Citrus Sinensis ID: 020430

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHcHccccHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mspgetvsrslldkplhqlteddisqVTREDCRRYLKekgmrrpswnksQAIQQVICLKTLLETTTDTEATEARRKlysvpshsavtvketcepapcrrqdapmpdfsgdsssrlaadsesisprtTVAAKEAVGQMTIFYsgkvnvyddmpSEKAQAILQLAasplplsqkapsdgttglqsvpchlqtaginvgpsspvifptlqTVKVVEncqlpweesnishedsfdgptsrKASVQRYREKRKDRFknkrkiampssssldvylnrwvgdqfaneqlnpsdvcstlqsrpsqtspgcgvvenlanvsnlpvdpndkdvten
Flexible Loop (DISEMBL)
mspgetvsrslldkplhqlteddisqvtreDCRRYLkekgmrrpswnksqaIQQVICLKTLLETTTDTEATEARRklysvpshsavtvketcepapcrrqdapMPDFSGDSSSrlaadsesisprttvaakeavgQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWeesnishedsfdgptsrkasvqryrekrkdrfknkrkiampssssldvYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVenlanvsnlpvdpndkdvten
Low Complexity Region (SEG)
MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKtlletttdteateaRRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN
Disordered region (IsUnstruct)
***********************************************KSQAIQQVICLKTLLETTT*****************************************************************EAVGQMTIFYSGKVNVYDD*********************************VPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWE********************************************LDVYLNRWVGDQFA************************************************
Disordered Region (DISOPRED)
***********LDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLK******************************************************************************TIFYSGKVNVYDDMPSEKAQAILQL********************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********SLLDKPLHQLTEDDISQVTREDCRRYLKE**********SQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQDAPMP********************TTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLS**********LQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNI****************************NKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPS***************GCGVVENLANVSNLPVDP********
Disordered Region (DISPRO)
*********SLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKTLLE*********************************************************************AVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASP**************************************************************SFDGPTSRKASVQRYREKRKDRFKNKRKIA*PSSSSLDVY**********************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q8GY55	315	Protein TIFY 4B OS=Arabid	yes	no	0.763	0.790	0.428	1e-50
Q7XA73	313	Protein TIFY 4A OS=Arabid	no	no	0.763	0.795	0.419	1e-49
Q9C5K8	187	Protein TIFY 3B OS=Arabid	no	no	0.315	0.550	0.333	3e-07
Q9M246	238	Protein TIFY 3A OS=Arabid	no	no	0.260	0.357	0.301	3e-05
Q9LVI4	352	Protein TIFY 6B OS=Arabid	no	no	0.392	0.363	0.298	0.0001
Q58G47	310	Protein TIFY 6A OS=Arabid	no	no	0.374	0.393	0.290	0.0002

>sp|Q8GY55|TIF4B_ARATH Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 167/294 (56%), Gaps = 45/294 (15%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M  G T ++S+L+KPL  LTE+DISQ+TREDCR++LKEKGMRRPSWNKSQAIQQV+ LK 
Sbjct: 1   MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLETTTDTEATEARRKLYSVPSHSAVTVKETCEP----------------APCRRQDAPM 104
           L E   D+ A   R+ L S P +         EP                  C R+D+P 
Sbjct: 61  LYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPR 120

Query: 105 -PDFSGDSSSRLAADSE-----SISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQA 158
             +FSG SS +  AD +     S+SPR+       VGQMTIFYSGKVNVYD +P EKA++
Sbjct: 121 SAEFSG-SSGQFVADKDSHKTVSVSPRSPAETNAVVGQMTIFYSGKVNVYDGVPPEKARS 179

Query: 159 ILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLP 218
           I+  AA+P+ L    P +G                 +  SS +I   +   K+VE  Q  
Sbjct: 180 IMHFAANPIDL----PENG-----------------IFASSRMISKPMSKEKMVELPQYG 218

Query: 219 WEESNISHEDSFDGPTSRKASVQRYREKRKD-RFKNKRKIAMPSSSSLDVYLNR 271
            E++  S +   +G  +RK S+QRY EKRKD RF   +K    +SSSL+++LNR
Sbjct: 219 LEKAPASRDSDVEGQANRKVSLQRYLEKRKDRRFSKTKKAPGVASSSLEMFLNR 272

Regulates the arrest of dispersed meristematic cells during lamina development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA73|TIF4A_ARATH Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A PE=1 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 164/291 (56%), Gaps = 42/291 (14%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M  G + ++S+L KPL  LTE+DISQ+TREDCR++LK+KGMRRPSWNKSQAIQQV+ LK 
Sbjct: 1   MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLETTTDTEATEARRKLYSVPSHSAVTVKETCEP----------------APCRRQDAPM 104
           L E   D+ A   R+ L S P +         EP                  C R D+P 
Sbjct: 61  LYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEACGRVSYPEDNGACHRMDSPR 120

Query: 105 -PDFSGDSSSRLA---ADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAIL 160
             +FSG S   ++       +ISPR+     E VGQMTIFYSGKVNVYD +P EKA++I+
Sbjct: 121 SAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIM 180

Query: 161 QLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWE 220
             AA+P+ L    P +G                 +  SS +I   +   K++E  Q   E
Sbjct: 181 HFAANPIDL----PENG-----------------IFASSRMISKLISKEKMMELPQKGLE 219

Query: 221 ESNISHEDSFDGPTSRKASVQRYREKRKDR-FKNKRKIAMPSSSSLDVYLN 270
           ++N S +   +G  +RK S+QRYREKRKDR F   +K    +SSSL+++LN
Sbjct: 220 KANSSRDSGMEGQANRKVSLQRYREKRKDRKFSKAKKCPGVASSSLEMFLN 270

Regulates the arrest of dispersed meristematic cells during lamina development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5K8|TIF3B_ARATH Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 17/120 (14%)

Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
           Q+TIF+ G V V+D +PSEK Q IL++AA  +       +  +T +  V     +  +N 
Sbjct: 57  QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAM------ETKNSTSISPV----SSPALNR 106

Query: 196 GPSSPVIFPTLQTVKVVENCQLPWEESNISH-EDSFDGPTSRKASVQRYREKRKDRFKNK 254
            PS         T  V      P+    IS    + D P +R+ S+QR+ EKR+DR  NK
Sbjct: 107 APS------FSSTSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNK 160

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M246|TIF3A_ARATH Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 31/116 (26%)

Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
           Q+TI + G  +V+D +P+EK Q IL +AA+       A +  T  L S+   L+ A    
Sbjct: 131 QLTIIFGGSFSVFDGIPAEKVQEILHIAAA-------AKATETINLTSINPALKRA---- 179

Query: 196 GPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRF 251
                + F    TV  V                  D P +R+ S+QR+ EKR+ RF
Sbjct: 180 -----ISFSNASTVACVSTA---------------DVPIARRRSLQRFFEKRRHRF 215

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVI4|TIF6B_ARATH Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 65/161 (40%), Gaps = 33/161 (20%)

Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
           Q+TIFY+G V VYDD+  EKA+AI+ LA +   + Q   S   T  Q V  H   A ++ 
Sbjct: 178 QLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQVF-SPPQTHQQVV--HHTRASVDS 234

Query: 196 GPSSPVIFPT--------------LQTVKVVE----------------NCQLPWEESNIS 225
               P   PT              L   K                   NC +P   S   
Sbjct: 235 SAMPPSFMPTISYLSPEAGSSTNGLGATKATRGLTSTYHNNQANGSNINCPVPVSCSTNV 294

Query: 226 HEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 266
              +   P +RKAS+ R+ EKRK+R  +     +   SS D
Sbjct: 295 MAPTVALPLARKASLARFLEKRKERVTSVSPYCLDKKSSTD 335

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. Acts as a negative regulator of MYC2 function. Feed-back regulated by MYC2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58G47|TIF6A_ARATH Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 33/155 (21%)

Query: 136 QMTIFYSGKVNVYDDMPSEKAQAILQLAAS---PLPLSQKAP-----------------S 175
           Q+TIFY+G V VY D+  EKAQAI+ LA +     P+SQ  P                  
Sbjct: 147 QLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHAKPVSQPKPQKLVHHSLPTTDPPTMPP 206

Query: 176 DGTTGLQSVPCHLQTAGIN----VGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFD 231
                +  +    +++G N    +GP+      T  ++    N Q     +  S   +  
Sbjct: 207 SFLPSISYIVSETRSSGSNGVTGLGPTK-----TKASLASTRNNQ----TAAFSMAPTVG 257

Query: 232 GPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 266
            P +RKAS+ R+ EKRK+R  N     + + SS+D
Sbjct: 258 LPQTRKASLARFLEKRKERVINVSPYYVDNKSSID 292

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
296084479	341	unnamed protein product [Vitis vinifera]	1.0	0.956	0.598	1e-100
224082684	375	predicted protein [Populus trichocarpa]	0.975	0.848	0.552	3e-89
225437146	252	PREDICTED: protein TIFY 4B-like [Vitis v	0.711	0.920	0.622	1e-71
297737106	325	unnamed protein product [Vitis vinifera]	0.929	0.932	0.448	1e-58
255559839	270	conserved hypothetical protein [Ricinus	0.779	0.940	0.447	2e-58
359477363	393	PREDICTED: protein TIFY 4B-like [Vitis v	0.990	0.821	0.414	2e-57
255552057	335	conserved hypothetical protein [Ricinus	0.846	0.823	0.469	2e-56
389986115	244	jasmonate ZIM domain protein k.1 [Nicoti	0.705	0.942	0.511	8e-54
449455306	336	PREDICTED: protein TIFY 4B-like [Cucumis	0.975	0.946	0.429	2e-53
30682967	315	protein TIFY 4B [Arabidopsis thaliana] g	0.763	0.790	0.428	7e-49

>gi|296084479|emb|CBI25038.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/341 (59%), Positives = 237/341 (69%), Gaps = 15/341 (4%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           MSP     RSLLDKPLHQLTEDDISQ+TREDCR+YLKEKGMRRPSWNKSQAIQQVI LKT
Sbjct: 1   MSPENANIRSLLDKPLHQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKT 60

Query: 61  LLETTTDT---EATEARRKLYSVPSHSAVTVKETC------EPAPCRRQDAPMPDFSGDS 111
           LLETT+D    +A  AR+KL+  P  +   V  T       E  P +RQD P PD SGD+
Sbjct: 61  LLETTSDCGGGDAAGARKKLFVPPPENQHRVPLTRISVSDEESVPYQRQDPPKPDISGDT 120

Query: 112 SSRL--AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPL 169
            + L  AADS+SI PRT  A     GQMTIFY GKVNVYDD+  +KA+AI+QLAAS L L
Sbjct: 121 EAHLLAAADSDSIPPRTLDAMNGPAGQMTIFYCGKVNVYDDVSMDKAKAIMQLAASSLHL 180

Query: 170 SQKAPSDGTTGLQSVPCHLQTAGINVGPSSP-VIFPTLQTVKVVENCQLPWEESNISHED 228
            Q+AP DGT  L    CHL+ A + +GPSSP VI+PTLQTVK+ ENCQL  EESNI  ED
Sbjct: 181 HQEAPCDGTPELLPFSCHLRAASVKIGPSSPTVIYPTLQTVKMTENCQLHREESNIFRED 240

Query: 229 SF---DGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPS 285
           +    + PTSRKASVQRY EKRKDRFK+K++  MPSS+ LD+YLN  VGDQ  N+Q N S
Sbjct: 241 NHPAAEVPTSRKASVQRYLEKRKDRFKSKKRGGMPSSAGLDIYLNHRVGDQIPNDQSNQS 300

Query: 286 DVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN 326
           D CS    R       C +VEN+   +NL  D N KDV E+
Sbjct: 301 DACSLSHCRAHHIPTPCSLVENMTKHTNLSADLNIKDVQEH 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082684|ref|XP_002306794.1| predicted protein [Populus trichocarpa] gi|222856243|gb|EEE93790.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/353 (55%), Positives = 235/353 (66%), Gaps = 35/353 (9%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M PGETV RS LDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVI LKT
Sbjct: 1   MQPGETVFRSALDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVISLKT 60

Query: 61  LLETTTDTEATEARRKLY------------------SVPSHSAVTVKETC---------- 92
           LLE T +TE+   RR+LY                  +VP +S+V+ +             
Sbjct: 61  LLEATPETES--PRRRLYIPRPPPHPPDNTPRVRFSAVPPNSSVSERGASAETPISVPAE 118

Query: 93  EPAPCRRQDAPMPDFSGDSSSRLAA---DSESISPRTTVAAKEAVGQMTIFYSGKVNVYD 149
           EP PCR+ D P PD   D    + A   ++ S+SPRTT  A+E+ GQMTIFY GKVNVYD
Sbjct: 119 EPVPCRQHDPPNPDDPADPLPPVHAAVTENASVSPRTTGMAEESAGQMTIFYCGKVNVYD 178

Query: 150 DMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVI-FPTLQT 208
           D+P +KAQAI+ LAASP    Q A SD    L+ + C L T G+   P+S V  FPTL T
Sbjct: 179 DVPGDKAQAIMHLAASPFAPPQDASSDVIPTLRPLQCQLDTPGVKAAPNSIVANFPTLPT 238

Query: 209 VKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVY 268
           VK  ++ QL WEESNI+ ED+ +G TSRKAS+QRY EK+KDRFKNKRK+A+P S+SLDV+
Sbjct: 239 VKGADSGQLLWEESNIAREDNLEGSTSRKASLQRYFEKKKDRFKNKRKVAVP-SASLDVF 297

Query: 269 LNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDK 321
           L+  VGDQ +N+  N +D CS  Q RP QT   C  V+N+A    L  D N+K
Sbjct: 298 LSHLVGDQISNDHWNLNDACSPSQPRPPQTPNRCNSVDNVAKNGILKADLNNK 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437146|ref|XP_002274568.1| PREDICTED: protein TIFY 4B-like [Vitis vinifera]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/244 (62%), Positives = 174/244 (71%), Gaps = 12/244 (4%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           MSP     RSLLDKPLHQLTEDDISQ+TREDCR+YLKEKGMRRPSWNKSQAIQQVI LKT
Sbjct: 1   MSPENANIRSLLDKPLHQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKT 60

Query: 61  LLETTTDT---EATEARRKLYSVPSHSAVTVKETC------EPAPCRRQDAPMPDFSGDS 111
           LLETT+D    +A  AR+KL+  P  +   V  T       E  P +RQD P PD SGD+
Sbjct: 61  LLETTSDCGGGDAAGARKKLFVPPPENQHRVPLTRISVSDEESVPYQRQDPPKPDISGDT 120

Query: 112 SSRL--AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPL 169
            + L  AADS+SI PRT  A     GQMTIFY GKVNVYDD+  +KA+AI+QLAAS L L
Sbjct: 121 EAHLLAAADSDSIPPRTLDAMNGPAGQMTIFYCGKVNVYDDVSMDKAKAIMQLAASSLHL 180

Query: 170 SQKAPSDGTTGLQSVPCHLQTAGINVGPSSP-VIFPTLQTVKVVENCQLPWEESNISHED 228
            Q+AP DGT  L    CHL+ A + +GPSSP VI+PTLQTVK+ ENCQL  EESNI  ED
Sbjct: 181 HQEAPCDGTPELLPFSCHLRAASVKIGPSSPTVIYPTLQTVKMTENCQLHREESNIFRED 240

Query: 229 SFDG 232
           +  G
Sbjct: 241 NHPG 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737106|emb|CBI26307.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 156/348 (44%), Positives = 195/348 (56%), Gaps = 45/348 (12%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M+PG T  RS+LDKPLH+LTE+DISQ+TREDCR+YLKEKGMRRPSWNKSQAIQQVI LK+
Sbjct: 1   MNPGVTTLRSILDKPLHELTEEDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKS 60

Query: 61  LLETTTDTEATEARR--------KLYSVPSHSAVTVKETC----------EPAPCRRQD- 101
           LLET+  + A   R+         L  V S+SA + KE            E  P   +D 
Sbjct: 61  LLETSEGSGAGVLRKITDSPPAENLPPVTSNSADSGKELSADIQISVSADELVPLPPKDH 120

Query: 102 APMPDFSGDSSSR-LAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAIL 160
            P    SG+ +SR   AD++   PR+  A    VGQMTIFY GKVNVYD +P +KAQAI+
Sbjct: 121 HPESTPSGELASRPPEADTKHTCPRSPGATNCLVGQMTIFYCGKVNVYDGVPDDKAQAIM 180

Query: 161 QLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVG--PSSPVIFPTLQTVKVVENCQLP 218
            LAASP  L    P  G   L S PCHL TA +  G  P   ++  T+QT          
Sbjct: 181 HLAASPFHLPSDDPFSGAAMLCSSPCHLHTANVKHGHIPPRAMVSQTMQT---------- 230

Query: 219 WEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFA 278
                       +G   RK S+QRY EKRKDRFK+++KI +P S SL++Y+N     Q +
Sbjct: 231 ----------DVEGQVDRKLSLQRYFEKRKDRFKSRKKIGLP-SGSLEMYVNHQARTQPS 279

Query: 279 NEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN 326
           N Q + S   S  Q   S T   C   +N        VD N KD+ E+
Sbjct: 280 NGQSSRSGTSSPPQHGLSHTL--CSSADNHTKNFTPFVDLNSKDIQES 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559839|ref|XP_002520938.1| conserved hypothetical protein [Ricinus communis] gi|223539775|gb|EEF41355.1| conserved hypothetical protein [Ricinus communis]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/326 (44%), Positives = 177/326 (54%), Gaps = 72/326 (22%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M  G+ +SRS LDKPLHQLTEDDI+Q+TREDCRRYLK+KGMRRPSWNKSQAIQQVI LK 
Sbjct: 8   MQTGDIISRSNLDKPLHQLTEDDIAQLTREDCRRYLKDKGMRRPSWNKSQAIQQVISLKA 67

Query: 61  LLETTTDTEATEARRKL----YSVPSHSAVTVKETCEPAPCRRQDAPMP-DFSGDSSSRL 115
           LLET  D+     RR      ++VP H  +T  +  + A    Q A  P   SGD+SS  
Sbjct: 68  LLETAPDSNEVPKRRLYIPHPHNVPLHHRIT--DWSDHAQAIMQLAACPLSLSGDTSS-- 123

Query: 116 AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPS 175
                                            D +P          A  P+P   +AP 
Sbjct: 124 ---------------------------------DAIP----------ALRPIPSQLEAP- 139

Query: 176 DGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTS 235
                           G+    S   ++PT QT KV E+C LP EESN+ HED+ +G TS
Sbjct: 140 ----------------GVKTSLSPMFVYPTQQTGKVAEHCHLPKEESNLFHEDNLEGRTS 183

Query: 236 RKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRP 295
           RKASVQRY EKRKDRFKNKRK+AMPSS   D++LN  V D+F+N+Q N ++ C   Q RP
Sbjct: 184 RKASVQRYLEKRKDRFKNKRKVAMPSS---DIHLNHCVRDEFSNDQWNLTEACFATQPRP 240

Query: 296 SQTSPGCGVVENLANVSNLPVDPNDK 321
           SQT   C  V      +NL  D N K
Sbjct: 241 SQTPIQCSTVAYTEKHTNLSADLNGK 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477363|ref|XP_002279320.2| PREDICTED: protein TIFY 4B-like [Vitis vinifera]

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 164/396 (41%), Positives = 204/396 (51%), Gaps = 73/396 (18%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M+PG T  RS+LDKPLH+LTE+DISQ+TREDCR+YLKEKGMRRPSWNKSQAIQQVI LK+
Sbjct: 1   MNPGVTTLRSILDKPLHELTEEDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKS 60

Query: 61  LLETTTDTEATEARR--------KLYSVPSHSAVTVKETC----------EPAPCRRQD- 101
           LLET+  + A   R+         L  V S+SA + KE            E  P   +D 
Sbjct: 61  LLETSEGSGAGVLRKITDSPPAENLPPVTSNSADSGKELSADIQISVSADELVPLPPKDH 120

Query: 102 APMPDFSGDSSSR-LAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAIL 160
            P    SG+ +SR   AD++   PR+  A    VGQMTIFY GKVNVYD +P +KAQAI+
Sbjct: 121 HPESTPSGELASRPPEADTKHTCPRSPGATNCLVGQMTIFYCGKVNVYDGVPDDKAQAIM 180

Query: 161 QLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVG--PSSPVIFPTLQTVKVVENCQLP 218
            LAASP  L    P  G   L S PCHL TA +  G  P   ++  T+QT K  E  Q  
Sbjct: 181 HLAASPFHLPSDDPFSGAAMLCSSPCHLHTANVKHGHIPPRAMVSQTMQTEKFTEYSQQY 240

Query: 219 WEESNIS----------------------------------------------HEDSFD- 231
            EE N +                                              +E   D 
Sbjct: 241 REEVNFTRGHGSEALSGLRTVGSPTARPTEDMEQTTCLTIWGTFRYKVMPFEIYEGIMDV 300

Query: 232 -GPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCST 290
            G   RK S+QRY EKRKDRFK+++KI +P S SL++Y+N     Q +N Q + S   S 
Sbjct: 301 EGQVDRKLSLQRYFEKRKDRFKSRKKIGLP-SGSLEMYVNHQARTQPSNGQSSRSGTSSP 359

Query: 291 LQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN 326
            Q   S T   C   +N        VD N KD+ E+
Sbjct: 360 PQHGLSHTL--CSSADNHTKNFTPFVDLNSKDIQES 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552057|ref|XP_002517073.1| conserved hypothetical protein [Ricinus communis] gi|223543708|gb|EEF45236.1| conserved hypothetical protein [Ricinus communis]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/298 (46%), Positives = 179/298 (60%), Gaps = 22/298 (7%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M  G T  RS+LDKPL QLTE+DISQ+TREDCR+YLKEKGMRRPSWNKSQAIQQVI LK 
Sbjct: 1   MDAGVTSFRSILDKPLTQLTEEDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQD-----APMPDFSGDSSSRL 115
           LLET+ D+ A   RR L S P  ++ +V    EP+     +     AP         +  
Sbjct: 61  LLETSEDSGAGALRRILVSKPPVTSNSVDSAKEPSDSNNNNLLDETAPHDSPKSPPPAPS 120

Query: 116 ------AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPL 169
                  AD++ IS R+  A    VGQMTIFY GKVNVYD +P +KAQAI+ LAA+P+  
Sbjct: 121 LDCPLEEADNKVISSRSPGATDGLVGQMTIFYCGKVNVYDGVPPDKAQAIMHLAATPI-- 178

Query: 170 SQKAPSDGTTG--LQSVPCHLQTAGIN--VGPSSPVIFPTLQTVKVVENCQLPWEESNIS 225
              +P D      + + P HLQT        PS+  I PT  T KV E  Q   E+ N++
Sbjct: 179 --HSPLDDPIRRPVFAFPYHLQTPSDKHVFVPSNAAISPTTPTEKVTEYSQQCREKGNVT 236

Query: 226 HEDSFDGPTSRKASVQRYREKRKD--RFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQ 281
           ++   +G  +RK S+QRY EK+KD  RFK ++ +  P+SSSLD YLN  +    +NEQ
Sbjct: 237 YDHDVEGQANRKMSLQRYLEKKKDRGRFKGRKNLG-PNSSSLDAYLNHQMRTHISNEQ 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|389986115|gb|AFL46175.1| jasmonate ZIM domain protein k.1 [Nicotiana attenuata]

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 135/264 (51%), Positives = 165/264 (62%), Gaps = 34/264 (12%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M P E+VS+SLLDKPL QLTEDDISQ+TREDCRRYLK KGMRRPSWNKSQAIQQVI LK 
Sbjct: 1   MPPEESVSKSLLDKPLQQLTEDDISQLTREDCRRYLKLKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLETTTDTEATEARRKLYSVPSHSAV--------TVKETCEPA----PCRRQDAPMPDFS 108
           LLETT D++A   R+KLY   S + +        T +E  E A    P  R      D S
Sbjct: 61  LLETTPDSDAG-TRKKLYIPRSDTKLHHVQRGKNTDEEFIELAEETVPDGRTLQDKADLS 119

Query: 109 GDSSSRLAADSESISP-RTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPL 167
           GD++  L A  +  +P RT  +   + GQMTIFYSGKVNVYDD+P++KAQ I+++A+S L
Sbjct: 120 GDATPNLVAAIDKSAPSRTIGSVDTSAGQMTIFYSGKVNVYDDVPADKAQTIMRVASSSL 179

Query: 168 PLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSP-VIFPTLQTVKVVENCQLPWEESNISH 226
            +  + P + T   Q   C LQ A   + P S  V+ PT+QT + VEN            
Sbjct: 180 CVPSETPLNATVAAQHSTCCLQVANTKLRPDSDMVLLPTIQT-EAVEN------------ 226

Query: 227 EDSFDGPTSRKASVQRYREKRKDR 250
                 P+SRKASVQRY EKRKDR
Sbjct: 227 ------PSSRKASVQRYLEKRKDR 244

Source: Nicotiana attenuata

Species: Nicotiana attenuata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455306|ref|XP_004145394.1| PREDICTED: protein TIFY 4B-like [Cucumis sativus] gi|449494857|ref|XP_004159666.1| PREDICTED: protein TIFY 4B-like [Cucumis sativus]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 187/342 (54%), Gaps = 24/342 (7%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           MS G    RS+LDKPL+QLTEDDISQ+TREDCR+YLKEKGMRRPSWNKSQAIQQVI LK 
Sbjct: 1   MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLETTTDTEATEARRKLYS--VPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAA- 117
           LLE   D+ A   R+ + S  + S+   + KE  + A    Q     D S  S+   A  
Sbjct: 61  LLEPCDDSGAGALRKVVVSPRINSNQGDSPKEPSDDA----QVTMSVDESAYSNVETAKS 116

Query: 118 ---------DSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLP 168
                    ++   SPR         GQMTIFY GKVNVYD +P +KA AI+ LAASP+ 
Sbjct: 117 TPEDPPVEPENNVTSPRDQYDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIH 176

Query: 169 LSQKAPSDGTTGLQSVPCHLQTAG--INVGPSSPVIFPTLQTVKVVENCQLPWEESNISH 226
             Q  P  GT   QS PC LQT+    +  P S  I+  + T K+ E+ Q        S 
Sbjct: 177 FPQNHPMSGTAACQSPPCLLQTSSDRDDFLPPSATIYRNVHTEKLGEHPQQQQHAKGTSM 236

Query: 227 EDS-FDGPTSRKASVQRYREKRKD--RFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLN 283
            DS  +G  SRK S+QRY EKRKD  R KNK+   + SS SL+ Y+N  +    +N+ L 
Sbjct: 237 RDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGL-SSPSLEGYMNHQMRTHISNKNL- 294

Query: 284 PSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTE 325
              + ++  S         G  +N   ++   VD N KD+ E
Sbjct: 295 -GQIVTSSLSPTGVAKAFVGPADNQPKLACFSVDLNVKDIQE 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682967|ref|NP_193208.2| protein TIFY 4B [Arabidopsis thaliana] gi|75151364|sp|Q8GY55.1|TIF4B_ARATH RecName: Full=Protein TIFY 4B; AltName: Full=Protein PEAPOD 2 gi|26450773|dbj|BAC42495.1| unknown protein [Arabidopsis thaliana] gi|332658087|gb|AEE83487.1| protein TIFY 4B [Arabidopsis thaliana]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 167/294 (56%), Gaps = 45/294 (15%)

Query: 1   MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKT 60
           M  G T ++S+L+KPL  LTE+DISQ+TREDCR++LKEKGMRRPSWNKSQAIQQV+ LK 
Sbjct: 1   MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLETTTDTEATEARRKLYSVPSHSAVTVKETCEP----------------APCRRQDAPM 104
           L E   D+ A   R+ L S P +         EP                  C R+D+P 
Sbjct: 61  LYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPR 120

Query: 105 -PDFSGDSSSRLAADSE-----SISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQA 158
             +FSG SS +  AD +     S+SPR+       VGQMTIFYSGKVNVYD +P EKA++
Sbjct: 121 SAEFSG-SSGQFVADKDSHKTVSVSPRSPAETNAVVGQMTIFYSGKVNVYDGVPPEKARS 179

Query: 159 ILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLP 218
           I+  AA+P+ L    P +G                 +  SS +I   +   K+VE  Q  
Sbjct: 180 IMHFAANPIDL----PENG-----------------IFASSRMISKPMSKEKMVELPQYG 218

Query: 219 WEESNISHEDSFDGPTSRKASVQRYREKRKD-RFKNKRKIAMPSSSSLDVYLNR 271
            E++  S +   +G  +RK S+QRY EKRKD RF   +K    +SSSL+++LNR
Sbjct: 219 LEKAPASRDSDVEGQANRKVSLQRYLEKRKDRRFSKTKKAPGVASSSLEMFLNR 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2130155	315	PPD2 [Arabidopsis thaliana (ta	0.874	0.904	0.359	8.8e-31
TAIR|locus:505006464	313	PPD1 "PEAPOD 1" [Arabidopsis t	0.904	0.942	0.339	1.3e-29
TAIR|locus:2147142	187	JAZ12 "jasmonate-zim-domain pr	0.355	0.620	0.323	2.2e-08
TAIR|locus:2027267	249	TIFY10B [Arabidopsis thaliana	0.444	0.582	0.303	4.5e-06
TAIR|locus:2088530	352	JAZ3 "jasmonate-zim-domain pro	0.208	0.193	0.394	1e-05
TAIR|locus:2202180	253	JAZ1 "jasmonate-zim-domain pro	0.184	0.237	0.360	3.8e-05
TAIR|locus:2198018	310	JAZ4 "jasmonate-zim-domain pro	0.466	0.490	0.339	9.3e-05
TAIR|locus:2033607	267	TIFY7 [Arabidopsis thaliana (t	0.426	0.520	0.288	0.00011
TAIR|locus:2018804	274	JAZ5 "jasmonate-zim-domain pro	0.309	0.368	0.286	0.00065

TAIR|locus:2130155 PPD2 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 116/323 (35%), Positives = 157/323 (48%)

Query:     1 MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKX 60
             M  G T ++S+L+KPL  LTE+DISQ+TREDCR++LKEKGMRRPSWNKSQAIQQV+ LK 
Sbjct:     1 MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKA 60

Query:    61 XXXXXXXXXXXXXRRKLYSVPSHSA-VTVK--------ETCEPAP-------CRRQDAPM 104
                          R+ L S P +   VT          E C   P       C R+D+P 
Sbjct:    61 LYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPR 120

Query:   105 PDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAA 164
                   SS +  AD +S     TV+        T    G++ ++    S K         
Sbjct:   121 SAEFSGSSGQFVADKDS---HKTVSVSPRSPAETNAVVGQMTIFY---SGKVNVY----- 169

Query:   165 SPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNI 224
               +P  +KA S       + P  L   GI    SS +I   +   K+VE  Q   E++  
Sbjct:   170 DGVP-PEKARS--IMHFAANPIDLPENGIFA--SSRMISKPMSKEKMVELPQYGLEKAPA 224

Query:   225 SHEDSFDGPTSRKASVQRYREKRKDR-FKNKRKIAMPSSSSLDVYLNRWVGDQFANEQ-L 282
             S +   +G  +RK S+QRY EKRKDR F   +K    +SSSL+++LNR      A  Q L
Sbjct:   225 SRDSDVEGQANRKVSLQRYLEKRKDRRFSKTKKAPGVASSSLEMFLNRQPRMNAAYSQNL 284

Query:   283 NPSDVCSTLQSRPSQT-SPGCGV 304
             + +  C   +S  +QT SP   V
Sbjct:   285 SGTGHC---ESPENQTKSPNISV 304

GO:0005634 "nucleus" evidence=ISM

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006464 PPD1 "PEAPOD 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 107/315 (33%), Positives = 154/315 (48%)

Query:     1 MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKX 60
             M  G + ++S+L KPL  LTE+DISQ+TREDCR++LK+KGMRRPSWNKSQAIQQV+ LK 
Sbjct:     1 MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKA 60

Query:    61 XXXXXXXXXXXXXRRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSE 120
                          R+ L S P +         EP+    +      +  D+ +    DS 
Sbjct:    61 LYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSN-ELEACGRVSYPEDNGACHRMDS- 118

Query:   121 SISPRTTVAAKEAVGQMTIFYSG-KVNVYDDMPSEKAQAILQLA---ASPLPLSQKAPSD 176
                PR+   +  + G       G K  +    P+E ++ + Q+    +  + +    P +
Sbjct:   119 ---PRSAEFSGGS-GHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPE 174

Query:   177 GTTGLQSV---PCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGP 233
                 +      P  L   GI    SS +I   +   K++E  Q   E++N S +   +G 
Sbjct:   175 KARSIMHFAANPIDLPENGIFA--SSRMISKLISKEKMMELPQKGLEKANSSRDSGMEGQ 232

Query:   234 TSRKASVQRYREKRKDR-FKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTL- 291
              +RK S+QRYREKRKDR F   +K    +SSSL+++LN     + A  Q N     S L 
Sbjct:   233 ANRKVSLQRYREKRKDRKFSKAKKCPGVASSSLEMFLNCQPRMKAAYSQ-NLGCTGSPLH 291

Query:   292 -QSRPSQT-SPGCGV 304
              QS  SQT SP   V
Sbjct:   292 SQSPESQTKSPNLSV 306

GO:0005634 "nucleus" evidence=ISM

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147142 JAZ12 "jasmonate-zim-domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 43/133 (32%), Positives = 63/133 (47%)

Query:   136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
             Q+TIF+ G V V+D +PSEK Q IL++AA  +       +  +T +  V     +  +N 
Sbjct:    57 QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAME------TKNSTSISPV----SSPALNR 106

Query:   196 GPSSPVIFPTLQTVKVVENCQLPWEESNISH-EDSFDGPTSRKASVQRYREKRKDRFKNK 254
              PS    F +  T  V      P+    IS    + D P +R+ S+QR+ EKR+DR  NK
Sbjct:   107 APS----FSS--TSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNK 160

Query:   255 RKIAMPSSSSLDV 267
                        DV
Sbjct:   161 NPYPTSDFKKTDV 173

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2027267 TIFY10B [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 48/158 (30%), Positives = 75/158 (47%)

Query:   107 FSGDSSSRLAADSESISPRT-TVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS 165
             FS  SSS    D + I   T +V  +     +TIFY G+V V+DD  +EKA+ ++ LA  
Sbjct:    89 FSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANK 148

Query:   166 PLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNIS 225
                 S K+ +  T  + +         I   P+ PV  P  +T       Q P + +  S
Sbjct:   149 G---SAKSFTCFTAEVNNNHSAYSQKEIASSPN-PVCSPA-KTA-----AQEPIQPNPAS 198

Query:   226 HEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSS 263
                + + P +R+AS+ R+ EKRKDR  +K    +  S+
Sbjct:   199 L--ACELPIARRASLHRFLEKRKDRITSKAPYQIDGSA 234

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2088530 JAZ3 "jasmonate-zim-domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 28/71 (39%), Positives = 38/71 (53%)

Query:   136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
             Q+TIFY+G V VYDD+  EKA+AI+ LA +   + Q   S   T  Q V  H   A ++ 
Sbjct:   178 QLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQVF-SPPQTHQQVV--HHTRASVDS 234

Query:   196 GPSSPVIFPTL 206
                 P   PT+
Sbjct:   235 SAMPPSFMPTI 245

GO:0005634 "nucleus" evidence=ISM

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2202180 JAZ1 "jasmonate-zim-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query:   105 PDFSGDSSSRLAADSESISPRT-TVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLA 163
             P FS  SSS    D   ++  T +V  +     +TIFY+G+V V++D  +EKA+ ++ LA
Sbjct:    94 PSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLA 153

Query:   164 A 164
             +
Sbjct:   154 S 154

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009555 "pollen development" evidence=IMP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009908 "flower development" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2198018 JAZ4 "jasmonate-zim-domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 59/174 (33%), Positives = 82/174 (47%)

Query:   113 SRLAADSESISPR-TTV--AAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS-P-- 166
             S + A   S+ P  TT+  ++K    Q+TIFY+G V VY D+  EKAQAI+ LA + P  
Sbjct:   121 SPIMAPPVSVFPAPTTIRSSSKPLPPQLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHA 180

Query:   167 LPLSQKAP------SDGTTGLQSVP-CHLQTAGINVGP--SSPVIFPT-LQTVKVVENCQ 216
              P+SQ  P      S  TT   ++P   L +    V    SS     T L   K      
Sbjct:   181 KPVSQPKPQKLVHHSLPTTDPPTMPPSFLPSISYIVSETRSSGSNGVTGLGPTKT--KAS 238

Query:   217 LPWEESN----ISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 266
             L    +N     S   +   P +RKAS+ R+ EKRK+R  N     + + SS+D
Sbjct:   239 LASTRNNQTAAFSMAPTVGLPQTRKASLARFLEKRKERVINVSPYYVDNKSSID 292

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0009611 "response to wounding" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2033607 TIFY7 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 43/149 (28%), Positives = 67/149 (44%)

Query:   121 SISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLP--LSQKAPSDGT 178
             S+ PR  VA+  +  Q+TIFY G ++V++D+  +KAQAI+  A + L        P    
Sbjct:   106 SLVPR--VASSGSSPQLTIFYGGTISVFNDISPDKAQAIMLCAGNGLKGETGDSKPVREA 163

Query:   179 TGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEES-NISHEDSFDG-PTSR 236
               +     H   A  +   +    F   +   V     +   ES N +  +     P +R
Sbjct:   164 ERMYGKQIHNTAATSSSSATHTDNFSRCRDTPVAATNAMSMIESFNAAPRNMIPSVPQAR 223

Query:   237 KASVQRYREKRKDRFKNKRKIAMPSSSSL 265
             KAS+ R+ EKRK+R  +    AMP    L
Sbjct:   224 KASLARFLEKRKERLMS----AMPYKKML 248

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2018804 JAZ5 "jasmonate-zim-domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00065, Sum P(2) = 0.00065
 Identities = 33/115 (28%), Positives = 60/115 (52%)

Query:   136 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 195
             Q+TIF+ GKV VY++ P +KA+ I+++A    P+++         +Q+ P + +    N 
Sbjct:    98 QLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTE-------INIQT-PINDE----NN 145

Query:   196 GPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR 250
                S ++ P L   +  +N  L  E+     ++      +R+AS+ R+  KRKDR
Sbjct:   146 NNKSSMVLPDLN--EPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDR 198

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
pfam06200	36	pfam06200, tify, tify domain	2e-11
smart00979	36	smart00979, TIFY, This short possible domain is fo	4e-11
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	2e-04

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 130 AKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS 165
                 Q+TIFY G+V V+DD+P EKAQ I++LA+ 
Sbjct: 1   PSAESAQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 131 KEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAA 164
            E   Q+TIFY G V V+DD+P EKAQ I+ LA 
Sbjct: 2   PEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAG 35

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 233 PTSRKASVQRYREKRKDRFKNKR 255
           P +RKAS+QR+ EKRKDR  +  
Sbjct: 1   PIARKASLQRFLEKRKDRLVSAA 23

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.72
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	99.53
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	92.27

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.72  E-value=5.2e-18  Score=117.41  Aligned_cols=35  Identities=49%  Similarity=0.838  Sum_probs=32.5

Q ss_pred             cccCcceeEEeCcEEEEeCCCCHHHHHHHHHHhcC
Q 020430          131 KEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS  165 (326)
Q Consensus       131 ~~~~~qLTIFY~G~V~VfDdvp~dKA~~Im~lA~~  165 (326)
                      .+.++||||||+|+|+||||||+|||++||+||++
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r   36 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR   36 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence            35689999999999999999999999999999974

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=99.53  E-value=2.2e-15  Score=98.53  Aligned_cols=26  Identities=54%  Similarity=0.764  Sum_probs=10.0

Q ss_pred             hhhHHhhhHHHHHhhhhhccccCCCC
Q 020430          233 PTSRKASVQRYREKRKDRFKNKRKIA  258 (326)
Q Consensus       233 PIARKASLQRFLEKRKDRi~akaPY~  258 (326)
                      |||||+||||||||||||+.+++||.
T Consensus         1 P~aRK~SLqRFLeKRK~R~~~~~PY~   26 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDRLAAKSPYQ   26 (27)
T ss_dssp             -----HHHHHHHHHH-----------
T ss_pred             CchHHHHHHHHHHHHHHhhccCCCCC
Confidence            79999999999999999999999995

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=92.27  E-value=0.086  Score=38.63  Aligned_cols=25  Identities=44%  Similarity=0.617  Sum_probs=20.5

Q ss_pred             HHhhhHHHHHhhhhhc-cccCCCCCC
Q 020430          236 RKASVQRYREKRKDRF-KNKRKIAMP  260 (326)
Q Consensus       236 RKASLQRFLEKRKDRi-~akaPY~~p  260 (326)
                      |+++|+||+|||+.|. ..+..|..-
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~R   26 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESR   26 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchH
Confidence            6889999999999996 556778644

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 41/308 (13%), Positives = 86/308 (27%), Gaps = 75/308 (24%)

Query: 2   SPGETVSRSL--LDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQ--VIC 57
              E V + +  + +  ++     I    R+           R   +N +Q   +  V  
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 58  LKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAA 117
           L+  L+          R+ L  +     V +               +    G +   +A 
Sbjct: 134 LQPYLK---------LRQALLELRPAKNVLIDG-------------VLGS-GKTW--VAL 168

Query: 118 DSESISPRTTVAAKEAVGQMT--IFY--SGKVNVYDDMPSEKAQAILQLAASPLPLSQKA 173
           D           + +   +M   IF+      N  + +  E  Q +L             
Sbjct: 169 D--------VCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDH 219

Query: 174 PSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLP----WEESNISHEDS 229
            S+    + S+   L+                L   K  ENC L              ++
Sbjct: 220 SSNIKLRIHSIQAELR---------------RLLKSKPYENCLLVLLNVQNAKAW---NA 261

Query: 230 FDGP-----TSRKASVQRYR--EKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQL 282
           F+       T+R   V  +           +   + +       + L +++  +   + L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRP--QDL 318

Query: 283 NPSDVCST 290
            P +V +T
Sbjct: 319 -PREVLTT 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	99.46
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	99.36

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00