~R~Dr----RHI~~~Dv~~l~~~~~~~lNlE~a~~-~e-~i~ia~~~kP~qvt   91 (242)
T d1m5wa_          25 DPVQAAFIAEQAGADGITVHLREDR----RHITDRDVRILRQTLDTRMNLEMAVT-EE-MLAIAVETKPHFCC   91 (242)
T ss_dssp             CHHHHHHHHHTTTCSEEEEECCTTC----SSSCHHHHHHHHHHCSSEEEEEECSS-HH-HHHHHHHHCCSEEE
T ss_pred             CHHHHHHHHHHcCCCeEEeCCCCCc----cccchHHHHHHHHHhhcccccccccc-hh-HHHHHHHhccceEE
Confidence            6789999999999999999999432    23334556777888888877776654 33 33333234444443

>d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: O-succinylbenzoate synthase
species: Escherichia coli [TaxId: 562]

Probab=87.58  E-value=0.43  Score=39.01  Aligned_cols=123  Identities=9%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc-cCcEEEEecCCCChHHHHHH
Q 020428           84 TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL-DVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        84 g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~-~~pv~vK~r~g~~~~~~~e~  162 (326)
                      ..||+++.+-++.+ .|+..+-+=.|            .   .+++.=.+.++++++.+ ++.+.+-..-+|+.++++++
T Consensus        12 ~gdpde~~~~~~~~-~G~~~~KiKvG------------~---~~~~~D~~~i~~vr~~~pd~~L~vDaN~~w~~~~A~~~   75 (221)
T d1r6wa1          12 NGDPDDLILKLADM-PGEKVAKVRVG------------L---YEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQF   75 (221)
T ss_dssp             CSCHHHHHHHHHTC-CSSEEEEEECS------------S---SCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHH
T ss_pred             CCCHHHHHHHHHHc-CCCCeEEEeeC------------C---CCHHHHHHHHHHHHHHCCCCeEEEeCCCCCCHHHHHHH
Confidence            45888887766654 58877766433            1   23455566788888876 22333333336899999999


Q ss_pred             HHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          163 ARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       163 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ++.+++.+...|..    .++.   ..+.+...++++.+++||.+.=.+.+..+.  .+...++|.|++
T Consensus        76 ~~~l~~~~~~~ie~----~E~P---~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~--~~~~~~~d~v~i  135 (221)
T d1r6wa1          76 AKYVNPDYRDRIAF----LEEP---CKTRDDSRAFARETGIAIAWDESLREPDFA--FVAEEGVRAVVI  135 (221)
T ss_dssp             HHTSCTTTGGGEEE----EECC---BSSHHHHHHHHHHHCCCEEESGGGGSTTCC--CCCCTTEEEEEE
T ss_pred             HHHHHHhhcCCeee----ecch---hhhhhHHHHHhhcccchhhhccccchhHHH--HHHHhcCcEEEe
Confidence            99998865554432    1111   135677888999999999886666665432  222234565554

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=87.49  E-value=0.83  Score=38.63  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHHH-HcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH---HhcCC
Q 020428          154 KSSQDTVELARRIE-KTGVSALAVHGRKVADRPRDPA-KWGEIADIVAAL--SIPVIANGDVFEYDDFQRIK---TAAGA  226 (326)
Q Consensus       154 ~~~~~~~e~a~~l~-~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~--~iPVi~nGgI~s~~d~~~~l---~~~Ga  226 (326)
                      .|.+...+.++.+. +.|+++|.+-|-+.+...-... ..++++.+++.+  ++||++.=+=.+.+++.++.   ++.|+
T Consensus        21 iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Ga  100 (293)
T d1f74a_          21 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY  100 (293)
T ss_dssp             BCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCC
Confidence            35567778888775 4599999998877654322211 123344444443  68988654444555555443   46899


Q ss_pred             cEEEeccchhcC
Q 020428          227 SSVMAARGALWN  238 (326)
Q Consensus       227 d~VmiGr~~l~~  238 (326)
                      |++|+....+..
T Consensus       101 d~i~~~pP~~~~  112 (293)
T d1f74a_         101 DCLSAVTPFYYK  112 (293)
T ss_dssp             SEEECCCCCSSC
T ss_pred             CEeeccCccccc
Confidence            999998776643

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=1.2  Score=37.11  Aligned_cols=75  Identities=13%  Similarity=0.105  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhc
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~  237 (326)
                      ++.++++ +++.||++|.|..-  ...+.|  +++.+..+++.+++||.---=|.++.++.+.. ..|||+|.+=-++|.
T Consensus        69 ~p~~~a~-~~~~gA~aiSVLTe--~~~F~G--s~~~l~~v~~~~~~PiLrKDFIid~~QI~ear-~~GADavLLI~~~L~  142 (254)
T d1piia2          69 DPARIAA-IYKHYASAISVLTD--EKYFQG--SFNFLPIVSQIAPQPILCKDFIIDPYQIYLAR-YYQADACLLMLSVLD  142 (254)
T ss_dssp             CHHHHHH-HHTTTCSEEEEECC--STTTCC--CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHH-HTTCSEEEEETTTCC
T ss_pred             hhHHHHH-HHHhccCceEEecc--cccCCC--CHHHHHHHHhccccccchhcccCcHHHHHHHH-hhccchhhhhHhhhc
Confidence            4556665 66889999987532  222333  35778889999999999988899999999999 699999988777665


Q ss_pred             C
Q 020428          238 N  238 (326)
Q Consensus       238 ~  238 (326)
                      +
T Consensus       143 ~  143 (254)
T d1piia2         143 D  143 (254)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.32  E-value=2.6  Score=30.26  Aligned_cols=92  Identities=14%  Similarity=-0.001  Sum_probs=61.7

Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcE
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPV  205 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPV  205 (326)
                      .|-....++++..-+..+.-|..-    .   +..+....+.+...|.|.+.-.-..     ..-++.++++++...+||
T Consensus         7 DDd~~~~~~l~~~L~~~g~~v~~a----~---~~~eal~~l~~~~~dliilD~~mP~-----~~G~e~~~~ir~~~~~pi   74 (119)
T d1zh2a1           7 EDEQAIRRFLRTALEGDGMRVFEA----E---TLQRGLLEAATRKPDLIILDLGLPD-----GDGIEFIRDLRQWSAVPV   74 (119)
T ss_dssp             CSCHHHHHHHHHHHHTTTCEEEEE----S---SHHHHHHHHHHHCCSEEEEESEETT-----EEHHHHHHHHHTTCCCCE
T ss_pred             ECCHHHHHHHHHHHHHCCCEEEEe----C---CHHHHHHHHHhcCCCEEEeccccCC-----CCCchHHHHHHhccCCcE
Confidence            344555666666655555544321    2   2334445566677898877654322     223788999998888999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      |.--+-.+.++..+.+ +.||+..+
T Consensus        75 I~lt~~~~~~~~~~a~-~~Ga~dyl   98 (119)
T d1zh2a1          75 IVLSARSEESDKIAAL-DAGADDYL   98 (119)
T ss_dssp             EEEESCCSHHHHHHHH-HHTCSEEE
T ss_pred             EEEeccCCHHHHHHHH-HcCCCEEE
Confidence            9888888999999999 58988663

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.67  E-value=3.6  Score=33.99  Aligned_cols=148  Identities=16%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             CCCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecCC---CChHHH
Q 020428           83 GTSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLL---KSSQDT  159 (326)
Q Consensus        83 ~g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g---~~~~~~  159 (326)
                      -|-.+..+....+.+.+..|.+-+            ++|++.+-.++.+.+.++..++. ++++..--.+-   ......
T Consensus        21 kGlgl~~leD~Le~ag~yID~~K~------------g~Gt~~l~p~~~l~eKI~l~~~~-~V~v~~GGtlfE~a~~qg~~   87 (251)
T d1qwga_          21 KGLPPKFVEDYLKVCGDYIDFVKF------------GWGTSAVIDRDVVKEKINYYKDW-GIKVYPGGTLFEYAYSKGKF   87 (251)
T ss_dssp             SSCCHHHHHHHHHHHGGGCSEEEE------------CTTGGGGSCHHHHHHHHHHHHTT-TCEEEECHHHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHHHhhhhheeEEEe------------cCceeeecCHHHHHHHHHHHHHc-CCeEeCCcHHHHHHHHcCCH
Confidence            466777777777777777898888            46777777788899988888776 66665533210   001135


Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCH-HHHHHHHHhcCCcEEEeCC--------CCCHHH----HHHHHHhcCC
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKW-GEIADIVAALSIPVIANGD--------VFEYDD----FQRIKTAAGA  226 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~-~~i~~i~~~~~iPVi~nGg--------I~s~~d----~~~~l~~~Ga  226 (326)
                      .++.+.+.+.|.+.|-|+..+..-.   ..++ ++|+.+++. ++-|+.-=|        ..++++    +++.+ +.||
T Consensus        88 ~~y~~~~~~lGf~~iEiSdg~~~i~---~~~~~~~I~~~~~~-G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~L-eaGA  162 (251)
T d1qwga_          88 DEFLNECEKLGFEAVEISDGSSDIS---LEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDL-DAGA  162 (251)
T ss_dssp             HHHHHHHHHHTCCEEEECCSSSCCC---HHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHH-HHTC
T ss_pred             HHHHHHHHHcCCCEEEEcCCccCCC---HHHHHHHHHHHHhC-CCEEeecccCCCCCCccccCHHHHHHHHHHHH-HCCC
Confidence            6778888999999999987654321   1122 455555443 444543323        334444    55557 5899


Q ss_pred             cEEEe-ccchhcCcccccccCCC
Q 020428          227 SSVMA-ARGALWNASIFSSQGKL  248 (326)
Q Consensus       227 d~Vmi-Gr~~l~~P~lf~~~~~~  248 (326)
                      +.||+ +|-.-.+..++...+..
T Consensus       163 ~~ViiEarEsg~~~Gi~~~~g~~  185 (251)
T d1qwga_         163 DYVIIEGRESGKGKGLFDKEGKV  185 (251)
T ss_dssp             SEEEECCTTTCCSSTTBCTTSCB
T ss_pred             ceeEeehhhcCCccceecCCCCh
Confidence            99999 34333344555554443

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.53  E-value=2.8  Score=34.07  Aligned_cols=127  Identities=10%  Similarity=0.094  Sum_probs=71.0

Q ss_pred             CcEEEEECCCCHHHH-----HHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEE-
Q 020428           76 NHVVFQMGTSDAVRA-----LTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTC-  148 (326)
Q Consensus        76 ~p~~vQl~g~~~~~~-----~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~v-  148 (326)
                      .|+.|||.+-..+..     ....+.+++ ||++|||...              +...++.+.++-+.+. ..++.+.. 
T Consensus         2 ~p~~i~l~~fg~~~v~~~~~~~~l~~~a~~G~dgIEi~~~--------------~~~~~~~~~~l~~~~~-~~GL~i~~~   66 (250)
T d1yx1a1           2 HPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREE--------------LFAGPPDTEALTAAIQ-LQGLECVFS   66 (250)
T ss_dssp             CCEEEEGGGGCHHHHHHHCGGGGHHHHHHHTCSEEEEEGG--------------GCSSCCCHHHHHHHHH-HTTCEEEEE
T ss_pred             CCEEEEhhhcccccccccCHHHHHHHHHHhCCCEEEEecc--------------cCCCcchHHHHHHHHH-HcCCEEEEe
Confidence            489999965443322     222445555 9999998421              1122333333333333 23555432 


Q ss_pred             -----EecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCC----CCCHHHHHH
Q 020428          149 -----KIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGD----VFEYDDFQR  219 (326)
Q Consensus       149 -----K~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGg----I~s~~d~~~  219 (326)
                           ....+...++....+..+.+.|+..|.++.....    ...+++.+....+..++.+..--.    +.+.+++..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~g~~~----~~~~l~~l~~~a~~~Gv~l~iE~h~~~~~~~~~~~~~  142 (250)
T d1yx1a1          67 SPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLP----EQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLER  142 (250)
T ss_dssp             EEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCC----SSCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHH
T ss_pred             cccccccCchhhHHHHHHHHHHHHHhCCCEEEEeecccc----hhHHHHHHHHHHHHcCCEEEEEeCCCcccCCHHHHHH
Confidence                 1111222345667777888899999998764322    233577777777777887765432    234555555


Q ss_pred             HH
Q 020428          220 IK  221 (326)
Q Consensus       220 ~l  221 (326)
                      ++
T Consensus       143 ~~  144 (250)
T d1yx1a1         143 FF  144 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.35  E-value=2.5  Score=35.61  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=76.7

Q ss_pred             CcEEEEEC--CCCHHHHHHHHHHhhcCCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcc---------cC
Q 020428           76 NHVVFQMG--TSDAVRALTAAKMVCKDVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---------DV  144 (326)
Q Consensus        76 ~p~~vQl~--g~~~~~~~~aa~~~~~~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~---------~~  144 (326)
                      .++++=|+  ..+++.+.   +++..|.+.+-|||+.-               +++...++++.+|+..         -.
T Consensus        33 TKIIaTiGPas~~~e~l~---~Li~aGvnv~RiN~SHg---------------~~e~h~~~i~~iR~~~~~~~~~~il~~   94 (282)
T d2g50a2          33 TGIICTIGPASRSVETLK---EMIKSGMNVARMNFSHG---------------THEYHAETIKNVRTATESFASDPILYR   94 (282)
T ss_dssp             SEEEEECSTTTCSHHHHH---HHHHHTCCEEEEETTSS---------------CHHHHHHHHHHHHHHHHTTTTCTTTCC
T ss_pred             CcEEEEeCCCCCCHHHHH---HHHHcCCCEEEEeCCCC---------------CHHHHHHHHHHHHHHHHHhCCCceecc
Confidence            46777774  23444444   45556999999999632               3455566666665542         23


Q ss_pred             cEEEEecC-CCC-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc--CCcEEEeCCCCCHHH---H
Q 020428          145 PVTCKIRL-LKS-SQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL--SIPVIANGDVFEYDD---F  217 (326)
Q Consensus       145 pv~vK~r~-g~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~iPVi~nGgI~s~~d---~  217 (326)
                      |+.+..-. ++. ...-.+-.+...+.|+|+|.++--      ..+.|...++++.+..  +++||+  -|.+.+.   +
T Consensus        95 ~~~I~~d~~~~~l~~~di~di~~a~~~~vD~ialSFV------rs~~DI~~~r~~l~~~g~~~~Iia--KIE~~~al~Nl  166 (282)
T d2g50a2          95 PVAVALDTKGPAVSEKDIQDLKFGVEQDVDMVFASFI------RKAADVHEVRKILGEKGKNIKIIS--KIENHEGVRRF  166 (282)
T ss_dssp             CCEEEEECCCCSSCHHHHHHHHHHHHTTCSEEEETTC------CSHHHHHHHHHHHTTTTTTSEEEE--EECSHHHHHTH
T ss_pred             ccccccccccccccchHHHHHHHhhhccccceeeccc------CCHHHHHHHHHHHHHcCCCceEEE--eecchhhhhcc
Confidence            55554433 221 122344456777889999988521      1233455555555432  455665  3444433   3


Q ss_pred             HHHHHhcCCcEEEeccchhc
Q 020428          218 QRIKTAAGASSVMAARGALW  237 (326)
Q Consensus       218 ~~~l~~~Gad~VmiGr~~l~  237 (326)
                      .++++  -+|||||+||=|+
T Consensus       167 deIi~--~sDgIMIaRGDLg  184 (282)
T d2g50a2         167 DEILE--ASDGIMVARGDLG  184 (282)
T ss_dssp             HHHHH--HSSEEEEEHHHHH
T ss_pred             hhhcc--ccceeeeeccccc
Confidence            34453  3799999999775

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=86.27  E-value=1.3  Score=38.34  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             CCcEEEEEC-------CCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcE
Q 020428           75 RNHVVFQMG-------TSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPV  146 (326)
Q Consensus        75 ~~p~~vQl~-------g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv  146 (326)
                      +.|+++-|.       |.+.++..+.++.+.+ |.|.+++..|......        ....|....++.+.+++.+++||
T Consensus       208 ~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~--------~~~~~~~~~~~~~~ik~~~~~pv  279 (337)
T d1z41a1         208 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHAD--------INVFPGYQVSFAEKIREQADMAT  279 (337)
T ss_dssp             CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCC--------CCCCTTTTHHHHHHHHHHHCCEE
T ss_pred             cccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccc--------cccCCcccHHHHHHHHHhcCceE
Confidence            357777764       4578899999998877 9999999988654321        11123344566778888889999


Q ss_pred             EEEecCCCChHHHHHHHHHHHHcC-CcEEEEeecccCCCCCCcCCHHHHHHHHHh
Q 020428          147 TCKIRLLKSSQDTVELARRIEKTG-VSALAVHGRKVADRPRDPAKWGEIADIVAA  200 (326)
Q Consensus       147 ~vK~r~g~~~~~~~e~a~~l~~~G-~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~  200 (326)
                      .+--++ .+.    +.|+.+.+.| +|.|.+ ||..      -+|-++..++++.
T Consensus       280 i~~G~i-~~~----~~ae~~l~~g~~D~V~~-gR~~------iadPd~~~k~~~~  322 (337)
T d1z41a1         280 GAVGMI-TDG----SMAEEILQNGRADLIFI-GREL------LRDPFFARTAAKQ  322 (337)
T ss_dssp             EECSSC-CSH----HHHHHHHHTTSCSEEEE-CHHH------HHCTTHHHHHHHH
T ss_pred             EEeCCc-CCH----HHHHHHHHCCCcceehh-hHHH------HhCchHHHHHHhh
Confidence            874432 223    3444444455 887655 4521      1223445666654

>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: EAL domain-like
family: EAL domain
domain: Hypothetical protein YkuI, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.13  E-value=2.5  Score=34.65  Aligned_cols=97  Identities=12%  Similarity=0.101  Sum_probs=56.2

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEE-ecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHH---HHHHHHHh
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCK-IRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWG---EIADIVAA  200 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK-~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~---~i~~i~~~  200 (326)
                      ..++..+.++++.+++. ++-+.+. +..+...      ...+...++|+|-++..--......+....   .+..+.+.
T Consensus       128 ~~~~~~~~~~l~~L~~~-G~~lalddfG~~~~s------l~~L~~l~~d~IKld~s~i~~~~~~~~~~~~l~~l~~~a~~  200 (261)
T d2basa1         128 EGDIEQLYHMLAYYRTY-GIKIAVDNIGKESSN------LDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARK  200 (261)
T ss_dssp             CSCHHHHHHHHHHHHTT-TCEEEEEEETTTBCC------HHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhc-CceeeecCCccCccc------hhHHhhhhhhhhhcccccccccccchhhHHHHHHHHHHHHH
Confidence            45566667777776554 5555442 2222211      134455677777776543222222232333   33455667


Q ss_pred             cCCcEEEeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          201 LSIPVIANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       201 ~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      .+++||+. ||.|.++...+. ..|+|.++
T Consensus       201 ~~~~vIae-GVE~~~~~~~l~-~lg~d~~Q  228 (261)
T d2basa1         201 IGAALLYE-DIEANFQLQYAW-RNGGRYFQ  228 (261)
T ss_dssp             HTCEEEEE-CCCSHHHHHHHH-HTTEEEEC
T ss_pred             cCCEEEEE-eCCcHHHHHHHH-HcCCCEEE
Confidence            79998875 599999998888 69999775

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.78  E-value=4.5  Score=28.75  Aligned_cols=91  Identities=9%  Similarity=-0.035  Sum_probs=61.4

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVI  206 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi  206 (326)
                      |-....+++..+-+..+.-|..--       +..+..+.+++...|.+.+.-.-.+     ...++.++.+++...+|||
T Consensus         9 Dd~~~~~~l~~~L~~~g~~v~~a~-------~~~~a~~~~~~~~~dliilD~~mp~-----~~g~~~~~~~~~~~~~piI   76 (120)
T d1zgza1           9 DEPVTQARLQSYFTQEGYTVSVTA-------SGAGLREIMQNQSVDLILLDINLPD-----ENGLMLTRALRERSTVGII   76 (120)
T ss_dssp             SSHHHHHHHHHHHHHTTCEEEEES-------SHHHHHHHHHHSCCSEEEEESCCSS-----SCHHHHHHHHHTTCCCEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHhcCCCEEeeehhhcc-----chhHHHHHHHhccCCCeEE
Confidence            334455555555454455443321       3345556777788999888654332     2246788888888889999


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEE
Q 020428          207 ANGDVFEYDDFQRIKTAAGASSVM  230 (326)
Q Consensus       207 ~nGgI~s~~d~~~~l~~~Gad~Vm  230 (326)
                      ..-+-.+.++..+.+ +.||+...
T Consensus        77 ~lt~~~~~~~~~~a~-~~Ga~dyl   99 (120)
T d1zgza1          77 LVTGRSDRIDRIVGL-EMGADDYV   99 (120)
T ss_dssp             EEESSCCHHHHHHHH-HHTCSEEE
T ss_pred             EEEccCCHHHHHHHH-HCCCCEEE
Confidence            988889999999999 58988764

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=85.78  E-value=1  Score=38.01  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=46.8

Q ss_pred             HHHHHHHHH-HhhcCCCEEEEccCCCcccccccccccccc---CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHH
Q 020428           87 AVRALTAAK-MVCKDVAAIDINMGCPKSFSVSGGMGAALL---SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVEL  162 (326)
Q Consensus        87 ~~~~~~aa~-~~~~~~d~idlN~gcP~~~~~~~~~G~~l~---~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~  162 (326)
                      ++...+-++ ++.+|+|.|||..-+-.|.       +...   ...+.+..+++++++..++++||-++-       .++
T Consensus        41 ~~~a~~~a~~~i~~GAdiIDIGaeSTrPg-------~~~is~~eE~~rl~p~i~~~~~~~~~~iSIDT~~-------~~V  106 (273)
T d1tx2a_          41 VDAAVRHAKEMRDEGAHIIDIGGESTRPG-------FAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYK-------AEV  106 (273)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEESCC-----------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSC-------HHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEeeceecccc-------ccccCHHHHHHhhchhHHhhhccceEEEehHHhh-------HHH
Confidence            455555444 4456999999975443331       2222   223355566777777678899998863       467


Q ss_pred             HHHHHHcCCcEEE
Q 020428          163 ARRIEKTGVSALA  175 (326)
Q Consensus       163 a~~l~~~G~d~i~  175 (326)
                      |+.+.++|++.|.
T Consensus       107 a~~al~~G~~iIN  119 (273)
T d1tx2a_         107 AKQAIEAGAHIIN  119 (273)
T ss_dssp             HHHHHHHTCCEEE
T ss_pred             HHHHHHcCCeEEe
Confidence            7778888998775

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.72  E-value=2.9  Score=30.18  Aligned_cols=91  Identities=14%  Similarity=0.028  Sum_probs=60.6

Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCc
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIP  204 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iP  204 (326)
                      .|-..+.+.++.+-+..+..+..--       +..+..+.+++...|.|.+.-.-..     ..-+++++++++. .++|
T Consensus        10 DDd~~~~~~l~~~L~~~g~~v~~a~-------~~~~a~~~l~~~~~dlii~D~~mp~-----~~G~el~~~l~~~~~~~p   77 (123)
T d1krwa_          10 DDDSSIRWVLERALAGAGLTCTTFE-------NGNEVLAALASKTPDVLLSDIRMPG-----MDGLALLKQIKQRHPMLP   77 (123)
T ss_dssp             SSSHHHHHHHHHHHHHTTCEEEEES-------SSHHHHHHHTTCCCSEEEECCSSSS-----STTHHHHHHHHHHSSSCC
T ss_pred             ECCHHHHHHHHHHHHHCCCEEEEeC-------CHHHHHHHHHhCCCCEEEehhhcCC-----chHHHHHHHHHHhCCCCe
Confidence            4445566666666555555443311       2234455666677888877644322     2347888888775 4799


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      ||...+..+.++..+.+ +.|++..
T Consensus        78 iI~~t~~~~~~~~~~a~-~~Ga~dy  101 (123)
T d1krwa_          78 VIIMTAHSDLDAAVSAY-QQGAFDY  101 (123)
T ss_dssp             EEESCCCSCHHHHHHHH-HHTEEEE
T ss_pred             EEEEecCCCHHHHHHHH-HcCCCeE
Confidence            99999999999999999 5787764

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.26  E-value=2.3  Score=36.63  Aligned_cols=195  Identities=13%  Similarity=0.156  Sum_probs=109.3

Q ss_pred             cccCCCCHHHHHHHHHc---CCCeEE-eCceecccccccccccccccCcccccccCCcceeeecccCC--CCcEEEEECC
Q 020428           11 PMVRVGTLPFRLLAAQY---GADITY-GEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE--RNHVVFQMGT   84 (326)
Q Consensus        11 PM~g~t~~~fr~~~~~~---G~~l~~-te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~vQl~g   84 (326)
                      |..|.|-..+..+|.+.   |+|++- -|.+....+...........           +.+.+...++  ..-..+++.+
T Consensus        26 P~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~-----------~av~~a~~eTG~~k~y~~nit~   94 (325)
T d1wdda1          26 PKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCA-----------EAIYKSQAETGEIKGHYLNATA   94 (325)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHH-----------HHHHHHHHHHSSCCEEEEECCC
T ss_pred             CCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHH-----------HHHHHHHHhhCCceeEEeccCC
Confidence            87899999999999887   789886 34444333322111100000           0001111122  2347788888


Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh---cccCcEEEEecCCC-----C
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR---NLDVPVTCKIRLLK-----S  155 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~---~~~~pv~vK~r~g~-----~  155 (326)
                      .+++++.+-++.+.+ |++++-+|..   .    .|+.            .+..+++   ..++|+.. -|.++     +
T Consensus        95 ~~~~em~~ra~~a~e~G~~~~mi~~~---~----~G~~------------a~~~l~~~~~~~~l~ih~-Hra~~ga~tr~  154 (325)
T d1wdda1          95 GTCEEMIKRAVFARELGVPIVMHDYL---T----GGFT------------ANTSLAHYCRDNGLLLHI-HRAMHAVIDRQ  154 (325)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEEHH---H----HCHH------------HHHHHHHHHHHHTCEEEE-ECTTHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecc---c----ccHH------------HHHHHHHhhhhcCceeec-ccccccccccC
Confidence            889999999998876 9888877742   0    1111            1233332   23667666 34321     1


Q ss_pred             h---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc-----------------------C-CcEEEe
Q 020428          156 S---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL-----------------------S-IPVIAN  208 (326)
Q Consensus       156 ~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----------------------~-iPVi~n  208 (326)
                      +   -+..-+.+.+.=+|+|.+++.+-  .+++..  +-+.+..+.+.+                       . +|| .+
T Consensus       155 ~~~Gis~~vl~kl~RLaGaD~ih~~~~--~Gk~~~--~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv-~s  229 (325)
T d1wdda1         155 KNHGMHFRVLAKALRMSGGDHIHAGTV--VGKLEG--EREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPV-AS  229 (325)
T ss_dssp             SSSEECHHHHHHHHHHHCCSEEECCCS--SSSBCC--CHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEE-EE
T ss_pred             CCCCccHHHHHHHHHHcCCCccccCcc--ccCcCC--CHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeee-cC
Confidence            0   12334677777889999988544  222222  222222222211                       1 233 56


Q ss_pred             CCCCCHHHHHHHHHhcCCc-EEEeccchhcCcccc
Q 020428          209 GDVFEYDDFQRIKTAAGAS-SVMAARGALWNASIF  242 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad-~VmiGr~~l~~P~lf  242 (326)
                      ||+. +..+..+++..|-| .+++|-|++..|+=.
T Consensus       230 GG~~-~g~vp~~~~~~G~D~il~~GGGi~gHP~G~  263 (325)
T d1wdda1         230 GGIH-VWHMPALTEIFGDDSVLQFGGGTLGHPWGN  263 (325)
T ss_dssp             SSCC-GGGHHHHHHHHCSSSEEECSHHHHTSTTCH
T ss_pred             CCCC-HhHHHHHHHhcCCcEEEEcCcceecCCCcc
Confidence            7764 66677788778866 456788988888743

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.12  E-value=0.98  Score=39.35  Aligned_cols=87  Identities=14%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEE---eecccCCCCCCcC--CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcE
Q 020428          154 KSSQDTVELARRIEKTGVSALAV---HGRKVADRPRDPA--KWGEIADIVAALSIPVIANGDVFEYDDFQRIKTAAGASS  228 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~v---h~r~~~~~~~~~~--~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~  228 (326)
                      .+.+...+.|+.+.+.|++.+.-   -.||....+.++.  -+++++++++..++||+.  +|.+.+++..+.+ . +|.
T Consensus       105 ES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpvvT--dV~~~~~~~~~~e-~-~Di  180 (338)
T d1vr6a1         105 EGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVT--EALGEDDLPKVAE-Y-ADI  180 (338)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEE--ECSSGGGHHHHHH-H-CSE
T ss_pred             CCHHHHHHHHHHHHHhCccccccceecccccccccccchHHHHHHHHHHHhhcCceeEE--eccchhhhhhhhc-e-eee
Confidence            45677889999999999887752   2455544444443  357788999999999986  7999999998885 3 999


Q ss_pred             EEeccchhcCcccccc
Q 020428          229 VMAARGALWNASIFSS  244 (326)
Q Consensus       229 VmiGr~~l~~P~lf~~  244 (326)
                      ++||--++.|..|...
T Consensus       181 lQI~A~~~~n~~LL~~  196 (338)
T d1vr6a1         181 IQIGARNAQNFRLLSK  196 (338)
T ss_dssp             EEECGGGTTCHHHHHH
T ss_pred             EEechhhccCHHHHHH
Confidence            9999999889888765

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.77  E-value=4.7  Score=29.52  Aligned_cols=92  Identities=9%  Similarity=-0.028  Sum_probs=60.5

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPV  205 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPV  205 (326)
                      |-....+.++.+-+..+.-|.. .   .   +..+....+.+...|.|.+.-...+     ...+++++++++. .++||
T Consensus         8 Dd~~~~~~l~~~L~~~g~~v~~-a---~---~~~eAl~~l~~~~~dlvilD~~mp~-----~~G~e~~~~lr~~~~~~pi   75 (137)
T d1ny5a1           8 DDKVFRGLLEEYLSMKGIKVES-A---E---RGKEAYKLLSEKHFNVVLLDLLLPD-----VNGLEILKWIKERSPETEV   75 (137)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEE-E---S---SHHHHHHHHHHSCCSEEEEESBCSS-----SBHHHHHHHHHHHCTTSEE
T ss_pred             cCHHHHHHHHHHHHHCCCEEEE-E---C---CHHHHHHHhhccccccchHHHhhhh-----hhHHHHHHHHHHhCCCCCE
Confidence            3444555555554444554432 1   1   2344455666778999888754322     2247888888875 47999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      |..-+-.+.+++.+++ +.||+..+.
T Consensus        76 I~lT~~~~~~~~~~a~-~~Ga~dyl~  100 (137)
T d1ny5a1          76 IVITGHGTIKTAVEAM-KMGAYDFLT  100 (137)
T ss_dssp             EEEEETTCHHHHHHHH-TTTCCEEEE
T ss_pred             EEEECCCCHHHHHHHH-HcCCCEEEe
Confidence            9888888999999999 689887644

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=84.60  E-value=1.6  Score=36.67  Aligned_cols=80  Identities=14%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcC-CHHHHHHHHHhcCCcE-EEeCCCCCHHHHHHHH---HhcCCcE
Q 020428          154 KSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPA-KWGEIADIVAALSIPV-IANGDVFEYDDFQRIK---TAAGASS  228 (326)
Q Consensus       154 ~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~-~~~~i~~i~~~~~iPV-i~nGgI~s~~d~~~~l---~~~Gad~  228 (326)
                      .|.+...+.++.+.+.|+++|.+-|-|.+...-... ..+.++...+. ..|+ .+.|+..+ +++.++.   ++.|+|+
T Consensus        17 iD~~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~-~~~~i~gv~~~st-~~~i~~a~~a~~~Ga~~   94 (293)
T d1w3ia_          17 IDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV-TNKIIFQVGGLNL-DDAIRLAKLSKDFDIVG   94 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT-CSCEEEECCCSCH-HHHHHHHHHGGGSCCSE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhh-ccccccccccchh-hhhhhhhhhhhhhcccc
Confidence            456778889999999999999998877654322221 13344444443 3454 46677654 4444433   4689999


Q ss_pred             EEeccch
Q 020428          229 VMAARGA  235 (326)
Q Consensus       229 VmiGr~~  235 (326)
                      +++--..
T Consensus        95 ~~~~~P~  101 (293)
T d1w3ia_          95 IASYAPY  101 (293)
T ss_dssp             EEEECCC
T ss_pred             ccccccc
Confidence            9986554

>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

Probab=84.49  E-value=4.4  Score=32.16  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhcc-cCcEEEEecCCCC-hHHHHHHHHHHHHcCCcEEEEeecccCCCCCCc---------CC----HHHHH
Q 020428          131 IHDILTMLKRNL-DVPVTCKIRLLKS-SQDTVELARRIEKTGVSALAVHGRKVADRPRDP---------AK----WGEIA  195 (326)
Q Consensus       131 ~~~iv~~v~~~~-~~pv~vK~r~g~~-~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~---------~~----~~~i~  195 (326)
                      +.+..+.+...+ ++||++-+- |+. ..+....++.++++|+.+|++..+..  ...+.         .+    .+.+-
T Consensus        73 ~~~~a~~i~~~v~~iPviaD~d-G~g~~~nv~rtv~~~~~aG~agI~~~pk~g--~~~g~~~~~~e~a~~~~~~~~d~li  149 (197)
T d2p10a1          73 VVDMAREVLPVVRHTPVLAGVN-GTDPFMVMSTFLRELKEIGFAGVQNFPTVG--LIDGLFRQNLEETGMSYAQEVEMIA  149 (197)
T ss_dssp             HHHHHHHHGGGCSSSCEEEEEC-TTCTTCCHHHHHHHHHHHTCCEEEECSCGG--GCCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCceEEecC-CCCcchhHHHHHHHHHHcCCeEEecccccc--CccchhhhhHHHHHHHhccCccHHH
Confidence            344555555544 799999997 654 45788889999999999998754421  11110         01    11111


Q ss_pred             HHHHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          196 DIVAALSIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       196 ~i~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      . + +.+-. +..|=-.+.+.++.+. +.|||.+.+
T Consensus       150 i-A-Rtda~-~~~g~~~Ai~Ra~ay~-eAGAD~i~~  181 (197)
T d2p10a1         150 E-A-HKLDL-LTTPYVFSPEDAVAMA-KAGADILVC  181 (197)
T ss_dssp             H-H-HHTTC-EECCEECSHHHHHHHH-HHTCSEEEE
T ss_pred             H-H-HHhhh-hhccHHHHHHHHHHHH-HcCCCEEEE
Confidence            1 1 12222 2245557889999888 699999987

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.31  E-value=2.9  Score=33.33  Aligned_cols=89  Identities=10%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             HHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCC
Q 020428          133 DILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVF  212 (326)
Q Consensus       133 ~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~  212 (326)
                      ++++.+++. +.+|+.-+.+.+-+.+....++.+.+.|+|++++|+-..         .+.++...+..+..+++.--.+
T Consensus        37 ~~i~~l~~~-~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~G---------~~~l~~a~~~~~~~~l~Vt~Lt  106 (198)
T d1vqta1          37 KIFDELAKR-NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAG---------YESVERALSATDKHVFVVVKLT  106 (198)
T ss_dssp             HHHHHHHTT-TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGC---------HHHHHHHHHHCSSEEEEECCCT
T ss_pred             HHHHHHHHC-CCcEEEEehhcCccHHHHHHHHHHhhccccEEEEEccCc---------hhhhhHhhhhccccceeEEEee
Confidence            345555544 778877666555455556667778889999999998632         4566666666666666655454


Q ss_pred             C----HHH----HHHHHHhcCCcEEEec
Q 020428          213 E----YDD----FQRIKTAAGASSVMAA  232 (326)
Q Consensus       213 s----~~d----~~~~l~~~Gad~VmiG  232 (326)
                      |    .++    +.++. +.|+|+|+.|
T Consensus       107 S~~~~~~~~~~~~~~l~-~~g~~~vv~~  133 (198)
T d1vqta1         107 SMEGSLEDYMDRIEKLN-KLGCDFVLPG  133 (198)
T ss_dssp             TSCCCHHHHHHHHHHHH-HHTCEEECCH
T ss_pred             ccccchHHHHHHHHHHH-HhccCccccc
Confidence            3    222    33343 5788987654

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=84.30  E-value=3.4  Score=29.65  Aligned_cols=90  Identities=12%  Similarity=0.058  Sum_probs=53.1

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh---cCC
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA---LSI  203 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~---~~i  203 (326)
                      |-....+++..+-+..+.-+.. .   .   +..+....+.+...|.|.+.-.-..     ..-+++++++++.   .++
T Consensus         9 D~~~~~~~l~~~L~~~g~~v~~-a---~---~~~~al~~~~~~~~dlil~D~~mp~-----~dG~el~~~ir~~~~~~~i   76 (123)
T d1mb3a_           9 DNELNMKLFHDLLEAQGYETLQ-T---R---EGLSALSIARENKPDLILMDIQLPE-----ISGLEVTKWLKEDDDLAHI   76 (123)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEE-E---S---CHHHHHHHHHHHCCSEEEEESBCSS-----SBHHHHHHHHHHSTTTTTS
T ss_pred             CCHHHHHHHHHHHHHCCCEEEE-E---C---CHHHHHHHHHhCCCCEEEEEeccCC-----CcHHHHHHHHHhCCCcCCC
Confidence            4445566666665555554432 1   2   2334445556667888877644322     2247888999874   368


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      |||..-+..+.++..+++ +.|++++
T Consensus        77 Pii~lt~~~~~~~~~~~~-~~G~~~~  101 (123)
T d1mb3a_          77 PVVAVTAFAMKGDEERIR-EGGCEAY  101 (123)
T ss_dssp             CEEEEC------CHHHHH-HHTCSEE
T ss_pred             CeEEEEEecCHHHHHHHH-HcCCCEE
Confidence            999888888888888888 5899875

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=84.28  E-value=5.4  Score=28.39  Aligned_cols=90  Identities=14%  Similarity=0.095  Sum_probs=60.0

Q ss_pred             ChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCcE
Q 020428          127 KPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIPV  205 (326)
Q Consensus       127 ~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iPV  205 (326)
                      |-..+.++++.+-+..+..|..-    .   +..+....+.+...|.+.+.-.-.+     ..-++.++++++. ..+||
T Consensus         8 Dd~~~~~~l~~~L~~~G~~v~~a----~---~g~eal~~l~~~~~dliilD~~mP~-----~~G~e~~~~i~~~~~~~pv   75 (119)
T d2pl1a1           8 DNALLRHHLKVQIQDAGHQVDDA----E---DAKEADYYLNEHIPDIAIVDLGLPD-----EDGLSLIRRWRSNDVSLPI   75 (119)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEE----S---SHHHHHHHHHHSCCSEEEECSCCSS-----SCHHHHHHHHHHTTCCSCE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEE----C---CHHHHHHHHHhcccceeehhccCCC-----chhHHHHHHHHhcCcccce
Confidence            34455556666555555544321    1   2334455666777888877654322     1237889999875 48999


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          206 IANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       206 i~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      |.--+-.+.++..+.+ +.||++.
T Consensus        76 i~lt~~~~~~~~~~a~-~~Ga~~y   98 (119)
T d2pl1a1          76 LVLTARESWQDKVEVL-SAGADDY   98 (119)
T ss_dssp             EEEESCCCHHHHHHHH-HTTCSEE
T ss_pred             EeeeccCCHHHHHHHH-HcCCCEE
Confidence            9999999999999999 6899885

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.03  E-value=4.9  Score=29.29  Aligned_cols=92  Identities=14%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             cCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCC
Q 020428          125 LSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSI  203 (326)
Q Consensus       125 ~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~i  203 (326)
                      ..|-....+++..+-+..+.-+..-    .+..+   ..+.+.+...|.|.+.-.-.+     ..-+++++++++. ..+
T Consensus        14 VDD~~~~~~~l~~~L~~~g~~v~~a----~~g~e---a~~~~~~~~~dlillD~~mP~-----~dG~el~~~ir~~~~~~   81 (133)
T d2ayxa1          14 VDDHPINRRLLADQLGSLGYQCKTA----NDGVD---ALNVLSKNHIDIVLSDVNMPN-----MDGYRLTQRIRQLGLTL   81 (133)
T ss_dssp             EESSHHHHHHHHHHHHHHTSEEEEE----CCSHH---HHHHHHHSCCSEEEEEESSCS-----SCCHHHHHHHHHHHCCS
T ss_pred             EECCHHHHHHHHHHHHHcCCEEEEE----CcHHH---HHHHHhccCceEEEEeccCCC-----CCHHHHHHHHHHhCCCC
Confidence            3455566667776666556554331    12233   345566778998888765433     2247888888875 378


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          204 PVIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       204 PVi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      ||+..-+-.+.++..+++ ..|++.+
T Consensus        82 pii~lt~~~~~~~~~~~~-~~G~~~~  106 (133)
T d2ayxa1          82 PVIGVTANALAEEKQRCL-ESGMDSC  106 (133)
T ss_dssp             CEEEEESSTTSHHHHHHH-HCCCEEE
T ss_pred             CEEEEeccCCHHHHHHHH-HcCCCEE
Confidence            999888888889999999 5898875

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=83.63  E-value=2.4  Score=35.06  Aligned_cols=80  Identities=23%  Similarity=0.257  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhcccCcEEEEecC-CCChHHHHHHH
Q 020428           86 DAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRL-LKSSQDTVELA  163 (326)
Q Consensus        86 ~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~-g~~~~~~~e~a  163 (326)
                      +++.+..+++.+.+ |+|.|-+..  |              .+.+   +.-+.+...+..||.+-... +.+++++.+..
T Consensus       155 ~~~~v~~aaria~ElGaDivK~~~--p--------------~~~~---~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~  215 (251)
T d1ojxa_         155 APEIVAYAARIALELGADAMKIKY--T--------------GDPK---TFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQV  215 (251)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEECC--C--------------SSHH---HHHHHHHHTTTSCEEEECCSCCSSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEecC--C--------------CcHH---HHHHHHHhcCCCceEEeCCCCCCCHHHHHHHH
Confidence            35666666666666 666666643  1              1112   22223344446676554433 35677888888


Q ss_pred             HHHHHcCCcEEEEeecccCCCC
Q 020428          164 RRIEKTGVSALAVHGRKVADRP  185 (326)
Q Consensus       164 ~~l~~~G~d~i~vh~r~~~~~~  185 (326)
                      +.+-++|+.++.+ ||...|..
T Consensus       216 ~~a~~~Ga~G~~~-GRni~q~~  236 (251)
T d1ojxa_         216 EGVLEAGALGIAV-GRNVWQRR  236 (251)
T ss_dssp             HHHHHTTCCEEEE-SHHHHTST
T ss_pred             HHHHHCCCcEEee-chhhhCcC
Confidence            8888899998754 78777653

>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Galdieria partita [TaxId: 83374]

Probab=83.61  E-value=10  Score=32.34  Aligned_cols=195  Identities=12%  Similarity=0.145  Sum_probs=108.5

Q ss_pred             cccCCCCHHHHHHHHHc---CCCeEE-eCceecccccccccccccccCcccccccCCcceeeecccCC--CCcEEEEECC
Q 020428           11 PMVRVGTLPFRLLAAQY---GADITY-GEEIIDHKLLKCERRVNEYIGSTDFVEKGTDSVVFRTCHQE--RNHVVFQMGT   84 (326)
Q Consensus        11 PM~g~t~~~fr~~~~~~---G~~l~~-te~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~vQl~g   84 (326)
                      |..|.|-..|..++.+.   |+|++- -|.+...++...........           +.+-+...++  ..-..++|.+
T Consensus        27 P~~Glsp~~~a~~~~e~a~GGvD~IKDDE~l~~q~~~p~~eRv~~~~-----------~av~~a~~eTG~~~~ya~NiT~   95 (328)
T d1bwva1          27 PKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTM-----------EAVNKASAATGEVKGHYLNVTA   95 (328)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHH-----------HHHHHHHHHHTSCCEEEEECCC
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCccchHHHHHHHH-----------HHHHHHHHHhCCeeEEEEeccC
Confidence            87799999999999887   789986 45444444332111110000           0011111122  2347789988


Q ss_pred             CCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhh---cccCcEEEEecCCCC-----
Q 020428           85 SDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKR---NLDVPVTCKIRLLKS-----  155 (326)
Q Consensus        85 ~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~---~~~~pv~vK~r~g~~-----  155 (326)
                      .+++.+.+.++.+.+ |...+=+|+-+        |+            ..+..+++   ..++++-. -|.++.     
T Consensus        96 ~~~~~m~~ra~~~~~~g~~~lm~~~~~--------G~------------~~l~~la~~~~~~~l~iH~-H~Ag~g~~t~~  154 (328)
T d1bwva1          96 ATMEEMYARANFAKELGSVIIMIDLVI--------GY------------TAIQTMAKWARDNDMILHL-HRAGNSTYSRQ  154 (328)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEEGGG--------CH------------HHHHHHHHHHHHTTCEEEE-ECTTTHHHHSC
T ss_pred             CCHHHHHHHHHHHHhcCCeEEEEcccc--------ch------------HHHHHHHHHhhhcCeeecc-cccccccccCC
Confidence            899999999998887 66666665311        11            11333322   22455433 444421     


Q ss_pred             h---HHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc------------------------CCcEEEe
Q 020428          156 S---QDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL------------------------SIPVIAN  208 (326)
Q Consensus       156 ~---~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~------------------------~iPVi~n  208 (326)
                      .   -+..-+++.+.=+|+|.+++-+-  .++..+.  -+....+.+.+                        -+|| .+
T Consensus       155 ~~~Gis~~vl~KL~RLaGaD~ih~~t~--~Gk~~~~--~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~k~~~Pv-~S  229 (328)
T d1bwva1         155 KNHGMNFRVICKWMRMAGVDHIHAGTV--VGKLEGD--PIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPV-AS  229 (328)
T ss_dssp             TTSEECHHHHHHHHHHHTCSEEECCCS--SSSSCCC--HHHHHHHHHHHHCSEECCBTTTTBCSCEECTTCCCCEEE-EE
T ss_pred             CCCCcCHHHHHHHHHHcCCCccccCcc--ccCcCCC--HHHHHHHHHHHhhcccccchhcCcccccccccCCCccee-cC
Confidence            1   12344566667789999987433  2222221  22222222111                        1344 55


Q ss_pred             CCCCCHHHHHHHHHhcCCc-EEEeccchhcCccccc
Q 020428          209 GDVFEYDDFQRIKTAAGAS-SVMAARGALWNASIFS  243 (326)
Q Consensus       209 GgI~s~~d~~~~l~~~Gad-~VmiGr~~l~~P~lf~  243 (326)
                      ||+. +..+..+++..|-| .+++|-|++..|+=..
T Consensus       230 gG~~-~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~a  264 (328)
T d1bwva1         230 GGIH-AGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQ  264 (328)
T ss_dssp             SSCC-TTSHHHHHHHHCSSCEEECSHHHHTCTTCHH
T ss_pred             CCCc-HhHHHHHHHHhCCeEEEecCcccccCCCccc
Confidence            7764 67777788788876 5568999999998543

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=83.36  E-value=0.84  Score=38.53  Aligned_cols=97  Identities=9%  Similarity=0.021  Sum_probs=59.7

Q ss_pred             HHHHhhcccCcEEEEecCC-CChHHHHHHHHHHHHcCCcEEEEeecccCCCCCC-----------------cCCHHHHHH
Q 020428          135 LTMLKRNLDVPVTCKIRLL-KSSQDTVELARRIEKTGVSALAVHGRKVADRPRD-----------------PAKWGEIAD  196 (326)
Q Consensus       135 v~~v~~~~~~pv~vK~r~g-~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~-----------------~~~~~~i~~  196 (326)
                      .+.+++.-..-+..=+-.| ++.+.+.++++.+.+ |+|.|-+-==..+....|                 .--++.+++
T Consensus         7 F~~~k~~~~~ali~yitaG~P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~   85 (271)
T d1ujpa_           7 FAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVRE   85 (271)
T ss_dssp             HHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHH
Confidence            4555544222233344455 578889999999875 999998731111111111                 112567788


Q ss_pred             HHHhcCCcEEEeCCCCC-----HHHHHHHHHhcCCcEEEec
Q 020428          197 IVAALSIPVIANGDVFE-----YDDFQRIKTAAGASSVMAA  232 (326)
Q Consensus       197 i~~~~~iPVi~nGgI~s-----~~d~~~~l~~~Gad~VmiG  232 (326)
                      +++..++|++.-|-...     .+.+.+-....|+||+.+=
T Consensus        86 ~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliip  126 (271)
T d1ujpa_          86 VRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILP  126 (271)
T ss_dssp             HHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECT
T ss_pred             HhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEecc
Confidence            88888999999887554     2444444457899999874

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.66  E-value=4.4  Score=33.11  Aligned_cols=76  Identities=13%  Similarity=0.087  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHh-----cCCcEEEec
Q 020428          158 DTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAALSIPVIANGDVFEYDDFQRIKTA-----AGASSVMAA  232 (326)
Q Consensus       158 ~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~iPVi~nGgI~s~~d~~~~l~~-----~Gad~VmiG  232 (326)
                      --..+|+.|.+.|++ |.+++|.          -+.++++.+...--....+|+++.++++++++.     .+.|.++-.
T Consensus        18 IG~aia~~la~~Ga~-V~i~~r~----------~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnn   86 (250)
T d1ydea1          18 IGAGIVRAFVNSGAR-VVICDKD----------ESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNN   86 (250)
T ss_dssp             HHHHHHHHHHHTTCE-EEEEESC----------HHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHHHHHHCCCE-EEEEECC----------HHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence            346789999999996 6667773          345666666665446677999999999988743     258877665


Q ss_pred             cchhcCcccccc
Q 020428          233 RGALWNASIFSS  244 (326)
Q Consensus       233 r~~l~~P~lf~~  244 (326)
                      -|....+..|.+
T Consensus        87 AG~~~~~~~~~~   98 (250)
T d1ydea1          87 AGHHPPPQRPEE   98 (250)
T ss_dssp             CCCCCCCCCGGG
T ss_pred             cccccccccccc
Confidence            554444444444

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=2.7  Score=34.55  Aligned_cols=132  Identities=19%  Similarity=0.227  Sum_probs=81.2

Q ss_pred             ccccccccccCChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHH
Q 020428          116 VSGGMGAALLSKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIA  195 (326)
Q Consensus       116 ~~~~~G~~l~~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~  195 (326)
                      .+.+.|-.+..+.+.+..+++.+++. ++.||+=+-  ++    .+-++.+.+.|+|.|-+|-..-...+.....-..+.
T Consensus       100 lTTegGld~~~~~~~L~~~i~~l~~~-girvSLFiD--pd----~~~i~~a~~lGad~IElhTG~Ya~a~~~~~~~~el~  172 (242)
T d1m5wa_         100 VTTEGGLDVAGQRDKMRDACKRLADA-GIQVSLFID--AD----EEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELA  172 (242)
T ss_dssp             SSCCSCCCSGGGHHHHHHHHHHHHHT-TCEEEEEEC--SC----HHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHH
T ss_pred             cCcCCceeehhhHHHHHHHHHHHHhc-CCeEEEEec--cc----hhhHHHHhhcCcceeeeecccccccccchhhHHHHH
Confidence            34566777888889999999999876 777777663  22    244667788999999998553322221111111222


Q ss_pred             HH------HHhcCCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccccCCCCHHHHHHHHHHHH
Q 020428          196 DI------VAALSIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSSQGKLHWEDVKREYVRKS  261 (326)
Q Consensus       196 ~i------~~~~~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~~~~~~~~~~~~~~~~~~  261 (326)
                      ++      +...++-|=+.=|+. .+.+..+.+-.+.+=|-||-+++.+--+ ..     .++.+++|.+..
T Consensus       173 ~i~~aa~~A~~lGL~VnAGHgLn-~~Nl~~i~~ip~i~EvsIGHaiI~eal~-~G-----l~~aV~~~~~ii  237 (242)
T d1m5wa_         173 RIAKAATFAASLGLKVNAGHGLT-YHNVKAIAAIPEMHELNIGHAIIGRAVM-TG-----LKDAVAEMKRLM  237 (242)
T ss_dssp             HHHHHHHHHHHTTCEEEEESSCC-TTTHHHHHTCTTEEEEEECHHHHHHHHH-HC-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccCCCCcC-ccchHHHhcCCCCeEEeccHHHHHHHHH-Hh-----HHHHHHHHHHHH
Confidence            22      333577776666664 4555555544568899999887776533 32     344455555443

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=81.80  E-value=0.44  Score=39.85  Aligned_cols=40  Identities=10%  Similarity=0.208  Sum_probs=33.5

Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcccccc
Q 020428          202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNASIFSS  244 (326)
Q Consensus       202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~lf~~  244 (326)
                      ++||++.|.|. ++.+.++++..++||+.||++.|. |. |.+
T Consensus       204 ~i~ilYGGSV~-~~N~~~i~~~~~vdG~LVG~ASl~-~~-F~~  243 (249)
T d1n55a_         204 KLRILYGGSVN-AANAATLYAKPDINGFLVGGASLK-PE-FRD  243 (249)
T ss_dssp             HCEEEEESSCC-TTTHHHHHTSTTCCEEEESGGGGS-TT-HHH
T ss_pred             cccEEEcCCCC-HhHHHHHhcCCCCCeEEeehhhcC-HH-HHH
Confidence            48999999986 677888887889999999999995 76 543

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.68  E-value=0.54  Score=39.23  Aligned_cols=37  Identities=14%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhcCCcEEEeccchhcCcc
Q 020428          202 SIPVIANGDVFEYDDFQRIKTAAGASSVMAARGALWNAS  240 (326)
Q Consensus       202 ~iPVi~nGgI~s~~d~~~~l~~~Gad~VmiGr~~l~~P~  240 (326)
                      ++||++.|.|. ++.+.++++..++||+.||++.|. +.
T Consensus       201 ~i~ilYGGSV~-~~N~~~i~~~~~idG~LVG~ASL~-~~  237 (246)
T d1o5xa_         201 QIRILYGGSVN-TENCSSLIQQEDIDGFLVGNASLK-ES  237 (246)
T ss_dssp             HSEEEECSCCC-TTTHHHHHTSTTCCEEEECGGGGS-TT
T ss_pred             cccEEEeCCCC-HhHHHHHhcCCCCCEEEeecccCC-HH
Confidence            58999999986 677888887889999999999995 55

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=81.65  E-value=2.8  Score=34.66  Aligned_cols=65  Identities=14%  Similarity=0.113  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHhcCCcEEEe
Q 020428          160 VELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAAL---SIPVIANGDVFEYDDFQRIKTAAGASSVMA  231 (326)
Q Consensus       160 ~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~iPVi~nGgI~s~~d~~~~l~~~Gad~Vmi  231 (326)
                      ..+++.+..+|.|++.+..-      .++.+++.+..+....   +++.++==--.++..+.++| ..||+||++
T Consensus        27 p~~~ei~a~~G~Dfv~iD~E------Hg~~~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~L-D~Ga~GIiv   94 (253)
T d1dxea_          27 PISTEVLGLAGFDWLVLDGE------HAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLL-DIGFYNFLI   94 (253)
T ss_dssp             HHHHHHHTTSCCSEEEEESS------SSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHH-HTTCCEEEE
T ss_pred             HHHHHHHHcCCCCEEEEecc------cCCCChhHHHHHHHHHhccCCCceecCCCCCHHHHHHHH-hcCccEEEe
Confidence            35677788899999988532      3456666665555443   34333222235677777777 477877776

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=81.57  E-value=7  Score=27.70  Aligned_cols=92  Identities=10%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             CChHHHHHHHHHHhhcccCcEEEEecCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHHh-cCCc
Q 020428          126 SKPELIHDILTMLKRNLDVPVTCKIRLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVAA-LSIP  204 (326)
Q Consensus       126 ~~p~~~~~iv~~v~~~~~~pv~vK~r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~iP  204 (326)
                      .|-..+.+.++.+-+..+.-+..-..      +..+..+.+.+...|.+.+.-.-..     ..-++.++++++. .++|
T Consensus         8 DD~~~~~~~l~~~L~~~g~~v~~~a~------~~~~al~~~~~~~~dliilD~~mp~-----~~G~e~~~~ir~~~~~~p   76 (118)
T d1u0sy_           8 DDAAFMRMMLKDIITKAGYEVAGEAT------NGREAVEKYKELKPDIVTMDITMPE-----MNGIDAIKEIMKIDPNAK   76 (118)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEEEES------SHHHHHHHHHHHCCSEEEEECSCGG-----GCHHHHHHHHHHHCTTCC
T ss_pred             eCCHHHHHHHHHHHHHcCCceEEEEC------CHHHHHHHHHhccCCEEEEecCCCC-----CCHHHHHHHHHHhCCCCc
Confidence            34456666666665555655432222      3344455666777898887644322     2247888888764 4799


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCcEE
Q 020428          205 VIANGDVFEYDDFQRIKTAAGASSV  229 (326)
Q Consensus       205 Vi~nGgI~s~~d~~~~l~~~Gad~V  229 (326)
                      |+.--+-.+.+...+++ +.||++.
T Consensus        77 vi~ls~~~~~~~~~~a~-~~Ga~~y  100 (118)
T d1u0sy_          77 IIVCSAMGQQAMVIEAI-KAGAKDF  100 (118)
T ss_dssp             EEEEECTTCHHHHHHHH-HTTCCEE
T ss_pred             EEEEEccCCHHHHHHHH-HcCCCEE
Confidence            99888889999999999 6899875

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=80.38  E-value=8.6  Score=31.59  Aligned_cols=107  Identities=13%  Similarity=0.038  Sum_probs=66.5

Q ss_pred             cEEEEE---CCCCHHHHHHHHHHhhc-CCCEEEEccCCCccccccccccccccCChHHHHHHHHHHhhccc--CcEEEEe
Q 020428           77 HVVFQM---GTSDAVRALTAAKMVCK-DVAAIDINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLD--VPVTCKI  150 (326)
Q Consensus        77 p~~vQl---~g~~~~~~~~aa~~~~~-~~d~idlN~gcP~~~~~~~~~G~~l~~~p~~~~~iv~~v~~~~~--~pv~vK~  150 (326)
                      .+.+++   ...+++.+.+.++.+.+ |++.|-|-          +-.|+.   .|+.+.++++.+++.+.  +++.+=+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~----------DT~G~~---~P~~v~~~v~~l~~~~~~~~~i~~H~  200 (289)
T d1nvma2         134 DTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA----------DSGGAM---SMNDIRDRMRAFKAVLKPETQVGMHA  200 (289)
T ss_dssp             EEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE----------CTTCCC---CHHHHHHHHHHHHHHSCTTSEEEEEC
T ss_pred             ceeeEeeeccccCchhhhHHHHhhccccceeeeec----------chhhcc---cchhHHHHHHHHHHHhcccccceeee
Confidence            345555   24567888888888877 88887772          345543   69999999999998763  4444443


Q ss_pred             cCCCChHHHHHHHHHHHHcCCcEEEEeecccCCCCCCcCCHHHHHHHHH
Q 020428          151 RLLKSSQDTVELARRIEKTGVSALAVHGRKVADRPRDPAKWGEIADIVA  199 (326)
Q Consensus       151 r~g~~~~~~~e~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~  199 (326)
                        ..+...+..-+...-++|++.|..+----.+ ..|.++.+.+-...+
T Consensus       201 --Hn~~g~a~an~l~A~~~G~~~id~si~GlG~-~~GN~~tE~lv~~l~  246 (289)
T d1nvma2         201 --HHNLSLGVANSIVAVEEGCDRVDASLAGMGA-GAGNAPLEVFIAVAE  246 (289)
T ss_dssp             --BCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-TTCBCBHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHHHhCCcEeeccccccCC-CCCCccHHHHHHHHH
Confidence              3444445555556678999998754221111 234555665433333