Citrus Sinensis ID: 020452
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | 2.2.26 [Sep-21-2011] | |||||||
| Q93Y39 | 826 | DEAD-box ATP-dependent RN | yes | no | 0.966 | 0.381 | 0.718 | 1e-123 | |
| A3AVH5 | 832 | DEAD-box ATP-dependent RN | yes | no | 0.904 | 0.354 | 0.685 | 1e-112 | |
| A2XVF7 | 832 | DEAD-box ATP-dependent RN | N/A | no | 0.904 | 0.354 | 0.685 | 1e-112 | |
| Q54TD7 | 940 | ATP-dependent RNA helicas | yes | no | 0.923 | 0.320 | 0.345 | 2e-54 | |
| P0CQ91 | 772 | ATP-dependent RNA helicas | N/A | no | 0.840 | 0.354 | 0.390 | 3e-47 | |
| P0CQ90 | 772 | ATP-dependent RNA helicas | yes | no | 0.840 | 0.354 | 0.390 | 3e-47 | |
| Q0CI35 | 774 | ATP-dependent RNA helicas | N/A | no | 0.880 | 0.370 | 0.368 | 9e-46 | |
| A1DMT9 | 777 | ATP-dependent RNA helicas | N/A | no | 0.889 | 0.373 | 0.360 | 2e-45 | |
| A1CTL8 | 774 | ATP-dependent RNA helicas | N/A | no | 0.889 | 0.374 | 0.366 | 3e-44 | |
| A2QWW0 | 766 | ATP-dependent RNA helicas | yes | no | 0.846 | 0.360 | 0.386 | 4e-44 |
| >sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana GN=RH13 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/316 (71%), Positives = 265/316 (83%), Gaps = 1/316 (0%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+LRALIITP
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS G
Sbjct: 288 TRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAG 347
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++ TV ++
Sbjct: 348 EKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNV 407
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVAIVDL 310
+KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR NVAI+DL
Sbjct: 408 PKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDL 467
Query: 311 TNVSVLANKLEESFIE 326
T S+LA K+EESFI+
Sbjct: 468 TTTSILAPKIEESFIK 483
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica GN=Os04g0510400 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/296 (68%), Positives = 239/296 (80%), Gaps = 1/296 (0%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E AW ELRLHPLL+ ++ RLGFKEPTPIQKAC PAAAHQGKD+IGAAETGSGKTLAFGL
Sbjct: 196 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 255
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+QRLLEE+EKA ++ E ++ + + LRALI+TPTRELA QV DHLKE AK +
Sbjct: 256 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFLR 315
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++VVPIVGG+S EKQERLLK +PE+VVGTPGRLWELMS G +HL++LH+LSFFVLDEADR
Sbjct: 316 IQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADR 375
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
MIE GHF ELQSII+MLP+TNGS+E T +C TV LQ KKRQT VFSAT+ALSA+F
Sbjct: 376 MIERGHFHELQSIIEMLPVTNGSDEQTVGTTPSCETVPILQIKKRQTFVFSATLALSANF 435
Query: 272 RKKLKHGSLKLKQSVN-GLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
RKKLK G + K S + L+SIE LS++A M+ N IVDLT S+L KLEESFIE
Sbjct: 436 RKKLKRGLVTAKASASTDLSSIEALSKQARMKPNAEIVDLTKASILPEKLEESFIE 491
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica GN=OsI_016050 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/296 (68%), Positives = 239/296 (80%), Gaps = 1/296 (0%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E AW ELRLHPLL+ ++ RLGFKEPTPIQKAC PAAAHQGKD+IGAAETGSGKTLAFGL
Sbjct: 196 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 255
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
PI+QRLLEE+EKA ++ E ++ + + LRALI+TPTRELA QV DHLKE AK +
Sbjct: 256 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFLR 315
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
++VVPIVGG+S EKQERLLK +PE+VVGTPGRLWELMS G +HL++LH+LSFFVLDEADR
Sbjct: 316 IQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADR 375
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271
MIE GHF ELQSII+MLP+TNGS+E T +C TV LQ KKRQT VFSAT+ALSA+F
Sbjct: 376 MIERGHFHELQSIIEMLPVTNGSDEQTVGTTPSCETVPILQIKKRQTFVFSATLALSANF 435
Query: 272 RKKLKHGSLKLKQSVN-GLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326
RKKLK G + K S + L+SIE LS++A M+ N IVDLT S+L KLEESFIE
Sbjct: 436 RKKLKRGLVTAKASASTDLSSIEALSKQARMKPNAEIVDLTKASILPEKLEESFIE 491
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Oryza sativa subsp. indica (taxid: 39946) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium discoideum GN=ddx24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 190/373 (50%), Gaps = 72/373 (19%)
Query: 19 AEEELVS-EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
+E++ +S E + + WN L PL++K + LGF +PT IQ + IP A G D+IG
Sbjct: 278 SEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIG 337
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAE--------------------- 116
AA+TGSGKTLAFG+P++QR+L+ K G+ +E K + +
Sbjct: 338 AAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEEEEG 397
Query: 117 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPEL 176
+ L +L+I PTRELA+QVT+H+K + N++V+ IVGGM++++Q+R+L RPE+
Sbjct: 398 RSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKRPEI 457
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP------- 229
VV TPGRLWEL++ G +HLVEL +L +DEADRM+E GHF EL+SI+ LP
Sbjct: 458 VVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHRTAMS 517
Query: 230 ----------------------------MTNGSNEGQSEQTQTCVTVSSLQRK------- 254
M G + +Q Q +
Sbjct: 518 KKERLKKKETEEKRNKRRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNHLTTT 577
Query: 255 -KRQTLVFSAT-IALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN 312
KRQT VFSAT + + D K+ L IE L E+ + + ++D+T
Sbjct: 578 HKRQTFVFSATLVNIPGD------GAPTSQKKKYRKLTPIENLIEKVRFQRDYKLIDVTQ 631
Query: 313 VSVLANKLEESFI 325
+ A L E+ I
Sbjct: 632 KRLTAKNLLETKI 644
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ATP-dependent RNA helicase. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MAK5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 166/310 (53%), Gaps = 36/310 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ + LHP L +S F PT IQ IPA G+D++G AETGSGKTLA+ LPI+
Sbjct: 174 WSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGI-TGRDVVGVAETGSGKTLAYSLPILH 232
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----- 150
LL G+ K K L AL++ PTRELALQV DHL + K
Sbjct: 233 YLL-------------GQRKSKAGIKRPLSALVLCPTRELALQVMDHLNALLKHALATPD 279
Query: 151 --------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
V V +VGG+S +KQ+R+L+ +++V TPGRLW+L+ ++ + TL
Sbjct: 280 GEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATPGRLWDLIKADDELATSVRTLR 339
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE-----QTQTCVTVSSLQRKKRQ 257
F V+DEADRMIENGHF EL+SI+ L + + +G + Q + S R+ Q
Sbjct: 340 FLVIDEADRMIENGHFAELESIV-KLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQ 398
Query: 258 TLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA-NVAIVDLTNVSVL 316
T VFSAT LS D +K LK S K +++E L E+ R N ++DL+ +
Sbjct: 399 TFVFSAT--LSKDLQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGV 456
Query: 317 ANKLEESFIE 326
+ L ES IE
Sbjct: 457 VSSLRESMIE 466
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ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MAK5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 166/310 (53%), Gaps = 36/310 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
W+ + LHP L +S F PT IQ IPA G+D++G AETGSGKTLA+ LPI+
Sbjct: 174 WSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGI-TGRDVVGVAETGSGKTLAYSLPILH 232
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----- 150
LL G+ K K L AL++ PTRELALQV DHL + K
Sbjct: 233 YLL-------------GQRKSKAGIKRPLSALVLCPTRELALQVMDHLNALLKHALATPD 279
Query: 151 --------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
V V +VGG+S +KQ+R+L+ +++V TPGRLW+L+ ++ + TL
Sbjct: 280 GEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATPGRLWDLIKADDELATSVRTLR 339
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE-----QTQTCVTVSSLQRKKRQ 257
F V+DEADRMIENGHF EL+SI+ L + + +G + Q + S R+ Q
Sbjct: 340 FLVIDEADRMIENGHFAELESIV-KLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQ 398
Query: 258 TLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA-NVAIVDLTNVSVL 316
T VFSAT LS D +K LK S K +++E L E+ R N ++DL+ +
Sbjct: 399 TFVFSAT--LSKDLQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGV 456
Query: 317 ANKLEESFIE 326
+ L ES IE
Sbjct: 457 VSSLRESMIE 466
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0CI35|MAK5_ASPTN ATP-dependent RNA helicase mak5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mak5 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 177/307 (57%), Gaps = 20/307 (6%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW L L P ++ S+ +L F PT +QK+CIP G D++G A TGSG
Sbjct: 193 AEEDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPPIL-DGHDVVGKASTGSG 251
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE++ + K ++K E + ALI++PTRELA Q+ H+
Sbjct: 252 KTLAFGIPILEYYLEKKRRETKNKDDKKETSPI--------ALILSPTRELAHQLVKHIG 303
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
EV A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++SGG+ + ++ +
Sbjct: 304 EVITHAPGVNARIALLTGGLSVQKQQRLLNG-ADIVIGTPGRVWEVLSGGQGLISKMKEI 362
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
+ V+DEADR++ GHF+E I+ L ++ +E+ ++ S Q RQTLVF
Sbjct: 363 KYLVVDEADRLLSEGHFKEAHEILAALDREEINDFPGAEEDESDDEDSKTQ---RQTLVF 419
Query: 262 SATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLANK 319
SAT D ++KL G +N S+E L ++ R +D+ VS +A
Sbjct: 420 SAT--FHRDLQQKLAGKGKWTGSDLMNKQESMEYLLKKLNFREEKPKFIDVNPVSQMAEG 477
Query: 320 LEESFIE 326
L+E +E
Sbjct: 478 LKEGIVE 484
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1DMT9|MAK5_NEOFI ATP-dependent RNA helicase mak5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=mak5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 183/308 (59%), Gaps = 18/308 (5%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW+ L L P ++ + ++ F PT +Q+ACIP +G D+IG A TGSG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KTLAFG+PI++ LE+ K + EK +++EK + ALI++PTRELA Q++ H+
Sbjct: 251 KTLAFGIPILEHYLEK--KRDDISAEKEKKSEKDSTP---IALILSPTRELAHQLSKHIG 305
Query: 145 EV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 201
E+ A G+N R+ + GG+S +KQ+RLL ++V+GTPGR+WE++S G+ + ++ +
Sbjct: 306 ELIAQAPGVNARIALLTGGLSVQKQQRLLSG-ADIVIGTPGRVWEILSTGQGLIRKMQQI 364
Query: 202 SFFVLDEADRMIENGHFRELQSIIDMLP-MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260
F V+DEADR++ GHF+E++ I++ L + +G G Q + S +RQTLV
Sbjct: 365 KFLVVDEADRLLSEGHFKEVEEILNALDRVEDGEVPGGENQASEEESDPS---SERQTLV 421
Query: 261 FSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
FSAT D ++KL G ++ S++ L ++ R +D+ +S +A+
Sbjct: 422 FSAT--FHRDLQQKLAGKGKWTGGDVMDKKESMDYLLQKLNFREEKPKFIDMNPISQMAD 479
Query: 319 KLEESFIE 326
L+E +E
Sbjct: 480 NLKEGIVE 487
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=mak5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 175/308 (56%), Gaps = 18/308 (5%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+E + + AW+ L L L+ I ++ F PT +Q ACIP G D++G A TGSG
Sbjct: 189 AEEDDGVDVSAWDALNLSTELLTGISKMKFTSPTAVQAACIPHIL-DGHDVVGKASTGSG 247
Query: 85 KTLAFGLPIMQRLLEE-REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
KTLAFG+PI++ LE+ R+ G ++ +K + + P ALI++PTRELA Q+ H+
Sbjct: 248 KTLAFGIPILEHYLEKNRDGHGDIIGKK--DKKDSTPI----ALILSPTRELAHQLAKHI 301
Query: 144 KEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200
E+ A G+N R+ + GG+S +KQ+RLL A ++V+GTPGR+WE+MS G+ + ++
Sbjct: 302 GELVTQAPGVNARIALLTGGLSVQKQQRLL-AGADIVIGTPGRVWEIMSTGQGLIRKMQK 360
Query: 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260
+ F V+DEADR++ GHF+E++ II L + ++ S R +RQTLV
Sbjct: 361 IKFLVVDEADRLLSEGHFKEVEEIIGALDRVEDGD--VLDEEDEAPEEESDPRSERQTLV 418
Query: 261 FSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMR-ANVAIVDLTNVSVLAN 318
FSAT D ++KL G +N S++ L ++ R +D VS +A
Sbjct: 419 FSAT--FHRDLQQKLAGKGKWTGGDIMNKKESMDYLLQKLNFREEKPKFIDTNPVSQMAE 476
Query: 319 KLEESFIE 326
L+E +E
Sbjct: 477 NLKEGIVE 484
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2QWW0|MAK5_ASPNC ATP-dependent RNA helicase mak5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mak5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 174/300 (58%), Gaps = 24/300 (8%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
AW L L P ++ S+ ++ F PT +QK+CIP G D+IG A TGSGKTLAFG+PI+
Sbjct: 193 AWESLGLSPEILTSLSKMKFTTPTLVQKSCIPQIL-DGHDVIGKASTGSGKTLAFGIPIL 251
Query: 95 QRLLEERE---KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA---K 148
+ LE+R +AGK EEK ++ AP ALI++PTRELA Q+ H+ E+A
Sbjct: 252 EHYLEKRRQDLRAGK--EEKKKDT---API----ALIMSPTRELAHQLAKHIGELALHAP 302
Query: 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
G N R+ + GG+S +KQ+R+L A ++V+GTPGR+WE++S G+ + ++ + F V+DE
Sbjct: 303 GSNARIALLTGGLSVQKQQRVL-AGADIVIGTPGRVWEVLSSGQGLIRKMSEIKFLVIDE 361
Query: 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268
ADR++ GHF+E + I+ L N G E + R +RQTLVFSAT
Sbjct: 362 ADRLLSEGHFKEAEEILGALDRVEEGNFGGEESEDEEKEDA---RSERQTLVFSAT--FH 416
Query: 269 ADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMR-ANVAIVDLTNVSVLANKLEESFIE 326
D ++KL + + + S+E L ++ R +D+ VS +A L+E +E
Sbjct: 417 RDLQQKLAGKARWTGGDIMSNKESMEYLLQKLKFREEKPKFIDVNPVSQMAEGLKEGIVE 476
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | ||||||
| 255554328 | 496 | dead box ATP-dependent RNA helicase, put | 0.960 | 0.631 | 0.820 | 1e-147 | |
| 224107545 | 847 | predicted protein [Populus trichocarpa] | 0.953 | 0.367 | 0.810 | 1e-145 | |
| 356520440 | 810 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.950 | 0.382 | 0.793 | 1e-142 | |
| 225433316 | 788 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.953 | 0.394 | 0.792 | 1e-139 | |
| 449458872 | 848 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.935 | 0.359 | 0.771 | 1e-134 | |
| 449509127 | 784 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.935 | 0.389 | 0.771 | 1e-133 | |
| 357505253 | 798 | DEAD-box ATP-dependent RNA helicase [Med | 0.938 | 0.383 | 0.753 | 1e-131 | |
| 297834580 | 831 | DEAD-box ATP-dependent RNA helicase 13 [ | 0.978 | 0.383 | 0.715 | 1e-125 | |
| 227202696 | 827 | AT3G16840 [Arabidopsis thaliana] | 0.987 | 0.389 | 0.705 | 1e-121 | |
| 79404523 | 826 | DEAD-box ATP-dependent RNA helicase 13 [ | 0.966 | 0.381 | 0.718 | 1e-121 |
| >gi|255554328|ref|XP_002518204.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223542800|gb|EEF44337.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/318 (82%), Positives = 280/318 (88%), Gaps = 5/318 (1%)
Query: 10 VVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA 69
VSNG DD + E V EAE F AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP AA
Sbjct: 139 AAVSNGEDDTDGESVDEAE----FHAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPPAA 194
Query: 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129
HQGKD+IGAAETGSGKTLAFGLPI+QRLLEER+KA L+E GEEAEKY P G LRALII
Sbjct: 195 HQGKDVIGAAETGSGKTLAFGLPILQRLLEERDKAANYLDEMGEEAEKYGPTGLLRALII 254
Query: 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
TPTRELALQVTDHLKE A GIN++VVPIVGGMSTEKQERLLKARPE++VGTPGRLWELMS
Sbjct: 255 TPTRELALQVTDHLKEAAMGINIKVVPIVGGMSTEKQERLLKARPEIIVGTPGRLWELMS 314
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
GGE HLVELH+LSFFVLDEADRMIENGHFRELQSIIDMLPM +GS EG S+ TQ CVT+S
Sbjct: 315 GGESHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMASGSVEGLSQNTQNCVTLS 374
Query: 250 SLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQ-SVNGLNSIETLSERAGMRANVAIV 308
+LQRKKRQT VFSATIALS DFRKKLK GSLK KQ + +GLNSIE LSERAGMR N AI+
Sbjct: 375 NLQRKKRQTFVFSATIALSTDFRKKLKRGSLKPKQLTADGLNSIENLSERAGMRPNAAII 434
Query: 309 DLTNVSVLANKLEESFIE 326
DLTN S+LA+KLEESFIE
Sbjct: 435 DLTNASILAHKLEESFIE 452
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107545|ref|XP_002314517.1| predicted protein [Populus trichocarpa] gi|222863557|gb|EEF00688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/316 (81%), Positives = 280/316 (88%), Gaps = 5/316 (1%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VSN DD E E V E TEF WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ
Sbjct: 144 VSNNKDDVEGESVDE----TEFYGWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 199
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD++GAAETGSGKTLAFGLPI+QRLLEE++KA M + GEEAE++APKG LRALIITP
Sbjct: 200 GKDVVGAAETGSGKTLAFGLPILQRLLEEQDKASNMGDNVGEEAERFAPKGLLRALIITP 259
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELA+QVTDH KE A GIN+RVV IVGGMSTEKQERLLKARPE++VGTPGRLWELMSGG
Sbjct: 260 TRELAIQVTDHFKEAAHGINIRVVSIVGGMSTEKQERLLKARPEIIVGTPGRLWELMSGG 319
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRMIENGHFRELQSIIDMLPM +GS GQS+ ++ C T+S++
Sbjct: 320 EKHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMASGSIGGQSQSSENCQTLSNM 379
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDL 310
Q KKRQT VFSATIALSADFRKKLK GSLK KQS+ +GLNSIE LSERAGMRAN AI+DL
Sbjct: 380 QIKKRQTFVFSATIALSADFRKKLKRGSLKSKQSMADGLNSIEMLSERAGMRANAAIIDL 439
Query: 311 TNVSVLANKLEESFIE 326
TN S+LANKLEESFIE
Sbjct: 440 TNASILANKLEESFIE 455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520440|ref|XP_003528870.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/315 (79%), Positives = 277/315 (87%), Gaps = 5/315 (1%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
+N DD EE V E TEF AWNELRLHPLL+K+I +LGFKEPTPIQKACIPAAAHQG
Sbjct: 158 TNVKDDIGEEDVDE----TEFYAWNELRLHPLLLKAICKLGFKEPTPIQKACIPAAAHQG 213
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
KD++GAAETGSGKTLAFGLPI+QRLLEEREKAG M+ E+GEE EKYA G LRALII PT
Sbjct: 214 KDVVGAAETGSGKTLAFGLPILQRLLEEREKAGNMVGERGEEPEKYASTGLLRALIIAPT 273
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
RELALQVTDHLK VAK INVRV PIVGG+ EKQERLLKA+PE+VVGTPGRLWELMS GE
Sbjct: 274 RELALQVTDHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGE 333
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
KHLVELH+LSFFVLDEADRM++NGHF+ELQSIIDMLPM+N S E S+ Q+CVTVSS Q
Sbjct: 334 KHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNNSAEDNSQHVQSCVTVSSYQ 393
Query: 253 RKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV-NGLNSIETLSERAGMRANVAIVDLT 311
RKKRQTLVFSAT+ALS+DFRKKLK GS+K KQS+ +GLNSIETLSERAGMR+N AI+DLT
Sbjct: 394 RKKRQTLVFSATVALSSDFRKKLKRGSIKQKQSLTDGLNSIETLSERAGMRSNAAIIDLT 453
Query: 312 NVSVLANKLEESFIE 326
N S+LA KLEESFIE
Sbjct: 454 NPSILATKLEESFIE 468
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433316|ref|XP_002282504.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Vitis vinifera] gi|296083755|emb|CBI23744.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/318 (79%), Positives = 274/318 (86%), Gaps = 7/318 (2%)
Query: 10 VVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA 69
VSN DD E + V EAE F WNELRLHPLLMKSI+RLGFK+PTPIQKACIPAAA
Sbjct: 135 ATVSNDKDDVEGDSVDEAE----FYEWNELRLHPLLMKSIHRLGFKQPTPIQKACIPAAA 190
Query: 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129
HQGKD++GA+ETGSGKTLA GLPI+QRLLEEREKA + L E EE KYA G LRALII
Sbjct: 191 HQGKDVVGASETGSGKTLALGLPILQRLLEEREKAAEPLAENSEE--KYAEGGILRALII 248
Query: 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
TPTRELALQVTDHLKEVAKG NVRVVPIVGGMSTEKQERLLKARPE+VVGTPGRLWELMS
Sbjct: 249 TPTRELALQVTDHLKEVAKGTNVRVVPIVGGMSTEKQERLLKARPEIVVGTPGRLWELMS 308
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
GE HLVELH+LSFFVLDEADRM+ENGHF ELQSIID+LP T+GS E S+ T+ C TVS
Sbjct: 309 RGEDHLVELHSLSFFVLDEADRMVENGHFHELQSIIDILPKTSGSMESLSQNTENCFTVS 368
Query: 250 SLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVN-GLNSIETLSERAGMRANVAIV 308
++QRKKRQT VFSATIALSADFRKKLK G+L+ KQ +N GLNSIETLSERAGMR N AIV
Sbjct: 369 NIQRKKRQTFVFSATIALSADFRKKLKRGALRSKQLMNDGLNSIETLSERAGMRPNAAIV 428
Query: 309 DLTNVSVLANKLEESFIE 326
DLTN S++ANKLEESFIE
Sbjct: 429 DLTNASIMANKLEESFIE 446
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458872|ref|XP_004147170.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/311 (77%), Positives = 270/311 (86%), Gaps = 6/311 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D+ E++ V E TE+ AWNELRLHPLLMKSIY+LGFKEPT IQKACIPAAA+QGKD++
Sbjct: 203 DEVEKDAVDE----TEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVV 258
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFGLPI+QR L+EREK+GKM EEKG +A+KYAPK LRALIITPTRELA
Sbjct: 259 GAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKKYAPKSLLRALIITPTRELA 318
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
LQVTDHLK VA GI++RVVPIVGGMSTEKQERLL+ RPE+VVGTPGRLWELMSGGEKHLV
Sbjct: 319 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 378
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
EL LSFFVLDEADRMIENGHFRELQSIIDMLP+TNGS E + + +T QRKKR
Sbjct: 379 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENL-QNAENSLTTPISQRKKR 437
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQS-VNGLNSIETLSERAGMRANVAIVDLTNVSV 315
QTLVFSAT++LS+DFRKKLK S K QS ++GLNSIE LSERAG+R NVA+++LTN SV
Sbjct: 438 QTLVFSATLSLSSDFRKKLKRVSSKPNQSGMDGLNSIEALSERAGIRPNVAVINLTNTSV 497
Query: 316 LANKLEESFIE 326
LAN LEESFIE
Sbjct: 498 LANNLEESFIE 508
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449509127|ref|XP_004163501.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/311 (77%), Positives = 270/311 (86%), Gaps = 6/311 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D+ E++ V E TE+ AWNELRLHPLLMKSIY+LGFKEPT IQKACIPAAA+QGKD++
Sbjct: 183 DEVEKDAVDE----TEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVV 238
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
GAAETGSGKTLAFGLPI+QR L+EREK+GKM EEKG +A+KYAPK LRALIITPTRELA
Sbjct: 239 GAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKKYAPKSLLRALIITPTRELA 298
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
LQVTDHLK VA GI++RVVPIVGGMSTEKQERLL+ RPE+VVGTPGRLWELMSGGEKHLV
Sbjct: 299 LQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRTRPEVVVGTPGRLWELMSGGEKHLV 358
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
EL LSFFVLDEADRMIENGHFRELQSIIDMLP+TNGS E + + +T QRKKR
Sbjct: 359 ELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENL-QNAENSLTTPISQRKKR 417
Query: 257 QTLVFSATIALSADFRKKLKHGSLKLKQS-VNGLNSIETLSERAGMRANVAIVDLTNVSV 315
QTLVFSAT++LS+DFRKKLK S K QS ++GLNSIE LSERAG+R NVA+++LTN SV
Sbjct: 418 QTLVFSATLSLSSDFRKKLKRVSSKPNQSGMDGLNSIEALSERAGIRPNVAVINLTNTSV 477
Query: 316 LANKLEESFIE 326
LAN LEESFIE
Sbjct: 478 LANNLEESFIE 488
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505253|ref|XP_003622915.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|355497930|gb|AES79133.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/312 (75%), Positives = 267/312 (85%), Gaps = 6/312 (1%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D +EE + E TE+ AWNELRLHP LMK+I++LGFKEPTPIQKAC+PAAAHQGKD+I
Sbjct: 149 DSVDEENIDE----TEYYAWNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVI 204
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA-EKYAPKGHLRALIITPTREL 135
GAAETGSGKTLAFGLPI+QRLLEEREKA + GEEA EKYA G LR+LII PTREL
Sbjct: 205 GAAETGSGKTLAFGLPILQRLLEEREKAESISGVNGEEAAEKYATTGLLRSLIIAPTREL 264
Query: 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
ALQV HLK VAK INVRV IVGG+ EKQERLLKARPE+VV TPGRLWELMS GEKHL
Sbjct: 265 ALQVAKHLKAVAKHINVRVTAIVGGILPEKQERLLKARPEIVVATPGRLWELMSSGEKHL 324
Query: 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
+ELH+LSFFVLDEADRM+++GHF+ELQSIIDMLPM+N S+E S+ Q CVTVSS+Q+KK
Sbjct: 325 IELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISSEDNSKDAQNCVTVSSIQKKK 384
Query: 256 RQTLVFSATIALSADFRKKLKHGSLKLKQ-SVNGLNSIETLSERAGMRANVAIVDLTNVS 314
RQTLVFSAT+ALSADFRKKLK GS++ KQ S +GL+SIETLSERAGMR N AI+DLTN S
Sbjct: 385 RQTLVFSATVALSADFRKKLKRGSIQKKQLSTDGLDSIETLSERAGMRPNAAIIDLTNPS 444
Query: 315 VLANKLEESFIE 326
+LA K+EESFIE
Sbjct: 445 ILAAKIEESFIE 456
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834580|ref|XP_002885172.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp. lyrata] gi|297331012|gb|EFH61431.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/320 (71%), Positives = 264/320 (82%), Gaps = 1/320 (0%)
Query: 8 TVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
T VS D EE V EI EF AW +RLHPLLMKSIY LGFK+PT IQKAC
Sbjct: 162 TSDAVSCDDDYKVEEQVEGEEIPPEFSAWGLMRLHPLLMKSIYHLGFKQPTEIQKACFSI 221
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
AA+QGKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGE+A+KYA G+LRAL
Sbjct: 222 AAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEKAQKYAADGYLRAL 281
Query: 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187
IITPTRELALQVTDHLK A+ +NV+VVPIVGGMS+ KQERLLK +PE+VVGTPGRLWEL
Sbjct: 282 IITPTRELALQVTDHLKNAAENLNVKVVPIVGGMSSAKQERLLKGKPEIVVGTPGRLWEL 341
Query: 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVT 247
MS GEKHLVELH+LSFFVLDEADRM+E+GHFRELQSIID+LP+T+ NEG+ + Q+ T
Sbjct: 342 MSAGEKHLVELHSLSFFVLDEADRMVESGHFRELQSIIDLLPVTDRPNEGKMQTVQSSDT 401
Query: 248 VSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVA 306
VS+ +KKRQT VFSATIALS+DFRKKLK GS K K S +G +NSIE LSERAGMR +VA
Sbjct: 402 VSNAPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKPSSSGEVNSIEVLSERAGMRDSVA 461
Query: 307 IVDLTNVSVLANKLEESFIE 326
I+DLT S+LA K+EESFI+
Sbjct: 462 IIDLTTASILAPKIEESFIK 481
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227202696|dbj|BAH56821.1| AT3G16840 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/323 (70%), Positives = 266/323 (82%), Gaps = 1/323 (0%)
Query: 5 NCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKAC 64
N VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC
Sbjct: 162 NQDASAAVSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKAC 221
Query: 65 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124
AA+QGKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+L
Sbjct: 222 FNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYL 281
Query: 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184
RALIITPTRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRL
Sbjct: 282 RALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 341
Query: 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQT 244
WELMS GEKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++
Sbjct: 342 WELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDRPNEGKTQTVKS 401
Query: 245 CVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRA 303
TV ++ +KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR
Sbjct: 402 NDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRD 461
Query: 304 NVAIVDLTNVSVLANKLEESFIE 326
NVAI+DLT S+LA K+EESFI+
Sbjct: 462 NVAIIDLTTTSILAPKIEESFIK 484
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79404523|ref|NP_188307.3| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana] gi|374095486|sp|Q93Y39.3|RH13_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 13 gi|332642351|gb|AEE75872.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/316 (71%), Positives = 265/316 (83%), Gaps = 1/316 (0%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+LRALIITP
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS G
Sbjct: 288 TRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAG 347
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++ TV ++
Sbjct: 348 EKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNV 407
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVAIVDL 310
+KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR NVAI+DL
Sbjct: 408 PKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDL 467
Query: 311 TNVSVLANKLEESFIE 326
T S+LA K+EESFI+
Sbjct: 468 TTTSILAPKIEESFIK 483
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | ||||||
| TAIR|locus:2086775 | 826 | AT3G16840 [Arabidopsis thalian | 0.966 | 0.381 | 0.718 | 1.5e-115 | |
| DICTYBASE|DDB_G0281841 | 940 | ddx24 "DEAD/DEAH box helicase" | 0.374 | 0.129 | 0.532 | 1.9e-51 | |
| ASPGD|ASPL0000042587 | 770 | AN1750 [Emericella nidulans (t | 0.889 | 0.376 | 0.380 | 1.6e-43 | |
| MGI|MGI:1351337 | 857 | Ddx24 "DEAD (Asp-Glu-Ala-Asp) | 0.598 | 0.227 | 0.381 | 8.7e-42 | |
| UNIPROTKB|E2RIC4 | 818 | DDX24 "Uncharacterized protein | 0.607 | 0.242 | 0.382 | 1.2e-41 | |
| UNIPROTKB|G3V529 | 816 | DDX24 "ATP-dependent RNA helic | 0.595 | 0.237 | 0.384 | 1.5e-41 | |
| UNIPROTKB|Q9GZR7 | 859 | DDX24 "ATP-dependent RNA helic | 0.595 | 0.225 | 0.384 | 1.8e-41 | |
| UNIPROTKB|A6H7B6 | 852 | DDX24 "DDX24 protein" [Bos tau | 0.601 | 0.230 | 0.381 | 2.2e-41 | |
| UNIPROTKB|F1NJ62 | 851 | F1NJ62 "Uncharacterized protei | 0.365 | 0.139 | 0.475 | 4.9e-41 | |
| RGD|727929 | 851 | Ddx24 "DEAD (Asp-Glu-Ala-Asp) | 0.598 | 0.229 | 0.371 | 6.2e-41 |
| TAIR|locus:2086775 AT3G16840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
Identities = 227/316 (71%), Positives = 265/316 (83%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 71
VS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
GKD+IGAAETGSGKTLAFGLPI+QRLL+EREK GK+ KGEEA+KYA G+LRALIITP
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191
TRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS G
Sbjct: 288 TRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAG 347
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
EKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ NEG+++ ++ TV ++
Sbjct: 348 EKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNV 407
Query: 252 QRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNG-LNSIETLSERAGMRANVAIVDL 310
+KKRQT VFSATIALS+DFRKKLK GS K KQS +G +NSIE LSERAGMR NVAI+DL
Sbjct: 408 PKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDL 467
Query: 311 TNVSVLANKLEESFIE 326
T S+LA K+EESFI+
Sbjct: 468 TTTSILAPKIEESFIK 483
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| DICTYBASE|DDB_G0281841 ddx24 "DEAD/DEAH box helicase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 1.9e-51, Sum P(2) = 1.9e-51
Identities = 66/124 (53%), Positives = 94/124 (75%)
Query: 109 EEKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ 166
EE+ EE E+ K + L +L+I PTRELA+QVT+H+K + N++V+ IVGGM++++Q
Sbjct: 388 EEEEEEEEEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQ 447
Query: 167 ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIID 226
+R+L RPE+VV TPGRLWEL++ G +HLVEL +L +DEADRM+E GHF EL+SI+
Sbjct: 448 QRVLSKRPEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILK 507
Query: 227 MLPM 230
LP+
Sbjct: 508 TLPI 511
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| ASPGD|ASPL0000042587 AN1750 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 1.6e-43, P = 1.6e-43
Identities = 118/310 (38%), Positives = 174/310 (56%)
Query: 23 LVSEAEIS-TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAET 81
L EA+ + AW L L P + S+ +L F PT +QK+CIP G D+IG A T
Sbjct: 185 LEDEADDDGADISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPIL-DGHDVIGKAST 243
Query: 82 GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 141
GSGKTLAFGLPI++ LE RE+ K ++ + EE EK P ALI++PTRELA Q+
Sbjct: 244 GSGKTLAFGLPILEHYLE-RERR-KTIDSE-EEKEKI-PI----ALILSPTRELAHQLQK 295
Query: 142 HLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198
H+ + A G+N R + GG+S +KQ+RLL+ ++V+GTPGR+WE++ G+ + +
Sbjct: 296 HIYGLISNAPGVNARTALLTGGLSVQKQQRLLETA-DIVIGTPGRVWEVLRTGQGLIRRM 354
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ F V+DEADR++ GHF+E++ I+ L E + V + +RQT
Sbjct: 355 QGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDGGPPDEEDDSSEENV--VPGVERQT 412
Query: 259 LVFSATIALSADFRKKLK-HGSLKLKQSVNGLNSIETLSERAGMRANVA-IVDLTNVSVL 316
LVFSAT D ++KL G +N S+E L ++ R +D+ VS +
Sbjct: 413 LVFSATF--HRDLQQKLAGKGKWTGGDIMNKKESMEYLLQKLNFREEKPKFIDVNPVSQM 470
Query: 317 ANKLEESFIE 326
A L+E +E
Sbjct: 471 AEGLKEGIVE 480
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| MGI|MGI:1351337 Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 8.7e-42, Sum P(2) = 8.7e-42
Identities = 79/207 (38%), Positives = 110/207 (53%)
Query: 100 EREKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +
Sbjct: 362 DAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAIL 421
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 422 VGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGH 481
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSAD 270
F EL +++ML N S S QT T V + K+ T L
Sbjct: 482 FAELSQLLEML---NDSQYNPSRQTLVFSATLTLVHQAPARILHKKHVKKMDKTDKLDLL 538
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 539 MQKVGMRGKPKVIDLTRNEGTVETLTE 565
|
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| UNIPROTKB|E2RIC4 DDX24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 78/204 (38%), Positives = 114/204 (55%)
Query: 100 EREKAGKMLEEKGEEAE--KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+ G++ +E G + K PK L L++TPTRELA+QV H+ VAK ++ +
Sbjct: 321 DEEETGRLKQELGGKMTTCKVHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAIL 380
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L +PE+VV TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 381 VGGMSTQKQQRMLNRQPEIVVATPGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGH 440
Query: 218 FRELQSIIDMLPMTNGSNEGQS---EQTQTCVTVSSLQ-RKKRQTLVFSATIALSADFRK 273
F EL +++ML + + + Q+ T T V + + K+ T T L +K
Sbjct: 441 FAELSQLLEMLGDSQYNPKRQTLIFSATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQK 500
Query: 274 KLKHGSLKLKQSVNGLNSIETLSE 297
G K+ ++ETL+E
Sbjct: 501 IGMRGKPKVIDLTRNEATVETLTE 524
|
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| UNIPROTKB|G3V529 DDX24 "ATP-dependent RNA helicase DDX24" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 80/208 (38%), Positives = 112/208 (53%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 319 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 377
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 378 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 437
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSA 269
HF EL +++ML N S QT T V + K+ T T L
Sbjct: 438 HFAELSQLLEML---NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDL 494
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 495 LMQKIGMRGKPKVIDLTRNEATVETLTE 522
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| UNIPROTKB|Q9GZR7 DDX24 "ATP-dependent RNA helicase DDX24" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 80/208 (38%), Positives = 112/208 (53%)
Query: 100 EREKAGKM---LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++E+ G + L++K + Y PK L L++TPTRELA+QV H+ VA+ ++
Sbjct: 362 DKEQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI 420
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+VGGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E G
Sbjct: 421 LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG 480
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSA 269
HF EL +++ML N S QT T V + K+ T T L
Sbjct: 481 HFAELSQLLEML---NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDL 537
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 538 LMQKIGMRGKPKVIDLTRNEATVETLTE 565
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| UNIPROTKB|A6H7B6 DDX24 "DDX24 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 77/202 (38%), Positives = 113/202 (55%)
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
+ E+AGK+ +E G PK L L++TPTRELA+QV H+ VAK +++ +VG
Sbjct: 361 DEEQAGKLKQELG--GSTVPPKRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVG 418
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
GMST+KQ+R+L +PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 419 GMSTQKQQRMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 478
Query: 220 ELQSIIDMLPMTNGSNEGQS---EQTQTCVTVSSLQ-RKKRQTLVFSATIALSADFRKKL 275
EL +++ML + + + Q+ T T V + + K+ T L +K
Sbjct: 479 ELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAKKMDKTAKLDLLMQKIG 538
Query: 276 KHGSLKLKQSVNGLNSIETLSE 297
G K+ ++ETL+E
Sbjct: 539 MRGKPKVIDLTRKEATVETLTE 560
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| UNIPROTKB|F1NJ62 F1NJ62 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 4.9e-41, Sum P(3) = 4.9e-41
Identities = 58/122 (47%), Positives = 78/122 (63%)
Query: 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT 180
K L L++TPTRELA+QV H+ VAK ++ +VGGM+ +KQER+L +PE+V+ T
Sbjct: 391 KRPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIAT 450
Query: 181 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE 240
PGRLWEL+ HL L L V+DEADRM+E GHF EL ++++L N S
Sbjct: 451 PGRLWELIKERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVL---NDSQYNPKR 507
Query: 241 QT 242
QT
Sbjct: 508 QT 509
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| RGD|727929 Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 77/207 (37%), Positives = 109/207 (52%)
Query: 100 EREKAGKMLEEKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
+ E+AGK+ +E ++ Y P+ L L++TPTRELA+QV H+ VAK + +
Sbjct: 356 DEEQAGKLKQELCDQIAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAIL 415
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E H
Sbjct: 416 VGGMSTQKQQRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDH 475
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQT----QTCVTVSSLQRK---KRQTLVFSATIALSAD 270
F EL +++ML N S + QT T V + K+ T L
Sbjct: 476 FAELSQLLEML---NDSQYNPNRQTLVFSATLTLVHQAPARILHKKHVKKMDKTAKLDLL 532
Query: 271 FRKKLKHGSLKLKQSVNGLNSIETLSE 297
+K G K+ ++ETL+E
Sbjct: 533 MQKIGMRGKPKVIDLTRNEGTVETLTE 559
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93Y39 | RH13_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.7183 | 0.9662 | 0.3813 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_X0418 | hypothetical protein (847 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 326 | |||
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-72 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-60 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 3e-47 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 2e-42 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-40 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 5e-36 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 5e-36 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-34 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 4e-32 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 7e-31 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 3e-30 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 7e-30 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 5e-28 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-25 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 2e-22 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 2e-14 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-13 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 3e-06 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 3e-06 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 2e-05 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 4e-05 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-04 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 5e-04 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 1e-72
Identities = 90/229 (39%), Positives = 128/229 (55%), Gaps = 46/229 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ EL L P L++ IY LGF++PTPIQ IP G+D+IG A+TGSGKT AF +PI++
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILE 59
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+L K +ALI+ PTRELALQ+ + +++ K N++VV
Sbjct: 60 KLDPSP------------------KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV 101
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG S +KQ R LK P +VV TPGRL +L+ E+ ++L + + VLDEADRM++
Sbjct: 102 VIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLL---ERGKLDLSKVKYLVLDEADRMLDM 158
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
G +++ I+ +LP K RQTL+FSAT
Sbjct: 159 GFEDQIREILKLLP------------------------KDRQTLLFSAT 183
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 3e-60
Identities = 86/264 (32%), Positives = 135/264 (51%), Gaps = 52/264 (19%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L L P L++++ LGF+EPTPIQ A IP G+D++G A+TG+GKT AF LP++Q
Sbjct: 31 FASLGLSPELLQALKDLGFEEPTPIQLAAIPLILA-GRDVLGQAQTGTGKTAAFLLPLLQ 89
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRV 154
++L+ E+ + ALI+ PTRELA+Q+ + L+++ K +RV
Sbjct: 90 KILKSVERKY------------------VSALILAPTRELAVQIAEELRKLGKNLGGLRV 131
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG+S KQ LK ++VV TPGRL +L+ G+ L + VLDEADRM++
Sbjct: 132 AVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLD---LSGVETLVLDEADRMLD 188
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSA 269
G +++ I+ LP RQTL+FSAT+ L+
Sbjct: 189 MGFIDDIEKILKALP------------------------PDRQTLLFSATMPDDIRELAR 224
Query: 270 DFRKKLKHGSLKLKQSVNGLNSIE 293
+ + +++ L I+
Sbjct: 225 RYLNDPVEIEVSVEKLERTLKKIK 248
|
Length = 513 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 3e-47
Identities = 78/214 (36%), Positives = 110/214 (51%), Gaps = 48/214 (22%)
Query: 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117
TPIQ IPA GKD++ A TGSGKTLAF LPI+Q LL
Sbjct: 1 TPIQAQAIPAI-LSGKDVLVQAPTGSGKTLAFLLPILQALLP------------------ 41
Query: 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL-KARPEL 176
KG +AL++ PTRELA Q+ + LK++ K + +RV + GG S ++Q R L K + ++
Sbjct: 42 --KKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADI 99
Query: 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE 236
+VGTPGRL +L+ G+ L L L VLDEA R+++ G +L+ I+ LP
Sbjct: 100 LVGTPGRLLDLLRRGKLKL--LKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP------- 150
Query: 237 GQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
RQ L+ SAT+ + +
Sbjct: 151 -----------------PDRQILLLSATLPRNLE 167
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-42
Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 54/246 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
A++ L L P L+ ++ LG+ E TPIQ +PA GKD+I A+TGSGKT AFGL ++
Sbjct: 5 AFSTLPLPPALLANLNELGYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLL 63
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVR 153
Q+L + +++ + AL++ PTRELA QV ++ +A+ I N++
Sbjct: 64 QKL----------------DVKRFRVQ----ALVLCPTRELADQVAKEIRRLARFIPNIK 103
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
V+ + GG+ Q L+ ++VGTPGR+ + + G L L+TL VLDEADRM+
Sbjct: 104 VLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTL---VLDEADRML 160
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT----IA-LS 268
+ G + +II P +RQTL+FSAT IA +S
Sbjct: 161 DMGFQDAIDAIIRQAP------------------------ARRQTLLFSATYPEGIAAIS 196
Query: 269 ADFRKK 274
F++
Sbjct: 197 QRFQRD 202
|
Length = 460 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-40
Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108
I + GF+ P QK I A +D+I AA TGSGKTLA LP ++ L +
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGG----- 55
Query: 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-E 167
R L++ PTRELA Q + LK++ + ++VV + GG S +Q
Sbjct: 56 ----------------RVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLR 99
Query: 168 RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+L + +++V TPGRL +L+ E + L + +LDEA R+++ G +L+ ++ +
Sbjct: 100 KLESGKTDILVTTPGRLLDLL---ENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156
Query: 228 LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD-FRKKLKHGSLKLKQSV 286
LP K Q L+ SAT + + + + +
Sbjct: 157 LP------------------------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVGF 192
Query: 287 NGLNSIE 293
L IE
Sbjct: 193 TPLEPIE 199
|
Length = 201 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (340), Expect = 5e-36
Identities = 88/246 (35%), Positives = 124/246 (50%), Gaps = 43/246 (17%)
Query: 20 EEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 79
E+ +V E T F ++ L P LM +I+ LGF TPIQ A + G D IG A
Sbjct: 76 EDFVVEPQEGKTRF---HDFNLAPELMHAIHDLGFPYCTPIQ-AQVLGYTLAGHDAIGRA 131
Query: 80 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139
+TG+GKT AF + I+ +LL+ E+Y G RALII PTREL +Q+
Sbjct: 132 QTGTGKTAAFLISIINQLLQ-----------TPPPKERY--MGEPRALIIAPTRELVVQI 178
Query: 140 TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVEL 198
+ K + V+ VGGM +KQ + L+AR +++V TPGRL + GE H L
Sbjct: 179 AKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVH---L 235
Query: 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 258
+ VLDEADRM++ G +++ II P +++RQT
Sbjct: 236 DMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR----------------------KEERQT 273
Query: 259 LVFSAT 264
L+FSAT
Sbjct: 274 LLFSAT 279
|
Length = 475 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 5e-36
Identities = 79/230 (34%), Positives = 118/230 (51%), Gaps = 46/230 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL L L++++ G+ PT IQ IP A G+D++G+A TG+GKT AF LP +Q
Sbjct: 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQ 61
Query: 96 RLLE-EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
LL+ R K+G P R LI+TPTRELA+QV D +E+AK ++ +
Sbjct: 62 HLLDFPRRKSG-------------PP----RILILTPTRELAMQVADQARELAKHTHLDI 104
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
I GG++ + ++VV TPGRL + + + TL +LDEADRM++
Sbjct: 105 ATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETL---ILDEADRMLD 161
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
G F Q T+++ R ++QTL+FSAT
Sbjct: 162 MG-F-----------------------AQDIETIAAETRWRKQTLLFSAT 187
|
Length = 434 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-34
Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 46/232 (19%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+++ L L P +++++ G++EPTPIQ+ IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKEVAKGINV 152
Q L + KG +RALI+TPTRELA Q+ +++++ +K +N+
Sbjct: 61 QHL----------------ITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNI 104
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
R + + GG+S Q L+ +++V TPGRL +L ++ V+L + VLDEADRM
Sbjct: 105 RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDL---EHQNAVKLDQVEILVLDEADRM 161
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
++ G +++ ++ LP KRQ L+FSAT
Sbjct: 162 LDMGFIHDIRRVLAKLP------------------------AKRQNLLFSAT 189
|
Length = 456 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 18/180 (10%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
L P L+ ++ G++ PTPIQ IPAA G+ ++ +A+TGSGKT +F +PI+ R
Sbjct: 128 LPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTI 186
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
R G +E+ P A+++TPTREL +QV D K + KG+ + +VGG
Sbjct: 187 R---------SGHPSEQRNP----LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGG 233
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
+ +Q ++ EL+VGTPGRL +L+S KH +EL +S VLDE D M+E G FR+
Sbjct: 234 DAMPQQLYRIQQGVELIVGTPGRLIDLLS---KHDIELDNVSVLVLDEVDCMLERG-FRD 289
|
Length = 518 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 7e-31
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 38/231 (16%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++ LHP L+ + GF TPIQ +P A G D+ G A+TG+GKTLAF + +M
Sbjct: 11 FSSFDLHPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMN 69
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
RLL A + E+ RALI+ PTRELA+Q+ + + +R
Sbjct: 70 RLLSRPALADRKPEDP-------------RALILAPTRELAIQIHKDAVKFGADLGLRFA 116
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG+ +KQ LL+ ++++ TPGRL + + + +V LH VLDEADRM +
Sbjct: 117 LVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVK--QHKVVSLHACEICVLDEADRMFDL 174
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266
G ++++ ++ +P +R RQTL+FSAT++
Sbjct: 175 GFIKDIRFLLRRMP----------------------ERGTRQTLLFSATLS 203
|
Length = 572 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 74/204 (36%), Positives = 117/204 (57%), Gaps = 28/204 (13%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
AE T F +L L +++++ LG+++P+PIQ CIP + G+D++G A+TGSGKT
Sbjct: 2 AEFETTF---ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKT 57
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF LP++ L + E AP+ L++ PTRELA+QV + + +
Sbjct: 58 AAFSLPLLHNL----------------DPELKAPQ----ILVLAPTRELAVQVAEAMTDF 97
Query: 147 AKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+K + V VV + GG + Q R L+ P++VVGTPGRL + + G ++L LS V
Sbjct: 98 SKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLV 154
Query: 206 LDEADRMIENGHFRELQSIIDMLP 229
LDEAD M+ G ++++I+ +P
Sbjct: 155 LDEADEMLRMGFIEDVETIMAQIP 178
|
Length = 629 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-30
Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 49/193 (25%)
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
+D++ AA TGSGKTLA LPI++ L + + L++ PT
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGG---------------------QVLVLAPT 39
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192
RELA QV + LKE+ ++V ++GG S ++QE+LL + ++VVGTPGR L+ E
Sbjct: 40 RELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGR---LLDELE 95
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
+ + L L +LDEA R++ G I+
Sbjct: 96 RLKLSLKKLDLLILDEAHRLLNQGFGLLGLKIL------------------------LKL 131
Query: 253 RKKRQTLVFSATI 265
K RQ L+ SAT
Sbjct: 132 PKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 81/268 (30%), Positives = 122/268 (45%), Gaps = 62/268 (23%)
Query: 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM-----QRLLE 99
++KS+ GF EPTPIQ P A G+D+IG AETGSGKTLAF LP + Q LL
Sbjct: 141 ILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL- 198
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
R G ++ L++ PTRELA Q+ + + +R G
Sbjct: 199 -RYGDGPIV------------------LVLAPTRELAEQIREQCNKFGASSKIRNTVAYG 239
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 219
G+ Q L+ E+++ PGRL + + E ++ L +++ VLDEADRM++ G
Sbjct: 240 GVPKRGQIYALRRGVEILIACPGRLIDFL---ESNVTNLRRVTYLVLDEADRMLDMGFEP 296
Query: 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT-----IALSADFRKK 274
+++ I+ + R RQTL++SAT +L+ D K+
Sbjct: 297 QIRKIVSQI------------------------RPDRQTLMWSATWPKEVQSLARDLCKE 332
Query: 275 ----LKHGSLKLKQSVNGLNSIETLSER 298
+ GSL L N + + E
Sbjct: 333 EPVHVNVGSLDLTACHNIKQEVFVVEEH 360
|
Length = 545 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 39/228 (17%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
+ LHP +++++ + GF TPIQ +P G+D+ G A+TG+GKT+AF L
Sbjct: 12 DFALHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYL 70
Query: 98 LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
L + + + RALI+ PTRELA+Q+ + +A+ +++
Sbjct: 71 LSHPAPEDRKVNQP-------------RALIMAPTRELAVQIHADAEPLAQATGLKLGLA 117
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217
GG +KQ ++L++ ++++GT GRL + + L + VLDEADRM + G
Sbjct: 118 YGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVVLDEADRMFDLGF 174
Query: 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++++ + +P +R ++FSAT+
Sbjct: 175 IKDIRWLFRRMPPA----------------------NQRLNMLFSATL 200
|
Length = 423 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-22
Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 27/202 (13%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTL 87
EI FDA L+L+ L++ IY GF++P+ IQ+ I G D IG A++G+GKT
Sbjct: 25 EIVDSFDA---LKLNEDLLRGIYSYGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTA 80
Query: 88 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147
F + +Q + Y +ALI+ PTRELA Q+ + +
Sbjct: 81 TFVIAALQLI-------------------DYDLNA-CQALILAPTRELAQQIQKVVLALG 120
Query: 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
+ VR VGG LKA +VVGTPGR+++++ +K + + L F+LD
Sbjct: 121 DYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMI---DKRHLRVDDLKLFILD 177
Query: 208 EADRMIENGHFRELQSIIDMLP 229
EAD M+ G ++ + LP
Sbjct: 178 EADEMLSRGFKGQIYDVFKKLP 199
|
Length = 401 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 40 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLE 99
L P + + R F TP Q+ IP H G++++ A TGSGKT A LP++ LL
Sbjct: 7 ILDPRVREWFKR-KFTSLTPPQRYAIPEI-HSGENVLIIAPTGSGKTEAAFLPVINELLS 64
Query: 100 EREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 159
+ + + AL I+P + L + L+E + + + V G
Sbjct: 65 LGKG---------------KLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHG 109
Query: 160 GMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+++++LK P +++ TP L ++ K L + + ++DE + E+
Sbjct: 110 DTPQSEKQKMLKNPPHILITTPESL-AILLNSPKFRELLRDVRYVIVDEIHALAES 164
|
Length = 814 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 41/208 (19%)
Query: 14 NGPDDAEEELVSEAEI------STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPA 67
+ E ++ + EI ++EF + L L+K+ G + Q +
Sbjct: 26 KDAEGQEGSILRDPEIEARPGKTSEFPELRDESLKSALVKA----GIERLYSHQVDAL-R 80
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
+G++++ TGSGKT +F LPI+ LL + RAL
Sbjct: 81 LIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---------------------RAL 119
Query: 128 IITPTRELALQVTDHLKEVAK-----GINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182
++ PT LA D + + + V G E++ +++ P++++ P
Sbjct: 120 LLYPTNALA---NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPD 176
Query: 183 RLW-ELMSGGEKHLVELHTLSFFVLDEA 209
L L+ + L L L + V+DE
Sbjct: 177 MLHYLLLRNHDAWLWLLRNLKYLVVDEL 204
|
Length = 851 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 29/141 (20%)
Query: 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113
F TP Q+ IP H+GK+++ ++ TGSGKTLA L I+ L + G+ LE+K
Sbjct: 30 FGTFTPPQRYAIPLI-HEGKNVLISSPTGSGKTLAAFLAIIDELF-RLGREGE-LEDK-- 84
Query: 114 EAEKYAPKGHLRALIITPTRELA-------LQVTDHLKEVAKGINVRVVPIVGGMST--- 163
+ L ++P R L + ++E+AK + I + T
Sbjct: 85 ----------VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDT 134
Query: 164 ---EKQERLLKARPELVVGTP 181
EKQ ++LK P +++ TP
Sbjct: 135 SSYEKQ-KMLKKPPHILITTP 154
|
Length = 876 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115
P P Q AAA +G+ + A TGSGKTLA LP + L
Sbjct: 13 TPRPFQLEMW-AAALEGRSGLLIAPTGSGKTLAGFLPSLIDLAGPE-------------- 57
Query: 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAK--GINVRVVPIVGGMSTEKQERLLKAR 173
PK L L ITP R LA+ + +L+ + G+ +RV G S+ ++ R K
Sbjct: 58 ---KPKKGLHTLYITPLRALAVDIARNLQAPIEELGLPIRVETRTGDTSSSERARQRKKP 114
Query: 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
P++++ TP L L+ L V+DE
Sbjct: 115 PDILLTTPESL-ALLLSYPDAARLFKDLRCVVVDE 148
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A TGSGKTLA L + RL E GE+ + + R L I+P + L
Sbjct: 3 APTGSGKTLAAFLYALDRLFREG----------GEDTREAHKRKTSRILYISPIKALGTD 52
Query: 139 VTDHLKEVAKGI------------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW- 185
V +L+ KGI N+RV G +++ +L + P++++ TP L+
Sbjct: 53 VQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYL 112
Query: 186 ELMSGGEKHLVELHTLSFFVLDE 208
L S + L + T+ ++DE
Sbjct: 113 MLTSRARETLRGVETV---IIDE 132
|
Length = 1490 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 30/151 (19%)
Query: 59 PIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118
P Q+A + ++++ +A TGSGKTL L I+ LLE K
Sbjct: 35 PQQEA-VEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGK--------------- 78
Query: 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV 178
+ I P + LA + + + + + +RV G + ERL AR +++V
Sbjct: 79 -------VVYIVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDD-ERL--ARYDVIV 127
Query: 179 GTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
TP +L L K + + V+DE
Sbjct: 128 TTPEKLDSLTR---KRPSWIEEVDLVVIDEI 155
|
Length = 766 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 16 PDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDI 75
P+ + V+ E +EL + + + R G +E P+Q + A +G+++
Sbjct: 176 PELTRYDEVTAETDEVERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENL 235
Query: 76 IGAAETGSGKTLAFGLPIMQRLLEEREK 103
+ + T SGKTL L + RLL +K
Sbjct: 236 LVVSATASGKTLIGELAGIPRLLSGGKK 263
|
Length = 830 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 29/190 (15%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
E L + A + + AW HP ++ ++ G P Q A AH G+ ++ A
Sbjct: 5 EHLPARAGRTAPWPAW----AHPDVVAALEAAGIHRPWQHQ-ARAAELAHAGRHVVVATG 59
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
T SGK+LA+ LP++ L ++ AL + PT+ LA
Sbjct: 60 TASGKSLAYQLPVLSALADDPRA---------------------TALYLAPTKALAADQL 98
Query: 141 DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEKHLVELH 199
++E+ VR G TE + R + V+ P L ++ + L
Sbjct: 99 RAVRELTLR-GVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLR 156
Query: 200 TLSFFVLDEA 209
L + V+DE
Sbjct: 157 RLRYVVIDEC 166
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.98 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.98 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.98 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.96 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.96 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.96 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.96 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.96 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.96 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.95 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.94 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.94 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.92 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.92 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.92 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.91 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.91 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.9 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.89 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.89 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.89 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.89 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.89 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.89 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.88 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.88 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.87 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.87 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.85 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.84 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.84 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.84 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.83 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.82 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.81 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.8 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.8 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.8 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.78 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.78 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.78 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.77 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.76 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.75 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.74 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.73 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.72 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.71 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.71 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.67 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.66 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.66 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.66 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.64 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.62 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.61 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.59 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.57 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.56 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.56 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.55 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.53 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.51 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.47 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.46 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.45 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.42 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.41 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.41 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.4 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.39 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.36 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.31 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 99.23 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 99.23 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.2 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.2 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.18 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.18 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.16 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.14 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.13 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 99.12 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.12 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.12 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.09 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.07 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.05 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.02 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.01 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.98 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 98.96 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.95 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.91 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.9 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.83 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.74 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.73 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.72 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.69 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.69 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.57 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.54 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.51 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.5 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.37 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.32 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.3 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 98.27 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.22 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.21 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.19 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.18 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 98.15 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 98.14 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 98.13 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.1 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 98.09 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.07 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 98.06 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.06 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.05 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.05 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.04 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.95 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.95 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.94 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.93 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.93 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 97.92 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.87 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.85 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.83 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 97.82 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.81 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 97.66 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.65 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 97.63 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 97.57 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.55 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 97.51 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.47 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.46 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.45 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 97.44 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.4 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 97.37 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.29 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.24 | |
| PRK08181 | 269 | transposase; Validated | 97.2 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 97.2 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.19 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.13 | |
| PRK06526 | 254 | transposase; Provisional | 97.03 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 96.97 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 96.92 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 96.85 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.85 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 96.81 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 96.77 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 96.73 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.68 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 96.68 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.65 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 96.6 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 96.56 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 96.54 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.5 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.5 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 96.46 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.45 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 96.41 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.39 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 96.38 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 96.37 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.36 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.36 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.27 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 96.27 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 96.26 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 96.21 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 96.21 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.19 | |
| PRK08116 | 268 | hypothetical protein; Validated | 96.19 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 96.16 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 96.16 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 96.15 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.15 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 96.14 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 96.09 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.08 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 96.06 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 96.05 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 96.04 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.01 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 96.01 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 96.0 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 95.96 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 95.93 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 95.92 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 95.91 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 95.9 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 95.84 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 95.81 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 95.77 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 95.75 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.72 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 95.71 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 95.68 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 95.64 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 95.61 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 95.61 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 95.56 | |
| PRK08727 | 233 | hypothetical protein; Validated | 95.56 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 95.55 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 95.52 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 95.5 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 95.48 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 95.47 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 95.46 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 95.45 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 95.42 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 95.41 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 95.41 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 95.4 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 95.36 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 95.35 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 95.34 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 95.27 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 95.22 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 95.19 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 95.18 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.18 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 95.17 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 95.17 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 95.16 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 95.13 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 95.12 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 95.11 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.09 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 95.03 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 95.02 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 95.0 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 94.99 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 94.96 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.95 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 94.89 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 94.87 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 94.86 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 94.86 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 94.84 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 94.83 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 94.8 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 94.8 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 94.79 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 94.79 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 94.77 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 94.69 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 94.67 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 94.65 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 94.65 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 94.6 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 94.55 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.54 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 94.53 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 94.52 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 94.4 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 94.38 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 94.36 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 94.31 | |
| PHA03372 | 668 | DNA packaging terminase subunit 1; Provisional | 94.29 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 94.28 | |
| PF13173 | 128 | AAA_14: AAA domain | 94.21 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 94.21 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 94.12 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 94.1 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 94.1 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 94.05 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 93.93 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 93.88 | |
| PF05729 | 166 | NACHT: NACHT domain | 93.87 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.84 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 93.82 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 93.82 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 93.81 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 93.81 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 93.81 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 93.79 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 93.77 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 93.75 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 93.74 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 93.73 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 93.71 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 93.68 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 93.62 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 93.62 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 93.56 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 93.55 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 93.53 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 93.45 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 93.44 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 93.4 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 93.4 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 93.36 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 93.32 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 93.3 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 93.3 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 93.26 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 93.24 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 93.13 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 93.08 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 93.08 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 93.04 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 92.99 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 92.96 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 92.95 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 92.88 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 92.85 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 92.84 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 92.83 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 92.81 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 92.77 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 92.71 | |
| PRK13764 | 602 | ATPase; Provisional | 92.7 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 92.62 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 92.62 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 92.57 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 92.55 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 92.39 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 92.39 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 92.32 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 92.27 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 92.21 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 92.12 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 92.07 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 92.04 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.02 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 91.94 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 91.9 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 91.87 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 91.86 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 91.85 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 91.85 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 91.79 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 91.76 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 91.76 | |
| PTZ00110 | 545 | helicase; Provisional | 91.74 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 91.68 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 91.58 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 91.46 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 91.45 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 91.34 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 91.27 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 91.23 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 91.18 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 91.14 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 91.1 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 91.09 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 90.81 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 90.79 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 90.78 | |
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 90.74 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 90.7 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 90.65 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 90.62 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 90.53 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 90.5 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 90.45 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 90.43 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 90.39 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 90.3 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 90.21 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 90.12 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 90.12 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 89.97 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 89.92 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 89.71 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 89.69 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 89.59 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 89.57 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 89.53 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 89.52 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 89.42 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 89.38 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 89.07 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 89.01 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 88.96 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 88.93 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 88.92 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 88.84 | |
| PRK13822 | 641 | conjugal transfer coupling protein TraG; Provision | 88.72 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 88.65 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 88.59 | |
| TIGR03743 | 634 | SXT_TraD conjugative coupling factor TraD, SXT/TOL | 88.58 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 88.57 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 88.55 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 88.42 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 88.29 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 88.25 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 88.24 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 88.21 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 88.15 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 88.14 | |
| PTZ00424 | 401 | helicase 45; Provisional | 88.09 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 88.07 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 88.01 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 87.97 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 87.84 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 87.83 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 87.77 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 87.76 | |
| TIGR02784 | 1141 | addA_alphas double-strand break repair helicase Ad | 87.62 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 87.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 87.54 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 87.52 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 87.47 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 87.45 | |
| TIGR03754 | 643 | conj_TOL_TraD conjugative coupling factor TraD, TO | 87.45 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 87.41 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 87.41 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 87.39 | |
| PRK13880 | 636 | conjugal transfer coupling protein TraG; Provision | 87.39 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 87.36 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 87.35 | |
| TIGR02767 | 623 | TraG-Ti Ti-type conjugative transfer system protie | 87.16 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 87.08 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 87.07 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 87.0 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 86.98 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 86.95 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 86.93 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 86.81 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 86.67 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 86.51 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 86.44 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 86.3 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP bindi | 86.3 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 86.17 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 86.13 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 86.08 | |
| PHA02244 | 383 | ATPase-like protein | 85.97 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 85.84 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 85.75 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 85.72 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 85.67 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 85.66 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 85.6 | |
| PRK13876 | 663 | conjugal transfer coupling protein TraG; Provision | 85.58 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 85.56 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 85.54 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 85.37 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 85.35 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 85.32 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 85.25 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 85.24 | |
| COG4185 | 187 | Uncharacterized protein conserved in bacteria [Fun | 85.22 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 85.16 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 85.05 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 84.93 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 84.92 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 84.85 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 84.8 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 84.67 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 84.59 |
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=304.83 Aligned_cols=221 Identities=41% Similarity=0.698 Sum_probs=192.3
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+...+|.+|++++.++++++..||..||++|+++||.++ .|+|+|..|.||||||.+|++||+++++..
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 567789999999999999999999999999999999995 999999999999999999999999999864
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
...++++|++||||||.|+.+.++.++...|+++.++.||.+...+...+.+.+||+|+|||+|++++.+
T Consensus 127 ----------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~ 196 (476)
T KOG0330|consen 127 ----------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLEN 196 (476)
T ss_pred ----------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHh
Confidence 2347999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHH
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 270 (326)
. +.+++.+++++|+||||+++++.|...+..|+..+| .++|+++|||||+...
T Consensus 197 T--kgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip------------------------~erqt~LfsATMt~kv- 249 (476)
T KOG0330|consen 197 T--KGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP------------------------RERQTFLFSATMTKKV- 249 (476)
T ss_pred c--cCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC------------------------ccceEEEEEeecchhh-
Confidence 3 347789999999999999999999999999999999 7899999999998553
Q ss_pred HHHHhhcccccccc---ccCccccHHHHHHHhCC
Q 020452 271 FRKKLKHGSLKLKQ---SVNGLNSIETLSERAGM 301 (326)
Q Consensus 271 ~~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~ 301 (326)
+.|.+..++... ....-..++.+.+.|-|
T Consensus 250 --~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylf 281 (476)
T KOG0330|consen 250 --RKLQRASLDNPVKVAVSSKYQTVDHLKQTYLF 281 (476)
T ss_pred --HHHHhhccCCCeEEeccchhcchHHhhhheEe
Confidence 333333333221 12244556666666644
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=316.62 Aligned_cols=269 Identities=43% Similarity=0.668 Sum_probs=221.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
+.++..|.+|.++..++++|..+||..||++|..+||.+++...|++..|.||||||++|-+||++.+....+.
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~------ 250 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDD------ 250 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccch------
Confidence 46777999999999999999999999999999999999974448999999999999999999999976543221
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
..+.......+..+.+||++||||||.|+...+..+++..++++..++||.....+.+.++..++|+|+||||||.++.
T Consensus 251 -s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 251 -SQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred -HhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHH
Confidence 1111112222333469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
.+......++++++||+||+|+|++.|+++.+..++..|... +. +..+|+++||||++...
T Consensus 330 e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~-~~------------------~~qrQTlVFSATlt~~~ 390 (731)
T KOG0347|consen 330 EDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEE-QK------------------NRQRQTLVFSATLTLVL 390 (731)
T ss_pred hhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhh-hc------------------ccccceEEEEEEeehhh
Confidence 887777889999999999999999999999999999998711 11 15689999999998553
Q ss_pred HHHHHhhccccccccccCccccHHHHHHHhCCccCcEEEecCChHHHHhhhhhhccC
Q 020452 270 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 326 (326)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (326)
+......+..... .......++.+.+..+|+.++.|||+++.+.+++.|.|+.|+
T Consensus 391 ~~~~~~~~k~~~k--~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~ 445 (731)
T KOG0347|consen 391 QQPLSSSRKKKDK--EDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIE 445 (731)
T ss_pred cChhHHhhhccch--hhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhc
Confidence 3322222111111 112334578899999999999999999999999999998775
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=307.58 Aligned_cols=192 Identities=44% Similarity=0.695 Sum_probs=178.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..+|.+|+|+-++++++..+||..|||+|..+||..+ -|+|++.||.||||||.+|++|++++++...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrP----------- 247 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRP----------- 247 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCc-----------
Confidence 3489999999999999999999999999999999985 7999999999999999999999999997643
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
......|+|||+|||+|+.|++...++++...++.++++.||.+...+...++.+|||+|+|||+|.++|.+..
T Consensus 248 ------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~ 321 (691)
T KOG0338|consen 248 ------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP 321 (691)
T ss_pred ------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC
Confidence 22446799999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.+.++++.+||+||||+|++.+|.+.+..|+..+| +.+|+++|||||+..
T Consensus 322 --sf~ldsiEVLvlDEADRMLeegFademnEii~lcp------------------------k~RQTmLFSATMtee 371 (691)
T KOG0338|consen 322 --SFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCP------------------------KNRQTMLFSATMTEE 371 (691)
T ss_pred --CccccceeEEEechHHHHHHHHHHHHHHHHHHhcc------------------------ccccceeehhhhHHH
Confidence 37789999999999999999999999999999999 889999999999733
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=305.81 Aligned_cols=200 Identities=39% Similarity=0.626 Sum_probs=181.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
.|+++++++....+++..||..|||+|.+.||.++ .|+|++..|.||||||++|++|++.++.....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 79999999999999999999999999999999995 99999999999999999999999999976311
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
....+.+|++|||+||||||.|+.+.+.++...++++..+++||.....|.+.+.++.+|+|+||++|.+++..+.
T Consensus 159 --~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-- 234 (519)
T KOG0331|consen 159 --KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-- 234 (519)
T ss_pred --cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC--
Confidence 2345668999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 273 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~ 273 (326)
.+++++.++|+||||+|+++||..++..|+..++. +.+|++++|||+|.. ..+++
T Consensus 235 -~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~-----------------------~~rQtlm~saTwp~~v~~lA~ 290 (519)
T KOG0331|consen 235 -LNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR-----------------------PDRQTLMFSATWPKEVRQLAE 290 (519)
T ss_pred -ccccceeEEEeccHHhhhccccHHHHHHHHHhcCC-----------------------CcccEEEEeeeccHHHHHHHH
Confidence 88999999999999999999999999999999962 456999999999955 33444
Q ss_pred Hh
Q 020452 274 KL 275 (326)
Q Consensus 274 ~l 275 (326)
.+
T Consensus 291 ~f 292 (519)
T KOG0331|consen 291 DF 292 (519)
T ss_pred HH
Confidence 43
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=305.55 Aligned_cols=188 Identities=44% Similarity=0.749 Sum_probs=172.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
..|++|++++.+++++.++||..|||+|.++||.++ .|+|+++.|+||||||++|++|+++.+....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 689999999999999999999999999999999996 8999999999999999999999999964310
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
. .....+||++||||||.|+++.+..+.... ++++..++||.+...+...+..++||||+||+++++++.++
T Consensus 96 -----~-~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~- 168 (513)
T COG0513 96 -----E-RKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG- 168 (513)
T ss_pred -----c-cCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-
Confidence 0 111119999999999999999999999988 79999999999999999888888999999999999999876
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..+++.++++|+||||+|+++||.+.+..|+..+| ..+|+++||||++.
T Consensus 169 --~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p------------------------~~~qtllfSAT~~~ 217 (513)
T COG0513 169 --KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP------------------------PDRQTLLFSATMPD 217 (513)
T ss_pred --CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 38899999999999999999999999999999999 67999999999996
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=307.01 Aligned_cols=209 Identities=32% Similarity=0.506 Sum_probs=185.1
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
++.++|+++.+|++++|++.++++|+++||..|+|+|.++||.++ +|+|++++||||||||++|++|++.++....
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~--- 196 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQP--- 196 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---
Confidence 567889999999999999999999999999999999999999995 8999999999999999999999998875431
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
......++++|||+||++||.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|
T Consensus 197 ------------~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL 264 (545)
T PTZ00110 197 ------------LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRL 264 (545)
T ss_pred ------------cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 11123467999999999999999999999999889999999999998888888888999999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++..+. ..++++++||+||||+|++++|...+..++..++ +.+|++++|||
T Consensus 265 ~d~l~~~~---~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------~~~q~l~~SAT 317 (545)
T PTZ00110 265 IDFLESNV---TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------PDRQTLMWSAT 317 (545)
T ss_pred HHHHHcCC---CChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------CCCeEEEEEeC
Confidence 99997653 6788999999999999999999999999999887 77999999999
Q ss_pred ccCc-HHHHHHhh
Q 020452 265 IALS-ADFRKKLK 276 (326)
Q Consensus 265 l~~~-~~~~~~l~ 276 (326)
++.. ..+.+++.
T Consensus 318 ~p~~v~~l~~~l~ 330 (545)
T PTZ00110 318 WPKEVQSLARDLC 330 (545)
T ss_pred CCHHHHHHHHHHh
Confidence 9854 34444443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=299.28 Aligned_cols=211 Identities=36% Similarity=0.569 Sum_probs=183.5
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+.+..+|+++.+|++++|++.+++.|+..||..|||+|.++||.++ +|+|++++||||||||++|++|++.++...+..
T Consensus 111 ~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~ 189 (518)
T PLN00206 111 VKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSG 189 (518)
T ss_pred ecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccc
Confidence 3456788999999999999999999999999999999999999996 899999999999999999999999988643211
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
......++++||++||++||.|+++.++.+.+..++++..++||.....+...+..+++|+|+||++
T Consensus 190 -------------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgr 256 (518)
T PLN00206 190 -------------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGR 256 (518)
T ss_pred -------------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHH
Confidence 1112356799999999999999999999999888899999999998888877788899999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
|.+++.... ..++++++||+||||+|++++|...+..++..++ .+|++++||
T Consensus 257 L~~~l~~~~---~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-------------------------~~q~l~~SA 308 (518)
T PLN00206 257 LIDLLSKHD---IELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-------------------------QPQVLLFSA 308 (518)
T ss_pred HHHHHHcCC---ccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-------------------------CCcEEEEEe
Confidence 999997653 6789999999999999999999999999988775 479999999
Q ss_pred eccCc-HHHHHHhh
Q 020452 264 TIALS-ADFRKKLK 276 (326)
Q Consensus 264 Tl~~~-~~~~~~l~ 276 (326)
|++.. ..+..++.
T Consensus 309 Tl~~~v~~l~~~~~ 322 (518)
T PLN00206 309 TVSPEVEKFASSLA 322 (518)
T ss_pred eCCHHHHHHHHHhC
Confidence 99865 34555543
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=284.32 Aligned_cols=193 Identities=38% Similarity=0.597 Sum_probs=176.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
-..|++..|++.++++++++||..+|++|+.+|+.++ .|+|+++.|.||||||++|++|+++.+.+.+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~----------- 148 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLK----------- 148 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhcc-----------
Confidence 3458899999999999999999999999999999995 8999999999999999999999999998764
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
.....+..+||+||||+||.|++..++++..+. ++.+..+.||.........+..+++|+|+|||+|.+++.+.
T Consensus 149 -----~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 149 -----FKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT 223 (543)
T ss_pred -----cCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC
Confidence 334568899999999999999999999999988 89999999999988888888889999999999999999876
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. ..+.+++++|+||||++++.||.+.++.|+..+| ..+|+++||||.+..
T Consensus 224 ~~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp------------------------k~rqt~LFSAT~~~k 274 (543)
T KOG0342|consen 224 SG--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP------------------------KQRQTLLFSATQPSK 274 (543)
T ss_pred Cc--chhhccceeEeecchhhhhcccHHHHHHHHHhcc------------------------ccceeeEeeCCCcHH
Confidence 43 4467789999999999999999999999999999 789999999999844
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=287.01 Aligned_cols=248 Identities=31% Similarity=0.529 Sum_probs=212.0
Q ss_pred ccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
++.+..+|+|+.+|.+|.++..+++.|++.|+..|||+|.+.+|.++ +|+|+|..|-||||||++|.+|++...+...-
T Consensus 159 ~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~ 237 (610)
T KOG0341|consen 159 LVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237 (610)
T ss_pred EeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHh
Confidence 35567889999999999999999999999999999999999999995 99999999999999999999999998876542
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC------CcEEEEEEcCCCHHHHHHHHhcCCCE
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI------NVRVVPIVGGMSTEKQERLLKARPEL 176 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~I 176 (326)
. .+...+.+|..||+||+|+||.|+++.+..++..+ .++.+++.||.+..++....+.+.||
T Consensus 238 ~------------lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHi 305 (610)
T KOG0341|consen 238 M------------LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHI 305 (610)
T ss_pred c------------CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeE
Confidence 2 13455678999999999999999999999887533 47888999999999999999999999
Q ss_pred EEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCc
Q 020452 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256 (326)
Q Consensus 177 lV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (326)
+|+||++|.+++.. +..+++-+++|++||||+|+++||.+++..|+..++ ..+
T Consensus 306 vVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK------------------------~QR 358 (610)
T KOG0341|consen 306 VVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK------------------------GQR 358 (610)
T ss_pred EEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh------------------------hhh
Confidence 99999999999964 347888999999999999999999999999999998 789
Q ss_pred eEEEEeeeccCcH-HHHHHhhccccccccccCccccHHHHHHHhCCccCcEEEec
Q 020452 257 QTLVFSATIALSA-DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDL 310 (326)
Q Consensus 257 q~i~~SATl~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 310 (326)
|+++||||+|... .|++.-.-++...+..+.+...++.+.+..+++.+..++++
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVyl 413 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYL 413 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhH
Confidence 9999999999764 45555555666666566677777766666666655555543
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=288.43 Aligned_cols=196 Identities=31% Similarity=0.569 Sum_probs=173.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++++|++.++++|+++||..|+|+|.++||.++ +|+|++++||||||||++|++|+++.+......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~---------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP---------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccc----------
Confidence 589999999999999999999999999999999996 899999999999999999999999998754321
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
......++++|||+||++||.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.
T Consensus 77 ---~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~- 152 (423)
T PRK04837 77 ---EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH- 152 (423)
T ss_pred ---cccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-
Confidence 0111346799999999999999999999999999999999999998888888888889999999999999997653
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+++++++|+||||+|++++|...+..++..++.. ..+|.+++|||++..
T Consensus 153 --~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~----------------------~~~~~~l~SAT~~~~ 203 (423)
T PRK04837 153 --INLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA----------------------NQRLNMLFSATLSYR 203 (423)
T ss_pred --cccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc----------------------cceeEEEEeccCCHH
Confidence 678999999999999999999999999999988732 357889999999844
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=284.15 Aligned_cols=194 Identities=42% Similarity=0.611 Sum_probs=177.5
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
..+..|++|+|+..++++|+..+|..||.+|+.+||.++ .|+|++..|.||||||++|++|+++.+++.+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k--------- 135 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLK--------- 135 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcC---------
Confidence 455689999999999999999999999999999999996 9999999999999999999999999999874
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
+....|.-||||.|||+||.|+++.+.+.+++.++..+++.||.........+. +.+|+|||||||+++|..
T Consensus 136 -------Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde 207 (758)
T KOG0343|consen 136 -------WSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDE 207 (758)
T ss_pred -------CCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhh
Confidence 455678899999999999999999999999999999999999998766655554 689999999999999986
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. .++..++.+||+||||+|+++||...+..|++.|| ..+|+++||||-+..
T Consensus 208 ~~--~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP------------------------~~RQTLLFSATqt~s 259 (758)
T KOG0343|consen 208 NP--NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLP------------------------KKRQTLLFSATQTKS 259 (758)
T ss_pred cC--CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCC------------------------hhheeeeeecccchh
Confidence 53 36678899999999999999999999999999999 889999999999865
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=271.01 Aligned_cols=244 Identities=32% Similarity=0.566 Sum_probs=214.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
+=..|+++.|..+++..+.+.||..|+|+|+++||.++ .|+|+++.|..|+|||.+|++|+++.+...
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~----------- 150 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPK----------- 150 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCcc-----------
Confidence 34579999999999999999999999999999999995 999999999999999999999999987433
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
....+++|++|||+||.|+.+.++++.++.++++...+||++..+....+....|++|+||+++++++..+
T Consensus 151 ---------~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 151 ---------KNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred ---------ccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 34679999999999999999999999999999999999999999888888999999999999999999765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HH
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-AD 270 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~ 270 (326)
...++++.++|+||||.+++..|...++.++..|| +.+|++++|||+|.. ..
T Consensus 222 ---Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP------------------------~~rQillySATFP~tVk~ 274 (459)
T KOG0326|consen 222 ---VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP------------------------KERQILLYSATFPLTVKG 274 (459)
T ss_pred ---cccchhceEEEechhhhhhchhhhhHHHHHHHhCC------------------------ccceeeEEecccchhHHH
Confidence 36789999999999999999999999999999999 889999999999976 56
Q ss_pred HHHHhhcccc-----------------ccccccCccccHHHHHHHhCCccCcEEEecCC-hHHHHhhhhhh
Q 020452 271 FRKKLKHGSL-----------------KLKQSVNGLNSIETLSERAGMRANVAIVDLTN-VSVLANKLEES 323 (326)
Q Consensus 271 ~~~~l~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 323 (326)
|++.-.++++ ......++++.+..|..++.+.+.+.++...+ .+.++.||.|.
T Consensus 275 Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel 345 (459)
T KOG0326|consen 275 FMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL 345 (459)
T ss_pred HHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc
Confidence 6666433322 22334557788888999999988888888775 77788888875
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=286.73 Aligned_cols=201 Identities=38% Similarity=0.697 Sum_probs=176.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|++|+|++.++++|.++||..||++|.++||.++ +|+|++++||||||||++|++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~----------- 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH----------- 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-----------
Confidence 79999999999999999999999999999999995 899999999999999999999999988543210
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
......+++|||+||++||.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|++++....
T Consensus 70 ---~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-- 144 (456)
T PRK10590 70 ---AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-- 144 (456)
T ss_pred ---cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--
Confidence 111234689999999999999999999999989999999999999888888888889999999999999987543
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 273 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~ 273 (326)
..++++++||+||||+|++++|...+..++..++ ...|+++||||++.. .++..
T Consensus 145 -~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~------------------------~~~q~l~~SAT~~~~~~~l~~ 199 (456)
T PRK10590 145 -VKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP------------------------AKRQNLLFSATFSDDIKALAE 199 (456)
T ss_pred -cccccceEEEeecHHHHhccccHHHHHHHHHhCC------------------------ccCeEEEEeCCCcHHHHHHHH
Confidence 6789999999999999999999999999999988 678999999999864 45555
Q ss_pred Hhhc
Q 020452 274 KLKH 277 (326)
Q Consensus 274 ~l~~ 277 (326)
++..
T Consensus 200 ~~~~ 203 (456)
T PRK10590 200 KLLH 203 (456)
T ss_pred HHcC
Confidence 5543
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=271.93 Aligned_cols=194 Identities=38% Similarity=0.626 Sum_probs=169.4
Q ss_pred cccccCCCC--HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 34 DAWNELRLH--PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 34 ~~f~~l~l~--~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
..|++++.+ +++++++..+||..+||+|..+||.++ +++|+++.|+||||||++|++|+++.+++....
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~~-------- 74 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK-------- 74 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhccC--------
Confidence 368877655 999999999999999999999999995 899999999999999999999999999765422
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-CCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHHh
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~ 189 (326)
......-+|||+|||||+.||.+.+..+..+ .++.+.+++||.........+. .++.|+|||||+|.+++.
T Consensus 75 -------~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 75 -------TPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred -------CCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 1122468999999999999999999999887 6788999999988777665544 588999999999999998
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+. ....++.++.+||+||||+++++||...++.|++.|| +.+++=+||||....
T Consensus 148 ~~-~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP------------------------KQRRTGLFSATq~~~ 201 (567)
T KOG0345|consen 148 RE-AEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLP------------------------KQRRTGLFSATQTQE 201 (567)
T ss_pred ch-hhhccccccceEEecchHhHhcccHHHHHHHHHHhcc------------------------cccccccccchhhHH
Confidence 74 2335577999999999999999999999999999999 789999999999755
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=282.12 Aligned_cols=199 Identities=37% Similarity=0.632 Sum_probs=177.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|++|+|++.++++|+++||..|+++|.++|+.++ +|+|++++||||+|||++|++|+++.+....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~------------- 67 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFP------------- 67 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 69999999999999999999999999999999996 8999999999999999999999999886431
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
....+.+++||++||++|+.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.
T Consensus 68 ---~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~-- 142 (434)
T PRK11192 68 ---RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN-- 142 (434)
T ss_pred ---ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--
Confidence 112335699999999999999999999999999999999999999888888888889999999999999997653
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC--cHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFR 272 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~--~~~~~ 272 (326)
..+.++++||+||||+|++++|...+..+...++ ...|+++||||++. ..++.
T Consensus 143 -~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 143 -FDCRAVETLILDEADRMLDMGFAQDIETIAAETR------------------------WRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred -cCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCc------------------------cccEEEEEEeecCHHHHHHHH
Confidence 6688999999999999999999999999998887 66899999999974 35677
Q ss_pred HHhhc
Q 020452 273 KKLKH 277 (326)
Q Consensus 273 ~~l~~ 277 (326)
+++..
T Consensus 198 ~~~~~ 202 (434)
T PRK11192 198 ERLLN 202 (434)
T ss_pred HHHcc
Confidence 77643
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=266.24 Aligned_cols=219 Identities=43% Similarity=0.645 Sum_probs=188.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
...|++|||++++.+.++++|+..|||+|..+||.++ .|+|++.+|.||||||.+|.+|+++++..+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsed------------ 72 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSED------------ 72 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccC------------
Confidence 4579999999999999999999999999999999996 999999999999999999999999998554
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC-
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG- 191 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~- 191 (326)
..+..++|++|||+|+.|+.+.|..+++..++++.+++||++.-.+...+..++|++|+|||++.+++.+.
T Consensus 73 --------P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 73 --------PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred --------CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 34668999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHH
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 271 (326)
......+++++++|+||||++++..|-+.+..+.+.+| ..+|+++||||+.+.
T Consensus 145 ~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP------------------------~~RQtLlfSATitd~--- 197 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP------------------------KPRQTLLFSATITDT--- 197 (442)
T ss_pred ccchhhhhceeeEEecchhhhhccchhhHHhhhhccCC------------------------CccceEEEEeehhhH---
Confidence 23345689999999999999999999999999999999 779999999999743
Q ss_pred HHHhhcccccc-----ccccCccccHHHHHHHh
Q 020452 272 RKKLKHGSLKL-----KQSVNGLNSIETLSERA 299 (326)
Q Consensus 272 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~ 299 (326)
.+-+.....+. -....+...++.|.+.|
T Consensus 198 i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~y 230 (442)
T KOG0340|consen 198 IKQLFGCPITKSIAFELEVIDGVSTVETLYQGY 230 (442)
T ss_pred HHHhhcCCcccccceEEeccCCCCchhhhhhhe
Confidence 33333222221 12234556666666555
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=282.31 Aligned_cols=187 Identities=42% Similarity=0.683 Sum_probs=170.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++|+|++.++++|.++||..|+|+|+++||.++ +|+|++++||||||||++|++|+++.+...
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------- 69 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------- 69 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------------
Confidence 589999999999999999999999999999999995 899999999999999999999999987322
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
...+++||++||++|+.|+.+.++.+.... ++++..++|+.+...+...+..+++|+|+||+++.+++.++.
T Consensus 70 -------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~ 142 (460)
T PRK11776 70 -------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT 142 (460)
T ss_pred -------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC
Confidence 224589999999999999999999988754 789999999999988888888899999999999999997653
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..++++++||+||||+|++++|...+..++..++ ..+|+++||||++..
T Consensus 143 ---~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~------------------------~~~q~ll~SAT~~~~ 191 (460)
T PRK11776 143 ---LDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP------------------------ARRQTLLFSATYPEG 191 (460)
T ss_pred ---ccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC------------------------cccEEEEEEecCcHH
Confidence 6688999999999999999999999999999998 778999999999854
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=289.76 Aligned_cols=189 Identities=39% Similarity=0.697 Sum_probs=171.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
...+|++|+|++.++++|.++||..|+|+|.++||.++ .|+|++++||||||||++|++|+++.+...
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------- 71 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------- 71 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----------
Confidence 34579999999999999999999999999999999995 899999999999999999999999887432
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
..++++||++||++||.|+++.+..+.+.. ++.+..++|+.....+...+..+++|+|+||+++.+++..
T Consensus 72 ---------~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r 142 (629)
T PRK11634 72 ---------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR 142 (629)
T ss_pred ---------cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 235689999999999999999999988765 7899999999998888888888999999999999999976
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. ..++++++||+||||.|++++|...+..++..++ ..+|+++||||++..
T Consensus 143 ~~---l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp------------------------~~~q~llfSAT~p~~ 193 (629)
T PRK11634 143 GT---LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP------------------------EGHQTALFSATMPEA 193 (629)
T ss_pred CC---cchhhceEEEeccHHHHhhcccHHHHHHHHHhCC------------------------CCCeEEEEEccCChh
Confidence 53 6789999999999999999999999999999998 779999999999865
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=258.61 Aligned_cols=190 Identities=31% Similarity=0.556 Sum_probs=175.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
-+.+.+|++|||.++++++++..||++|+.+|+.|++.++ .|+|++++|.+|+|||.+|.+.+++.+...
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~~--------- 92 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDIS--------- 92 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecccc---------
Confidence 3567799999999999999999999999999999999996 999999999999999999999888876322
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
.+..+++|+.|||||+.|+.+.+..++...++++..+.||.+..+..+.+..+.|++.|||++++++++
T Consensus 93 -----------~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmik 161 (400)
T KOG0328|consen 93 -----------VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIK 161 (400)
T ss_pred -----------cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHH
Confidence 335699999999999999999999999999999999999999999888888999999999999999998
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.+. ..-..++++|+||||.|++.+|.+++..+++.|| +..|++++|||+|.
T Consensus 162 r~~---L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp------------------------~~~Qvv~~SATlp~ 212 (400)
T KOG0328|consen 162 RRS---LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP------------------------PGAQVVLVSATLPH 212 (400)
T ss_pred hcc---ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC------------------------CCceEEEEeccCcH
Confidence 765 6678899999999999999999999999999999 89999999999983
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=280.39 Aligned_cols=211 Identities=36% Similarity=0.566 Sum_probs=187.4
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
++..+.|.++.+|.+-.+.+.+...++..||..|||+|+.+||.+ ..|+|+++||+||+|||.+|++|++..++.....
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i-~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~ 142 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPII-SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPE 142 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeecccee-ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcc
Confidence 456778899999999999999999999999999999999999998 6999999999999999999999999999876432
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
.. .......+|+++|++||||||.|++.+.+++....+++++..+|+.+...+.+.+..+|+|+|+||++
T Consensus 143 ~~----------~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 143 DR----------GESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGR 212 (482)
T ss_pred cC----------cccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCch
Confidence 10 01111246899999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
|.+++..+. +.+++++++|+||||+|+| ++|+..|..|+..+.+.+. ..+|+++||
T Consensus 213 L~d~~e~g~---i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------~~~qt~mFS 269 (482)
T KOG0335|consen 213 LKDLIERGK---ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------NNRQTLLFS 269 (482)
T ss_pred hhhhhhcce---eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc--------------------cceeEEEEe
Confidence 999998664 8899999999999999999 9999999999998874321 568999999
Q ss_pred eeccCc
Q 020452 263 ATIALS 268 (326)
Q Consensus 263 ATl~~~ 268 (326)
||++..
T Consensus 270 Atfp~~ 275 (482)
T KOG0335|consen 270 ATFPKE 275 (482)
T ss_pred ccCChh
Confidence 999844
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=288.13 Aligned_cols=197 Identities=37% Similarity=0.613 Sum_probs=172.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++|+|++.++++|.++||..|||+|.++||.++ +|+|++++||||||||++|++|+++.+......
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 369999999999999999999999999999999995 899999999999999999999999988643210
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
.......+++|||+||++|+.|+++.+..+....++++..++|+.....+...+..+++|||+||++|++++....
T Consensus 78 ---~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~- 153 (572)
T PRK04537 78 ---ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK- 153 (572)
T ss_pred ---cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-
Confidence 0011235799999999999999999999999999999999999999988888888889999999999999986532
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...+..+++|||||||+|++.+|...+..++..++.. ..+|+++||||++..
T Consensus 154 -~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----------------------~~~q~ll~SATl~~~ 205 (572)
T PRK04537 154 -VVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----------------------GTRQTLLFSATLSHR 205 (572)
T ss_pred -ccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----------------------cCceEEEEeCCccHH
Confidence 3567889999999999999999999999999998721 258999999999854
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=277.15 Aligned_cols=208 Identities=32% Similarity=0.530 Sum_probs=174.2
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..|..|||++.+...|+. |++..||.+|.++||.++ +|+|++|.++||||||++|++|+++.+.....
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~---------- 204 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP---------- 204 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCc----------
Confidence 459999999999999977 999999999999999996 89999999999999999999999999976643
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC-cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
+..+..|+.+||++||||||.|+|+.++++.+.+. +-.+.+.||.........+++++.|+|+|||||.+++.+.
T Consensus 205 ----ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT 280 (708)
T KOG0348|consen 205 ----KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT 280 (708)
T ss_pred ----cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc
Confidence 23356789999999999999999999999988654 3346788998888889999999999999999999999865
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
. .+.+++++|||+||+|++++.||...+..|+..+....... |.... -.+..|.+++|||+.+..
T Consensus 281 ~--~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e---------~~~~~--lp~q~q~mLlSATLtd~V 345 (708)
T KOG0348|consen 281 K--SIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE---------CKDPK--LPHQLQNMLLSATLTDGV 345 (708)
T ss_pred c--hheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh---------ccccc--ccHHHHhHhhhhhhHHHH
Confidence 3 46788999999999999999999999999999885211100 10000 002479999999997553
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=272.68 Aligned_cols=209 Identities=35% Similarity=0.559 Sum_probs=190.5
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
.+..+|.++++|+.+++++.++.++++.-|.+|||+|.+++|..+ .|+|++-.|.||||||.+|+.|++.++...+
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~--- 289 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP--- 289 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchh---
Confidence 455678999999999999999999999999999999999999995 9999999999999999999999999987653
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
....+.+|.+||+||||+||.|++..+++|++..++++++++||.+.+++...+..++.||||||+||
T Consensus 290 ------------eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRl 357 (731)
T KOG0339|consen 290 ------------ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRL 357 (731)
T ss_pred ------------hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++.-. ..++.++.+|||||+|+|.++||..++..|...+. +.+|+++||||
T Consensus 358 id~VkmK---atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------pdrQtllFsaT 410 (731)
T KOG0339|consen 358 IDMVKMK---ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------PDRQTLLFSAT 410 (731)
T ss_pred HHHHHhh---cccceeeeEEEEechhhhhccccHHHHHHHHhhcC------------------------CcceEEEeecc
Confidence 9999644 48899999999999999999999999999999998 89999999999
Q ss_pred ccCc-HHHHHHhh
Q 020452 265 IALS-ADFRKKLK 276 (326)
Q Consensus 265 l~~~-~~~~~~l~ 276 (326)
++-. +.+++.+.
T Consensus 411 f~~kIe~lard~L 423 (731)
T KOG0339|consen 411 FKKKIEKLARDIL 423 (731)
T ss_pred chHHHHHHHHHHh
Confidence 9854 33444433
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=267.33 Aligned_cols=209 Identities=34% Similarity=0.542 Sum_probs=179.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..+|++|+|++.+++++.+.||..||-+|+.+||.++ .|+|++..|.||||||.+|++|+++.++..+.-
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t--------- 87 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT--------- 87 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhc---------
Confidence 3699999999999999999999999999999999996 899999999999999999999999999876421
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC--CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
.....++.++|++||+|||+|++..+.++.... .+++.-+.++++......++...++|+|+||++++.++..
T Consensus 88 -----~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~ 162 (569)
T KOG0346|consen 88 -----NDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAA 162 (569)
T ss_pred -----ccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhh
Confidence 144668899999999999999999999887654 3667777777777777788899999999999999999986
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHH
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 270 (326)
+. ...++.+.+||+||||.++..||.+++..+.+.|| +..|.++||||+++...
T Consensus 163 ~~--~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP------------------------r~~Q~~LmSATl~dDv~ 216 (569)
T KOG0346|consen 163 GV--LEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP------------------------RIYQCFLMSATLSDDVQ 216 (569)
T ss_pred cc--chhhhheeeEEechhhhhhhcccHHHHHHHHHhCC------------------------chhhheeehhhhhhHHH
Confidence 53 25678899999999999999999999999999999 78999999999985544
Q ss_pred HHHH-hhcccccc
Q 020452 271 FRKK-LKHGSLKL 282 (326)
Q Consensus 271 ~~~~-l~~~~~~~ 282 (326)
-.+. ..+++..+
T Consensus 217 ~LKkL~l~nPviL 229 (569)
T KOG0346|consen 217 ALKKLFLHNPVIL 229 (569)
T ss_pred HHHHHhccCCeEE
Confidence 3333 34444443
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=267.54 Aligned_cols=236 Identities=33% Similarity=0.522 Sum_probs=195.5
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+....+|.|+.+|++.+|+..+++.+.+.||..|+|+|+.+||..+ +.+|+|..+.||||||.+|++|++..+.+...-
T Consensus 235 ~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~l-Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 235 IKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGL-QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred ecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchh-ccCCeeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 4567889999999999999999999999999999999999999885 899999999999999999999999988654211
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
. .....-.+|+++|++|||+|++|+.+.-.++++.++++++.+.||...+++...+..+|+|+|+||++
T Consensus 314 ~-----------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 314 A-----------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred c-----------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchH
Confidence 0 01123458899999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCC-CcccccccccccccCCCCceEEEEe
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG-QSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
|.+.+.+.. ..++++.++|+||||+|+|+||.+++..++..+|..+.+.-. .-........+.+..+..+|+++||
T Consensus 383 Lid~Lenr~---lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mft 459 (673)
T KOG0333|consen 383 LIDSLENRY---LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFT 459 (673)
T ss_pred HHHHHHHHH---HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEe
Confidence 999997653 778999999999999999999999999999999966544210 0011112222333344669999999
Q ss_pred eeccCc-HHHHHH
Q 020452 263 ATIALS-ADFRKK 274 (326)
Q Consensus 263 ATl~~~-~~~~~~ 274 (326)
||++-. +.+++.
T Consensus 460 atm~p~verlar~ 472 (673)
T KOG0333|consen 460 ATMPPAVERLARS 472 (673)
T ss_pred cCCChHHHHHHHH
Confidence 999854 334333
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=289.79 Aligned_cols=207 Identities=37% Similarity=0.625 Sum_probs=190.2
Q ss_pred hccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHH
Q 020452 22 ELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEER 101 (326)
Q Consensus 22 ~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~ 101 (326)
-.+...++|+++.+|.+.|++..|+..++++||..|+|+|.+|||+++ +|+|+|.+|.||||||++|++|++.+....+
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr 431 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR 431 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCC
Confidence 355677899999999999999999999999999999999999999995 9999999999999999999999997765443
Q ss_pred HhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 102 EKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
+...+.||.+||++||++|+.|+++.++.|++.+++++++++|+.....+...+++++.|+||||
T Consensus 432 ---------------~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tp 496 (997)
T KOG0334|consen 432 ---------------PLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTP 496 (997)
T ss_pred ---------------ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEecc
Confidence 22345589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEE
Q 020452 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 261 (326)
+++.+++..+..+..++.++.+||+||||+|++++|..++..|+..++ +.+|+++|
T Consensus 497 GRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr------------------------pdrQtvlf 552 (997)
T KOG0334|consen 497 GRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR------------------------PDRQTVLF 552 (997)
T ss_pred chhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc------------------------hhhhhhhh
Confidence 999999977666677888888999999999999999999999999998 88999999
Q ss_pred eeeccCc
Q 020452 262 SATIALS 268 (326)
Q Consensus 262 SATl~~~ 268 (326)
|||++..
T Consensus 553 Satfpr~ 559 (997)
T KOG0334|consen 553 SATFPRS 559 (997)
T ss_pred hhhhhHH
Confidence 9999855
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=269.19 Aligned_cols=206 Identities=39% Similarity=0.584 Sum_probs=173.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
.+....|.+++|++.++++|.++||..|+++|.++|+.++ +|+|+++.+|||||||++|++|+++.+......
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~------ 155 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP------ 155 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc------
Confidence 3445679999999999999999999999999999999985 899999999999999999999999998654211
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHH
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELM 188 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll 188 (326)
.....+.+++|||+||++|+.|+++.++.+.+..++.+..++|+.....+.+.+. ..++|+|+||++|++++
T Consensus 156 -------~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 156 -------KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFN 228 (475)
T ss_pred -------cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 1111235799999999999999999999999988999999999988777666554 46899999999999988
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+. ..++++++|||||+|++++++|...+..++..++.. ..+|++++|||++..
T Consensus 229 ~~~~---~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~----------------------~~~q~i~~SAT~~~~ 283 (475)
T PRK01297 229 QRGE---VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK----------------------EERQTLLFSATFTDD 283 (475)
T ss_pred HcCC---cccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----------------------CCceEEEEEeecCHH
Confidence 6543 678999999999999999999999999999888621 357999999999743
Q ss_pred -HHHHHH
Q 020452 269 -ADFRKK 274 (326)
Q Consensus 269 -~~~~~~ 274 (326)
.++.+.
T Consensus 284 ~~~~~~~ 290 (475)
T PRK01297 284 VMNLAKQ 290 (475)
T ss_pred HHHHHHH
Confidence 334333
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=260.85 Aligned_cols=190 Identities=34% Similarity=0.568 Sum_probs=169.6
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+..++|+++++++.+.++|.++||..|+|+|.++|+.++ +|+|++++||||||||++|++|+++.+...
T Consensus 25 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---------- 93 (401)
T PTZ00424 25 EIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDYD---------- 93 (401)
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcCC----------
Confidence 356899999999999999999999999999999999995 899999999999999999999999876311
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
..+.++||++|+++|+.|+.+.+..++...++.+..+.|+.........+..+++|+|+||+++.+++..
T Consensus 94 ----------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~ 163 (401)
T PTZ00424 94 ----------LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK 163 (401)
T ss_pred ----------CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh
Confidence 2356899999999999999999999988888888889999888777777777899999999999999876
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+. ..+++++++|+||+|++++.++...+..++..++ ...|++++|||+++.
T Consensus 164 ~~---~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~ 214 (401)
T PTZ00424 164 RH---LRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP------------------------PDVQVALFSATMPNE 214 (401)
T ss_pred CC---cccccccEEEEecHHHHHhcchHHHHHHHHhhCC------------------------CCcEEEEEEecCCHH
Confidence 53 5688999999999999999999888999998887 678999999999854
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=251.81 Aligned_cols=206 Identities=35% Similarity=0.654 Sum_probs=185.4
Q ss_pred cCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHH
Q 020452 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~ 92 (326)
.++++..+.+.+-+..+.+-.++|++|+|.+.++++++..||.+|+.+|+.||.+++ .|.|+++++++|+|||.+|.++
T Consensus 5 ~~g~~~~e~~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~ 83 (397)
T KOG0327|consen 5 DNGPDGMEPEGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLIS 83 (397)
T ss_pred cCCCcccCccccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHH
Confidence 567777777888888999999999999999999999999999999999999999885 8999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH-HHHh
Q 020452 93 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE-RLLK 171 (326)
Q Consensus 93 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~-~~~~ 171 (326)
+++.+-... ...++++++|||+|+.|+......++...+.++..+.|+.....+. ....
T Consensus 84 iLq~iD~~~--------------------ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~ 143 (397)
T KOG0327|consen 84 ILQQIDMSV--------------------KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLK 143 (397)
T ss_pred HHhhcCcch--------------------HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhc
Confidence 999873322 2348999999999999999999999999999999999998877444 4444
Q ss_pred cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCccccccccccccc
Q 020452 172 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251 (326)
Q Consensus 172 ~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (326)
..++|+|+||+++.++++.+. ...+.++++|+||+|.|+..+|.+.+..++..+|
T Consensus 144 ~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp---------------------- 198 (397)
T KOG0327|consen 144 DKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP---------------------- 198 (397)
T ss_pred cCceeecCCchhHHHhhcccc---ccccceeEEeecchHhhhccchHHHHHHHHHHcC----------------------
Confidence 568999999999999997663 6678899999999999999999999999999999
Q ss_pred CCCCceEEEEeeecc
Q 020452 252 QRKKRQTLVFSATIA 266 (326)
Q Consensus 252 ~~~~~q~i~~SATl~ 266 (326)
...|++++|||+|
T Consensus 199 --~~vQv~l~SAT~p 211 (397)
T KOG0327|consen 199 --SDVQVVLLSATMP 211 (397)
T ss_pred --cchhheeecccCc
Confidence 7889999999998
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=252.70 Aligned_cols=198 Identities=35% Similarity=0.550 Sum_probs=177.0
Q ss_pred ccccccccccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 020452 28 EISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 106 (326)
Q Consensus 28 ~~~~~~~~f~~-l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~ 106 (326)
++|.|..+|++ |.-.+++++.+++.||.+|+|+|.++||.++ +|+|++.+|.||+|||++|++|-+.++.....
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---- 287 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---- 287 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccch----
Confidence 48999999986 5888999999999999999999999999995 99999999999999999999998887754322
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
+.....++.+|+++||++|+.|+.-.+.++.- -+.+.++++|+.+...+.+.++.+.+|+++||++|.+
T Consensus 288 ----------~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlnd 356 (629)
T KOG0336|consen 288 ----------RREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLND 356 (629)
T ss_pred ----------hhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhh
Confidence 22245678999999999999999988877643 4788899999999999999999999999999999999
Q ss_pred HHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 187 ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+...+ ..++.++.+||+||||+|++++|..++.+|+--++ +.+|+++.|||+|
T Consensus 357 L~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------PDRqtvmTSATWP 409 (629)
T KOG0336|consen 357 LQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------PDRQTVMTSATWP 409 (629)
T ss_pred hhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC------------------------CcceeeeecccCc
Confidence 98665 48899999999999999999999999999998887 8999999999999
Q ss_pred Cc
Q 020452 267 LS 268 (326)
Q Consensus 267 ~~ 268 (326)
..
T Consensus 410 ~~ 411 (629)
T KOG0336|consen 410 EG 411 (629)
T ss_pred hH
Confidence 54
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=231.44 Aligned_cols=185 Identities=49% Similarity=0.816 Sum_probs=166.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 020452 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115 (326)
Q Consensus 36 f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~ 115 (326)
|+++++++.+.+.|.++|+..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 8899999999999999999999999999999995 7999999999999999999999999886541
Q ss_pred hhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCccc
Q 020452 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 116 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
...+++++|++|+++|+.|+.+.++.+....++.+..++|+.........+..+++|+|+||+++.+++.+..
T Consensus 66 ----~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--- 138 (203)
T cd00268 66 ----KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--- 138 (203)
T ss_pred ----ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---
Confidence 1236799999999999999999999998888899999999998877777676789999999999999887654
Q ss_pred ccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..+.+++++|+||+|.+.+.++...+..++..++ ..+|++++|||++
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~------------------------~~~~~~~~SAT~~ 185 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP------------------------KDRQTLLFSATMP 185 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCC------------------------cccEEEEEeccCC
Confidence 6678899999999999998889999999999887 6799999999998
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=246.40 Aligned_cols=187 Identities=41% Similarity=0.699 Sum_probs=173.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
-.|..|||+..+.+++.+-||+.|+|+|++.+|.++ .++|++..+.||||||.||++|+++++....
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s------------ 87 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------------ 87 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhcc------------
Confidence 479999999999999999999999999999999996 9999999999999999999999999985432
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
..+.+++++.||++|+.|..+..+.+++..++++.+++|+...+++...+..++|||++||+++..+...-.
T Consensus 88 -------~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~- 159 (529)
T KOG0337|consen 88 -------QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT- 159 (529)
T ss_pred -------ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee-
Confidence 457899999999999999999999999999999999999999999999999999999999999987765432
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..++.+.+|||||+|.+.++||.+.+..++.+++ ..+|+++||||+|.
T Consensus 160 --l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~------------------------~~~QTllfSatlp~ 207 (529)
T KOG0337|consen 160 --LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP------------------------ESRQTLLFSATLPR 207 (529)
T ss_pred --ccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC------------------------CcceEEEEeccCch
Confidence 6789999999999999999999999999999999 67899999999983
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=270.97 Aligned_cols=192 Identities=24% Similarity=0.299 Sum_probs=165.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
.|++++|++.+++++++.||..|+|+|.++++..+.+|+|++++||||||||++|.+|++..+..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------------
Confidence 58999999999999999999999999999999855789999999999999999999999988731
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.++||++|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..+++++.
T Consensus 67 --------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~-- 132 (737)
T PRK02362 67 --------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA-- 132 (737)
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh--
Confidence 34899999999999999999997653 58899999998764332 23468999999999998887643
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+++++++|+||+|.+.+.+++..++.++.++.... ...|+|++|||++|..++.+|
T Consensus 133 -~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~---------------------~~~qii~lSATl~n~~~la~w 190 (737)
T PRK02362 133 -PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN---------------------PDLQVVALSATIGNADELADW 190 (737)
T ss_pred -hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC---------------------CCCcEEEEcccCCCHHHHHHH
Confidence 4578899999999999998889999998887775321 458999999999999999999
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
+..
T Consensus 191 l~~ 193 (737)
T PRK02362 191 LDA 193 (737)
T ss_pred hCC
Confidence 974
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=268.28 Aligned_cols=190 Identities=22% Similarity=0.319 Sum_probs=167.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|+++++++.+.+.+++.||..|+|+|.++++..+.+|+|+++++|||||||++|.+|++..+...
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------------- 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------------- 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------------
Confidence 688999999999999999999999999999997556999999999999999999999999887532
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.++||++|+++|+.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++++..
T Consensus 68 --------~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~-- 133 (720)
T PRK00254 68 --------GGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS-- 133 (720)
T ss_pred --------CCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc--
Confidence 3489999999999999999998864 468999999998765332 23568999999999988887543
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+++++++|+||+|.+.+.+++..++.++..++ ...|+|++|||++|..++.+|
T Consensus 134 -~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~------------------------~~~qiI~lSATl~n~~~la~w 188 (720)
T PRK00254 134 -SWIKDVKLVVADEIHLIGSYDRGATLEMILTHML------------------------GRAQILGLSATVGNAEELAEW 188 (720)
T ss_pred -hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC------------------------cCCcEEEEEccCCCHHHHHHH
Confidence 4578999999999999998889999999999887 568999999999999999999
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
+..
T Consensus 189 l~~ 191 (720)
T PRK00254 189 LNA 191 (720)
T ss_pred hCC
Confidence 975
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-31 Score=266.11 Aligned_cols=206 Identities=22% Similarity=0.265 Sum_probs=163.3
Q ss_pred cccccccccC--CCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 30 STEFDAWNEL--RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 30 ~~~~~~f~~l--~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
|.....|..+ .+++.+.++|+++||+.|+++|.++|+.+ .+|+|+++++|||||||++|++|+++.+..+
T Consensus 8 p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~i-l~G~nvvv~apTGSGKTla~~LPiL~~l~~~------- 79 (742)
T TIGR03817 8 PARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELA-HAGRHVVVATGTASGKSLAYQLPVLSALADD------- 79 (742)
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHH-HCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------
Confidence 3333344444 38999999999999999999999999999 4999999999999999999999999988542
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
.+.++|||+||++|+.|+.+.++.+. ..++++..+.|+..... ...+..+++|+|+||+++...
T Consensus 80 --------------~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~ 143 (742)
T TIGR03817 80 --------------PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRG 143 (742)
T ss_pred --------------CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHh
Confidence 24689999999999999999999987 45788888888877544 455667799999999998753
Q ss_pred H-hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 188 M-SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 188 l-~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+ .....+...++++++||+||||.|.+ .|+..+..++++++.... .....+|++++|||++
T Consensus 144 ~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~-----------------~~g~~~q~i~~SATi~ 205 (742)
T TIGR03817 144 ILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCA-----------------RYGASPVFVLASATTA 205 (742)
T ss_pred hccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHH-----------------hcCCCCEEEEEecCCC
Confidence 3 22223334588999999999999975 588887777776642110 0014589999999999
Q ss_pred CcHHHHHHhhc
Q 020452 267 LSADFRKKLKH 277 (326)
Q Consensus 267 ~~~~~~~~l~~ 277 (326)
|+.++.+++..
T Consensus 206 n~~~~~~~l~g 216 (742)
T TIGR03817 206 DPAAAASRLIG 216 (742)
T ss_pred CHHHHHHHHcC
Confidence 99988888654
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=249.04 Aligned_cols=191 Identities=19% Similarity=0.281 Sum_probs=161.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
.|++++|++.+++.+++.||. ++++|.++++.+ .+|+|+++++|||||||+++.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 588999999999999999995 999999999998 689999999999999999999999887632
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.++||++|+++||.|+++.++++. ..+.++...+|+...... ....++|+|+||+++..++.+..
T Consensus 65 --------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-- 130 (674)
T PRK01172 65 --------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-- 130 (674)
T ss_pred --------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh--
Confidence 2379999999999999999999864 468899889888754322 23468999999999988886542
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+.+++++|+||+|.+.+.+++..++.++..++... ...|+|++|||++|..++.+|
T Consensus 131 -~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~---------------------~~~riI~lSATl~n~~~la~w 188 (674)
T PRK01172 131 -YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN---------------------PDARILALSATVSNANELAQW 188 (674)
T ss_pred -hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC---------------------cCCcEEEEeCccCCHHHHHHH
Confidence 5578999999999999998888888888877654211 468999999999999999999
Q ss_pred hhcc
Q 020452 275 LKHG 278 (326)
Q Consensus 275 l~~~ 278 (326)
+...
T Consensus 189 l~~~ 192 (674)
T PRK01172 189 LNAS 192 (674)
T ss_pred hCCC
Confidence 8643
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-29 Score=246.19 Aligned_cols=200 Identities=27% Similarity=0.349 Sum_probs=177.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
|++.+.+.++.. |..|||.|.+|||.+ .+|+|+++.||||||||.++.+|++..+.+.. ....
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i-~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---------------~~~~ 70 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEI-HSGENVLIIAPTGSGKTEAAFLPVINELLSLG---------------KGKL 70 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHH-hCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---------------CCCC
Confidence 789999999988 999999999999999 59999999999999999999999999997652 1123
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
..+..+|||+|-|+|.+++.+.++..+..+|+.+...+|+++..+..+...+.+||+|+||+.|.-++... .....|.+
T Consensus 71 ~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~ 149 (814)
T COG1201 71 EDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRD 149 (814)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcC
Confidence 45789999999999999999999999999999999999999999999999999999999999998888654 44466899
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 279 (326)
++++|+||+|.+.+..++.++..-+++|.... ...|.|++|||+.++++.++||....
T Consensus 150 vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~---------------------~~~qRIGLSATV~~~~~varfL~g~~ 207 (814)
T COG1201 150 VRYVIVDEIHALAESKRGVQLALSLERLRELA---------------------GDFQRIGLSATVGPPEEVAKFLVGFG 207 (814)
T ss_pred CcEEEeehhhhhhccccchhhhhhHHHHHhhC---------------------cccEEEeehhccCCHHHHHHHhcCCC
Confidence 99999999999998888888887787776331 25899999999999999999998654
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=211.07 Aligned_cols=198 Identities=35% Similarity=0.620 Sum_probs=176.4
Q ss_pred ccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
...+.+++..-+.|.++-|.|++++++-..||..|+.+|.++||..+ -|.|++.+|.+|-|||.+|.+.-++.+-
T Consensus 31 d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqie---- 105 (387)
T KOG0329|consen 31 DKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIE---- 105 (387)
T ss_pred cccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcC----
Confidence 34455667777789999999999999999999999999999999986 7999999999999999999999888762
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
...+...++++|.||+||.|+......+.++. ++++.+++||.......+.+++-+||+|+||
T Consensus 106 ----------------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTP 169 (387)
T KOG0329|consen 106 ----------------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTP 169 (387)
T ss_pred ----------------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCc
Confidence 22446789999999999999999999988875 6899999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEE
Q 020452 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 260 (326)
++++.+.++.. .++++++++|+||||.|+++ ..+..++.|.+..| ...|+++
T Consensus 170 GrilALvr~k~---l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp------------------------~~KQvmm 222 (387)
T KOG0329|consen 170 GRILALVRNRS---LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMM 222 (387)
T ss_pred HHHHHHHHhcc---CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc------------------------ccceeee
Confidence 99999998765 88999999999999999854 56788999999888 7899999
Q ss_pred EeeeccCc
Q 020452 261 FSATIALS 268 (326)
Q Consensus 261 ~SATl~~~ 268 (326)
||||+++.
T Consensus 223 fsatlske 230 (387)
T KOG0329|consen 223 FSATLSKE 230 (387)
T ss_pred eeeecchh
Confidence 99999854
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=252.34 Aligned_cols=200 Identities=28% Similarity=0.369 Sum_probs=160.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
+++.+.+.+++ +|..|+|+|.++|+.+ .+|+|++++||||||||++|++|+++.+...... ...
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~i-l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--------------~~~ 81 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLI-HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--------------GEL 81 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHH-HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--------------cCC
Confidence 66777777666 7999999999999998 5899999999999999999999999988653210 111
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHH-------H----cCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEV-------A----KGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~-------~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..++++||++|+++|+.|+++.+... + ... ++++...+|+.......+.+.+.++|+|+||++|..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 34679999999999999999876532 2 122 67889999999988887778888999999999998887
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.+. .....+.++++||+||+|.+.+..++..+...+.++.... ....|+|++|||+++.
T Consensus 162 ~~~-~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--------------------~~~~q~IglSATl~~~ 220 (876)
T PRK13767 162 NSP-KFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--------------------GGEFVRIGLSATIEPL 220 (876)
T ss_pred cCh-hHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--------------------CCCCeEEEEecccCCH
Confidence 543 2223578999999999999998888877777776665211 1468999999999999
Q ss_pred HHHHHHhhc
Q 020452 269 ADFRKKLKH 277 (326)
Q Consensus 269 ~~~~~~l~~ 277 (326)
+++.+|+..
T Consensus 221 ~~va~~L~~ 229 (876)
T PRK13767 221 EEVAKFLVG 229 (876)
T ss_pred HHHHHHhcC
Confidence 999999864
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=236.26 Aligned_cols=190 Identities=34% Similarity=0.547 Sum_probs=169.5
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 28 ~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
..+.....|+++.|...++.+|++.+|..|+++|..|||.++ .+.|+|+++.+|+|||++|.+.+++.+..
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl~~-------- 89 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESLDS-------- 89 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhcCc--------
Confidence 345666799999999999999999999999999999999995 89999999999999999998888887632
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
....++++|++|||+++-|+.+.+..++.. .|+++.++.||+........++ .++|+||||||+..
T Consensus 90 ------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~q 156 (980)
T KOG4284|consen 90 ------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQ 156 (980)
T ss_pred ------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHH
Confidence 244679999999999999999999999875 4899999999998776655555 58999999999999
Q ss_pred HHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 187 LMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 187 ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
++..+. .+...++++|+||||.+++ ..|...+..|+..|| ..+|+++||||.
T Consensus 157 L~el~~---~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP------------------------~~rQv~a~SATY 209 (980)
T KOG4284|consen 157 LVELGA---MNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP------------------------QIRQVAAFSATY 209 (980)
T ss_pred HHHhcC---CCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc------------------------hhheeeEEeccC
Confidence 998664 7889999999999999997 678999999999999 789999999999
Q ss_pred c
Q 020452 266 A 266 (326)
Q Consensus 266 ~ 266 (326)
+
T Consensus 210 p 210 (980)
T KOG4284|consen 210 P 210 (980)
T ss_pred c
Confidence 8
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=200.58 Aligned_cols=162 Identities=40% Similarity=0.585 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
||+|.++++.++ +|+++++.+|||+|||++|+++++..+.+. ...+++|++|+++|+.
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------------------~~~~~lii~P~~~l~~ 58 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG---------------------KDARVLIIVPTRALAE 58 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------------------SSSEEEEEESSHHHHH
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC---------------------CCceEEEEeecccccc
Confidence 699999999996 899999999999999999999999887542 1238999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHH-HHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~ 216 (326)
|+.+.+..++...++++..++|+.... .....+..+++|+|+||++|.+++.... .++.+++++|+||+|.+.+..
T Consensus 59 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~ 135 (169)
T PF00270_consen 59 QQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDET 135 (169)
T ss_dssp HHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCccccccccc
Confidence 999999999988788999999998865 4445555679999999999999998743 356669999999999999888
Q ss_pred CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 217 ~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+...+..++..+... .+.|++++|||++
T Consensus 136 ~~~~~~~i~~~~~~~----------------------~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 136 FRAMLKSILRRLKRF----------------------KNIQIILLSATLP 163 (169)
T ss_dssp HHHHHHHHHHHSHTT----------------------TTSEEEEEESSST
T ss_pred HHHHHHHHHHHhcCC----------------------CCCcEEEEeeCCC
Confidence 888899998887521 3589999999997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=223.31 Aligned_cols=178 Identities=33% Similarity=0.537 Sum_probs=150.3
Q ss_pred cccccccCCCCHHHHHH----------HHHCCCCCChHHHHHHHHHHHhc--------CCcEEEEcCCCchHHHHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKS----------IYRLGFKEPTPIQKACIPAAAHQ--------GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~----------l~~~g~~~p~~~Q~~~i~~~l~~--------g~dvlv~apTGsGKT~~~~l~i 93 (326)
....|+.+++++.+... +.++++++..|+|..++|.++.. ++|+.+.||||||||++|.+||
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 34457788877765544 89999999999999999988532 5799999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhc-
Q 020452 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA- 172 (326)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~- 172 (326)
++.+.... -...|||||+||++|+.|+++.+..+....|+.|+.+.|..+.....+.+..
T Consensus 205 VQ~L~~R~-------------------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~ 265 (620)
T KOG0350|consen 205 VQLLSSRP-------------------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASD 265 (620)
T ss_pred HHHHccCC-------------------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcC
Confidence 99885431 2347999999999999999999999999999999999999888777666654
Q ss_pred CC----CEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 173 RP----ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 173 ~~----~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
.+ ||+|+|||||.+++.+. ..+++++++++||||||+|++..|...+..++..+..
T Consensus 266 ~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~ 325 (620)
T KOG0350|consen 266 PPECRIDILVATPGRLVDHLNNT--KSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKT 325 (620)
T ss_pred CCccccceEEcCchHHHHhccCC--CCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCC
Confidence 33 89999999999999863 3478999999999999999998888877777776653
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=216.94 Aligned_cols=197 Identities=32% Similarity=0.534 Sum_probs=163.8
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
--...+|++|+|.|+++++++.|+|.+|+.+|+.++|.++.. .+|+|.++.+|+|||.+|.+.++.++..
T Consensus 86 lyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~--------- 156 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP--------- 156 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc---------
Confidence 334568999999999999999999999999999999998754 3699999999999999999999998732
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
....|+++.|+|||+||.|+.+.+.+.++..+++......+....... .-..+|+|+||+.+.+++
T Consensus 157 -----------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm 222 (477)
T KOG0332|consen 157 -----------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLM 222 (477)
T ss_pred -----------cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---cchhheeeCCCccHHHHH
Confidence 244679999999999999999999999998888888777665221111 113589999999999999
Q ss_pred hcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.. .+...+..++.+|+||||.|++ .||.++-..|...+| ...|+++||||+..
T Consensus 223 ~k--lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP------------------------~~~QllLFSATf~e 276 (477)
T KOG0332|consen 223 LK--LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP------------------------RNQQLLLFSATFVE 276 (477)
T ss_pred HH--HHhhChhhceEEEecchhhhhhcccccccchhhhhhcC------------------------CcceEEeeechhHH
Confidence 74 2457788999999999999995 578999999999998 67999999999974
Q ss_pred c-HHHHHHh
Q 020452 268 S-ADFRKKL 275 (326)
Q Consensus 268 ~-~~~~~~l 275 (326)
. ..|+..+
T Consensus 277 ~V~~Fa~ki 285 (477)
T KOG0332|consen 277 KVAAFALKI 285 (477)
T ss_pred HHHHHHHHh
Confidence 4 3444443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=235.66 Aligned_cols=193 Identities=22% Similarity=0.260 Sum_probs=164.2
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020452 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117 (326)
Q Consensus 38 ~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
.+.+++.+.+.++..|+..+.+-|+.++...+.+++|+++++|||||||+.+++.+++.+.+.
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------------- 75 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------------- 75 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----------------
Confidence 344788899999999998898988888877766789999999999999999999999988543
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 118 ~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
+.++||+||+++||.|.++.++ .+..+|++|...+|+...... .-.+++|+|+||+++-.++++.. ..
T Consensus 76 -----~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~---~~ 143 (766)
T COG1204 76 -----GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRP---SW 143 (766)
T ss_pred -----CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCc---ch
Confidence 4589999999999999999999 455679999999999876542 23468999999999888887764 36
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
+..+++||+||+|.+.+..++..++.++.+++..+ ...|++++|||+||..++++||..
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~---------------------~~~rivgLSATlpN~~evA~wL~a 202 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN---------------------ELIRIVGLSATLPNAEEVADWLNA 202 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhC---------------------cceEEEEEeeecCCHHHHHHHhCC
Confidence 78899999999999988878999999998887432 348999999999999999999986
Q ss_pred ccc
Q 020452 278 GSL 280 (326)
Q Consensus 278 ~~~ 280 (326)
...
T Consensus 203 ~~~ 205 (766)
T COG1204 203 KLV 205 (766)
T ss_pred ccc
Confidence 533
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-27 Score=232.23 Aligned_cols=192 Identities=22% Similarity=0.338 Sum_probs=159.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
++|..++.+|..++|.+++++.|++||||||+|||-.|++.|++.+....+ .....++..++|||+|
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~-------------~~~i~k~~fKiVYIaP 172 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE-------------QGDIAKDDFKIVYIAP 172 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc-------------ccccccCCceEEEEec
Confidence 678899999999999999999999999999999999999999998865221 1334456789999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-cccccCCCeeEEeecchh
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-~~~~~l~~l~~lViDEah 210 (326)
+++||.++++.|.+-+..+|++|..++|++...... -..++|||+||++ |+.+.+.. .....+..+++||+||+|
T Consensus 173 mKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEVH 248 (1230)
T KOG0952|consen 173 MKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEVH 248 (1230)
T ss_pred hHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeeeh
Confidence 999999999999999888999999999998876554 2368999999999 67765432 223446789999999999
Q ss_pred HhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcc
Q 020452 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 278 (326)
Q Consensus 211 ~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 278 (326)
.+- ..++..++.|+.++.+..+.+. ...++|++|||+||-+|.++||+.+
T Consensus 249 lLh-d~RGpvlEtiVaRtlr~vessq-----------------s~IRivgLSATlPN~eDvA~fL~vn 298 (1230)
T KOG0952|consen 249 LLH-DDRGPVLETIVARTLRLVESSQ-----------------SMIRIVGLSATLPNYEDVARFLRVN 298 (1230)
T ss_pred hhc-CcccchHHHHHHHHHHHHHhhh-----------------hheEEEEeeccCCCHHHHHHHhcCC
Confidence 765 4589999999988774333221 5689999999999999999999864
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=232.86 Aligned_cols=202 Identities=23% Similarity=0.354 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
....+..++.+.|+..|++||.+|+..+ .+|+|++|.++||||||.+|++||++.+++...
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~-~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------------------ 115 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLI-REGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------------------ 115 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHH-HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------------------
Confidence 4455688889999999999999999998 699999999999999999999999999987642
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC--cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH-HHhcCCccccc
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVE 197 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-ll~~~~~~~~~ 197 (326)
-++|+|.||++|++++.+.++++....+ +.+...+|++..........+.++||++||.+|.. ++.+...+...
T Consensus 116 ---a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~ 192 (851)
T COG1205 116 ---ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWL 192 (851)
T ss_pred ---ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHH
Confidence 2899999999999999999999999887 88888999999888888888999999999999988 45555566777
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
++++++||+||+|..- ..|+.++..++++|...... .....|+|+.|||+.|+.+++..+..
T Consensus 193 ~~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~~~~~-----------------~~~~~q~i~~SAT~~np~e~~~~l~~ 254 (851)
T COG1205 193 LRNLKYLVVDELHTYR-GVQGSEVALLLRRLLRRLRR-----------------YGSPLQIICTSATLANPGEFAEELFG 254 (851)
T ss_pred HhcCcEEEEecceecc-ccchhHHHHHHHHHHHHHhc-----------------cCCCceEEEEeccccChHHHHHHhcC
Confidence 8999999999999774 45677777666666522111 01468999999999999999988765
Q ss_pred ccccc
Q 020452 278 GSLKL 282 (326)
Q Consensus 278 ~~~~~ 282 (326)
..+..
T Consensus 255 ~~f~~ 259 (851)
T COG1205 255 RDFEV 259 (851)
T ss_pred Cccee
Confidence 44443
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-26 Score=212.27 Aligned_cols=213 Identities=31% Similarity=0.476 Sum_probs=171.9
Q ss_pred ccCccccccccccccc----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNE----LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~----l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.+.+..+|.++.+|.+ ..+++.+++.+...||..|+|+|.+++|.++ .++|++.|+|||+|||++|.+|+++++.
T Consensus 121 ~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 121 NVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred eccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHH
Confidence 3455667899999998 5799999999999999999999999999995 8999999999999999999999999986
Q ss_pred HHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH--cCCCcEEEEEEcCCCHHHH-HHHHhcCCC
Q 020452 99 EEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA--KGINVRVVPIVGGMSTEKQ-ERLLKARPE 175 (326)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~--~~~~~~v~~~~g~~~~~~~-~~~~~~~~~ 175 (326)
... ......+.+++|+.||++|+.|+++.+.++. ...+++...+......... .......++
T Consensus 200 ~~~---------------~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~d 264 (593)
T KOG0344|consen 200 DLS---------------QEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYD 264 (593)
T ss_pred Hhh---------------cccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHH
Confidence 543 1233567899999999999999999999998 5555555554444332222 222334579
Q ss_pred EEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCC
Q 020452 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254 (326)
Q Consensus 176 IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (326)
|+|+||-++..++..+ ....++..+.++|+||+|++++. .|..++..|+..+.+ +
T Consensus 265 ili~TP~ri~~~~~~~-~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-----------------------~ 320 (593)
T KOG0344|consen 265 ILISTPMRIVGLLGLG-KLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-----------------------P 320 (593)
T ss_pred HHhcCHHHHHHHhcCC-CccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-----------------------c
Confidence 9999999999999765 22367899999999999999988 889999999988763 5
Q ss_pred CceEEEEeeeccCcHHHHHHhhc
Q 020452 255 KRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 255 ~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
...+-+||||++ ...-+|...
T Consensus 321 ~i~~a~FSat~~--~~VEE~~~~ 341 (593)
T KOG0344|consen 321 DIRVALFSATIS--VYVEEWAEL 341 (593)
T ss_pred chhhhhhhcccc--HHHHHHHHH
Confidence 688899999998 444566543
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=215.66 Aligned_cols=186 Identities=24% Similarity=0.320 Sum_probs=138.8
Q ss_pred ccccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 34 DAWNE--LRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 34 ~~f~~--l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
..|.. ++....+...++. +||..++|+|.++|+.++ .|+|+++++|||+|||++|++|++..
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~-------------- 499 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC-------------- 499 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc--------------
Confidence 35774 5556666666665 899999999999999995 89999999999999999999999853
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh------cCCCEEEeCcHHH
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK------ARPELVVGTPGRL 184 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~IlV~Tp~~l 184 (326)
+..+|||+|+++|+.++...+.. .+++...+.++.....+...+. ..++||++||++|
T Consensus 500 ------------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL 563 (1195)
T PLN03137 500 ------------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKV 563 (1195)
T ss_pred ------------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHh
Confidence 23799999999999866655554 3789999999988776655443 4689999999998
Q ss_pred HH---HHhcCCcccccCCCeeEEeecchhHhhhCC--CHHHHHH---HHHhCCCCCCCCCCCcccccccccccccCCCCc
Q 020452 185 WE---LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQS---IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256 (326)
Q Consensus 185 ~~---ll~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~i~~---il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (326)
.. ++... ........+.+|||||||++++|| |...+.. +...+ +.+
T Consensus 564 ~~~d~ll~~L-~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-------------------------p~v 617 (1195)
T PLN03137 564 AKSDSLLRHL-ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF-------------------------PNI 617 (1195)
T ss_pred hcchHHHHHH-HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC-------------------------CCC
Confidence 52 22211 111223458999999999999987 5555544 33333 357
Q ss_pred eEEEEeeeccCc--HHHHHHhh
Q 020452 257 QTLVFSATIALS--ADFRKKLK 276 (326)
Q Consensus 257 q~i~~SATl~~~--~~~~~~l~ 276 (326)
|++++|||++.. .++.+.|.
T Consensus 618 PilALTATAT~~V~eDI~~~L~ 639 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALG 639 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcC
Confidence 899999999844 45666654
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=218.84 Aligned_cols=190 Identities=23% Similarity=0.258 Sum_probs=133.9
Q ss_pred HHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 48 SIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 48 ~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.+++ .|+ .|+++|+.++|.++ .|+|++++||||+|||. |.++++..+.. .+.++
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------------------~g~~a 126 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTT-FGLVMSLYLAK----------------------KGKKS 126 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------------------cCCeE
Confidence 3433 578 89999999999995 89999999999999995 55555443311 25689
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH-----HHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST-----EKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~-----~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+||+||++|+.|+++.++.++...++.+..++|+... ......+. ..++|+|+||++|.+.+.. ....+
T Consensus 127 lIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~ 201 (1176)
T PRK09401 127 YIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKK 201 (1176)
T ss_pred EEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccc
Confidence 9999999999999999999999888888888776542 22223333 4689999999999988752 44566
Q ss_pred eeEEeecchhHhhh-----------CCCH-HHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 201 LSFFVLDEADRMIE-----------NGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 201 l~~lViDEah~l~~-----------~~~~-~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
++++|+||||+|++ .||. +.+..++..++..+...+...........+........|++++|||++.
T Consensus 202 ~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 202 FDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred cCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 99999999999996 5674 6788888888731110000000000000000001126899999999974
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=212.41 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=129.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE-EE
Q 020452 52 LGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL-II 129 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-il 129 (326)
+||. |+|||.++++.++ .|+ ++++++|||||||.++.++++... . ....++.| ++
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~-~--------------------~~~~~~rLv~~ 68 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE-I--------------------GAKVPRRLVYV 68 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc-c--------------------cccccceEEEe
Confidence 6996 9999999999996 777 678889999999997765544221 0 01233445 57
Q ss_pred eCcHHHHHHHHHHHHHHHcCC-----------------------CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 130 TPTRELALQVTDHLKEVAKGI-----------------------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
+|||+|+.|+++.++.+.+.+ ++++..++||.....+...+..+++|||||++.
T Consensus 69 vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~--- 145 (844)
T TIGR02621 69 VNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDM--- 145 (844)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHH---
Confidence 799999999999999998754 488999999999999999999999999999644
Q ss_pred HHhcCCc-------------ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCC
Q 020452 187 LMSGGEK-------------HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 253 (326)
Q Consensus 187 ll~~~~~-------------~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (326)
+.++.. ....++++++||+|||| ++++|...+..|++.+..... .
T Consensus 146 -i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~-------------------~ 203 (844)
T TIGR02621 146 -IGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD-------------------F 203 (844)
T ss_pred -HcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-------------------c
Confidence 433221 01136889999999999 678999999999987521000 0
Q ss_pred CCceEEEEeeeccCc
Q 020452 254 KKRQTLVFSATIALS 268 (326)
Q Consensus 254 ~~~q~i~~SATl~~~ 268 (326)
.++|+++||||++..
T Consensus 204 rprQtLLFSAT~p~e 218 (844)
T TIGR02621 204 LPLRVVELTATSRTD 218 (844)
T ss_pred ccceEEEEecCCCcc
Confidence 237999999999853
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=202.55 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=127.9
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
+.+||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++.. +..+||+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~~--------------------------~~~~lVi 57 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALCS--------------------------DGITLVI 57 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHHc--------------------------CCcEEEE
Confidence 34899999999999999996 89999999999999999999998742 2269999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH----HhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
+|+++|+.|+.+.+..+ ++.+..+.++......... ....++|+++||+++....... .......+++++|
T Consensus 58 ~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~-~~l~~~~~i~~iV 132 (470)
T TIGR00614 58 SPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLL-QTLEERKGITLIA 132 (470)
T ss_pred ecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHH-HHHHhcCCcCEEE
Confidence 99999999999888764 7888888888776543322 2345899999999975321000 0011467899999
Q ss_pred ecchhHhhhCC--CHHHHHH---HHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHHhh
Q 020452 206 LDEADRMIENG--HFRELQS---IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKLK 276 (326)
Q Consensus 206 iDEah~l~~~~--~~~~i~~---il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l~ 276 (326)
|||||++.+++ |...+.. +...+ +..|++++|||++.. .++.+++.
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-------------------------~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKF-------------------------PNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHc-------------------------CCCceEEEecCCCHHHHHHHHHHcC
Confidence 99999999876 4444433 34444 357899999999854 45556553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=219.65 Aligned_cols=169 Identities=24% Similarity=0.315 Sum_probs=130.5
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc--------
Q 020452 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-------- 148 (326)
Q Consensus 77 v~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-------- 148 (326)
|+||||||||++|.+|++..+....... ........+.++|||+|+++|+.|+++.++..+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~----------~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~ 70 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGED----------TREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRR 70 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccc----------ccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5799999999999999999987542100 0000112357999999999999999999875221
Q ss_pred ----CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHH
Q 020452 149 ----GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224 (326)
Q Consensus 149 ----~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~i 224 (326)
..++++...+|+++..++.+.+.+.+||||+||++|..++.+. ....++++++|||||+|.|.+..++..+...
T Consensus 71 ~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 71 RGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred cccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 2478999999999998887777788999999999999888643 2346899999999999999977666655555
Q ss_pred HHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
+++|.... ..+.|+|++|||+++.+++.+||..
T Consensus 149 LeRL~~l~--------------------~~~~QrIgLSATI~n~eevA~~L~g 181 (1490)
T PRK09751 149 LERLDALL--------------------HTSAQRIGLSATVRSASDVAAFLGG 181 (1490)
T ss_pred HHHHHHhC--------------------CCCCeEEEEEeeCCCHHHHHHHhcC
Confidence 54443110 0568999999999999999999963
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=195.58 Aligned_cols=197 Identities=25% Similarity=0.305 Sum_probs=164.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
..++|++++.+.+.|+..|++.+.|+|..++..-+..|.|.+++++|+||||++.-++-+..++..
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------------- 260 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------------- 260 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--------------
Confidence 467899999999999999999999999999988777999999999999999999999888887653
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH----HHhcCCCEEEeCcHHHHHHHhc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.+.||++|.-+||+|-++.|+.-..++++++..-+|..-...... .....+||||||.+.+-.+++.
T Consensus 261 --------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt 332 (830)
T COG1202 261 --------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT 332 (830)
T ss_pred --------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc
Confidence 4589999999999999999999998999999988887654433321 1223679999999999888877
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHH
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 270 (326)
+ ..+.++..+||||+|.+-+..++.-+.-++.+|+... +..|+|.+|||+.|+.+
T Consensus 333 g----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~---------------------~~AQ~i~LSATVgNp~e 387 (830)
T COG1202 333 G----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF---------------------PGAQFIYLSATVGNPEE 387 (830)
T ss_pred C----CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC---------------------CCCeEEEEEeecCChHH
Confidence 6 6688999999999998887666665555555554221 56899999999999999
Q ss_pred HHHHhhcc
Q 020452 271 FRKKLKHG 278 (326)
Q Consensus 271 ~~~~l~~~ 278 (326)
+++.|...
T Consensus 388 lA~~l~a~ 395 (830)
T COG1202 388 LAKKLGAK 395 (830)
T ss_pred HHHHhCCe
Confidence 99998753
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=201.44 Aligned_cols=170 Identities=22% Similarity=0.366 Sum_probs=131.0
Q ss_pred HHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 48 SIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 48 ~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.|++ +||..++|+|.++|+.++ +|+|+++++|||+|||++|++|++.. +..+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~~--------------------------~g~~ 56 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALLL--------------------------KGLT 56 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHHc--------------------------CCcE
Confidence 4544 899999999999999996 89999999999999999999998742 1268
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+|++|+++|+.|+.+.++.+ ++.+..+.++.........+ ....+|+++||+++..... .......+++
T Consensus 57 lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~---~~~l~~~~l~ 129 (591)
T TIGR01389 57 VVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYF---LNMLQRIPIA 129 (591)
T ss_pred EEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHH---HHHHhcCCCC
Confidence 99999999999999988875 78888899888776554332 3468999999999853221 1124456899
Q ss_pred EEeecchhHhhhCC--CHHHHH---HHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHHh
Q 020452 203 FFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKL 275 (326)
Q Consensus 203 ~lViDEah~l~~~~--~~~~i~---~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l 275 (326)
++||||||++.++| |...+. .+...++ ..+++++|||.+.. .++.++|
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-------------------------~~~vi~lTAT~~~~~~~~i~~~l 184 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-------------------------QVPRIALTATADAETRQDIRELL 184 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHhCC-------------------------CCCEEEEEeCCCHHHHHHHHHHc
Confidence 99999999999876 444443 4444443 35699999999855 4566776
Q ss_pred h
Q 020452 276 K 276 (326)
Q Consensus 276 ~ 276 (326)
.
T Consensus 185 ~ 185 (591)
T TIGR01389 185 R 185 (591)
T ss_pred C
Confidence 4
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=199.17 Aligned_cols=176 Identities=21% Similarity=0.303 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 40 RLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 40 ~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
++.+...+.|++ +||..|+|+|+++|+.++ +|+|+++.+|||+|||++|++|++..
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~---------------------- 64 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL---------------------- 64 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc----------------------
Confidence 344455555655 899999999999999985 89999999999999999999998853
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHH--HHhcCC
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWE--LMSGGE 192 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~--ll~~~~ 192 (326)
...+||++|+++|+.|+.+.+..+ ++.+..+.++.......... ....+++++||+++.. ++.
T Consensus 65 ----~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~--- 133 (607)
T PRK11057 65 ----DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE--- 133 (607)
T ss_pred ----CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---
Confidence 126999999999999999888775 77888888877765543322 2357899999999863 221
Q ss_pred cccccCCCeeEEeecchhHhhhCC--CHHH---HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 193 KHLVELHTLSFFVLDEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~--~~~~---i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.....+++++||||||++.+++ |... +..+...+ +..|++++|||.+.
T Consensus 134 --~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-------------------------p~~~~v~lTAT~~~ 186 (607)
T PRK11057 134 --HLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-------------------------PTLPFMALTATADD 186 (607)
T ss_pred --HHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-------------------------CCCcEEEEecCCCh
Confidence 1234578999999999999876 4433 33444444 35789999999986
Q ss_pred cH--HHHHHhh
Q 020452 268 SA--DFRKKLK 276 (326)
Q Consensus 268 ~~--~~~~~l~ 276 (326)
.. ++.+.+.
T Consensus 187 ~~~~di~~~l~ 197 (607)
T PRK11057 187 TTRQDIVRLLG 197 (607)
T ss_pred hHHHHHHHHhC
Confidence 53 4555543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=212.84 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=118.6
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 020452 43 PLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 121 (326)
Q Consensus 43 ~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
..+.+.+++ +|| .|+++|+.+++.++ +|+|++++||||+|||++++++.+... .
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~-----------------------~ 120 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLA-----------------------L 120 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHH-----------------------h
Confidence 344555665 899 69999999999996 899999999999999996665554332 1
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCC--CcEEEEEEcCCCHHHHHHH---Hhc-CCCEEEeCcHHHHHHHhcCCccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQERL---LKA-RPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
.+.++||++||++|+.|+++.++.++... ++++..++|+.+...+... +.. .++|+|+||++|.+.+...
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---- 196 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---- 196 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----
Confidence 24589999999999999999999998765 4677888999887665432 333 5899999999998876531
Q ss_pred ccCCCeeEEeecchhHhhh-----------CCCHHHHHH
Q 020452 196 VELHTLSFFVLDEADRMIE-----------NGHFRELQS 223 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~-----------~~~~~~i~~ 223 (326)
. ..+++++|+||||+|++ .||.+++..
T Consensus 197 ~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 197 K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 2 26799999999999986 477776653
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=203.87 Aligned_cols=166 Identities=21% Similarity=0.236 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 40 RLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQ-----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 40 ~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~-----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
+.+..+...+.+ ++| .||+.|.++|+.++.. ++|.+++||||+|||.+|+.+++..+..
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------------- 499 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------------- 499 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------------
Confidence 345566666655 788 6999999999999632 3799999999999999999999887632
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH---h-cCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~IlV~Tp~~l~~ll~ 189 (326)
+.+++|++||++||.|+++.+++++...++++..++|+....+....+ . ..++||||||.. +.
T Consensus 500 ---------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~ 566 (926)
T TIGR00580 500 ---------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ 566 (926)
T ss_pred ---------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh
Confidence 358999999999999999999999988899999999887755443332 2 368999999943 32
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
. ...+++++++|+||+|++. ......+..++ ..+|+++||||+.
T Consensus 567 ~----~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~------------------------~~~~vL~~SATpi 610 (926)
T TIGR00580 567 K----DVKFKDLGLLIIDEEQRFG-----VKQKEKLKELR------------------------TSVDVLTLSATPI 610 (926)
T ss_pred C----CCCcccCCEEEeecccccc-----hhHHHHHHhcC------------------------CCCCEEEEecCCC
Confidence 2 2568899999999999853 23344455555 5689999999964
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=208.12 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=118.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.++.+.+.+.....|+++|+.+++.++ .|+|++++||||+|||. |.+|+...+.. .
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------------------~ 120 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------------------K 120 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh----------------------c
Confidence 334455555344489999999999985 89999999999999996 66666654421 1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE---EEEcCCCHHHHHH---HHh-cCCCEEEeCcHHHHHHHhcCCccc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVV---PIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~---~~~g~~~~~~~~~---~~~-~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
+++++|++||++||.|+++.++.++...++.+. .++|+.+...+.. .+. .+++|+|+||++|.+.+...
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---- 196 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---- 196 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh----
Confidence 468999999999999999999999987776543 4678887765433 233 35999999999998877532
Q ss_pred ccCCCeeEEeecchhHhhh-----------CCCHH-HHHHHHHhC
Q 020452 196 VELHTLSFFVLDEADRMIE-----------NGHFR-ELQSIIDML 228 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~-----------~~~~~-~i~~il~~l 228 (326)
. . +++++|+||||+|++ .||.+ .+..++..+
T Consensus 197 ~-~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~ 239 (1171)
T TIGR01054 197 G-P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLI 239 (1171)
T ss_pred c-C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHh
Confidence 1 1 799999999999997 56755 356655443
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=199.86 Aligned_cols=135 Identities=25% Similarity=0.396 Sum_probs=111.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQG------KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 119 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g------~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
......++| .||++|+++++.+. ++ .+.+++||||||||.+|++|++..+.
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~-~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------------------- 308 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEIL-ADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------------------- 308 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHH-HhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------------------
Confidence 334456888 79999999999985 44 48999999999999999999988762
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH---HHh-cCCCEEEeCcHHHHHHHhcCCccc
Q 020452 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 120 ~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~-~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
.+.+++|++||++||.|+++.+++++...++++..++|+........ .+. ..++|+||||+.+.+ .
T Consensus 309 --~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~ 378 (681)
T PRK10917 309 --AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD--------D 378 (681)
T ss_pred --cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc--------c
Confidence 25589999999999999999999999988999999999998654433 233 359999999987632 1
Q ss_pred ccCCCeeEEeecchhHhh
Q 020452 196 VELHTLSFFVLDEADRMI 213 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~ 213 (326)
..+++++++|+||+|++.
T Consensus 379 v~~~~l~lvVIDE~Hrfg 396 (681)
T PRK10917 379 VEFHNLGLVIIDEQHRFG 396 (681)
T ss_pred chhcccceEEEechhhhh
Confidence 457889999999999874
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=195.15 Aligned_cols=139 Identities=27% Similarity=0.390 Sum_probs=114.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQG-----KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g-----~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
..+.+.+..++| .||+.|+++|+.++..- .+.+++||||||||.+|++|++..+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------------- 282 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------------- 282 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 445566678999 89999999999986321 36899999999999999999998762
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCc
Q 020452 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 118 ~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
.+.+++|++||++||.|+++.+++++...++++..++|+.........+ ...++|+||||+.+.+.
T Consensus 283 ----~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------ 352 (630)
T TIGR00643 283 ----AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------ 352 (630)
T ss_pred ----cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc------
Confidence 1458999999999999999999999998899999999998876543322 23579999999886421
Q ss_pred ccccCCCeeEEeecchhHhh
Q 020452 194 HLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~ 213 (326)
..+++++++|+||+|++.
T Consensus 353 --~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 353 --VEFKRLALVIIDEQHRFG 370 (630)
T ss_pred --ccccccceEEEechhhcc
Confidence 457889999999999864
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=201.98 Aligned_cols=175 Identities=21% Similarity=0.273 Sum_probs=148.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
.......|| .|.++|++++..+ ..|.+++++||||+|||++...++...+.. +-+
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~L-er~esVlV~ApTssGKTvVaeyAi~~al~~-----------------------~qr 164 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAIL-ERGESVLVCAPTSSGKTVVAEYAIALALRD-----------------------GQR 164 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHH-hCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------------------CCc
Confidence 334456788 8999999999887 799999999999999999988877766533 337
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
++|.+|.++|.+|.++.+...+....-.+++++|+... +.++.++|.|.+.|..++..+. ..+..+.+||
T Consensus 165 viYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~---~~~~~i~~Vi 234 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVV 234 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCc---ccccccceEE
Confidence 99999999999999999988765432235778888765 3457899999999999997764 6788999999
Q ss_pred ecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccc
Q 020452 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 279 (326)
|||+|.|.+...+..++.++-.+| ...|+|++|||+||+.+|..|+.+..
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP------------------------~~v~~v~LSATv~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLP------------------------DHVRFVFLSATVPNAEEFAEWIQRVH 284 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcC------------------------CCCcEEEEeCCCCCHHHHHHHHHhcc
Confidence 999999999999999999999999 78899999999999999999998543
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=201.19 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=126.8
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 45 LMKSIYRLGFKEPTPIQKACIPAAAHQG------KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 45 i~~~l~~~g~~~p~~~Q~~~i~~~l~~g------~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
..+....++| .||+.|.++|+.++ ++ +|++++++||+|||.+|+.+++..+.
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il-~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-------------------- 647 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVL-SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-------------------- 647 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHH-HHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------------------
Confidence 3444566888 79999999999986 44 79999999999999999888766542
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcc
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
.+.+++|++||++||.|+++.+++.+...++++..++|+.+..++...+. ..++|+||||+.+ ..
T Consensus 648 ---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---- 716 (1147)
T PRK10689 648 ---NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---- 716 (1147)
T ss_pred ---cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC----
Confidence 24589999999999999999999988877889989999888776655443 4689999999643 22
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
...++++++||+||+|++. +. . ...+..++ .++|+++||||+.
T Consensus 717 ~v~~~~L~lLVIDEahrfG---~~-~-~e~lk~l~------------------------~~~qvLl~SATpi 759 (1147)
T PRK10689 717 DVKWKDLGLLIVDEEHRFG---VR-H-KERIKAMR------------------------ADVDILTLTATPI 759 (1147)
T ss_pred CCCHhhCCEEEEechhhcc---hh-H-HHHHHhcC------------------------CCCcEEEEcCCCC
Confidence 1457889999999999973 22 2 23445555 6789999999975
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=193.31 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=128.3
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 37 NELRLHPLLMKSIY-----RLGFKEP---TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 37 ~~l~l~~~i~~~l~-----~~g~~~p---~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
+.|.+...+.+.+. .+||..| +|+|.++++.++ .++++++.++||+|||++|++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 56678888888877 5899998 999999999985 889999999999999999999999877532
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WEL 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~l 187 (326)
..++||+||++||.|.++.+..+.+.+++++++++||.+...+.... ++||+||||++| .++
T Consensus 136 ---------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDy 198 (970)
T PRK12899 136 ---------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDY 198 (970)
T ss_pred ---------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHH
Confidence 14899999999999999999999999999999999999988776554 599999999999 999
Q ss_pred HhcCCcccc----cCCCeeEEeecchhHhh
Q 020452 188 MSGGEKHLV----ELHTLSFFVLDEADRMI 213 (326)
Q Consensus 188 l~~~~~~~~----~l~~l~~lViDEah~l~ 213 (326)
++.+..... ....+.++|+||||.|+
T Consensus 199 Lrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 199 LRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred hhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 976531111 12356899999999987
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=156.16 Aligned_cols=169 Identities=39% Similarity=0.604 Sum_probs=135.4
Q ss_pred HCCCCCChHHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 51 RLGFKEPTPIQKACIPAAAHQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
..++..|+++|.+++..++ +. +++++.++||+|||.+++.+++..+... ...+++|+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------------------~~~~~l~~ 60 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG---------------------KGKRVLVL 60 (201)
T ss_pred ccCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc---------------------CCCcEEEE
Confidence 4567899999999999985 66 8999999999999999999888876432 12479999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCC-CEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARP-ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
+|++.++.|+...+..++...........++............+. +|+++|++.+.+.+.... .....++++|+||
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE 137 (201)
T smart00487 61 VPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDE 137 (201)
T ss_pred eCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEEC
Confidence 999999999999999987655434444555555445555555555 999999999999887643 4567789999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+|.+....+...+..++..++ ...+++++|||.++.
T Consensus 138 ~h~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~saT~~~~ 173 (201)
T smart00487 138 AHRLLDGGFGDQLEKLLKLLP------------------------KNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHhcCCcHHHHHHHHHhCC------------------------ccceEEEEecCCchh
Confidence 999986578888888888775 678999999999844
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-21 Score=173.87 Aligned_cols=124 Identities=34% Similarity=0.489 Sum_probs=107.2
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCC---CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGI---NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..|+++|+-|+|+|++|.+..++++-.+. .++..++.||.....+...+.++.||+|+||+|+.++++.+. ..+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~---~~l 361 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL---VTL 361 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc---eee
Confidence 35799999999999999999888876554 356668899998889999999999999999999999998764 778
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..++++|+||+|.++..++-+.|.++..++|...+.. ...|.+++|||+.
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg------------------~rlq~~vCsatlh 411 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG------------------FRLQSPVCSATLH 411 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC------------------cccccceeeeEEe
Confidence 8999999999999999999999999999998543322 4689999999996
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=180.19 Aligned_cols=151 Identities=20% Similarity=0.171 Sum_probs=113.5
Q ss_pred CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
...|+++|.++++.++ .+++.++++|||+|||+++...+ ..+... ...++||++||+
T Consensus 112 ~~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~-~~~~~~---------------------~~~~vLilvpt~ 168 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLS-RYYLEN---------------------YEGKVLIIVPTT 168 (501)
T ss_pred cCCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH-HHHHhc---------------------CCCeEEEEECcH
Confidence 3489999999999986 67889999999999999765422 222111 133899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
+|+.|+.+.++++.......+..+.+|.... .+.+|+|+||+++.+... ..+++++++|+||||++.
T Consensus 169 eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~ 235 (501)
T PHA02558 169 SLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFT 235 (501)
T ss_pred HHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhccc
Confidence 9999999999998654444555566664432 357899999999865432 346789999999999997
Q ss_pred hCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 214 ~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. .+..++..++ +.+|+++||||+...
T Consensus 236 ~~----~~~~il~~~~------------------------~~~~~lGLTATp~~~ 262 (501)
T PHA02558 236 GK----SLTSIITKLD------------------------NCKFKFGLTGSLRDG 262 (501)
T ss_pred ch----hHHHHHHhhh------------------------ccceEEEEeccCCCc
Confidence 53 4556666665 457899999999754
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-21 Score=187.40 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=144.7
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
...+| +|..+|++||.++ ..|.++++.|+|.+|||.++-.+|...- .++.|++|.
T Consensus 292 ~~~pF-elD~FQk~Ai~~l-erg~SVFVAAHTSAGKTvVAEYAialaq-----------------------~h~TR~iYT 346 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHL-ERGDSVFVAAHTSAGKTVVAEYAIALAQ-----------------------KHMTRTIYT 346 (1248)
T ss_pred hhCCC-CccHHHHHHHHHH-HcCCeEEEEecCCCCcchHHHHHHHHHH-----------------------hhccceEec
Confidence 44677 8999999999888 6899999999999999999766554321 235699999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
+|-++|.+|-++.|+.-+... ++++|+...+. .+.++|.|.+.|..++.++. .-..++.+|||||+
T Consensus 347 SPIKALSNQKfRDFk~tF~Dv----gLlTGDvqinP-------eAsCLIMTTEILRsMLYrga---dliRDvE~VIFDEV 412 (1248)
T KOG0947|consen 347 SPIKALSNQKFRDFKETFGDV----GLLTGDVQINP-------EASCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEV 412 (1248)
T ss_pred chhhhhccchHHHHHHhcccc----ceeecceeeCC-------CcceEeehHHHHHHHHhccc---chhhccceEEEeee
Confidence 999999999999999876643 37888876544 37899999999999998764 55678999999999
Q ss_pred hHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcccccc
Q 020452 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKL 282 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~ 282 (326)
|.+.|..++-.++.++-++| ..+++|++|||+||..+|++|.++..-+.
T Consensus 413 HYiND~eRGvVWEEViIMlP------------------------~HV~~IlLSATVPN~~EFA~WIGRtK~K~ 461 (1248)
T KOG0947|consen 413 HYINDVERGVVWEEVIIMLP------------------------RHVNFILLSATVPNTLEFADWIGRTKQKT 461 (1248)
T ss_pred eecccccccccceeeeeecc------------------------ccceEEEEeccCCChHHHHHHhhhccCce
Confidence 99999999999999999999 78999999999999999999998754443
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=163.12 Aligned_cols=169 Identities=23% Similarity=0.274 Sum_probs=136.2
Q ss_pred CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.-+++.+|......++ .+|++++.|||-|||+.+++-+..++... ++ ++|+++||+
T Consensus 13 ~ie~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~~---------------------~~-kvlfLAPTK 68 (542)
T COG1111 13 TIEPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRWF---------------------GG-KVLFLAPTK 68 (542)
T ss_pred cccHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHhc---------------------CC-eEEEecCCc
Confidence 3478999999988875 56999999999999999988888776432 23 899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
-|+.|.++.+.+.+.-..-.++.++|..........|.. ..|+|+||+.+..=|..+. .++.++.++||||||+-.
T Consensus 69 PLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Gr---id~~dv~~lifDEAHRAv 144 (542)
T COG1111 69 PLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGR---IDLDDVSLLIFDEAHRAV 144 (542)
T ss_pred hHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCc---cChHHceEEEechhhhcc
Confidence 999999999999987666788999999999888777764 6899999999987776553 889999999999999987
Q ss_pred hCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 214 ~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
....+..+..-...-. .++.++++|||.....+-...
T Consensus 145 GnyAYv~Va~~y~~~~------------------------k~~~ilgLTASPGs~~ekI~e 181 (542)
T COG1111 145 GNYAYVFVAKEYLRSA------------------------KNPLILGLTASPGSDLEKIQE 181 (542)
T ss_pred CcchHHHHHHHHHHhc------------------------cCceEEEEecCCCCCHHHHHH
Confidence 5544555544333322 568999999999877443333
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-20 Score=183.34 Aligned_cols=254 Identities=17% Similarity=0.234 Sum_probs=180.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 020452 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115 (326)
Q Consensus 36 f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~ 115 (326)
|.-..++.+-..++. |...++++|..+.++++....++++|||||+|||..+++-+++.+......
T Consensus 291 ~~iselP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~------------ 356 (1674)
T KOG0951|consen 291 VKISELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE------------ 356 (1674)
T ss_pred EeecCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc------------
Confidence 444455555565554 455699999999999987778999999999999999999999988544321
Q ss_pred hhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCccc
Q 020452 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195 (326)
Q Consensus 116 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~ 195 (326)
.........+++|++|.++|++.+...+.+.+..+|++|.-++|+....... ....+|+||||++ ++.+.+.....
T Consensus 357 dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK-~DiITRk~gdr 432 (1674)
T KOG0951|consen 357 DGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEK-WDIITRKSGDR 432 (1674)
T ss_pred ccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccch-hhhhhcccCch
Confidence 0112344569999999999999999999999999999999999997754442 2357899999999 67775543222
Q ss_pred ccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHh
Q 020452 196 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275 (326)
Q Consensus 196 ~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 275 (326)
.-.+-++++|+||+|.+.| .++..++.|..+....... ...+++++++|||+||.+|.+.+|
T Consensus 433 aY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses-----------------~~e~~RlVGLSATLPNy~DV~~Fl 494 (1674)
T KOG0951|consen 433 AYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSES-----------------TEEGSRLVGLSATLPNYEDVASFL 494 (1674)
T ss_pred hHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhh-----------------cccCceeeeecccCCchhhhHHHh
Confidence 3334578999999997654 5788888888766532211 225789999999999999999987
Q ss_pred hccc---------cccccccC---c--------------cccHHHHHHHhCCccCcEEEe-cCChHHHHhhhhhhcc
Q 020452 276 KHGS---------LKLKQSVN---G--------------LNSIETLSERAGMRANVAIVD-LTNVSVLANKLEESFI 325 (326)
Q Consensus 276 ~~~~---------~~~~~~~~---~--------------~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 325 (326)
.... ++..+..+ + ....+++.+.++-.+-..++- -.....++..||...+
T Consensus 495 ~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~l 571 (1674)
T KOG0951|consen 495 RVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKAL 571 (1674)
T ss_pred ccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHh
Confidence 6432 22222211 1 122355666666533333333 3346788888886654
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-20 Score=179.01 Aligned_cols=164 Identities=23% Similarity=0.319 Sum_probs=142.4
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.+.| .+.|+|..+|..+ .++.++++.|.|.+|||.++-.+|...+..++ |+||..
T Consensus 125 ~YPF-~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-----------------------RVIYTS 179 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-----------------------RVIYTS 179 (1041)
T ss_pred CCCc-ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHhcC-----------------------eEEeeC
Confidence 3455 7899999999888 79999999999999999999888877764432 899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
|-++|.+|-|+.+..-++ .|++++|+...+. .+..+|.|.+.|..++.++. .-+..+.|+|+||+|
T Consensus 180 PIKALSNQKYREl~~EF~----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIH 245 (1041)
T KOG0948|consen 180 PIKALSNQKYRELLEEFK----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIH 245 (1041)
T ss_pred hhhhhcchhHHHHHHHhc----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeeh
Confidence 999999999999887765 5667888877633 47899999999999998775 667889999999999
Q ss_pred HhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 211 ~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
.|-|..++-.++.-+-.|| .+.+.+++|||+||+.+|++|..+
T Consensus 246 YMRDkERGVVWEETIIllP------------------------~~vr~VFLSATiPNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLP------------------------DNVRFVFLSATIPNARQFAEWICH 288 (1041)
T ss_pred hccccccceeeeeeEEecc------------------------ccceEEEEeccCCCHHHHHHHHHH
Confidence 9999988888888888888 789999999999999999999875
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=162.23 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 60 IQKACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 60 ~Q~~~i~~~l~~g~--dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
+|.++++.+. ++. ++++++|||+|||.+|++|++.. ..+++|++|+++|++
T Consensus 1 hQ~~~~~~~~-~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------------------~~~~~~~~P~~aL~~ 53 (357)
T TIGR03158 1 HQVATFEALQ-SKDADIIFNTAPTGAGKTLAWLTPLLHG--------------------------ENDTIALYPTNALIE 53 (357)
T ss_pred CHHHHHHHHH-cCCCCEEEEECCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeChHHHHH
Confidence 5999999996 554 47889999999999999998841 226899999999999
Q ss_pred HHHHHHHHHHcCC----CcEEEEEEcCCCHHH--H------------------HHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 138 QVTDHLKEVAKGI----NVRVVPIVGGMSTEK--Q------------------ERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 138 Q~~~~l~~~~~~~----~~~v~~~~g~~~~~~--~------------------~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
|+++.++.++... +..+..+.|.+..+. . .......++|+++||+.+..+++....
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~ 133 (357)
T TIGR03158 54 DQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYI 133 (357)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhcc
Confidence 9999999987532 566666776532220 0 011123688999999999776653211
Q ss_pred -----ccccCCCeeEEeecchhHhhhCCC-----HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 194 -----HLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 194 -----~~~~l~~l~~lViDEah~l~~~~~-----~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
....+.+++++|+||+|.+..++. ......++.... ...+++++||
T Consensus 134 ~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~------------------------~~~~~i~lSA 189 (357)
T TIGR03158 134 DRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE------------------------CRRKFVFLSA 189 (357)
T ss_pred CcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh------------------------cCCcEEEEec
Confidence 112357899999999998764332 112333333333 3479999999
Q ss_pred eccCcHHHHHHh
Q 020452 264 TIALSADFRKKL 275 (326)
Q Consensus 264 Tl~~~~~~~~~l 275 (326)
|++. .+.+.|
T Consensus 190 T~~~--~~~~~l 199 (357)
T TIGR03158 190 TPDP--ALILRL 199 (357)
T ss_pred CCCH--HHHHHH
Confidence 9973 444444
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=171.94 Aligned_cols=179 Identities=21% Similarity=0.172 Sum_probs=132.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
+.+......---..-.++.+|.+....++ |+|+|+++|||+|||+++...++.++...
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-------------------- 104 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR-------------------- 104 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcC--------------------
Confidence 44444444433344489999999999885 99999999999999999999888887322
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
.+.++|+++|++-|+.|+...+..++.. -.+....||.........+-...+|++.||+.+..-|.++.. ..+++
T Consensus 105 -p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~ 179 (746)
T KOG0354|consen 105 -PKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSD 179 (746)
T ss_pred -CcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccce
Confidence 1359999999999999999777777544 344555566443333334555789999999999988876642 33789
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
+.++||||||+-....-+..+.+-+-.++. ...|++++|||+++..
T Consensus 180 fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~-----------------------~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 180 FSLIVFDECHRTSKNHPYNNIMREYLDLKN-----------------------QGNQILGLTASPGSKL 225 (746)
T ss_pred EEEEEEcccccccccccHHHHHHHHHHhhh-----------------------ccccEEEEecCCCccH
Confidence 999999999998866666666644444441 3449999999999663
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=171.26 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=125.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
+.-.|+++|..++..++ .+ |+++++|||+|||+++++++...+. . .+.++||++||
T Consensus 12 ~~~~~r~yQ~~~~~~~l-~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~---------------------~~~~vLvl~Pt 67 (773)
T PRK13766 12 NTIEARLYQQLLAATAL-KK-NTLVVLPTGLGKTAIALLVIAERLH-K---------------------KGGKVLILAPT 67 (773)
T ss_pred CcCCccHHHHHHHHHHh-cC-CeEEEcCCCccHHHHHHHHHHHHHH-h---------------------CCCeEEEEeCc
Confidence 34488999999998875 44 9999999999999999998887762 1 13489999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
++|+.|+.+.++.++...+.++..++|+........ ...+++|+|+||+.+...+..+. ..+.+++++||||||++
T Consensus 68 ~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~liVvDEaH~~ 143 (773)
T PRK13766 68 KPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGR---ISLEDVSLLIFDEAHRA 143 (773)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCC---CChhhCcEEEEECCccc
Confidence 999999999999987654557888888887665443 33467999999999977665432 56788999999999998
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.....+..+...+.... ...+++++|||...
T Consensus 144 ~~~~~~~~i~~~~~~~~------------------------~~~~il~lTaTP~~ 174 (773)
T PRK13766 144 VGNYAYVYIAERYHEDA------------------------KNPLVLGLTASPGS 174 (773)
T ss_pred cccccHHHHHHHHHhcC------------------------CCCEEEEEEcCCCC
Confidence 75544444444433222 45789999999753
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=170.64 Aligned_cols=165 Identities=15% Similarity=0.056 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLA---------FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~---------~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
..+|+++++.+ .++++++++|+||||||.+ |++|.+..+..-. ....+.++++
T Consensus 166 ~~iQ~qil~~i-~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----------------~~~~~~~ilv 227 (675)
T PHA02653 166 PDVQLKIFEAW-ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----------------PNFIERPIVL 227 (675)
T ss_pred HHHHHHHHHHH-HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----------------cccCCcEEEE
Confidence 34899999998 4899999999999999987 3344444332100 0123458999
Q ss_pred EeCcHHHHHHHHHHHHHHHcC---CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 129 ITPTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
++||++||.|+...+.+..+. .+..+...+|+... ..........+|+|+|++.. ...++++++||
T Consensus 228 t~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VV 296 (675)
T PHA02653 228 SLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVI 296 (675)
T ss_pred ECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEE
Confidence 999999999999999876654 35678889999873 22222223679999997521 13478899999
Q ss_pred ecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC-cHHHHHHhh
Q 020452 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL-SADFRKKLK 276 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~-~~~~~~~l~ 276 (326)
+||||.+...+ +.+..++..+.. ..+|+++||||++. .+.+.+++.
T Consensus 297 IDEaHEr~~~~--DllL~llk~~~~-----------------------~~rq~ILmSATl~~dv~~l~~~~~ 343 (675)
T PHA02653 297 IDEVHEHDQIG--DIIIAVARKHID-----------------------KIRSLFLMTATLEDDRDRIKEFFP 343 (675)
T ss_pred ccccccCccch--hHHHHHHHHhhh-----------------------hcCEEEEEccCCcHhHHHHHHHhc
Confidence 99999987654 455555544431 33599999999973 345666554
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=163.94 Aligned_cols=152 Identities=20% Similarity=0.128 Sum_probs=103.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
++++.||||||||.+|+++++..+.. ..+.+++|++|+++|+.|+++.+..++.. .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------------------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~ 56 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------------------QKADRVIIALPTRATINAMYRRAKELFGS---N 56 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------------------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---c
Confidence 58999999999999999999987532 12458999999999999999999998542 3
Q ss_pred EEEEEcCCCHH------------HHHHHH------hcCCCEEEeCcHHHHHHHhcCCc-ccccCC--CeeEEeecchhHh
Q 020452 154 VVPIVGGMSTE------------KQERLL------KARPELVVGTPGRLWELMSGGEK-HLVELH--TLSFFVLDEADRM 212 (326)
Q Consensus 154 v~~~~g~~~~~------------~~~~~~------~~~~~IlV~Tp~~l~~ll~~~~~-~~~~l~--~l~~lViDEah~l 212 (326)
++.++|+.... ...... ....+|+|+||+++...+..... ....+. ..+++|+||+|.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~ 136 (358)
T TIGR01587 57 LGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFY 136 (358)
T ss_pred cEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCC
Confidence 44445443210 000000 11367999999999887754211 111111 2378999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHh
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 275 (326)
.+.++.. +..++..++. .+.|++++|||++ ..+.+++
T Consensus 137 ~~~~~~~-l~~~l~~l~~-----------------------~~~~~i~~SATlp--~~l~~~~ 173 (358)
T TIGR01587 137 DEYTLAL-ILAVLEVLKD-----------------------NDVPILLMSATLP--KFLKEYA 173 (358)
T ss_pred CHHHHHH-HHHHHHHHHH-----------------------cCCCEEEEecCch--HHHHHHH
Confidence 8764433 6666655541 4689999999998 3344443
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-18 Score=170.78 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 142 (326)
+.+..+ .++++++++|+||||||.+|.+++++... .+.+++|+.|+|++|.|+++.
T Consensus 9 ~i~~~l-~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qiA~r 64 (819)
T TIGR01970 9 ALRDAL-AAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------------------IGGKIIMLEPRRLAARSAAQR 64 (819)
T ss_pred HHHHHH-HcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------------------cCCeEEEEeCcHHHHHHHHHH
Confidence 444444 67899999999999999999999987641 134899999999999999999
Q ss_pred HHHH-HcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh-HhhhCCCHHH
Q 020452 143 LKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIENGHFRE 220 (326)
Q Consensus 143 l~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~ 220 (326)
+... ....|..|+..+++... ...+.+|+|+||++|++++.+. ..++++++|||||+| ++++.++.-.
T Consensus 65 va~~~~~~~g~~VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 65 LASQLGEAVGQTVGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred HHHHhCCCcCcEEEEEEccccc------cCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHH
Confidence 8644 34456677766655331 2346799999999999998753 568999999999999 5777666433
Q ss_pred -HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 221 -LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 221 -i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+..+...++ ...|+|+||||+... .+.+++.
T Consensus 135 ll~~i~~~lr------------------------~dlqlIlmSATl~~~-~l~~~l~ 166 (819)
T TIGR01970 135 LALDVQSSLR------------------------EDLKILAMSATLDGE-RLSSLLP 166 (819)
T ss_pred HHHHHHHhcC------------------------CCceEEEEeCCCCHH-HHHHHcC
Confidence 344555565 678999999999843 3555554
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=165.64 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 56 EPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~--g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.+++.|++++..+... ++++++.++||||||.+|+.++...+.. +.++||++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------------------g~~vLvLvPt~ 200 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------------------GKQALVLVPEI 200 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------------------CCeEEEEeCcH
Confidence 5899999999998642 4789999999999999998877665521 44899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
+|+.|+++.+++.+ +.++..++|+.+..+..+.+ ...++|+|||++.+. ..+++++++|+||+
T Consensus 201 ~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEe 267 (679)
T PRK05580 201 ALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEE 267 (679)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECC
Confidence 99999999998864 57889999998876554433 346899999998763 34678999999999
Q ss_pred hHhh
Q 020452 210 DRMI 213 (326)
Q Consensus 210 h~l~ 213 (326)
|...
T Consensus 268 h~~s 271 (679)
T PRK05580 268 HDSS 271 (679)
T ss_pred Cccc
Confidence 9765
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-18 Score=170.82 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=115.4
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 142 (326)
+.+..+ .++++++++|+||||||.+|.+++++... ...+++|+.|+|++|.|+++.
T Consensus 12 ~i~~~l-~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qia~r 67 (812)
T PRK11664 12 ELLTAL-KTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------------------INGKIIMLEPRRLAARNVAQR 67 (812)
T ss_pred HHHHHH-HhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------------------cCCeEEEECChHHHHHHHHHH
Confidence 344444 67899999999999999999998886421 123899999999999999999
Q ss_pred HHHH-HcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-hhhCCC-HH
Q 020452 143 LKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH-FR 219 (326)
Q Consensus 143 l~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~-~~ 219 (326)
+... ....|..++..+++... .....+|+|+|||+|.+++... ..++++++|||||+|. .++..+ ..
T Consensus 68 va~~l~~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ 137 (812)
T PRK11664 68 LAEQLGEKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALA 137 (812)
T ss_pred HHHHhCcccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHH
Confidence 8654 44567778877776542 1234689999999999988753 5689999999999996 444433 22
Q ss_pred HHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 220 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 220 ~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
.+..++..++ .+.|+|+||||++. ..+.+++.
T Consensus 138 ll~~i~~~lr------------------------~~lqlilmSATl~~-~~l~~~~~ 169 (812)
T PRK11664 138 LLLDVQQGLR------------------------DDLKLLIMSATLDN-DRLQQLLP 169 (812)
T ss_pred HHHHHHHhCC------------------------ccceEEEEecCCCH-HHHHHhcC
Confidence 3344555565 67899999999974 34555554
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=129.50 Aligned_cols=144 Identities=42% Similarity=0.598 Sum_probs=109.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
+++++.+|||+|||..++..+....... ...+++|++|++.++.|..+.+...... +.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------------------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~ 58 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------------------KGGQVLVLAPTRELANQVAERLKELFGE-GI 58 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------------------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-Cc
Confidence 4689999999999999988887765321 2348999999999999999999988765 67
Q ss_pred EEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCC
Q 020452 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 232 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~ 232 (326)
.+..+.+.............+.+|+++|++.+...+.... ......+++|+||+|.+.................
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--- 132 (144)
T cd00046 59 KVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP--- 132 (144)
T ss_pred EEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC---
Confidence 7888888777666655566789999999999988775432 3345688999999999986654443222222222
Q ss_pred CCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 233 GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
...+++++|||+
T Consensus 133 ---------------------~~~~~i~~saTp 144 (144)
T cd00046 133 ---------------------KDRQVLLLSATP 144 (144)
T ss_pred ---------------------ccceEEEEeccC
Confidence 568999999995
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=162.49 Aligned_cols=134 Identities=27% Similarity=0.371 Sum_probs=111.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..+.+.+ ..|+ ++.++||+|||++|.+|++-..+. +.++.|++|
T Consensus 53 lg~-~p~~vQlig~~~l-~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~VvTp 105 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL-HKGK--IAEMKTGEGKTLTATLPAYLNALT-----------------------GKGVHVVTV 105 (745)
T ss_pred hCC-CccchHHhhhhhh-cCCc--eeeecCCCccHHHHHHHHHHHHHh-----------------------CCCEEEEcC
Confidence 677 8999999999877 4665 999999999999999999644432 226999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|++||.|.++.+..+...+|+++++++|+.+........ .++|++|||++| .++++.+. .....++.+.++|+|
T Consensus 106 t~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIID 183 (745)
T TIGR00963 106 NDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIID 183 (745)
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEee
Confidence 999999999999999999999999999998875544333 589999999999 89987652 112467889999999
Q ss_pred chhHhhh
Q 020452 208 EADRMIE 214 (326)
Q Consensus 208 Eah~l~~ 214 (326)
|+|.|+-
T Consensus 184 EaDs~LI 190 (745)
T TIGR00963 184 EVDSILI 190 (745)
T ss_pred cHHHHhH
Confidence 9999873
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=156.85 Aligned_cols=172 Identities=24% Similarity=0.365 Sum_probs=133.4
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 47 KSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 47 ~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..|++ +||..+++-|.++|..++ +|+|+++..|||.||++||.+|.+-. ..-
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~--------------------------~G~ 59 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL--------------------------EGL 59 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc--------------------------CCC
Confidence 44555 799999999999999995 89999999999999999999998864 116
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCe
Q 020452 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTL 201 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l 201 (326)
+|||.|..+|.+.+.+.++.. |+++..+.+..+..+....+. ...+++.-+|+++..--. .....--.+
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f---~~~L~~~~i 132 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRF---LELLKRLPI 132 (590)
T ss_pred EEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHH---HHHHHhCCC
Confidence 999999999999999999887 889999998877665544333 347999999999853211 011224558
Q ss_pred eEEeecchhHhhhCC--CHHHHH---HHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHH
Q 020452 202 SFFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKK 274 (326)
Q Consensus 202 ~~lViDEah~l~~~~--~~~~i~---~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~ 274 (326)
.++||||||++.+|| |...+. .+...++ +.+++++|||-+.. .|+...
T Consensus 133 ~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-------------------------~~p~~AlTATA~~~v~~DI~~~ 187 (590)
T COG0514 133 SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-------------------------NPPVLALTATATPRVRDDIREQ 187 (590)
T ss_pred ceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-------------------------CCCEEEEeCCCChHHHHHHHHH
Confidence 899999999999997 655544 4444443 57899999998744 566666
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
|..
T Consensus 188 L~l 190 (590)
T COG0514 188 LGL 190 (590)
T ss_pred hcC
Confidence 654
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-17 Score=157.49 Aligned_cols=133 Identities=25% Similarity=0.300 Sum_probs=109.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..+++.++ .|+ |+.+.||+|||++|.+|++.... .+++++|++|
T Consensus 100 lg~-~p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al-----------------------~G~~v~VvTp 152 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAAL-----------------------AGLPVHVITV 152 (656)
T ss_pred hCC-CCChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhh-----------------------cCCeEEEEcC
Confidence 677 89999999999995 777 99999999999999999998653 2458999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc-----------------
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK----------------- 193 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~----------------- 193 (326)
|++||.|.++.+..++..+|+++++++|+.+.. .+....++||+|||...| .++|+.+-.
T Consensus 153 treLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~ 230 (656)
T PRK12898 153 NDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHG 230 (656)
T ss_pred cHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhcc
Confidence 999999999999999999999999999998753 334445799999999888 666654311
Q ss_pred -----ccccCCCeeEEeecchhHhh
Q 020452 194 -----HLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 194 -----~~~~l~~l~~lViDEah~l~ 213 (326)
.......+.+.||||+|.++
T Consensus 231 ~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 231 RSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred ccCchhhhcccccceeEeeccccee
Confidence 01123557899999999775
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=160.12 Aligned_cols=134 Identities=22% Similarity=0.340 Sum_probs=110.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..+++.+ ..|+ ++.+.||+|||+++++|++...+. +.++.|++|
T Consensus 75 ~g~-~p~~vQl~~~~~l-~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----------------------G~~v~VvTp 127 (790)
T PRK09200 75 LGM-RPYDVQLIGALVL-HEGN--IAEMQTGEGKTLTATMPLYLNALE-----------------------GKGVHLITV 127 (790)
T ss_pred hCC-CCchHHHHhHHHH-cCCc--eeeecCCCcchHHHHHHHHHHHHc-----------------------CCCeEEEeC
Confidence 687 8999999999877 4665 999999999999999999865542 458999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|++||.|.++.+..+...+|++++++.|+.+...+.+.. .+++|++|||+++ .+++...- .....+..+.++|+|
T Consensus 128 t~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvD 206 (790)
T PRK09200 128 NDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIID 206 (790)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEe
Confidence 999999999999999999999999999998843333333 4699999999999 66665431 112346789999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|||.|+
T Consensus 207 EaDsiL 212 (790)
T PRK09200 207 EIDSIL 212 (790)
T ss_pred ccccce
Confidence 999887
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=158.60 Aligned_cols=135 Identities=24% Similarity=0.308 Sum_probs=102.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|......+ ..| .++.++||+|||++|++|++...+. +..++|++|
T Consensus 67 lgl-rpydVQlig~l~l-~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----------------------g~~V~VVTp 119 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVL-HQG--NIAEMKTGEGKTLTATMPLYLNALT-----------------------GKGAMLVTT 119 (762)
T ss_pred cCC-CccHHHHHHHHHh-cCC--ceeEecCCcchHHHHHHHHHHHhhc-----------------------CCceEEeCC
Confidence 566 6667776666554 344 6999999999999999998765532 336999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCC---HHHHHHHHhcCCCEEEeCcHHH-HHHHhcC---CcccccCCCeeEE
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMS---TEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFF 204 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~---~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~---~~~~~~l~~l~~l 204 (326)
+++||.|.++.+..+...+|+++..++++.. .....+....+++|++|||++| .+++... ......+..+.++
T Consensus 120 n~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~ 199 (762)
T TIGR03714 120 NDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYV 199 (762)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEE
Confidence 9999999999999999999999998877622 2222233335799999999999 5666432 1112346789999
Q ss_pred eecchhHhh
Q 020452 205 VLDEADRMI 213 (326)
Q Consensus 205 ViDEah~l~ 213 (326)
|+||||.|+
T Consensus 200 IVDEaDsIL 208 (762)
T TIGR03714 200 IVDEVDSVL 208 (762)
T ss_pred EEecHhhHh
Confidence 999999996
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=154.79 Aligned_cols=133 Identities=24% Similarity=0.339 Sum_probs=108.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..++||+|||++|.+|++...+. +..++|++|
T Consensus 79 lg~-~~ydvQliGg~~L-h~G~--Iaem~TGeGKTL~a~Lpa~~~al~-----------------------G~~V~VvTp 131 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVL-HEGN--IAEMRTGEGKTLVATLPAYLNAIS-----------------------GRGVHIVTV 131 (896)
T ss_pred cCC-CcchHHHhhhhhh-ccCc--cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEcC
Confidence 566 7788887766444 4554 889999999999999999977643 236999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCcc-c--ccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEKH-L--VELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~~-~--~~l~~l~~lViD 207 (326)
|++||.|.++.+..+...+|+++++++|+.+........ .+||+||||++| .++++.+... . .....+.++|+|
T Consensus 132 n~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvD 209 (896)
T PRK13104 132 NDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVD 209 (896)
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEec
Confidence 999999999999999999999999999998877665444 589999999999 9999765210 0 112579999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|||.|+
T Consensus 210 EaDsiL 215 (896)
T PRK13104 210 EVDSIL 215 (896)
T ss_pred cHhhhh
Confidence 999887
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=137.73 Aligned_cols=173 Identities=24% Similarity=0.347 Sum_probs=129.4
Q ss_pred HHHHHHHH-CCCCCC-hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 020452 44 LLMKSIYR-LGFKEP-TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 121 (326)
Q Consensus 44 ~i~~~l~~-~g~~~p-~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (326)
.+..+|++ +|+..+ ++.|++++..+....+||.+++|||+||++||.+|.+..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------------------- 60 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------------------- 60 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------------------
Confidence 46677777 677655 899999999998888899999999999999999999864
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh------cCCCEEEeCcHHHH-----HHHhc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK------ARPELVVGTPGRLW-----ELMSG 190 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~IlV~Tp~~l~-----~ll~~ 190 (326)
+...||+.|..+|..++.+.+..+ .+++..+.+..+..+..+.+. .+..++..||+... .+++.
T Consensus 61 -~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 61 -GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred -CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 227899999999999999998887 667777777777666555443 25679999998752 33432
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCC--HH---HHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGH--FR---ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~--~~---~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
..+-+-+.++|+||||+..+||. .. .+..+.+.+ ....-++++||-
T Consensus 136 ----L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~-------------------------~~vpwvALTATA 186 (641)
T KOG0352|consen 136 ----LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC-------------------------PGVPWVALTATA 186 (641)
T ss_pred ----HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC-------------------------CCCceEEeeccc
Confidence 13345589999999999998863 33 344444444 357788999998
Q ss_pred cCc--HHHHHHh
Q 020452 266 ALS--ADFRKKL 275 (326)
Q Consensus 266 ~~~--~~~~~~l 275 (326)
+-. +|+..-|
T Consensus 187 ~~~VqEDi~~qL 198 (641)
T KOG0352|consen 187 NAKVQEDIAFQL 198 (641)
T ss_pred ChhHHHHHHHHH
Confidence 632 4554444
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=154.17 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=131.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
+| .|..||++.+... ..+..++++|||.+|||++-.. +++..++.. ...-+|+++|+
T Consensus 509 dF-~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY-~iEKVLRes--------------------D~~VVIyvaPt 565 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFY-AIEKVLRES--------------------DSDVVIYVAPT 565 (1330)
T ss_pred cc-CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHH-HHHHHHhhc--------------------CCCEEEEecch
Confidence 45 7999999999987 7889999999999999988644 444444432 13379999999
Q ss_pred HHHHHHHHHHHHHHHcCCC-cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH
Q 020452 133 RELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
++|+.|+...+...+.... .+...+.|....+.+.. --+|+|+|+.|+.+..+|........+..+++++|+||+|.
T Consensus 566 KaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~ 643 (1330)
T KOG0949|consen 566 KALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHL 643 (1330)
T ss_pred HHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhh
Confidence 9999999999888764322 23333444443332222 12699999999999998876433446678999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 212 l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+....-.-.++.++...+ +.++++|||+.|+..|-+|+.
T Consensus 644 iG~~ed~l~~Eqll~li~--------------------------CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 644 IGNEEDGLLWEQLLLLIP--------------------------CPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred ccccccchHHHHHHHhcC--------------------------CCeeEEecccCCHHHHHHHHH
Confidence 986655556666666554 899999999999999999998
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-16 Score=129.24 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 56 EPTPIQKACIPAAAH------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
+|+++|.+++..++. ..+++++.+|||||||.+++..+.... . +++|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------~-~~l~~ 56 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------R-KVLIV 56 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------C-EEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------c-ceeEe
Confidence 689999999988853 268999999999999999876555543 1 79999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEE-----------EEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC------
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVP-----------IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE------ 192 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~-----------~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~------ 192 (326)
+|+..|+.|+.+.+..+.......... ..................+++++|...+........
T Consensus 57 ~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 136 (184)
T PF04851_consen 57 APNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESA 136 (184)
T ss_dssp ESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--------
T ss_pred cCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccch
Confidence 999999999999997665421111000 000011111222234467899999999987765321
Q ss_pred --cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 193 --KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 193 --~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.........++||+||||++....- ...++. . ....+|+||||..
T Consensus 137 ~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-~-------------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 137 RRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-F-------------------------KAAFILGLTATPF 183 (184)
T ss_dssp -GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-S-------------------------SCCEEEEEESS-S
T ss_pred hhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-C-------------------------CCCeEEEEEeCcc
Confidence 1112345678999999998875431 334443 2 4678999999974
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=143.09 Aligned_cols=130 Identities=21% Similarity=0.227 Sum_probs=94.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~ 155 (326)
++.||||||||.+|+..+...+ .. +.++||++|+++|+.|+++.+++.+ +.++.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~----------------------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~ 54 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL----------------------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVA 54 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc----------------------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEE
Confidence 4689999999999976554443 21 4489999999999999999998864 56788
Q ss_pred EEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC---C---HHHHHHHH
Q 020452 156 PIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG---H---FRELQSII 225 (326)
Q Consensus 156 ~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~---~---~~~i~~il 225 (326)
.++|+.+..+..+.+. ...+|+|||+..+. ..+.+++++||||.|...-.+ . ...+....
T Consensus 55 vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r 124 (505)
T TIGR00595 55 VLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR 124 (505)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH
Confidence 8999887765544333 36799999998762 346789999999999765221 1 12333333
Q ss_pred HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
... .+.++|++|||.+
T Consensus 125 a~~-------------------------~~~~vil~SATPs 140 (505)
T TIGR00595 125 AKK-------------------------FNCPVVLGSATPS 140 (505)
T ss_pred HHh-------------------------cCCCEEEEeCCCC
Confidence 333 4689999999955
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=148.73 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 56 EPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.++|+|++++..++.+| +..++++|||+|||++.+..+.. + +.++|||||+.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------------------~k~tLILvps~ 308 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------------------KKSCLVLCTSA 308 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------------------CCCEEEEeCcH
Confidence 58999999999987555 37899999999999998765432 2 12699999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC---cc--cccCCCeeEEeecc
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE---KH--LVELHTLSFFVLDE 208 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~---~~--~~~l~~l~~lViDE 208 (326)
.|+.|+.+.+.++.......+..++|+.... ......|+|+|++.+.....+.. .. .+.-..+++||+||
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DE 383 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDE 383 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEc
Confidence 9999999999998654445666666653321 11236899999987743221110 00 11124578999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
||++... ....++..+. ....+++|||+.
T Consensus 384 vH~lpA~----~fr~il~~l~-------------------------a~~RLGLTATP~ 412 (732)
T TIGR00603 384 VHVVPAA----MFRRVLTIVQ-------------------------AHCKLGLTATLV 412 (732)
T ss_pred cccccHH----HHHHHHHhcC-------------------------cCcEEEEeecCc
Confidence 9998643 3444555554 245799999996
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-15 Score=149.13 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=110.2
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..|+|+|+.+.... .++..+++.+|||+|||.+++..+...+ .. ++..+++|..||++
T Consensus 285 ~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~-~~--------------------~~~~gi~~aLPT~A 342 (878)
T PRK09694 285 YQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ--------------------GLADSIIFALPTQA 342 (878)
T ss_pred CCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh--------------------CCCCeEEEECcHHH
Confidence 48999999886443 3567889999999999999877665433 21 22348999999999
Q ss_pred HHHHHHHHHHHHHcCC--CcEEEEEEcCCCHHHHH---------------------HHHh---c---CCCEEEeCcHHHH
Q 020452 135 LALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQE---------------------RLLK---A---RPELVVGTPGRLW 185 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~---------------------~~~~---~---~~~IlV~Tp~~l~ 185 (326)
+++|+++++.++.+.. ...+.+.+|........ ..+. + -.+|+|||...++
T Consensus 343 tan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL 422 (878)
T PRK09694 343 TANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVL 422 (878)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHH
Confidence 9999999998765432 34677777765422110 1111 1 2689999998887
Q ss_pred HHHhcCCc---ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 186 ELMSGGEK---HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 186 ~ll~~~~~---~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
...-.... +...+. -++|||||+|.+ +......+..+++.+.. ....+|+||
T Consensus 423 ~a~l~~kh~~lR~~~La-~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-----------------------~g~~vIllS 477 (878)
T PRK09694 423 ISVLPVKHRFIRGFGLG-RSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-----------------------AGGSVILLS 477 (878)
T ss_pred HHHHccchHHHHHHhhc-cCeEEEechhhC-CHHHHHHHHHHHHHHHh-----------------------cCCcEEEEe
Confidence 43322110 011111 258999999987 33334556666665541 456799999
Q ss_pred eeccC
Q 020452 263 ATIAL 267 (326)
Q Consensus 263 ATl~~ 267 (326)
||+|.
T Consensus 478 ATLP~ 482 (878)
T PRK09694 478 ATLPA 482 (878)
T ss_pred CCCCH
Confidence 99983
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-15 Score=141.03 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.|+++|++++..+... ++..++++|||+|||.+++..+... +.++|||||+
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------------------~~~~Lvlv~~ 89 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------------------KRSTLVLVPT 89 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------------------cCCEEEEECc
Confidence 6999999999999644 8899999999999999886655443 1249999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH--HhcCCcccccCCCeeEEeecchh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL--MSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l--l~~~~~~~~~l~~l~~lViDEah 210 (326)
++|+.|+++.+....... ..++.+.|+... .. . ..|.|+|.+.+... +.. ...+...+||+||||
T Consensus 90 ~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~-~~-----~-~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~H 156 (442)
T COG1061 90 KELLDQWAEALKKFLLLN-DEIGIYGGGEKE-LE-----P-AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVH 156 (442)
T ss_pred HHHHHHHHHHHHHhcCCc-cccceecCceec-cC-----C-CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccc
Confidence 999999987777764422 123333333221 11 0 36999999888663 221 223468999999999
Q ss_pred HhhhCCC
Q 020452 211 RMIENGH 217 (326)
Q Consensus 211 ~l~~~~~ 217 (326)
++....+
T Consensus 157 h~~a~~~ 163 (442)
T COG1061 157 HLPAPSY 163 (442)
T ss_pred cCCcHHH
Confidence 9986544
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-15 Score=144.57 Aligned_cols=199 Identities=19% Similarity=0.211 Sum_probs=153.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHH--HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACI--PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i--~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
....|..-+++....-..+..|...++.||.+++ +.++ .++|++..+||+.|||+++.+.++..++-.+.
T Consensus 199 l~~~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr------- 270 (1008)
T KOG0950|consen 199 LLFGFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------- 270 (1008)
T ss_pred hhhhhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh-------
Confidence 3333444334444444456688999999999998 5664 89999999999999999999988887765432
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
.++.+.|..+.+..-...+..+....|+.+...+|....... .+.-++.|||.++-..+++
T Consensus 271 ---------------~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin 331 (1008)
T KOG0950|consen 271 ---------------NVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLIN 331 (1008)
T ss_pred ---------------ceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHH
Confidence 689999999999999999999999899988877766554332 2345799999999876664
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
.. ..-..++.++++|+||.|.+.+.+++..++.++..+-..+.. ...|+|++|||++|..
T Consensus 332 ~l-ie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~-------------------~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 332 SL-IEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE-------------------TSVQIIGMSATIPNNS 391 (1008)
T ss_pred HH-HhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc-------------------cceeEeeeecccCChH
Confidence 32 122346779999999999999999999999988776522211 2378999999999999
Q ss_pred HHHHHhhc
Q 020452 270 DFRKKLKH 277 (326)
Q Consensus 270 ~~~~~l~~ 277 (326)
.+.+||..
T Consensus 392 lL~~~L~A 399 (1008)
T KOG0950|consen 392 LLQDWLDA 399 (1008)
T ss_pred HHHHHhhh
Confidence 99999974
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=142.70 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=109.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-...-.+ +.|+ +..+.||+|||+++.+|++-..+. +..+-|++|
T Consensus 78 lg~-~~~dvQlig~l~L-~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~IvTp 130 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVL-HEGK--IAEMKTGEGKTLVATLPAYLNALT-----------------------GKGVHVVTV 130 (830)
T ss_pred hCC-CCCccHHHhhHHh-cCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----------------------CCCEEEEec
Confidence 677 8899998887554 5664 889999999999999999644332 224779999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
|..||.|.++.+..+...+|++++++.|+.+...+.... .++|++|||++| .++++.+.. .......+.++|+|
T Consensus 131 n~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvD 208 (830)
T PRK12904 131 NDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVD 208 (830)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEe
Confidence 999999999999999999999999999998887766654 489999999999 899975521 11236779999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|||.|+
T Consensus 209 EaDsiL 214 (830)
T PRK12904 209 EVDSIL 214 (830)
T ss_pred chhhhe
Confidence 999887
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-14 Score=133.89 Aligned_cols=142 Identities=25% Similarity=0.383 Sum_probs=114.8
Q ss_pred CCCHHHHHH-HHHCCCCCChHHHHHHHHHHHhc---C--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 40 RLHPLLMKS-IYRLGFKEPTPIQKACIPAAAHQ---G--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 40 ~l~~~i~~~-l~~~g~~~p~~~Q~~~i~~~l~~---g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
+....+++. +..+.| ++|..|++++..+... . .+=++++.-|||||.+++++++..+.
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------------- 309 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------------- 309 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------------
Confidence 344444444 477899 8999999999998421 1 25589999999999999999998773
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~ 189 (326)
.|.++...+||--||+|-++.+.+++..+|++|..++|..........+. ...+|+|||- .++.
T Consensus 310 --------~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH----ALiQ 377 (677)
T COG1200 310 --------AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH----ALIQ 377 (677)
T ss_pred --------cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc----hhhh
Confidence 36699999999999999999999999999999999999988665544333 3589999994 4454
Q ss_pred cCCcccccCCCeeEEeecchhHhh
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
.. ..|+++.++|+||=|+..
T Consensus 378 d~----V~F~~LgLVIiDEQHRFG 397 (677)
T COG1200 378 DK----VEFHNLGLVIIDEQHRFG 397 (677)
T ss_pred cc----eeecceeEEEEecccccc
Confidence 33 779999999999999875
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-14 Score=124.88 Aligned_cols=182 Identities=21% Similarity=0.299 Sum_probs=133.2
Q ss_pred ccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 020452 37 NELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115 (326)
Q Consensus 37 ~~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~ 115 (326)
++++++....+.|+. +....++|.|..+|...+ .|.++++..|||.||++||.+|++-.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~a------------------- 133 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALCA------------------- 133 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHhc-------------------
Confidence 467888888888866 667789999999999984 99999999999999999999998753
Q ss_pred hhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---H-h--cCCCEEEeCcHHHHH---
Q 020452 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---L-K--ARPELVVGTPGRLWE--- 186 (326)
Q Consensus 116 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~-~--~~~~IlV~Tp~~l~~--- 186 (326)
...+|+++|...|++++.-.++.+ |+....+....+.+...+. + + ....++..||+++..
T Consensus 134 -------dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~ 202 (695)
T KOG0353|consen 134 -------DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKK 202 (695)
T ss_pred -------CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHH
Confidence 237999999999999988888887 6665555555544332221 1 1 245689999999853
Q ss_pred HHhcCCcccccCCCeeEEeecchhHhhhCCC-----HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEE
Q 020452 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261 (326)
Q Consensus 187 ll~~~~~~~~~l~~l~~lViDEah~l~~~~~-----~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 261 (326)
+|+.. .+......++++.+||+|+..+||. +..+..+.+++ ++..++++
T Consensus 203 ~mnkl-eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf-------------------------~~~~iigl 256 (695)
T KOG0353|consen 203 FMNKL-EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------KGAPIIGL 256 (695)
T ss_pred HHHHH-HHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC-------------------------CCCceeee
Confidence 23221 1224456789999999999998864 34444444555 46789999
Q ss_pred eeeccCc--HHHHHHh
Q 020452 262 SATIALS--ADFRKKL 275 (326)
Q Consensus 262 SATl~~~--~~~~~~l 275 (326)
+||-++- +|..+.|
T Consensus 257 tatatn~vl~d~k~il 272 (695)
T KOG0353|consen 257 TATATNHVLDDAKDIL 272 (695)
T ss_pred ehhhhcchhhHHHHHH
Confidence 9999865 3444444
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-14 Score=145.59 Aligned_cols=134 Identities=22% Similarity=0.207 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHH---h-cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAA---H-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~-~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.++++|.+|+..+. . ..+..+++++||||||++++. ++.++.+. ....++|||+|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--------------------~~~~rVLfLvD 471 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--------------------KRFRRILFLVD 471 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--------------------CccCeEEEEec
Confidence 58999999997764 2 246899999999999998644 44444332 12348999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC--cccccCCCeeEEeecch
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVLDEA 209 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~--~~~~~l~~l~~lViDEa 209 (326)
+++|+.|..+.+..+....+..+..+++...... ........|+|+|...+...+.... .....+..+++||+|||
T Consensus 472 R~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEa 549 (1123)
T PRK11448 472 RSALGEQAEDAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEA 549 (1123)
T ss_pred HHHHHHHHHHHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECC
Confidence 9999999999998873322211111222111111 1123357899999999877653221 11234678899999999
Q ss_pred hHh
Q 020452 210 DRM 212 (326)
Q Consensus 210 h~l 212 (326)
|+-
T Consensus 550 HRs 552 (1123)
T PRK11448 550 HRG 552 (1123)
T ss_pred CCC
Confidence 985
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-14 Score=142.73 Aligned_cols=175 Identities=23% Similarity=0.265 Sum_probs=128.9
Q ss_pred HHHHH-HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC
Q 020452 45 LMKSI-YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 123 (326)
Q Consensus 45 i~~~l-~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (326)
....+ ..+|...+++-|.++|..+ ..|+|+++.+|||.||++||.+|++-. +
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~-l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------------------~ 304 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINAT-LSGKDCFVLMPTGGGKSLCYQLPALLL--------------------------G 304 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHH-HcCCceEEEeecCCceeeEeecccccc--------------------------C
Confidence 33344 5589999999999999977 499999999999999999999988742 3
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hh-c--CCCEEEeCcHHHHHHHhcCCccccc
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-A--RPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~--~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
...|||.|..+|++.+...+.. .++....+.++.....+... +. . ..+|+..||+++...-.-. .....
T Consensus 305 gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~ 379 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLAD 379 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHh
Confidence 3799999999999987777744 37888889998887544332 22 2 5789999999985422110 11233
Q ss_pred CCC---eeEEeecchhHhhhCC--CHHH---HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc--C
Q 020452 198 LHT---LSFFVLDEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--L 267 (326)
Q Consensus 198 l~~---l~~lViDEah~l~~~~--~~~~---i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--~ 267 (326)
+.. +.++|+||||+...|+ |... +..+....+ .+.+|++|||.+ -
T Consensus 380 L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-------------------------~vP~iALTATAT~~v 434 (941)
T KOG0351|consen 380 LYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-------------------------GVPFIALTATATERV 434 (941)
T ss_pred ccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-------------------------CCCeEEeehhccHHH
Confidence 444 8999999999999886 4444 434444433 479999999995 3
Q ss_pred cHHHHHHhh
Q 020452 268 SADFRKKLK 276 (326)
Q Consensus 268 ~~~~~~~l~ 276 (326)
.+|+.+.|+
T Consensus 435 ~~DIi~~L~ 443 (941)
T KOG0351|consen 435 REDVIRSLG 443 (941)
T ss_pred HHHHHHHhC
Confidence 367777765
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=136.23 Aligned_cols=155 Identities=22% Similarity=0.206 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC----cHHHH
Q 020452 61 QKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP----TRELA 136 (326)
Q Consensus 61 Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P----t~~L~ 136 (326)
-.+.+..+ .+++.++++|+||||||. .+|.+-.- . ..+....+++.-| +++||
T Consensus 79 r~~Il~ai-~~~~VviI~GeTGSGKTT--qlPq~lle--~------------------g~g~~g~I~~TQPRRlAArsLA 135 (1294)
T PRK11131 79 KQDILEAI-RDHQVVIVAGETGSGKTT--QLPKICLE--L------------------GRGVKGLIGHTQPRRLAARTVA 135 (1294)
T ss_pred HHHHHHHH-HhCCeEEEECCCCCCHHH--HHHHHHHH--c------------------CCCCCCceeeCCCcHHHHHHHH
Confidence 33444444 567778889999999998 46633221 0 0011113444446 56888
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh-HhhhC
Q 020452 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIEN 215 (326)
Q Consensus 137 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah-~l~~~ 215 (326)
.++++.+..-. |-.|+.-.... .+ ...+++|+|+|||+|++.+... ..++++++||||||| ++++.
T Consensus 136 ~RVA~El~~~l---G~~VGY~vrf~---~~---~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~ 202 (1294)
T PRK11131 136 NRIAEELETEL---GGCVGYKVRFN---DQ---VSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNI 202 (1294)
T ss_pred HHHHHHHhhhh---cceeceeecCc---cc---cCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCcccccccc
Confidence 88888876522 22232221111 11 2346899999999999998754 448999999999999 57887
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+|... .+...++.. +..|+|+||||+. .+.|.+++.
T Consensus 203 DfLLg--~Lk~lL~~r----------------------pdlKvILmSATid-~e~fs~~F~ 238 (1294)
T PRK11131 203 DFILG--YLKELLPRR----------------------PDLKVIITSATID-PERFSRHFN 238 (1294)
T ss_pred chHHH--HHHHhhhcC----------------------CCceEEEeeCCCC-HHHHHHHcC
Confidence 77543 233333311 4579999999995 567777764
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=133.46 Aligned_cols=96 Identities=27% Similarity=0.327 Sum_probs=73.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHH---HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 42 HPLLMKSIYRLGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 42 ~~~i~~~l~~~g~~~p~~~Q~~~i~~---~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
.+.+.+.+...|| .+++.|.+.+.. .+.+++++++.||||+|||++|++|++....
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-------------------- 290 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-------------------- 290 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------------------
Confidence 3467777888899 589999986653 3357899999999999999999999987653
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHH-HHHHHHcCCC--cEEEEEEcCC
Q 020452 119 APKGHLRALIITPTRELALQVTD-HLKEVAKGIN--VRVVPIVGGM 161 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~-~l~~~~~~~~--~~v~~~~g~~ 161 (326)
.+.+++|.+||++|..|+.. .+..+.+.++ ++++.+.|..
T Consensus 291 ---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 291 ---TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred ---CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 12389999999999999865 5665554444 6666666653
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-13 Score=134.37 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=105.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..++||.|||+++.+|++...+. +..+.|++|
T Consensus 79 lgm-~~ydVQliGgl~L-~~G~--IaEm~TGEGKTL~a~lp~~l~al~-----------------------g~~VhIvT~ 131 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL-DSNR--IAEMRTGEGKTLTATLPAYLNALT-----------------------GKGVHVITV 131 (908)
T ss_pred hCC-CcCchHHhcchHh-cCCc--cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEeC
Confidence 566 7788887665443 4444 889999999999999999876643 235999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc-c--cccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK-H--LVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~-~--~~~l~~l~~lViD 207 (326)
+..||.|.++++..+...+|++|.++.++.+..... -.-.+||++|||+.| +++++.+-. . ......+.+.|+|
T Consensus 132 ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvD 209 (908)
T PRK13107 132 NDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALID 209 (908)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeec
Confidence 999999999999999999999999999988864332 223689999999999 899876511 1 1123678999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 210 EvDsiL 215 (908)
T PRK13107 210 EVDSIL 215 (908)
T ss_pred chhhhc
Confidence 999887
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-12 Score=127.06 Aligned_cols=165 Identities=24% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHHh---cC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 40 RLHPLLMKSIYR-LGFKEPTPIQKACIPAAAH---QG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 40 ~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~---~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
+.+......+.+ ++| .-|+=|..||..+.. ++ .|=++||.-|-|||.+++=++...+
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---------------- 640 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---------------- 640 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh----------------
Confidence 344555555544 667 669999999988742 33 4789999999999999987777665
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~ 189 (326)
..|.++.|+|||.-||+|-++.|++.+..++++|..+..-.+..++...+. ...|||||| ..++.
T Consensus 641 -------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~ 709 (1139)
T COG1197 641 -------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLS 709 (1139)
T ss_pred -------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhC
Confidence 335699999999999999999999999999999999988888777665554 478999999 56665
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
.. ..++++.+|||||=|+.. -.-..-++.|+ .++-++-+|||.
T Consensus 710 kd----v~FkdLGLlIIDEEqRFG-----Vk~KEkLK~Lr------------------------~~VDvLTLSATP 752 (1139)
T COG1197 710 KD----VKFKDLGLLIIDEEQRFG-----VKHKEKLKELR------------------------ANVDVLTLSATP 752 (1139)
T ss_pred CC----cEEecCCeEEEechhhcC-----ccHHHHHHHHh------------------------ccCcEEEeeCCC
Confidence 44 789999999999999864 22233344444 568899999996
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=134.81 Aligned_cols=168 Identities=22% Similarity=0.221 Sum_probs=108.5
Q ss_pred CCCCCChHHHH--HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 52 LGFKEPTPIQK--ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 52 ~g~~~p~~~Q~--~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
..|...-|+.. ..|...+.+++.++++|+||||||.. +|.+-.- . ......++++.
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle--~------------------~~~~~~~I~~t 117 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLE--L------------------GRGSHGLIGHT 117 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHH--c------------------CCCCCceEecC
Confidence 45654455544 33444446777889999999999973 4543221 1 01112356677
Q ss_pred eCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 130 TPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
-|.|--|..++..+.+... ..|-.|+.-....+ + ...+..|.++|+|.|++.+... ..+.++++|||||
T Consensus 118 QPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDE 187 (1283)
T TIGR01967 118 QPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD---Q---VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDE 187 (1283)
T ss_pred CccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc---c---cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcC
Confidence 7988878777776665532 22333333222111 1 2346789999999999988654 4588999999999
Q ss_pred hh-HhhhCCCHHH-HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 209 AD-RMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 209 ah-~l~~~~~~~~-i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
+| ++++.++... +..++... +..|+|+||||+. .+.|.+++..
T Consensus 188 aHERsL~~D~LL~lLk~il~~r-------------------------pdLKlIlmSATld-~~~fa~~F~~ 232 (1283)
T TIGR01967 188 AHERSLNIDFLLGYLKQLLPRR-------------------------PDLKIIITSATID-PERFSRHFNN 232 (1283)
T ss_pred cchhhccchhHHHHHHHHHhhC-------------------------CCCeEEEEeCCcC-HHHHHHHhcC
Confidence 99 5888777544 44444332 4579999999995 5678888753
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=130.31 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=99.4
Q ss_pred CChHHHHHHHHHHHhc---------CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 56 EPTPIQKACIPAAAHQ---------GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~---------g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
-++.+|..++..++.. .+..+++.+||||||++.+..+...+ .. ...+++
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--------------------~~~~~v 296 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--------------------LKNPKV 296 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--------------------cCCCeE
Confidence 3788999999776322 35789999999999998766554333 21 235689
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccc-cCCCeeEE
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLV-ELHTLSFF 204 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~-~l~~l~~l 204 (326)
|||+|+.+|..|+.+.+..+.... ..+..+.......+. ....|+|+|.++|...+........ ...++ +|
T Consensus 297 l~lvdR~~L~~Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~-lv 369 (667)
T TIGR00348 297 FFVVDRRELDYQLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV-VV 369 (667)
T ss_pred EEEECcHHHHHHHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE-EE
Confidence 999999999999999999885311 111122333333333 2468999999999764432110001 11122 89
Q ss_pred eecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 205 ViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|+||||+.....+. ..+...+| +...++||||.-
T Consensus 370 IvDEaHrs~~~~~~---~~l~~~~p-------------------------~a~~lGfTaTP~ 403 (667)
T TIGR00348 370 IFDEAHRSQYGELA---KNLKKALK-------------------------NASFFGFTGTPI 403 (667)
T ss_pred EEEcCccccchHHH---HHHHhhCC-------------------------CCcEEEEeCCCc
Confidence 99999986532222 22224454 468999999995
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=130.13 Aligned_cols=88 Identities=25% Similarity=0.417 Sum_probs=69.4
Q ss_pred HHHCCCCCChHHHHHH---HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 49 IYRLGFKEPTPIQKAC---IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~---i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
+.-.|| .+++-|.+. +...+.++..+++.|+||+|||++|++|++... .+.+
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------------------~~~~ 293 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------------------DQRQ 293 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------------------CCCc
Confidence 333567 789999994 444456788999999999999999999988643 1348
Q ss_pred EEEEeCcHHHHHHH-HHHHHHHHcCCCcEEEEEEcCC
Q 020452 126 ALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGM 161 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~-~~~l~~~~~~~~~~v~~~~g~~ 161 (326)
+||++||++|++|+ .+.+..+.+.+++++..+.|+.
T Consensus 294 vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~ 330 (820)
T PRK07246 294 IIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQ 330 (820)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence 99999999999999 5778777777777777776654
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-12 Score=123.82 Aligned_cols=70 Identities=29% Similarity=0.255 Sum_probs=55.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH-
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA- 147 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~- 147 (326)
+.+++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+.
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------------------~~~rvlIstpT~~Lq~Ql~~~l~~l~~ 71 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------------------PDQKIAIAVPTLALMGQLWSELERLTA 71 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCceEEEECCcHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999876421 13489999999999999999988887
Q ss_pred cC--CCcEEEEEEc
Q 020452 148 KG--INVRVVPIVG 159 (326)
Q Consensus 148 ~~--~~~~v~~~~g 159 (326)
+. .++++..+.|
T Consensus 72 ~~l~~~i~~~~lkG 85 (636)
T TIGR03117 72 EGLAGPVQAGFFPG 85 (636)
T ss_pred hhcCCCeeEEEEEC
Confidence 32 2445554443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=123.63 Aligned_cols=152 Identities=22% Similarity=0.303 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+++-|+.+...+..+ .+..++.+.||||||.+|+-.|-..+.. |.++|+|+|-
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----------------------GkqvLvLVPE 254 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----------------------GKQVLVLVPE 254 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----------------------CCEEEEEecc
Confidence 5688999999888544 2678999999999999997666555522 4589999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
++|..|+.+.++..+ +.++..++++.+..+..+.|. ....|+|||-..+ +..|+++.++|+||
T Consensus 255 I~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDE 321 (730)
T COG1198 255 IALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDE 321 (730)
T ss_pred ccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEec
Confidence 999999999999885 478889999998877666554 4789999996655 25678999999999
Q ss_pred hhHhh---hCCC---HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 209 ADRMI---ENGH---FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 209 ah~l~---~~~~---~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
=|.-. +.+. -.++....... .++++|+-|||.+..
T Consensus 322 EHD~sYKq~~~prYhARdvA~~Ra~~-------------------------~~~pvvLgSATPSLE 362 (730)
T COG1198 322 EHDSSYKQEDGPRYHARDVAVLRAKK-------------------------ENAPVVLGSATPSLE 362 (730)
T ss_pred cccccccCCcCCCcCHHHHHHHHHHH-------------------------hCCCEEEecCCCCHH
Confidence 99543 1111 23444444333 568999999999844
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-11 Score=117.31 Aligned_cols=145 Identities=24% Similarity=0.329 Sum_probs=103.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|| .|...|+.....++ .|+++-+.||||.|||...++..+... ..+.+++||+|
T Consensus 79 ~G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a-----------------------~kgkr~yii~P 133 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLA-----------------------KKGKRVYIIVP 133 (1187)
T ss_pred hCC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHH-----------------------hcCCeEEEEec
Confidence 566 99999998888885 899999999999999965544333322 12459999999
Q ss_pred cHHHHHHHHHHHHHHHcCCC-cEEEE-EEcCCCHHHHH----HHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 132 TRELALQVTDHLKEVAKGIN-VRVVP-IVGGMSTEKQE----RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~-~~v~~-~~g~~~~~~~~----~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
|..|+.|+++.++++....+ ..+.. .++........ +..+.+.||+|+|...|...+..- .. -++++++
T Consensus 134 T~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~-~kFdfif 208 (1187)
T COG1110 134 TTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SK-LKFDFIF 208 (1187)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cc-cCCCEEE
Confidence 99999999999999987665 33333 55654544322 223347899999998887666432 11 3588999
Q ss_pred ecchhHhhhCCCHHHHHHHHHhC
Q 020452 206 LDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~~il~~l 228 (326)
+|++|.++..+ ..+.+++..+
T Consensus 209 VDDVDA~Lkas--kNvDriL~Ll 229 (1187)
T COG1110 209 VDDVDAILKAS--KNVDRLLRLL 229 (1187)
T ss_pred EccHHHHHhcc--ccHHHHHHHc
Confidence 99999998654 3444444443
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=104.64 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+.| .|+|.|.+.+..+ +.+|+++++.||||+|||++|+.|++..+...... ..+.+++|
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----------------~~~~kvi~ 66 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----------------IQKIKLIY 66 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----------------ccccceeE
Confidence 456 5699999955442 35789999999999999999999998876432110 02236888
Q ss_pred EeCcHHHHHHHHHHHHHH
Q 020452 129 ITPTRELALQVTDHLKEV 146 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~ 146 (326)
.++|..+..|....+++.
T Consensus 67 ~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 67 LSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EeccHHHHHHHHHHHHhc
Confidence 888888877776666554
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=104.64 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+.| .|+|.|.+.+..+ +.+|+++++.||||+|||++|+.|++..+...... ..+.+++|
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----------------~~~~kvi~ 66 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----------------IQKIKLIY 66 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----------------ccccceeE
Confidence 456 5699999955442 35789999999999999999999998876432110 02236888
Q ss_pred EeCcHHHHHHHHHHHHHH
Q 020452 129 ITPTRELALQVTDHLKEV 146 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~ 146 (326)
.++|..+..|....+++.
T Consensus 67 ~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 67 LSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EeccHHHHHHHHHHHHhc
Confidence 888888877776666554
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-11 Score=109.76 Aligned_cols=210 Identities=19% Similarity=0.255 Sum_probs=149.9
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCC-CchH--HHHHHHHHHHHHHHHHHhhhhhhhh--------hhhhhhhcCCCCC
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAET-GSGK--TLAFGLPIMQRLLEEREKAGKMLEE--------KGEEAEKYAPKGH 123 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apT-GsGK--T~~~~l~il~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 123 (326)
..+|+.|.+.+..+ .+.+|++..-.| +.|+ +..|++.+++++++.+....+.... +.+...+......
T Consensus 215 ~pltalQ~~L~~~m-~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 215 EPLTALQKELFKIM-FNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CcchHHHHHHHHHH-HhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 46899999999887 588998764333 3344 6689999999999887654322211 2223334444557
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCc---------EEEEEEcC----------------------CCHH--------
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINV---------RVVPIVGG----------------------MSTE-------- 164 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~---------~v~~~~g~----------------------~~~~-------- 164 (326)
|++||+||+|+-|..+...+..++.+.+- +...=+++ ++..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999999888543221 01001111 1100
Q ss_pred -HHHHHH--hcCCCEEEeCcHHHHHHHhcC---CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCC
Q 020452 165 -KQERLL--KARPELVVGTPGRLWELMSGG---EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQ 238 (326)
Q Consensus 165 -~~~~~~--~~~~~IlV~Tp~~l~~ll~~~---~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~ 238 (326)
...+.. ...+|||||.|-.|.-++.+. ......++.+.++|||.||.|+. +.++.+..++..|.......+..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhHHHHHHHHHHhhcCcccccCC
Confidence 000000 126799999999977666532 22345578899999999999884 45899999999999998999999
Q ss_pred cccccccccccccCCCCceEEEEeeecc
Q 020452 239 SEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+..+.+.|+...+.+..+|+++||+--.
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~ 480 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSH 480 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998764
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=117.64 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCCCCChHHHHHHHHH---HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~---~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
.|| .+++-|.+.... .+.+++.+++.||||+|||++|++|++...... +.++||
T Consensus 254 ~~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~----------------------~~~vvI 310 (928)
T PRK08074 254 PKY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK----------------------EEPVVI 310 (928)
T ss_pred CCC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc----------------------CCeEEE
Confidence 356 889999996544 346788999999999999999999998765322 348999
Q ss_pred EeCcHHHHHHHHH
Q 020452 129 ITPTRELALQVTD 141 (326)
Q Consensus 129 l~Pt~~L~~Q~~~ 141 (326)
-++|+.|.+|+..
T Consensus 311 sT~T~~LQ~Ql~~ 323 (928)
T PRK08074 311 STYTIQLQQQLLE 323 (928)
T ss_pred EcCCHHHHHHHHH
Confidence 9999999999866
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-12 Score=128.26 Aligned_cols=156 Identities=22% Similarity=0.375 Sum_probs=122.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
..+|+|.++++.+.+...++++.+|+|||||+++-++++.. ....++++++|..+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~------------------------~~~~~~vyi~p~~~i 1198 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP------------------------DTIGRAVYIAPLEEI 1198 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC------------------------ccceEEEEecchHHH
Confidence 44899999999998888899999999999999998887761 224589999999999
Q ss_pred HHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+..+++.|..-+. ..|..+..+.|..+.+.. +....+|+|+||++ +++++ ....+++.|.||+|.+.+
T Consensus 1199 ~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~-~d~lq-------~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1199 ADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQ-WDLLQ-------SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred HHHHHHHHHHhhccccCceEEecCCccccchH---HhhhcceEEechhH-HHHHh-------hhhhcceEeeehhhhhcc
Confidence 9999888876554 467888888888776554 33457899999999 55553 356789999999998863
Q ss_pred CCCHHH------HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHH
Q 020452 215 NGHFRE------LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 271 (326)
Q Consensus 215 ~~~~~~------i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 271 (326)
.++.. +..+-.++. ++.+++.+|..++|..++
T Consensus 1268 -~~g~v~evi~S~r~ia~q~~------------------------k~ir~v~ls~~lana~d~ 1305 (1674)
T KOG0951|consen 1268 -VYGAVYEVICSMRYIASQLE------------------------KKIRVVALSSSLANARDL 1305 (1674)
T ss_pred -cCCceEEEEeeHHHHHHHHH------------------------hheeEEEeehhhccchhh
Confidence 22222 334444443 789999999999999887
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=116.39 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=103.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..+.||.|||+++.+|++-..+. |..+-+++|
T Consensus 79 lGm-~~ydVQliGg~~L-h~G~--iaEM~TGEGKTLvA~l~a~l~al~-----------------------G~~VhvvT~ 131 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL-HEGK--IAEMRTGEGKTLVGTLAVYLNALS-----------------------GKGVHVVTV 131 (913)
T ss_pred hCC-CcchhHHHhhhHh-ccCc--cccccCCCCChHHHHHHHHHHHHc-----------------------CCCEEEEeC
Confidence 675 7888888765444 4444 789999999999999999876543 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+..||.|-++.+..++..+|++|+++.++........... ++|++||..-| .++|+.+-. .......+.+.|||
T Consensus 132 ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVD 209 (913)
T PRK13103 132 NDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVID 209 (913)
T ss_pred CHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEec
Confidence 9999999999999999999999999998887665554443 89999999876 455543310 01123778999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 210 EvDsiL 215 (913)
T PRK13103 210 EVDSIL 215 (913)
T ss_pred hhhhee
Confidence 999886
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.9e-11 Score=115.28 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHHH---hcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 55 KEPTPIQKACIPAAA---HQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l---~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..|+.+|..||..+. ..| +.+++++.||+|||.++ +.++.++.+... ..|+|+|+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~--------------------~KRVLFLa 222 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW--------------------VKRVLFLA 222 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch--------------------hheeeEEe
Confidence 468999999997653 234 46899999999999998 456666655432 23899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC--cccccCCCeeEEeecc
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVLDE 208 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~--~~~~~l~~l~~lViDE 208 (326)
-+++|+.|.+..+..+..... .+..+.+.... ..++|.|+|...+...+.... ...+....++++|+||
T Consensus 223 DR~~Lv~QA~~af~~~~P~~~-~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDE 293 (875)
T COG4096 223 DRNALVDQAYGAFEDFLPFGT-KMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDE 293 (875)
T ss_pred chHHHHHHHHHHHHHhCCCcc-ceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEech
Confidence 999999999999888866422 22222221111 147899999999988876542 2233445599999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCC
Q 020452 209 ADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~ 229 (326)
||+-. +.....|+..+.
T Consensus 294 aHRgi----~~~~~~I~dYFd 310 (875)
T COG4096 294 AHRGI----YSEWSSILDYFD 310 (875)
T ss_pred hhhhH----HhhhHHHHHHHH
Confidence 99754 333335555543
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=97.62 Aligned_cols=145 Identities=23% Similarity=0.289 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+++.|+.+-..++ .+.+++++.|-||+|||... ...++..++. |.++.+..|.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~----------------------G~~vciASPR 153 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQ----------------------GGRVCIASPR 153 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhc----------------------CCeEEEecCc
Confidence 68999998765542 46789999999999999875 4445544432 6689999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
...|.+++.+++..+. +..+.+++|+....-. .+++|+|...|+..-. .++++|+||+|..
T Consensus 154 vDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~----------aFD~liIDEVDAF 214 (441)
T COG4098 154 VDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ----------AFDLLIIDEVDAF 214 (441)
T ss_pred ccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh----------hccEEEEeccccc
Confidence 9999999999999876 4567789988765322 6899999988765542 3689999999976
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
--.. -..++..++.-. +..--+|.+|||-+
T Consensus 215 P~~~-d~~L~~Av~~ar-----------------------k~~g~~IylTATp~ 244 (441)
T COG4098 215 PFSD-DQSLQYAVKKAR-----------------------KKEGATIYLTATPT 244 (441)
T ss_pred cccC-CHHHHHHHHHhh-----------------------cccCceEEEecCCh
Confidence 5221 223333332222 14567899999998
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=115.63 Aligned_cols=169 Identities=21% Similarity=0.172 Sum_probs=108.5
Q ss_pred CChHHHHHHHHHHHh--cCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAAH--QGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~--~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
...+.|..++..+.. ... .+++.||||+|||.+.+.++...+... .....+++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------------------~~~~~r~i~vlP~ 255 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------------------IKLKSRVIYVLPF 255 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------------------ccccceEEEEccH
Confidence 348899999987743 234 788999999999999999888776432 1235699999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH--------------HhcCCCEEEeCcHHHHHHHhcCCccc-cc
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL--------------LKARPELVVGTPGRLWELMSGGEKHL-VE 197 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~--------------~~~~~~IlV~Tp~~l~~ll~~~~~~~-~~ 197 (326)
+.+++++++.++......++.....+|.......... ...-..+.++||-............. ..
T Consensus 256 ~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (733)
T COG1203 256 RTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLA 335 (733)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHH
Confidence 9999999999999876554433323333322111100 00123455666655444222211111 00
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.-....+|+||+|.+.+......+..++..+.. .+..+|++|||+|
T Consensus 336 ~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~-----------------------~g~~ill~SATlP 381 (733)
T COG1203 336 LLLTSLVILDEVHLYADETMLAALLALLEALAE-----------------------AGVPVLLMSATLP 381 (733)
T ss_pred HHHhhchhhccHHhhcccchHHHHHHHHHHHHh-----------------------CCCCEEEEecCCC
Confidence 112468999999988766445556666655542 5688999999998
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=113.66 Aligned_cols=133 Identities=22% Similarity=0.339 Sum_probs=105.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|...--.+ ..|+ |....||+|||+++.+|++...+. |..+-+++|
T Consensus 77 ~g~-~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------------------G~~v~vvT~ 129 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT-----------------------GKGVHVVTV 129 (796)
T ss_pred hCC-CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc-----------------------CCCeEEEec
Confidence 677 8999999887554 5666 899999999999999998887654 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|.-||.|-++.+..++..+|++|+++.|+.......... .+||+.||...| .++|+.+. ........+.+.|+|
T Consensus 130 neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvD 207 (796)
T PRK12906 130 NEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVD 207 (796)
T ss_pred cHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeec
Confidence 999999999999999999999999999987776554443 589999999776 45555431 011123567899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 208 EvDSiL 213 (796)
T PRK12906 208 EVDSIL 213 (796)
T ss_pred cchhee
Confidence 999876
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-09 Score=93.25 Aligned_cols=134 Identities=23% Similarity=0.369 Sum_probs=98.6
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..|+ .|++.|..++-.+ ..|+ ++...||-|||++..+|+.-..+. |..+=|++
T Consensus 73 ~~g~-~p~~vQll~~l~L-~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------------------G~~V~vvT 125 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALAL-HKGR--LAEMKTGEGKTLIAALPAALNALQ-----------------------GKGVHVVT 125 (266)
T ss_dssp HTS-----HHHHHHHHHH-HTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------------------SS-EEEEE
T ss_pred HcCC-cccHHHHhhhhhc-ccce--eEEecCCCCcHHHHHHHHHHHHHh-----------------------cCCcEEEe
Confidence 4677 8999999998665 4555 899999999999998887766532 44789999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEee
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVL 206 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lVi 206 (326)
.+..||..=++.+..++..+|+++....++.......... .++|+.+|...+ .++++.... .......++++||
T Consensus 126 ~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~iv 203 (266)
T PF07517_consen 126 SNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIV 203 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEE
T ss_pred ccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEE
Confidence 9999999999999999999999999999988865544433 368999999887 455544311 1112467899999
Q ss_pred cchhHhh
Q 020452 207 DEADRMI 213 (326)
Q Consensus 207 DEah~l~ 213 (326)
||+|.++
T Consensus 204 DEvDs~L 210 (266)
T PF07517_consen 204 DEVDSIL 210 (266)
T ss_dssp CTHHHHT
T ss_pred eccceEE
Confidence 9999887
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=92.11 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=80.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|+-.++-..+|+|||.-.+.-++...+.. +.++|||.|||.++..+++.++..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------------------~~rvLvL~PTRvva~em~~aL~~~---- 56 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------------------RLRVLVLAPTRVVAEEMYEALKGL---- 56 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------------------T--EEEEESSHHHHHHHHHHTTTS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------------------cCeEEEecccHHHHHHHHHHHhcC----
Confidence 455668889999999988766666554433 458999999999999988887543
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
++++. ..-... ....+.-|=|.|...+...+.+. ....+.+++|+||||..-.. --.....+...-.
T Consensus 57 ~~~~~--t~~~~~-----~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~-sIA~rg~l~~~~~- 123 (148)
T PF07652_consen 57 PVRFH--TNARMR-----THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPT-SIAARGYLRELAE- 123 (148)
T ss_dssp SEEEE--STTSS---------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHH-HHHHHHHHHHHHH-
T ss_pred CcccC--ceeeec-----cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHH-HHhhheeHHHhhh-
Confidence 43332 111111 12234567788888888777653 44678999999999975322 1122222222111
Q ss_pred CCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
.....+|++|||.|...
T Consensus 124 ----------------------~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 124 ----------------------SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----------------------TTS-EEEEEESS-TT--
T ss_pred ----------------------ccCeeEEEEeCCCCCCC
Confidence 03468999999999654
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=103.20 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=84.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
.+..++....|+|||...+..+. .+.... ...+...+||+||. .+..|+.+.+..++....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~-----------------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~ 85 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEF-----------------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDS 85 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCC-----------------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-T
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhcc-----------------ccccccceeEeecc-chhhhhhhhhcccccccc
Confidence 35789999999999988766544 222210 00111249999999 888999999999986545
Q ss_pred cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCC
Q 020452 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231 (326)
Q Consensus 152 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~ 231 (326)
+++....|...............+++|+|.+.+...-.........--+.++||+||+|.+-+. .......+..+.
T Consensus 86 ~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-- 161 (299)
T PF00176_consen 86 LRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-- 161 (299)
T ss_dssp S-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC--
T ss_pred ccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccc--
Confidence 6776666665122222222346789999999987111110111122234899999999998432 223333343343
Q ss_pred CCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
....+++|||..
T Consensus 162 -----------------------~~~~~lLSgTP~ 173 (299)
T PF00176_consen 162 -----------------------ARYRWLLSGTPI 173 (299)
T ss_dssp -----------------------ECEEEEE-SS-S
T ss_pred -----------------------cceEEeeccccc
Confidence 467788999964
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-10 Score=108.63 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-...-.++ .|. ++...||.|||+++.+|++...+. |..+-+++|
T Consensus 75 lg~-r~ydvQlig~l~Ll-~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----------------------G~~VhvvT~ 127 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL-AGD--VIEMATGEGKTLAGAIAAAGYALQ-----------------------GRRVHVITV 127 (764)
T ss_pred cCC-CcchHHHHHHHHHh-CCC--cccccCCCCHHHHHHHHHHHHHHc-----------------------CCCeEEEcC
Confidence 677 89999999987764 554 779999999999999998877643 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+..||.|-++.+..++..+|++++++.++.......... .+||..+|..-+ .++|+.+-. .......+.+.|+|
T Consensus 128 NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVD 205 (764)
T PRK12326 128 NDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIID 205 (764)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeec
Confidence 999999999999999999999999999988766554444 589999998766 445543210 11223558899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 206 EvDSiL 211 (764)
T PRK12326 206 EADSVL 211 (764)
T ss_pred chhhhe
Confidence 999876
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.4e-12 Score=125.70 Aligned_cols=181 Identities=20% Similarity=0.254 Sum_probs=140.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
...|.|.+.+...+.-..++++-+|||+|||.+|.+.+...+.. ..+.+++|++|..+|
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~---------------------~p~~kvvyIap~kal 985 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY---------------------YPGSKVVYIAPDKAL 985 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc---------------------CCCccEEEEcCCchh
Confidence 55778888876666566789999999999999999888776532 334699999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+..-.+.+.......|+++..+.|+...+.. -...++++|+||++.....+ .+.....+.++..+|+||.|++. .
T Consensus 986 vker~~Dw~~r~~~~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~R-sw~~r~~v~~v~~iv~de~hllg-~ 1060 (1230)
T KOG0952|consen 986 VKERSDDWSKRDELPGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISR-SWQTRKYVQSVSLIVLDEIHLLG-E 1060 (1230)
T ss_pred hcccccchhhhcccCCceeEeccCccCCChh---heecCceEEcccccccCccc-cccchhhhccccceeeccccccc-C
Confidence 9999999988776668999999998876522 12357999999999655544 34556778999999999999876 4
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 279 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 279 (326)
+++..++.+....+. +.+......|.+++|--+.|..|+++||..+.
T Consensus 1061 ~rgPVle~ivsr~n~-----------------~s~~t~~~vr~~glsta~~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1061 DRGPVLEVIVSRMNY-----------------ISSQTEEPVRYLGLSTALANANDLADWLNIKD 1107 (1230)
T ss_pred CCcceEEEEeecccc-----------------CccccCcchhhhhHhhhhhccHHHHHHhCCCC
Confidence 566666666555442 22333467899999999999999999998543
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-10 Score=108.62 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=101.2
Q ss_pred CCChHHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 55 KEPTPIQKACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~--dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
..++|+|++++..++-+|+ +-+++.|.|+|||++-+-+++.. ..+||++|.+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti--------------------------kK~clvLcts 354 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI--------------------------KKSCLVLCTS 354 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee--------------------------cccEEEEecC
Confidence 3579999999999976664 78999999999999876655432 2279999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-----cccccCCCeeEEeec
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLD 207 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-----~~~~~l~~l~~lViD 207 (326)
---+.|+..++..+..-.+-.++.++++... ....++.|+|+|..++..-=++.. .....-..+.++++|
T Consensus 355 ~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllD 429 (776)
T KOG1123|consen 355 AVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLD 429 (776)
T ss_pred ccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEee
Confidence 9999999999988866555567777765443 233578999999877632111110 001123458999999
Q ss_pred chhHhhhCCCHHHHHHHHHh
Q 020452 208 EADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 208 Eah~l~~~~~~~~i~~il~~ 227 (326)
|+|.+....|...+..+-..
T Consensus 430 EVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 430 EVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred hhccchHHHHHHHHHHHHHH
Confidence 99998876666666555443
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-09 Score=105.59 Aligned_cols=160 Identities=21% Similarity=0.211 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHH
Q 020452 60 IQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 139 (326)
Q Consensus 60 ~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 139 (326)
...+.+..+ .+.+-++++|+||||||...-..+++... ..+.++.+.-|.|--|..+
T Consensus 54 ~~~~i~~ai-~~~~vvii~getGsGKTTqlP~~lle~g~----------------------~~~g~I~~tQPRRlAArsv 110 (845)
T COG1643 54 VRDEILKAI-EQNQVVIIVGETGSGKTTQLPQFLLEEGL----------------------GIAGKIGCTQPRRLAARSV 110 (845)
T ss_pred HHHHHHHHH-HhCCEEEEeCCCCCChHHHHHHHHHhhhc----------------------ccCCeEEecCchHHHHHHH
Confidence 334444444 67788999999999999654333333221 2344788888999878888
Q ss_pred HHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-hhhCCC
Q 020452 140 TDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH 217 (326)
Q Consensus 140 ~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~ 217 (326)
++.+.+-+. ..|-.|+.-.-..+. ...+..|-+.|-|.|+..+.+. ..++.++++|+||+|. -++..+
T Consensus 111 A~RvAeel~~~~G~~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDi 180 (845)
T COG1643 111 AERVAEELGEKLGETVGYSIRFESK------VSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDI 180 (845)
T ss_pred HHHHHHHhCCCcCceeeEEEEeecc------CCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHH
Confidence 777766543 345455544332221 1234679999999999999765 5689999999999993 333333
Q ss_pred H-HHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 218 F-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 218 ~-~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
. ..+..++...+ ...++|++|||+- .+.|.+++..
T Consensus 181 lLgllk~~~~~rr------------------------~DLKiIimSATld-~~rfs~~f~~ 216 (845)
T COG1643 181 LLGLLKDLLARRR------------------------DDLKLIIMSATLD-AERFSAYFGN 216 (845)
T ss_pred HHHHHHHHHhhcC------------------------CCceEEEEecccC-HHHHHHHcCC
Confidence 2 23334444444 5689999999995 6788888874
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=4e-09 Score=108.46 Aligned_cols=131 Identities=23% Similarity=0.202 Sum_probs=84.1
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.|.|||..+...++.. ...+++.-..|.|||+-+.+.+...+... ...++|||||. .
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---------------------~~~rvLIVvP~-s 209 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---------------------RAERVLILVPE-T 209 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---------------------CCCcEEEEcCH-H
Confidence 5899999998776432 34789999999999998866555544322 12379999997 7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH--HHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER--LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~--~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
|+.|+...+...+ ++.+..+.++........ ......+++|++.+.+...-.. .....-..++++|+||||++
T Consensus 210 L~~QW~~El~~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~--~~~l~~~~wdlvIvDEAH~l 284 (956)
T PRK04914 210 LQHQWLVEMLRRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQR--LEQALAAEWDLLVVDEAHHL 284 (956)
T ss_pred HHHHHHHHHHHHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHH--HHHHhhcCCCEEEEechhhh
Confidence 9999988886543 455554444332211000 1112467999998776431100 00011246899999999998
Q ss_pred h
Q 020452 213 I 213 (326)
Q Consensus 213 ~ 213 (326)
-
T Consensus 285 k 285 (956)
T PRK04914 285 V 285 (956)
T ss_pred c
Confidence 6
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.4e-09 Score=103.77 Aligned_cols=65 Identities=31% Similarity=0.346 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHHHH---Hhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 53 GFKEPTPIQKACIPAA---AHQ-----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~---l~~-----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
|| .+++-|.+....+ +.+ ++.+++.||||+|||++|++|++...... +-
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~----------------------~k 79 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE----------------------KK 79 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc----------------------CC
Confidence 66 7899999966554 334 36789999999999999999998765432 33
Q ss_pred EEEEEeCcHHHHHHHH
Q 020452 125 RALIITPTRELALQVT 140 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~ 140 (326)
++||-+.|++|-+|+.
T Consensus 80 ~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 80 KLVISTATVALQEQLV 95 (697)
T ss_pred eEEEEcCCHHHHHHHH
Confidence 7999999999999975
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-08 Score=103.97 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=95.0
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+.+||...+.-++ .+|.+.|+.-..|.|||+..+.. +..+...+ +....+|||||.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~-------------------~~~gp~LIVvP~ 228 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR-------------------GITGPHMVVAPK 228 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc-------------------CCCCCEEEEeCh
Confidence 68999999987653 36788999999999999876443 33332211 112368999996
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH---HHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
++..++.+.+.+++. .+++..++|......... ......+|+|+|++.+...... ..--.+++||+|||
T Consensus 229 -SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEA 300 (1033)
T PLN03142 229 -STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEA 300 (1033)
T ss_pred -HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCc
Confidence 567889999998875 456677777543322211 1123578999999987653321 11234789999999
Q ss_pred hHhhhCCCHHHHHHHHHhCC
Q 020452 210 DRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~ 229 (326)
|++-+. ...+...+..+.
T Consensus 301 HrIKN~--~Sklskalr~L~ 318 (1033)
T PLN03142 301 HRIKNE--NSLLSKTMRLFS 318 (1033)
T ss_pred cccCCH--HHHHHHHHHHhh
Confidence 998542 334455555554
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=100.53 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
...+...+..+ ++.+-+++.|.||+|||.-.---+++..... +...++++.-|.|--|-
T Consensus 175 ~~~r~~Il~~i-~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~--------------------~~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 175 YKMRDTILDAI-EENQVVVISGETGCGKTTQVPQFILDEAIES--------------------GAACNIICTQPRRISAI 233 (924)
T ss_pred HHHHHHHHHHH-HhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------------------CCCCeEEecCCchHHHH
Confidence 56677777776 6888999999999999976555566554433 13557888889987777
Q ss_pred HHHHHHHH-HHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh-hhC
Q 020452 138 QVTDHLKE-VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM-IEN 215 (326)
Q Consensus 138 Q~~~~l~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l-~~~ 215 (326)
.+++++.. .....|-.|+.-.+.... ......++.||.|.|++.+... ..+..+.++|+||+|.= .+.
T Consensus 234 svAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~ 303 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINT 303 (924)
T ss_pred HHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCc
Confidence 77776543 333345445444433222 1123579999999999999763 66889999999999943 244
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhccccc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 281 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~ 281 (326)
.|.-.+.+.+-..+ +..++|+||||+- .+.|.+++...+.-
T Consensus 304 DflLi~lk~lL~~~------------------------p~LkvILMSAT~d-ae~fs~YF~~~pvi 344 (924)
T KOG0920|consen 304 DFLLILLKDLLPRN------------------------PDLKVILMSATLD-AELFSDYFGGCPVI 344 (924)
T ss_pred ccHHHHHHHHhhhC------------------------CCceEEEeeeecc-hHHHHHHhCCCceE
Confidence 44333333322222 6799999999996 77888888744333
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=104.84 Aligned_cols=133 Identities=22% Similarity=0.283 Sum_probs=101.9
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-...-.+ . +.-++.+.||.|||+++.+|+.-..+. |..|-|+++
T Consensus 73 lG~-r~ydvQlig~l~L-~--~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------------------G~~VhVvT~ 125 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL-N--DGKIAEMKTGEGKTLVATLPAYLNALT-----------------------GKGVHIVTV 125 (870)
T ss_pred hCC-CCCchHhhhhHhh-c--CCccccccCCCCchHHHHHHHHHHHhc-----------------------CCceEEEeC
Confidence 677 6889998876443 3 456889999999999999998654432 346899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+..||.+-++++..+...+|+.|+++.++.+........ .+||..+|..-+ .++|+..-. .......+.+.|+|
T Consensus 126 NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVD 203 (870)
T CHL00122 126 NDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIID 203 (870)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeee
Confidence 999999999999999999999999998888776554443 489999999755 355543210 11124568899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 204 EvDSiL 209 (870)
T CHL00122 204 EVDSIL 209 (870)
T ss_pred cchhhe
Confidence 999887
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=102.39 Aligned_cols=133 Identities=23% Similarity=0.303 Sum_probs=102.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |..+.||-|||+++.+|++-..+. |..+-|+++
T Consensus 82 lG~-r~ydVQliGgl~L-h~G~--IAEM~TGEGKTL~atlpaylnAL~-----------------------GkgVhVVTv 134 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL-HEGQ--IAEMKTGEGKTLVATLPSYLNALT-----------------------GKGVHVVTV 134 (939)
T ss_pred hCC-CcchhHHHhhhhh-cCCc--eeeecCCCChhHHHHHHHHHHhhc-----------------------CCCeEEEeC
Confidence 666 7888888776444 4444 889999999999999998876543 336899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
+..||..=++++..+...+|++|+++.++......... -.+||++||+..| .++|+.+- ........+.+.|||
T Consensus 135 NdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVD 212 (939)
T PRK12902 135 NDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVID 212 (939)
T ss_pred CHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEe
Confidence 99999999999999999999999999887766544433 3689999999887 34443221 111234678899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 213 EvDSIL 218 (939)
T PRK12902 213 EVDSIL 218 (939)
T ss_pred ccccee
Confidence 999876
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=93.69 Aligned_cols=147 Identities=16% Similarity=0.253 Sum_probs=110.8
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-Cc----EEEEEEc---------------CCCHHHHHHHHh-------
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGI-NV----RVVPIVG---------------GMSTEKQERLLK------- 171 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~----~v~~~~g---------------~~~~~~~~~~~~------- 171 (326)
..-..|++|||+|+|..|.++.+.+.+++... .+ +...=+| +....+......
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~F 112 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCF 112 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceE
Confidence 33456899999999999999999988876541 00 0000011 001111111111
Q ss_pred -----------------cCCCEEEeCcHHHHHHHhc---CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCC
Q 020452 172 -----------------ARPELVVGTPGRLWELMSG---GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231 (326)
Q Consensus 172 -----------------~~~~IlV~Tp~~l~~ll~~---~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~ 231 (326)
.++|||||+|=.|...+.. .......|+++.++|+|.||.|+ ++.++.+..+++.|+..
T Consensus 113 rlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~ 191 (442)
T PF06862_consen 113 RLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQ 191 (442)
T ss_pred EEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccC
Confidence 1679999999999888864 23345668999999999999887 56799999999999999
Q ss_pred CCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
....+..+..+.+.|+..++++.-+|+|++|+...
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~ 226 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT 226 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCC
Confidence 98999999999999999999999999999999986
|
; GO: 0005634 nucleus |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=99.58 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=97.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK----DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~----dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
-+|+.+.. .++...+.-..=.+|+|+|+.|+...+ +|- .-=+.+..|+|||++.+- |.+.+..
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~-~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~---------- 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAK-EGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA---------- 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHH-hhcccccCCcEEEecCCCccchHHH-HHHHHhh----------
Confidence 46777766 455555655555689999999999875 321 122344569999999754 4444422
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHH--------------------HH--
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK--------------------QE-- 167 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~--------------------~~-- 167 (326)
.++|+|+|+.+|..|..+.+..-.. ++++...++++..... ..
T Consensus 207 --------------~~iL~LvPSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~ 271 (1518)
T COG4889 207 --------------ARILFLVPSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE 271 (1518)
T ss_pred --------------hheEeecchHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHH
Confidence 2899999999999999888866432 3555555555432211 00
Q ss_pred ---HHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh
Q 020452 168 ---RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 168 ---~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
+....+--|+.+|.+.+...-.... ..+..++++|+||||+-.
T Consensus 272 ~~~~~k~~~~~vvFsTYQSl~~i~eAQe---~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 272 MEHRQKANGLTVVFSTYQSLPRIKEAQE---AGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHhhccCCcEEEEEcccchHHHHHHHH---cCCCCccEEEecchhccc
Confidence 1111244689999988866554322 557889999999999865
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-08 Score=98.92 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=53.9
Q ss_pred CCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 52 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+.|..++|.|.+.+..+ +.+++++++.+|||+|||++.+.|++....... ..++++|
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------------------~~~kIiy 65 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------------------EVRKIIY 65 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------------------ccccEEE
Confidence 46767799999887654 357899999999999999999999998654321 1235666
Q ss_pred EeCcHHHHHHHHHHHHH
Q 020452 129 ITPTRELALQVTDHLKE 145 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~ 145 (326)
.+.|+.-..|+.+.++.
T Consensus 66 ~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 66 ASRTHSQLEQATEELRK 82 (705)
T ss_pred EcccchHHHHHHHHHHh
Confidence 66666666666666655
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=95.47 Aligned_cols=146 Identities=20% Similarity=0.272 Sum_probs=86.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHH-----HHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK-----EVA 147 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~-----~~~ 147 (326)
.++.+.++||||||.+|+-.|++.... .+..+.||+||+.+.-+.+...+. ..+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---------------------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF 118 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---------------------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHF 118 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---------------------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHH
Confidence 478999999999999998877765422 234589999999998888776655 222
Q ss_pred c----CCCcEEEEEEcCC-------C-HHHHHHHHhc------CCCEEEeCcHHHHHHHh----------cCC-cccccC
Q 020452 148 K----GINVRVVPIVGGM-------S-TEKQERLLKA------RPELVVGTPGRLWELMS----------GGE-KHLVEL 198 (326)
Q Consensus 148 ~----~~~~~v~~~~g~~-------~-~~~~~~~~~~------~~~IlV~Tp~~l~~ll~----------~~~-~~~~~l 198 (326)
. ...+....+.++. . .......... ..+|+|.|-+.|..-.. .+. .....+
T Consensus 119 ~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i 198 (986)
T PRK15483 119 SQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDAL 198 (986)
T ss_pred HHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHH
Confidence 2 1223444444332 1 1111111111 47899999998854211 000 111112
Q ss_pred CCe-eEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 199 HTL-SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 199 ~~l-~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
... -.||+||.|++-.. ...+..| ..+. +.-++.+|||.+.
T Consensus 199 ~~~~PivIiDEPh~~~~~--~k~~~~i-~~ln-------------------------pl~~lrysAT~~~ 240 (986)
T PRK15483 199 AATRPVVIIDEPHRFPRD--NKFYQAI-EALK-------------------------PQMIIRFGATFPD 240 (986)
T ss_pred HhCCCEEEEECCCCCCcc--hHHHHHH-HhcC-------------------------cccEEEEeeecCC
Confidence 221 36899999998542 2234444 3333 2236779999986
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=94.67 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=95.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~ 155 (326)
+..+.+|||||..|+-.+-..+.. |.++||++|...|+.|+.+.++..+. +..+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~-----------------------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~ 218 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA-----------------------GRGALVVVPDQRDVDRLEAALRALLG--AGDVA 218 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc-----------------------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEE
Confidence 334446999999997766555422 44899999999999999999998754 25688
Q ss_pred EEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh---hCCCH---HHHHHHH
Q 020452 156 PIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI---ENGHF---RELQSII 225 (326)
Q Consensus 156 ~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~---~~~~~---~~i~~il 225 (326)
.++++.+..+..+.+. ....|+|||-..+ +..+.++.+||+||=|.-. +.+.+ .++....
T Consensus 219 ~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~R 288 (665)
T PRK14873 219 VLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLR 288 (665)
T ss_pred EECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHH
Confidence 8999988776655443 3578999996554 2567889999999998443 11112 3333333
Q ss_pred HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
... .+..+|+.|||.+..
T Consensus 289 a~~-------------------------~~~~lvLgSaTPSle 306 (665)
T PRK14873 289 AHQ-------------------------HGCALLIGGHARTAE 306 (665)
T ss_pred HHH-------------------------cCCcEEEECCCCCHH
Confidence 332 568999999999844
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=96.73 Aligned_cols=165 Identities=25% Similarity=0.247 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHh-------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 56 EPTPIQKACIPAAAH-------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~-------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
.-..||-+|+..+.. .|--++--|.||+|||++=.=.+ ..+.. ...+.|..|
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd--------------------~~~g~Rfsi 466 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD--------------------DKQGARFAI 466 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC--------------------CCCCceEEE
Confidence 446799999987632 12234556899999998853322 22211 134567777
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH-----------------------------------------
Q 020452 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE----------------------------------------- 167 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~----------------------------------------- 167 (326)
..-.|.|..|.-+.+++.+.-.+-...+++|+....+..
T Consensus 467 ALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~ 546 (1110)
T TIGR02562 467 ALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIE 546 (1110)
T ss_pred EccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchh
Confidence 777777777777777776543334455555543221111
Q ss_pred --HHHhc--------CCCEEEeCcHHHHHHHh--cCCccc---ccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCC
Q 020452 168 --RLLKA--------RPELVVGTPGRLWELMS--GGEKHL---VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 232 (326)
Q Consensus 168 --~~~~~--------~~~IlV~Tp~~l~~ll~--~~~~~~---~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~ 232 (326)
..+.. ...|+|||++.++-... ++.... ..+. -+.|||||+|.+-. .....+..++..+..
T Consensus 547 l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaYD~-~~~~~L~rlL~w~~~-- 622 (1110)
T TIGR02562 547 LLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDYEP-EDLPALLRLVQLAGL-- 622 (1110)
T ss_pred hhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccCCH-HHHHHHHHHHHHHHH--
Confidence 00100 34699999999987652 211111 1121 25799999997643 223445555553331
Q ss_pred CCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 233 GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+..++++|||+|
T Consensus 623 ---------------------lG~~VlLmSATLP 635 (1110)
T TIGR02562 623 ---------------------LGSRVLLSSATLP 635 (1110)
T ss_pred ---------------------cCCCEEEEeCCCC
Confidence 4588999999998
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-07 Score=91.70 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=102.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|-..--.+ +.|+ |....||-|||+++.+|++-..+. |..+-|++.
T Consensus 75 lG~-r~ydVQliGglvL-h~G~--IAEMkTGEGKTLvAtLpayLnAL~-----------------------GkgVhVVTv 127 (925)
T PRK12903 75 LGK-RPYDVQIIGGIIL-DLGS--VAEMKTGEGKTITSIAPVYLNALT-----------------------GKGVIVSTV 127 (925)
T ss_pred hCC-CcCchHHHHHHHH-hcCC--eeeecCCCCccHHHHHHHHHHHhc-----------------------CCceEEEec
Confidence 677 8899998887554 4554 789999999999999998765543 336788899
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+-.||..=++++..+...+|++|++...+.......... .+||..||..-| +++|+.+.. .......+.+.|+|
T Consensus 128 NdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVD 205 (925)
T PRK12903 128 NEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLID 205 (925)
T ss_pred chhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeec
Confidence 999999999999999999999999998877766554443 589999998766 556654311 11224568899999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 206 EVDSIL 211 (925)
T PRK12903 206 EVDSIL 211 (925)
T ss_pred cchhee
Confidence 999876
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=85.27 Aligned_cols=162 Identities=20% Similarity=0.231 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHH
Q 020452 59 PIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138 (326)
Q Consensus 59 ~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q 138 (326)
.+-.+.+..+ ++.+-+++.|.||||||.- +| +.+.+. ... ...++-+.-|.|--|..
T Consensus 54 ~~r~~il~~v-e~nqvlIviGeTGsGKSTQ--ip--QyL~ea----------------G~~--~~g~I~~TQPRRVAavs 110 (674)
T KOG0922|consen 54 KYRDQILYAV-EDNQVLIVIGETGSGKSTQ--IP--QYLAEA----------------GFA--SSGKIACTQPRRVAAVS 110 (674)
T ss_pred HHHHHHHHHH-HHCCEEEEEcCCCCCcccc--Hh--HHHHhc----------------ccc--cCCcEEeecCchHHHHH
Confidence 3444555555 6788899999999999943 22 222211 111 12247778899977777
Q ss_pred HHHHHHHH-HcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCC
Q 020452 139 VTDHLKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217 (326)
Q Consensus 139 ~~~~l~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~ 217 (326)
++++...- ....|-.|+....-.+.. .....|.+.|-|.|++-+-.. ..++..+++|+||||.=. -.
T Consensus 111 lA~RVAeE~~~~lG~~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERs--l~ 178 (674)
T KOG0922|consen 111 LAKRVAEEMGCQLGEEVGYTIRFEDST------SKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERS--LH 178 (674)
T ss_pred HHHHHHHHhCCCcCceeeeEEEecccC------CCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhh--hH
Confidence 66665443 333455555433221111 123579999999998876543 568899999999999311 01
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 218 ~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
-+.+.-+++.+-+.. +..++|++|||+- .+.|.+++..
T Consensus 179 TDiLlGlLKki~~~R---------------------~~LklIimSATld-a~kfS~yF~~ 216 (674)
T KOG0922|consen 179 TDILLGLLKKILKKR---------------------PDLKLIIMSATLD-AEKFSEYFNN 216 (674)
T ss_pred HHHHHHHHHHHHhcC---------------------CCceEEEEeeeec-HHHHHHHhcC
Confidence 222233333322110 4579999999995 6677777654
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=89.14 Aligned_cols=141 Identities=22% Similarity=0.186 Sum_probs=94.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
+.-+|+--+|||||++.+..+-. +... ...+.++||+-.++|-.|+.+.+..+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~--------------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~ 332 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLEL--------------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN 332 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhc--------------------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh
Confidence 45799999999999986543332 2211 34679999999999999999999998664322
Q ss_pred EEEEEEcCCCHHHHHHHHhcC-CCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCC
Q 020452 153 RVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 231 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~-~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~ 231 (326)
.. ...+.....+.+... ..|+|||-++|-............-+++ .+|+||||+-- ++..-..+...++
T Consensus 333 ~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~i-vvI~DEaHRSQ---~G~~~~~~~~~~~-- 402 (962)
T COG0610 333 DP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNV-VVIIDEAHRSQ---YGELAKLLKKALK-- 402 (962)
T ss_pred cc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcE-EEEEechhhcc---ccHHHHHHHHHhc--
Confidence 11 344555566666644 4899999999988775531111222333 68999999753 3444444444443
Q ss_pred CCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 232 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+...++||.|.--
T Consensus 403 -----------------------~a~~~gFTGTPi~ 415 (962)
T COG0610 403 -----------------------KAIFIGFTGTPIF 415 (962)
T ss_pred -----------------------cceEEEeeCCccc
Confidence 4789999999853
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.4e-07 Score=76.91 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~d-vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
++++.|.+|+..++ +... .+|.||.|||||.+..- ++..+..... ......+.++|+++|+..
T Consensus 1 ~ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~--------------~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 1 KLNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK--------------SRSADRGKKILVVSPSNA 64 (236)
T ss_dssp ---HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHH-HHHHH---------------------HCCCSS-EEEEESSHH
T ss_pred CCCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHH-HHHHhccchh--------------hhhhhccccceeecCCch
Confidence 36889999998885 6666 89999999999965443 3333321100 001134558999999999
Q ss_pred HHHHHHHHHHH
Q 020452 135 LALQVTDHLKE 145 (326)
Q Consensus 135 L~~Q~~~~l~~ 145 (326)
-+.++.+.+.+
T Consensus 65 avd~~~~~l~~ 75 (236)
T PF13086_consen 65 AVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHHHh
Confidence 99999999887
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.3e-06 Score=82.34 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=103.8
Q ss_pred CChHHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 56 EPTPIQKACIPAAAH---------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~---------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.++|+|++.+.-+.. ...-.|+.-..|+|||+-.+.-+ ..+++.-+. ...---++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Isfl-wtlLrq~P~---------------~~~~~~k~ 301 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFI-WTLLRQFPQ---------------AKPLINKP 301 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHH-HHHHHhCcC---------------cccccccc
Confidence 679999999866532 11234566677999998875544 444433110 00111379
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH-H-HHHHHHh-----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST-E-KQERLLK-----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~-~-~~~~~~~-----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
|||+|. .|+.-+++++.++.....+....++|.... + .....+. -...|++.+.+.+.+.++. ....
T Consensus 302 lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~ 375 (776)
T KOG0390|consen 302 LVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLI 375 (776)
T ss_pred EEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcC
Confidence 999995 588999999999877556777778877664 1 1111111 1235778888888766643 4456
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+++||+||.|++-+. ...+...+..+. -.+-|++|.|+-
T Consensus 376 ~~glLVcDEGHrlkN~--~s~~~kaL~~l~-------------------------t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNS--DSLTLKALSSLK-------------------------TPRRVLLTGTPI 415 (776)
T ss_pred CCCeEEECCCCCccch--hhHHHHHHHhcC-------------------------CCceEEeeCCcc
Confidence 7899999999988543 234444555554 356677899985
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.8e-06 Score=79.59 Aligned_cols=144 Identities=21% Similarity=0.229 Sum_probs=95.9
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++++|.+.+.-+ ..+|-+.|+.-.-|-|||+-. +.++..+...+. ..| --||+||-
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~------------------~~G-PfLVi~P~ 226 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG------------------IPG-PFLVIAPK 226 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC------------------CCC-CeEEEeeH
Confidence 6889999887543 357889999999999999765 344444432211 122 35889998
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH-H--HhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER-L--LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~-~--~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
.-|. .+.+.++++++ ++++++++|+........ . .....+|+|+|.+..+.-- ....--.++++|||||
T Consensus 227 StL~-NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk-----~~lk~~~W~ylvIDEa 298 (971)
T KOG0385|consen 227 STLD-NWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK-----SFLKKFNWRYLVIDEA 298 (971)
T ss_pred hhHH-HHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH-----HHHhcCCceEEEechh
Confidence 7765 56777888866 578888999864332211 1 1236799999999875421 1122345899999999
Q ss_pred hHhhhCCCHHHHHHHHHhCC
Q 020452 210 DRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~ 229 (326)
|++=+. ...+..+++.+.
T Consensus 299 HRiKN~--~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 299 HRIKNE--KSKLSKILREFK 316 (971)
T ss_pred hhhcch--hhHHHHHHHHhc
Confidence 999644 344556677665
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.5e-06 Score=69.95 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
++++-|.+++..++.++. -.++.++.|+|||.+. ..+...+... +.++++++||..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------------------g~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------------------GKRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------------------T--EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------------------CCeEEEECCcHH
Confidence 368899999999876554 4677899999999653 3344433221 358999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-cccccCCCeeEEeecchhHhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-~~~~~l~~l~~lViDEah~l~ 213 (326)
.+..+.+.. ++. ..|-.+++....... .....+...++|||||+-.+.
T Consensus 58 Aa~~L~~~~-------~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~ 106 (196)
T PF13604_consen 58 AAKELREKT-------GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD 106 (196)
T ss_dssp HHHHHHHHH-------TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B
T ss_pred HHHHHHHhh-------Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC
Confidence 887755541 111 123333322221110 000114556799999998654
Q ss_pred hCCCHHHHHHHHHhCC
Q 020452 214 ENGHFRELQSIIDMLP 229 (326)
Q Consensus 214 ~~~~~~~i~~il~~l~ 229 (326)
...+..++..++
T Consensus 107 ----~~~~~~ll~~~~ 118 (196)
T PF13604_consen 107 ----SRQLARLLRLAK 118 (196)
T ss_dssp ----HHHHHHHHHHS-
T ss_pred ----HHHHHHHHHHHH
Confidence 456777777776
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-05 Score=73.60 Aligned_cols=190 Identities=17% Similarity=0.146 Sum_probs=104.2
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+.++.|+..+.++.-.+.+++.-=-.....+.+.+ .++.+.+-+++++.||||||.-.--..+......
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~-~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---------- 90 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFL-KLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---------- 90 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHH-HHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----------
Confidence 44888999999999999888743212233444444 4556889999999999999954211222222111
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
...+...-|.|--|.+++.+...-.. .+|-.|+....-.+.....-. +-.+|-++|++-.-
T Consensus 91 ------------~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~------Lky~tDgmLlrEam 152 (699)
T KOG0925|consen 91 ------------LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTL------LKYCTDGMLLREAM 152 (699)
T ss_pred ------------ccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHH------HHHhcchHHHHHHh
Confidence 12566777888888887766544321 122222111100000000000 01234444443222
Q ss_pred cCCcccccCCCeeEEeecchhHh-hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 190 GGEKHLVELHTLSFFVLDEADRM-IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l-~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+ ...+.+.+++|+||||.= +. -+.+.-+++..... ++...+|++|||+- .
T Consensus 153 s----~p~l~~y~viiLDeahERtlA---TDiLmGllk~v~~~---------------------rpdLk~vvmSatl~-a 203 (699)
T KOG0925|consen 153 S----DPLLGRYGVIILDEAHERTLA---TDILMGLLKEVVRN---------------------RPDLKLVVMSATLD-A 203 (699)
T ss_pred h----CcccccccEEEechhhhhhHH---HHHHHHHHHHHHhh---------------------CCCceEEEeecccc-h
Confidence 1 245788999999999932 21 12233333222211 15789999999995 4
Q ss_pred HHHHHHhhcc
Q 020452 269 ADFRKKLKHG 278 (326)
Q Consensus 269 ~~~~~~l~~~ 278 (326)
..|.+++...
T Consensus 204 ~Kfq~yf~n~ 213 (699)
T KOG0925|consen 204 EKFQRYFGNA 213 (699)
T ss_pred HHHHHHhCCC
Confidence 5566665543
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=72.14 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=106.4
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH---------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 37 ~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~---------~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
-.+.|++.++.. | .++..|-+++-.+.+ .+.-+++--.||.||-....--|++.+++.
T Consensus 24 y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 456777766542 2 468888888755421 134567777899999887766677766543
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
..++|++..+..|-.+..+.++.+... .+.+..+..-. .. ....-.-.||.+|...|..-
T Consensus 91 ---------------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~---~~~~~~~GvlF~TYs~L~~~ 150 (303)
T PF13872_consen 91 ---------------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG---DIIRLKEGVLFSTYSTLISE 150 (303)
T ss_pred ---------------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC---cCCCCCCCccchhHHHHHhH
Confidence 337999999999999999999988543 33333332210 00 00112346899998887655
Q ss_pred HhcCCcccccC---------CCeeEEeecchhHhhhCCC--------HHHHHHHHHhCCCCCCCCCCCcccccccccccc
Q 020452 188 MSGGEKHLVEL---------HTLSFFVLDEADRMIENGH--------FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250 (326)
Q Consensus 188 l~~~~~~~~~l---------~~l~~lViDEah~l~~~~~--------~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (326)
-..+......+ +.=.+|||||||.+-+... +..+..+-..||
T Consensus 151 ~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP--------------------- 209 (303)
T PF13872_consen 151 SQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP--------------------- 209 (303)
T ss_pred HhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC---------------------
Confidence 32111111111 1124799999998864422 234445555665
Q ss_pred cCCCCceEEEEeeecc
Q 020452 251 LQRKKRQTLVFSATIA 266 (326)
Q Consensus 251 ~~~~~~q~i~~SATl~ 266 (326)
+.+++.+|||-.
T Consensus 210 ----~ARvvY~SATga 221 (303)
T PF13872_consen 210 ----NARVVYASATGA 221 (303)
T ss_pred ----CCcEEEeccccc
Confidence 457999999985
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-06 Score=71.68 Aligned_cols=190 Identities=16% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
+...+..|..++..++ +..-+++.||.|||||+.++..+++.+... ..-+++|+-|..
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---------------------~~~kiii~Rp~v 59 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEG---------------------EYDKIIITRPPV 59 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTT---------------------S-SEEEEEE-S-
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhC---------------------CCcEEEEEecCC
Confidence 3456889999999985 777889999999999999999888887442 123788887876
Q ss_pred HHHHHHH-------HHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEee
Q 020452 134 ELALQVT-------DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206 (326)
Q Consensus 134 ~L~~Q~~-------~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lVi 206 (326)
+..+.+- +.+..+....--....+.+... ...+.....|-+..+.. ++. ..+++ .+||+
T Consensus 60 ~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~----iRG-----rt~~~-~~iIv 125 (205)
T PF02562_consen 60 EAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAF----IRG-----RTFDN-AFIIV 125 (205)
T ss_dssp -TT----SS---------TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGG----GTT-------B-S-EEEEE
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhh----hcC-----ccccc-eEEEE
Confidence 5311110 0000000000000000001111 11112233455544333 222 22443 79999
Q ss_pred cchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcccccccccc
Q 020452 207 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV 286 (326)
Q Consensus 207 DEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~ 286 (326)
|||..+. ...+..++.++. .+.++|++--.-- .|. . ..
T Consensus 126 DEaQN~t----~~~~k~ilTR~g------------------------~~skii~~GD~~Q--~D~---------~-~~-- 163 (205)
T PF02562_consen 126 DEAQNLT----PEELKMILTRIG------------------------EGSKIIITGDPSQ--IDL---------P-LD-- 163 (205)
T ss_dssp -SGGG------HHHHHHHHTTB-------------------------TT-EEEEEE------------------------
T ss_pred ecccCCC----HHHHHHHHcccC------------------------CCcEEEEecCcee--ecC---------C-CC--
Confidence 9998664 567888888887 5677777544321 111 1 00
Q ss_pred CccccHHHHHHHhCCccCcEEEecCChHHHHhhhhh
Q 020452 287 NGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEE 322 (326)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (326)
....+..+.+++.-.+.+.++.++.+..+.+.|.+
T Consensus 164 -~~nGl~~~~~~~~~~~~~~~i~l~~~d~vRs~l~~ 198 (205)
T PF02562_consen 164 -YNNGLTYAIERLKGEPGIGVIELTLEDIVRSPLAK 198 (205)
T ss_dssp -----THHHHHHTTT-TTEEEEE--GGG----HHHH
T ss_pred -CCchHHHHHHHhcCCCceEEEEEeCCceECcHHHH
Confidence 11233444555544577899999776666655544
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.9e-06 Score=86.36 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|-..--.+ +.|+ |..+.||-|||+++.+|++-..+.. ..+=|++.+-.|
T Consensus 138 ~~ydVQLiGgivL-h~G~--IAEM~TGEGKTLvatlp~yLnAL~G-----------------------~gVHvVTvNDYL 191 (1025)
T PRK12900 138 VPYDVQLIGGIVL-HSGK--ISEMATGEGKTLVSTLPTFLNALTG-----------------------RGVHVVTVNDYL 191 (1025)
T ss_pred cccchHHhhhHHh-hcCC--ccccCCCCCcchHhHHHHHHHHHcC-----------------------CCcEEEeechHh
Confidence 5677776665343 4554 7899999999999999998776543 246777888889
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeecchhH
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLDEADR 211 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViDEah~ 211 (326)
|..=++++..+...+|++|+++..+......... -.|||..||..-| .++|+.+.. .......+.+.||||+|.
T Consensus 192 A~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 192 AQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred hhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 9999999999999999999999776666544333 3689999998666 555544311 011235688999999997
Q ss_pred hh
Q 020452 212 MI 213 (326)
Q Consensus 212 l~ 213 (326)
++
T Consensus 270 vL 271 (1025)
T PRK12900 270 VL 271 (1025)
T ss_pred hh
Confidence 76
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-06 Score=83.25 Aligned_cols=75 Identities=31% Similarity=0.363 Sum_probs=60.7
Q ss_pred HHCCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 50 YRLGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
..+....|++.|.+.+..+ +.+++.+++.||||+|||++|++|++...... +.++
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----------------------~~~v 66 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----------------------GKKV 66 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----------------------CCcE
Confidence 3344459999999988554 44566799999999999999999999876543 2489
Q ss_pred EEEeCcHHHHHHHHHHHHHH
Q 020452 127 LIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~ 146 (326)
+|.++|+.|-.|+.+....+
T Consensus 67 iist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 67 IISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred EEECCCHHHHHHHHHhhcch
Confidence 99999999999988877664
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-05 Score=76.29 Aligned_cols=163 Identities=20% Similarity=0.180 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
....+.+.+..+ ...+-+++.+.||||||.-.. +.++.. .+ .....+-+.-|.|.-|
T Consensus 357 vf~~R~~ll~~i-r~n~vvvivgETGSGKTTQl~----QyL~ed----------------GY--~~~GmIGcTQPRRvAA 413 (1042)
T KOG0924|consen 357 VFACRDQLLSVI-RENQVVVIVGETGSGKTTQLA----QYLYED----------------GY--ADNGMIGCTQPRRVAA 413 (1042)
T ss_pred hHHHHHHHHHHH-hhCcEEEEEecCCCCchhhhH----HHHHhc----------------cc--ccCCeeeecCchHHHH
Confidence 355666666555 567778899999999996532 223222 11 1122455566999888
Q ss_pred HHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 137 LQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 137 ~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
..+++.+..-+. .+|-.|+....-.+. -.....|=..|-|.|+.-.-. ...|.....+|+||||.=.-
T Consensus 414 iSVAkrVa~EM~~~lG~~VGYsIRFEdv------T~~~T~IkymTDGiLLrEsL~----d~~L~kYSviImDEAHERsl- 482 (1042)
T KOG0924|consen 414 ISVAKRVAEEMGVTLGDTVGYSIRFEDV------TSEDTKIKYMTDGILLRESLK----DRDLDKYSVIIMDEAHERSL- 482 (1042)
T ss_pred HHHHHHHHHHhCCccccccceEEEeeec------CCCceeEEEeccchHHHHHhh----hhhhhheeEEEechhhhccc-
Confidence 888877665432 334344332211111 011345778898888653322 14578889999999994220
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
.-+.+.-++...-.. .....+|+.|||+- ...|.++++
T Consensus 483 -NtDilfGllk~~lar---------------------RrdlKliVtSATm~-a~kf~nfFg 520 (1042)
T KOG0924|consen 483 -NTDILFGLLKKVLAR---------------------RRDLKLIVTSATMD-AQKFSNFFG 520 (1042)
T ss_pred -chHHHHHHHHHHHHh---------------------hccceEEEeecccc-HHHHHHHhC
Confidence 112222222211100 04678999999994 778888887
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=79.48 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCChHHHHH------------HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 55 KEPTPIQKA------------CIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 55 ~~p~~~Q~~------------~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.+|..+|.. ....+ +..--+||||.||||||.- +| ++++...-+ . .....
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaI-n~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~-----------s-~~~~~- 304 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAI-NENPVVIICGETGSGKTTQ--VP--QFLYEAGFA-----------S-EQSSS- 304 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHh-hcCCeEEEecCCCCCcccc--ch--HHHHHcccC-----------C-ccCCC-
Confidence 456777753 23333 4445678899999999954 22 333322100 0 01111
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEE--EcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPI--VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~--~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+..+=|.-|.|--|-.++++...-+..++-.|... +.++ ......|-..|-|.|+.-|.+. +.|..
T Consensus 305 ~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~k 372 (1172)
T KOG0926|consen 305 PGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIEND----FLLTK 372 (1172)
T ss_pred CCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccc--------cCCCceeEEecchHHHHHHHHh----Hhhhh
Confidence 22455677888777776666554444345444432 3222 1234679999999999888764 66888
Q ss_pred eeEEeecchhH
Q 020452 201 LSFFVLDEADR 211 (326)
Q Consensus 201 l~~lViDEah~ 211 (326)
...+|+||||.
T Consensus 373 YSvIIlDEAHE 383 (1172)
T KOG0926|consen 373 YSVIILDEAHE 383 (1172)
T ss_pred ceeEEechhhh
Confidence 99999999994
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=74.89 Aligned_cols=159 Identities=24% Similarity=0.293 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
+++-.+.+.++ ...+-++|.|.||||||.- +| +.+... ....++.++=+.-|.|--|.
T Consensus 267 y~ykdell~av-~e~QVLiI~GeTGSGKTTQ--iP--QyL~Ea-----------------Gytk~gk~IgcTQPRRVAAm 324 (902)
T KOG0923|consen 267 YPYKDELLKAV-KEHQVLIIVGETGSGKTTQ--IP--QYLYEA-----------------GYTKGGKKIGCTQPRRVAAM 324 (902)
T ss_pred hhhHHHHHHHH-HhCcEEEEEcCCCCCcccc--cc--HHHHhc-----------------ccccCCceEeecCcchHHHH
Confidence 45555666666 5778889999999999953 33 222221 12233445777789998888
Q ss_pred HHHHHHHH-HHcCCCcEEEEEE--cCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-hh
Q 020452 138 QVTDHLKE-VAKGINVRVVPIV--GGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MI 213 (326)
Q Consensus 138 Q~~~~l~~-~~~~~~~~v~~~~--g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-l~ 213 (326)
.++.+..+ +.-.+|-.|+.-. .+... ...-|=+.|-|+|+.-+... .+|.+..++|+||||. -+
T Consensus 325 SVAaRVA~EMgvkLG~eVGYsIRFEdcTS--------ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL 392 (902)
T KOG0923|consen 325 SVAARVAEEMGVKLGHEVGYSIRFEDCTS--------EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTL 392 (902)
T ss_pred HHHHHHHHHhCcccccccceEEEeccccC--------cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhh
Confidence 87766544 3333443333211 11111 12346688999998766443 6789999999999993 22
Q ss_pred hCC-CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 214 ENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 214 ~~~-~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
... .+..+..|.. .+ +...+++.|||+- .+.|..++.
T Consensus 393 ~TDILfgLvKDIar-~R------------------------pdLKllIsSAT~D-AekFS~fFD 430 (902)
T KOG0923|consen 393 HTDILFGLVKDIAR-FR------------------------PDLKLLISSATMD-AEKFSAFFD 430 (902)
T ss_pred hhhHHHHHHHHHHh-hC------------------------CcceEEeeccccC-HHHHHHhcc
Confidence 111 1222333322 22 5789999999994 677777765
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=71.69 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=97.1
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+-|+|.+.+...++.|..+++.-.-|-|||+-++. |. ..++..+ -.||+||..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA-~yyraEw----------------------plliVcPAs- 251 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IA-RYYRAEW----------------------PLLIVCPAS- 251 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HH-HHHhhcC----------------------cEEEEecHH-
Confidence 3567999999988888999999999999999987643 32 2333322 378999964
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+-..+.+.+..++.... .+.++.++.+.... +-....|.|...+.+..+-.. ..-...+++|+||.|.+-+
T Consensus 252 vrftWa~al~r~lps~~-pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~ 322 (689)
T KOG1000|consen 252 VRFTWAKALNRFLPSIH-PIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKD 322 (689)
T ss_pred HhHHHHHHHHHhccccc-ceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhc
Confidence 55667778888766432 35555555443211 112246778887776443221 1123378999999998764
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.. -.....++..+. .-.++|++|.|.+
T Consensus 323 sk-tkr~Ka~~dllk------------------------~akhvILLSGTPa 349 (689)
T KOG1000|consen 323 SK-TKRTKAATDLLK------------------------VAKHVILLSGTPA 349 (689)
T ss_pred cc-hhhhhhhhhHHH------------------------HhhheEEecCCcc
Confidence 42 222333333333 3457888888875
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.4e-05 Score=76.52 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++.|..++..++.+...+++.||+|||||.+..-.+.+ +... +.++++++||..-
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~-~~~~----------------------g~~VLv~a~sn~A 213 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQ-LVKR----------------------GLRVLVTAPSNIA 213 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHH-HHHc----------------------CCCEEEEcCcHHH
Confidence 5689999999988644467899999999999766444433 3221 3489999999999
Q ss_pred HHHHHHHHHHH
Q 020452 136 ALQVTDHLKEV 146 (326)
Q Consensus 136 ~~Q~~~~l~~~ 146 (326)
+.++.+.+...
T Consensus 214 vd~l~e~l~~~ 224 (637)
T TIGR00376 214 VDNLLERLALC 224 (637)
T ss_pred HHHHHHHHHhC
Confidence 99988888763
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=77.16 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+.++|+..+.-+ ..++.--|+--.-|-|||.-.+ ..+..+.... .-...+|||||.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~-------------------k~~~paLIVCP~ 264 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSG-------------------KLTKPALIVCPA 264 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcc-------------------cccCceEEEccH
Confidence 4678999887543 3355667888899999996532 2222222110 001369999996
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH---------HHHHH----HHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMST---------EKQER----LLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~---------~~~~~----~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
. ++.|+..++..++. .++|..++|.... ..... ......+|+|+|.+.+... .....-.
T Consensus 265 T-ii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-----~d~l~~~ 336 (923)
T KOG0387|consen 265 T-IIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-----GDDLLGI 336 (923)
T ss_pred H-HHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-----Ccccccc
Confidence 5 78899999998876 4677777776542 11111 1122567999998776322 1112234
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.++++|+||.|++-+.. ..+......++
T Consensus 337 ~W~y~ILDEGH~IrNpn--s~islackki~ 364 (923)
T KOG0387|consen 337 LWDYVILDEGHRIRNPN--SKISLACKKIR 364 (923)
T ss_pred cccEEEecCcccccCCc--cHHHHHHHhcc
Confidence 57999999999997654 34444455554
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.4e-05 Score=75.84 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 020452 48 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127 (326)
Q Consensus 48 ~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (326)
.+-..|+..++.-|..|..+++ +..=.++++|+|+|||.+...-+++.+ +. +...+|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~-~~---------------------~~~~VL 458 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLA-RQ---------------------HAGPVL 458 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHH-Hh---------------------cCCceE
Confidence 3344677889999999999996 667779999999999988755444443 32 244799
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc
Q 020452 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVG 159 (326)
Q Consensus 128 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g 159 (326)
+.+|+.--+.|+++.+.+- |++|+.+..
T Consensus 459 vcApSNiAVDqLaeKIh~t----gLKVvRl~a 486 (935)
T KOG1802|consen 459 VCAPSNIAVDQLAEKIHKT----GLKVVRLCA 486 (935)
T ss_pred EEcccchhHHHHHHHHHhc----CceEeeeeh
Confidence 9999999999999888765 677766543
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=78.33 Aligned_cols=145 Identities=16% Similarity=0.229 Sum_probs=91.5
Q ss_pred CCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 53 GFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
|+ .+.++|.-.+.-+ ...+-+-|+.-.-|-|||.-. ++.+..+.+.. ..| .-|||
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g-------------------~~g-pHLVV 454 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG-------------------NPG-PHLVV 454 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC-------------------CCC-CcEEE
Confidence 44 4778888776443 345567799999999999543 44555543321 122 45889
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
||+..|- -+.+++.++++ .++|...+|........+... .+.+|+|+|......-- ..+.++.-.+++++|
T Consensus 455 vPsSTle-NWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k--dDRsflk~~~~n~vi 529 (941)
T KOG0389|consen 455 VPSSTLE-NWLREFAKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK--DDRSFLKNQKFNYVI 529 (941)
T ss_pred ecchhHH-HHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh--HHHHHHHhccccEEE
Confidence 9988764 45667777776 478888898876554443332 26799999976543110 112233345689999
Q ss_pred ecchhHhhhCC--CHHHHHHH
Q 020452 206 LDEADRMIENG--HFRELQSI 224 (326)
Q Consensus 206 iDEah~l~~~~--~~~~i~~i 224 (326)
+||+|.+=+.. ++..++.|
T Consensus 530 yDEgHmLKN~~SeRy~~LM~I 550 (941)
T KOG0389|consen 530 YDEGHMLKNRTSERYKHLMSI 550 (941)
T ss_pred ecchhhhhccchHHHHHhccc
Confidence 99999775443 34444444
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.5e-06 Score=83.58 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|-..--.+ +.|+ |..+.||-|||+++.+|+.-..+..+ .+-|++.+-.|
T Consensus 169 ~~yDVQliGgivL-h~G~--IAEM~TGEGKTLvAtlp~yLnAL~Gk-----------------------gVHvVTVNDYL 222 (1112)
T PRK12901 169 VHYDVQLIGGVVL-HQGK--IAEMATGEGKTLVATLPVYLNALTGN-----------------------GVHVVTVNDYL 222 (1112)
T ss_pred cccchHHhhhhhh-cCCc--eeeecCCCCchhHHHHHHHHHHHcCC-----------------------CcEEEEechhh
Confidence 4666666554333 4444 88999999999999999987765532 47778888899
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEc-CCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeecchh
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVG-GMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLDEAD 210 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViDEah 210 (326)
|..=++++..+...+|++|+++.. +....... ..-.|||..||..-| .++|+.+.. .......+.+.|+||+|
T Consensus 223 A~RDaewmgply~fLGLsvg~i~~~~~~~~~rr--~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 223 AKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARR--KAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred hhccHHHHHHHHHHhCCceeecCCCCCCHHHHH--HhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 999999999999999999998866 33443332 233689999998666 455544311 11123558899999999
Q ss_pred Hhh
Q 020452 211 RMI 213 (326)
Q Consensus 211 ~l~ 213 (326)
.++
T Consensus 301 SIL 303 (1112)
T PRK12901 301 SVL 303 (1112)
T ss_pred hhh
Confidence 776
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.9e-05 Score=65.64 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=37.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.++...+..|...+..+ .+...+++.||+|||||+.++...++.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al-~~~~lV~i~G~aGTGKT~La~a~a~~~l~ 100 (262)
T PRK10536 55 SPILARNEAQAHYLKAI-ESKQLIFATGEAGCGKTWISAAKAAEALI 100 (262)
T ss_pred ccccCCCHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45666788999999877 46778888999999999998887776653
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=78.79 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=88.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
.=.++.||.|||||.+.+-++-+.+ . ....++++++..+.|+.+....++.. ++
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l-~---------------------~~~~~VLvVShRrSL~~sL~~rf~~~----~l 103 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDAL-K---------------------NPDKSVLVVSHRRSLTKSLAERFKKA----GL 103 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhc-c---------------------CCCCeEEEEEhHHHHHHHHHHHHhhc----CC
Confidence 3458899999999977644433322 1 12448999999999999999998765 22
Q ss_pred EEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHH------HHH-HH
Q 020452 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE------LQS-II 225 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~------i~~-il 225 (326)
.-...+.+...... -....+-+++..+.|..+.. ..+++.++||+||+...+..-+... +.. +.
T Consensus 104 ~gFv~Y~d~~~~~i---~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~ 174 (824)
T PF02399_consen 104 SGFVNYLDSDDYII---DGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLK 174 (824)
T ss_pred Ccceeeeccccccc---cccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHH
Confidence 11112222211111 00134677778788765542 3467789999999998776533222 122 22
Q ss_pred HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HHHHHHh
Q 020452 226 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKL 275 (326)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~~l 275 (326)
..+. ....+|++-||+... .+|.+.+
T Consensus 175 ~lI~------------------------~ak~VI~~DA~ln~~tvdFl~~~ 201 (824)
T PF02399_consen 175 ELIR------------------------NAKTVIVMDADLNDQTVDFLASC 201 (824)
T ss_pred HHHH------------------------hCCeEEEecCCCCHHHHHHHHHh
Confidence 3332 456899999999854 4565554
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.3e-05 Score=76.08 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=53.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC--
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-- 150 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-- 150 (326)
-++=|.+.||||||++|+=.|.+.- + ..+-.+-||+|||.+.-.-++...+....++
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLh-k--------------------~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k 133 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELH-K--------------------KYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFK 133 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHH-H--------------------HhCceeEEEEeccHHHHhhhHHHHHHHHHHHhh
Confidence 4788899999999999976665532 1 1345689999999987655333333222211
Q ss_pred ----CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 151 ----NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 151 ----~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
+.+.-.+.-+.......-...+.+.+++.|-..+
T Consensus 134 ~~Yent~~e~~i~~~~~~~~~~~~~~~~~vLl~~~~Af 171 (985)
T COG3587 134 SEYENTRLESYIYDEDIEKFKFKSNNKPCVLLIFVSAF 171 (985)
T ss_pred hhccCcceeEEeechHHHHHhhccCCCceEEEEehhhh
Confidence 2233333333222222233345677888876655
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.4e-05 Score=70.68 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=65.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
-++|.|..|||||+.++-.+... ... ..+.++++++++.+|...+.+.+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~--------------------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNS--------------------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hcc--------------------ccCCceEEEEecchHHHHHHHHHhhhccc----
Confidence 46889999999998875443333 111 22447999999999999888877664200
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC-------CHHHHHHHHH
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG-------HFRELQSIID 226 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~-------~~~~i~~il~ 226 (326)
......+..+..+...+.. ........++|||||||++.+.+ ....+..++.
T Consensus 58 ------------------~~~~~~~~~~~~~i~~~~~---~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~ 116 (352)
T PF09848_consen 58 ------------------KLKKSDFRKPTSFINNYSE---SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIK 116 (352)
T ss_pred ------------------chhhhhhhhhHHHHhhccc---ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHh
Confidence 0011222334443333221 11345678999999999998732 1355656655
Q ss_pred h
Q 020452 227 M 227 (326)
Q Consensus 227 ~ 227 (326)
.
T Consensus 117 ~ 117 (352)
T PF09848_consen 117 R 117 (352)
T ss_pred c
Confidence 4
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=75.46 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+.+-|..|+..+++...-.+++||+|||||.+....|.+.+.+ +-++|+.+||..-
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----------------------~k~VLVcaPSn~A 241 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----------------------KKRVLVCAPSNVA 241 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----------------------CCeEEEEcCchHH
Confidence 67889999998886444456889999999999977666655532 3389999999999
Q ss_pred HHHHHHHHH
Q 020452 136 ALQVTDHLK 144 (326)
Q Consensus 136 ~~Q~~~~l~ 144 (326)
+.-+.+++.
T Consensus 242 VdNiverl~ 250 (649)
T KOG1803|consen 242 VDNIVERLT 250 (649)
T ss_pred HHHHHHHhc
Confidence 988888644
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=71.03 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
.++|+.++..++ ..+-.++.|+.|||||.+. ..++..+.... ...+..++++.+||..-+.
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~-----------------~~~~~~~I~l~APTGkAA~ 207 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTV-ARLLLALVKQS-----------------PKQGKLRIALAAPTGKAAA 207 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc-----------------cccCCCcEEEECCcHHHHH
Confidence 378999998885 6788899999999999764 33333332211 0011357999999998888
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc---cccCCCeeEEeecchhHhhh
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH---LVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~---~~~l~~l~~lViDEah~l~~ 214 (326)
.+.+.+......++.. . . ......+-..|-.+++......... ..+...+++|||||+-.+ +
T Consensus 208 rL~e~~~~~~~~l~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d 272 (586)
T TIGR01447 208 RLAESLRKAVKNLAAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D 272 (586)
T ss_pred HHHHHHHhhhcccccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C
Confidence 8777765543322210 0 0 0001112234544444332111000 112335799999999743 2
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
...+..+++.++
T Consensus 273 ---~~l~~~ll~al~ 284 (586)
T TIGR01447 273 ---LPLMAKLLKALP 284 (586)
T ss_pred ---HHHHHHHHHhcC
Confidence 456777788777
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=62.88 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=95.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH--QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~--~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
+|+-+..+.+++-.+. .++ -.++.|.+....++. +|.|.+.+.-.|.|||.+ ++|++..++.+.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg----------- 69 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG----------- 69 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-----------
Confidence 5666666666664443 355 789999999988864 367999999999999966 578887776442
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEE--EEEcCCCH--H------HHHHHHhcCCCEEEeCc
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVV--PIVGGMST--E------KQERLLKARPELVVGTP 181 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~--~~~g~~~~--~------~~~~~~~~~~~IlV~Tp 181 (326)
..-+.+++| ++|..|..+.+...+... +-++. .+.-.... . ...+.....-.|+++||
T Consensus 70 ----------~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~P 138 (229)
T PF12340_consen 70 ----------SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATP 138 (229)
T ss_pred ----------CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeCh
Confidence 225666666 679999999988776532 22222 22222221 1 11112223557999999
Q ss_pred HHHHHHHh-------cCCc----cc----ccCCCeeEEeecchhHhhh
Q 020452 182 GRLWELMS-------GGEK----HL----VELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 182 ~~l~~ll~-------~~~~----~~----~~l~~l~~lViDEah~l~~ 214 (326)
+.++.+.- .+.. .. ..+++...=|+||+|..+.
T Consensus 139 EhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 139 EHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 99865431 1110 00 0123344468888887765
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.7e-05 Score=74.22 Aligned_cols=95 Identities=23% Similarity=0.321 Sum_probs=57.7
Q ss_pred CCCCCChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh--hhhhhhhh------------hhh
Q 020452 52 LGFKEPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK--AGKMLEEK------------GEE 114 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~--~~~~~~~~------------~~~ 114 (326)
+.| +|++.|...+..++ ....+.++.+|||+|||++.+-..+......+.. .+...-.. ++.
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 445 78999998776553 4667899999999999998765544433222211 00000000 000
Q ss_pred ----hhh-cCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 020452 115 ----AEK-YAPKGHLRALIITPTRELALQVTDHLKEVA 147 (326)
Q Consensus 115 ----~~~-~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 147 (326)
.+. ...-+-|++.|-.-|+.-..|+.+++++..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 001 011246788999999988888888887653
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00024 Score=70.69 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
.++|+.|+...+ ..+-.++.|++|||||.+.. .++..+.... .....++++.+||..-+.
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~------------------~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVA-KLLAALIQLA------------------DGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc------------------CCCCcEEEEECCcHHHHH
Confidence 589999998875 67788999999999997642 2333332210 012357889999999888
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc---ccccCCCeeEEeecchhHhhh
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~---~~~~l~~l~~lViDEah~l~~ 214 (326)
.+.+.+.......++. . . .......-..|-.+++........ ...+.-..++||+||+-.+ +
T Consensus 214 rL~e~~~~~~~~~~~~---------~--~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d 278 (615)
T PRK10875 214 RLTESLGKALRQLPLT---------D--E---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D 278 (615)
T ss_pred HHHHHHHhhhhccccc---------h--h---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c
Confidence 8887776544332210 0 0 000111122344444332211100 0112334689999999743 2
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
...+..+++.++
T Consensus 279 ---~~lm~~ll~al~ 290 (615)
T PRK10875 279 ---LPMMARLIDALP 290 (615)
T ss_pred ---HHHHHHHHHhcc
Confidence 567777888887
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.1e-05 Score=53.55 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=40.6
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHH
Q 020452 64 CIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143 (326)
Q Consensus 64 ~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l 143 (326)
++...+..+.-+++.+|.|||||...+-.+...+.... .. +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~------------------~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA------------------DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc------------------CC-CCeEEEECCCHHHHHHHHHHH
Confidence 34433342334556999999999776555544442110 11 448999999999999988887
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.2e-05 Score=70.36 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=85.9
Q ss_pred CChHHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAHQGK----DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~----dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+-|+|.+.+.-+..+.. .-|+.-..|.|||.-.+..++..+. +...||++|
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~------------------------ra~tLVvaP 239 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD------------------------RAPTLVVAP 239 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc------------------------cCCeeEEcc
Confidence 568899998855432222 2366778999999887665555321 225899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc----------ccccCCCe
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK----------HLVELHTL 201 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~----------~~~~l~~l 201 (326)
+-+|. |+...+..+..+ ..++...+|.... .....+. +.|++.+|...+....+.... ....++++
T Consensus 240 ~VAlm-QW~nEI~~~T~g-slkv~~YhG~~R~-~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi 315 (791)
T KOG1002|consen 240 TVALM-QWKNEIERHTSG-SLKVYIYHGAKRD-KNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSI 315 (791)
T ss_pred HHHHH-HHHHHHHHhccC-ceEEEEEeccccc-CCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhc
Confidence 99975 778888888762 4566666665433 3333333 689999999988777754211 11124444
Q ss_pred --eEEeecchhHhhh
Q 020452 202 --SFFVLDEADRMIE 214 (326)
Q Consensus 202 --~~lViDEah~l~~ 214 (326)
--+|+||||.+-+
T Consensus 316 ~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 316 KFYRIILDEAHNIKD 330 (791)
T ss_pred eeeeeehhhhccccc
Confidence 4589999998754
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5e-05 Score=74.08 Aligned_cols=144 Identities=23% Similarity=0.216 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAHQ----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+-|+|..++.-++.. +.--|+...-|-|||++.+..|+..-...+... ....... ..|||||
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~------------~~~~~a~-~TLII~P 391 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKARE------------KKGESAS-KTLIICP 391 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhc------------ccccccC-CeEEeCc
Confidence 5678999988665321 234577888999999877655554322211110 0111111 4999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH----HHhcCCcccccCCC--eeEEe
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE----LMSGGEKHLVELHT--LSFFV 205 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~----ll~~~~~~~~~l~~--l~~lV 205 (326)
-. |..|++..+......-.++|...+|....+-..+. ...+||+|+|+.-+.. -...+ .....+.+ +..||
T Consensus 392 aS-li~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~-L~~YDvViTTY~lva~~~~~e~~~~-~~~spL~~I~W~RVI 468 (901)
T KOG4439|consen 392 AS-LIHQWEAEVARRLEQNALSVYLYHGPNKREISAKE-LRKYDVVITTYNLVANKPDDELEEG-KNSSPLARIAWSRVI 468 (901)
T ss_pred HH-HHHHHHHHHHHHHhhcceEEEEecCCccccCCHHH-HhhcceEEEeeeccccCCchhhhcc-cCccHHHHhhHHHhh
Confidence 64 88899999988887777899989987642222222 3468999999766543 11111 11112222 46799
Q ss_pred ecchhHhhhC
Q 020452 206 LDEADRMIEN 215 (326)
Q Consensus 206 iDEah~l~~~ 215 (326)
+||||.+-+.
T Consensus 469 LDEAH~IrN~ 478 (901)
T KOG4439|consen 469 LDEAHNIRNS 478 (901)
T ss_pred hhhhhhhccc
Confidence 9999988654
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00042 Score=70.58 Aligned_cols=67 Identities=27% Similarity=0.229 Sum_probs=47.3
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..++ .+++-|++++..+. .++-+++.++.|||||.+. -.++..+... ++...+++++
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--------------------~~~~~v~l~A 375 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAI-QHKVVILTGGPGTGKTTIT-RAIIELAEEL--------------------GGLLPVGLAA 375 (720)
T ss_pred hcCC-CCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHH-HHHHHHHHHc--------------------CCCceEEEEe
Confidence 3555 79999999999885 6778899999999999654 3344433211 1114688899
Q ss_pred CcHHHHHHHH
Q 020452 131 PTRELALQVT 140 (326)
Q Consensus 131 Pt~~L~~Q~~ 140 (326)
||..-+..+.
T Consensus 376 pTg~AA~~L~ 385 (720)
T TIGR01448 376 PTGRAAKRLG 385 (720)
T ss_pred CchHHHHHHH
Confidence 9988776443
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=71.52 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=92.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+.+.+-....+.|.+.+. -+..++.-|++|+-.++....-.+|.|=+|||||.+....+ ..++..
T Consensus 648 P~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~~---------- 712 (1100)
T KOG1805|consen 648 PKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVAL---------- 712 (1100)
T ss_pred chhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHHc----------
Confidence 344444455666666664 22367899999999887666667888999999997754433 333221
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHH-----------------HHHHHHhcC
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE-----------------KQERLLKAR 173 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~-----------------~~~~~~~~~ 173 (326)
+.++|..+=|..-+..+.-.++.+ ++.+..+-.+.... ...+...+.
T Consensus 713 ------------gkkVLLtsyThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~ 776 (1100)
T KOG1805|consen 713 ------------GKKVLLTSYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQ 776 (1100)
T ss_pred ------------CCeEEEEehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCC
Confidence 448999998988777776666554 33333222222111 122233457
Q ss_pred CCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 174 ~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.|+.||--.+.+.+ +....+++.|+|||-.+..
T Consensus 777 ~~IVa~TClgi~~pl-------f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 777 TSIVACTCLGINHPL-------FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred CcEEEEEccCCCchh-------hhccccCEEEEcccccccc
Confidence 889999976665544 3345589999999987653
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00063 Score=53.62 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=13.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
++++.+++.|++|+|||...--
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHH
Confidence 3567889999999999977533
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00024 Score=72.99 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=92.3
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++.||...+.-+ +++.-|-|+.-..|-|||.-- +.++.++.-.+. ..|| -||+|||
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeeg------------------nWGP-HLIVVpT 674 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEG------------------NWGP-HLIVVPT 674 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhccc------------------CCCC-ceEEeec
Confidence 3577888877553 445558899999999999654 555665543322 2233 4888999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH-HHh--cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER-LLK--ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~-~~~--~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
.-+.+ +.=.|++++. ++++...+|........+ .|. +-.||+|+.+..+..-+.. +.-.+++++|+|||
T Consensus 675 sviLn-WEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 675 SVILN-WEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEA 746 (1958)
T ss_pred hhhhh-hhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhh
Confidence 87654 4556777766 678888888754433322 122 2458999998777654432 33467899999999
Q ss_pred hHhhhCCCHHHHHHHHH
Q 020452 210 DRMIENGHFRELQSIID 226 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~ 226 (326)
|.+-++ ....++.++.
T Consensus 747 qnIKnf-ksqrWQAlln 762 (1958)
T KOG0391|consen 747 QNIKNF-KSQRWQALLN 762 (1958)
T ss_pred hhhcch-hHHHHHHHhc
Confidence 998643 2445555553
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0007 Score=70.00 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHH--Hhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA--AHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~--l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++.||++.+.-+ ++. +=+-|+|-.-|-|||+-.+--+..-.+..+. ........-.||+||.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--------------~~~e~~~~PSLIVCPs 1040 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--------------ESSEFNRLPSLIVCPS 1040 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--------------cchhhccCCeEEECCc
Confidence 4577888886443 322 2377999999999998764444333333211 1111222338999996
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
.|+--+..++.+|+.. ++|...+|+-......+...++.+|+|+.++.+..-+.. ..-.++.|.|+||-|-|
T Consensus 1041 -TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1041 -TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred -hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCccee
Confidence 4888899999999876 566667777666666666666789999998887522210 11134679999999977
Q ss_pred hhCCCHHHHHHHHHhCC
Q 020452 213 IENGHFRELQSIIDMLP 229 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~ 229 (326)
-+ -...+....+.+.
T Consensus 1113 kN--~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1113 KN--SKTKLTKAVKQLR 1127 (1549)
T ss_pred cc--hHHHHHHHHHHHh
Confidence 53 2455666666665
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=62.67 Aligned_cols=88 Identities=30% Similarity=0.445 Sum_probs=67.6
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CHHHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccc
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM-STEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLV 196 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~ 196 (326)
...+.|.+|||+.+---|-.+.+.++.+-.. +..|+-++... ...++...+. ...+|.||||+|+..++.++. .
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L 197 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---L 197 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---C
Confidence 3467889999999988888888888877321 23444444443 6667777776 478999999999999998764 7
Q ss_pred cCCCeeEEeecchh
Q 020452 197 ELHTLSFFVLDEAD 210 (326)
Q Consensus 197 ~l~~l~~lViDEah 210 (326)
.++++.+||||--|
T Consensus 198 ~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 198 SLSNLKRIVLDWSY 211 (252)
T ss_pred CcccCeEEEEcCCc
Confidence 78999999999755
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=3.7e-05 Score=73.39 Aligned_cols=192 Identities=8% Similarity=-0.064 Sum_probs=127.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
+.+...++++--.....+|..++..+ .+|+++++...|.+||.++|.+..........
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~--------------------- 330 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFA-SEGRADGGNEARQAGKGTCPTSGSRKFQTLCH--------------------- 330 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhh-hhcccccccchhhcCCccCcccchhhhhhcCc---------------------
Confidence 44555566666677889999999888 79999999999999999999888777654332
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcC---CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH-hcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM-SGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll-~~~~~~~~~l 198 (326)
....+++.|+.++++...+.+.-.... ..-.++-.+.+..........+.+..++.+.|..+...+ .+.--+...+
T Consensus 331 ~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~ 410 (1034)
T KOG4150|consen 331 ATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPV 410 (1034)
T ss_pred ccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHH
Confidence 235788889999887654433222111 112344455555555555666678899999998876543 2222233445
Q ss_pred CCeeEEeecchhHhhhCCCHHH----HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 199 HTLSFFVLDEADRMIENGHFRE----LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~----i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
-...++++||+|.... -+... +.++++.+. |+.. ..+.|++-.|||+.+....++.
T Consensus 411 ~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~---------------~F~~----~~~~~~~~~~~~~K~~~~~~~~ 470 (1034)
T KOG4150|consen 411 FEELCKDTNSCALYLF-PTKALAQDQLRALSDLIK---------------GFEA----SINMGVYDGDTPYKDRTRLRSE 470 (1034)
T ss_pred HHHHHhcccceeeeec-chhhHHHHHHHHHHHHHH---------------HHHh----hcCcceEeCCCCcCCHHHHHHH
Confidence 5567899999997653 23333 333333332 2222 1568999999999988888777
Q ss_pred hh
Q 020452 275 LK 276 (326)
Q Consensus 275 l~ 276 (326)
+.
T Consensus 471 ~~ 472 (1034)
T KOG4150|consen 471 LA 472 (1034)
T ss_pred hc
Confidence 64
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00038 Score=70.24 Aligned_cols=133 Identities=23% Similarity=0.270 Sum_probs=96.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|..+|...--.+ ...-+..+.||-|||+++.+|+.-..+. +-.+.+++-
T Consensus 77 lg~-~~~dVQliG~i~l---h~g~iaEM~TGEGKTL~atlp~ylnaL~-----------------------gkgVhvVTv 129 (822)
T COG0653 77 LGM-RHFDVQLLGGIVL---HLGDIAEMRTGEGKTLVATLPAYLNALA-----------------------GKGVHVVTV 129 (822)
T ss_pred cCC-ChhhHHHhhhhhh---cCCceeeeecCCchHHHHHHHHHHHhcC-----------------------CCCcEEeee
Confidence 455 5666666554222 3445789999999999999998765543 225788888
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
.-.||.--.+++..+...+|+.+++...+.......... .|||..+|-..| .++++.+. ..-.....+.+-|+|
T Consensus 130 NdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvD 207 (822)
T COG0653 130 NDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVD 207 (822)
T ss_pred hHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEc
Confidence 999999999999999999999999999998776665554 489999998777 34443221 011223457889999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|-++
T Consensus 208 EvDSIL 213 (822)
T COG0653 208 EVDSIL 213 (822)
T ss_pred chhhee
Confidence 999765
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=67.89 Aligned_cols=65 Identities=11% Similarity=-0.046 Sum_probs=45.6
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..|+ .+++-|..++..++..+.-+++.++.|+|||.+ +-.+...+ .. .+.+++.++
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e~---------------------~G~~V~~~A 397 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-EA---------------------AGYEVRGAA 397 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-HH---------------------cCCeEEEec
Confidence 3565 799999999998863334468899999999976 33333333 21 145899999
Q ss_pred CcHHHHHHH
Q 020452 131 PTRELALQV 139 (326)
Q Consensus 131 Pt~~L~~Q~ 139 (326)
||---+..+
T Consensus 398 pTGkAA~~L 406 (988)
T PRK13889 398 LSGIAAENL 406 (988)
T ss_pred CcHHHHHHH
Confidence 998766443
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00014 Score=69.41 Aligned_cols=106 Identities=22% Similarity=0.184 Sum_probs=72.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEE
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v 154 (326)
++-+|||.||||.-+ ++++...+ .++|--|.|-||.++++.+.+. |+.+
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak-----------------------sGvycGPLrLLA~EV~~r~na~----gipC 242 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK-----------------------SGVYCGPLRLLAHEVYDRLNAL----GIPC 242 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc-----------------------cceecchHHHHHHHHHHHhhhc----CCCc
Confidence 455899999999654 45553322 6899999999999999999887 7888
Q ss_pred EEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHH
Q 020452 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 224 (326)
Q Consensus 155 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~i 224 (326)
-+++|......... .+.++.+=||-+++. --...++.|+||+..|-+..++..+.+.
T Consensus 243 dL~TGeE~~~~~~~--~~~a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp~RGwAWTrA 299 (700)
T KOG0953|consen 243 DLLTGEERRFVLDN--GNPAQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDPSRGWAWTRA 299 (700)
T ss_pred cccccceeeecCCC--CCcccceEEEEEEee-----------cCCceEEEEehhHHhhcCcccchHHHHH
Confidence 88887643322211 123567777866641 1123678899999988877765554443
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00049 Score=62.63 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
+++-|.+++.. ..++++|.|+.|||||.+.+--+...+.... ...-++|++++|+..+
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------------------~~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------------------VPPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------------------STGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------------------CChHHheecccCHHHH
Confidence 46788888854 4789999999999999987666665553221 2234799999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH
Q 020452 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186 (326)
Q Consensus 137 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ 186 (326)
.++.+++...+...... ................+-|+|-..+..
T Consensus 59 ~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~ 102 (315)
T PF00580_consen 59 QEMRERIRELLEEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCY 102 (315)
T ss_dssp HHHHHHHHHHHHHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHH
T ss_pred HHHHHHHHHhcCccccc------ccccccccccccccchheeehhhhhhh
Confidence 99999999876543210 000111222222345678888877754
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.003 Score=64.71 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.++ .+++-|+.++..++.+++-+++.++.|+|||... -.+...+ .. .+.++++++|
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~-~~---------------------~g~~V~~~Ap 404 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAW-EA---------------------AGYRVIGAAL 404 (744)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHH-Hh---------------------CCCeEEEEeC
Confidence 344 6899999999988644566789999999999664 2333333 11 1457999999
Q ss_pred cHHHHHHHH
Q 020452 132 TRELALQVT 140 (326)
Q Consensus 132 t~~L~~Q~~ 140 (326)
|---+..+.
T Consensus 405 Tg~Aa~~L~ 413 (744)
T TIGR02768 405 SGKAAEGLQ 413 (744)
T ss_pred cHHHHHHHH
Confidence 987665443
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00032 Score=65.79 Aligned_cols=122 Identities=11% Similarity=0.211 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHH-----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 57 PTPIQKACIPAAA-----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 57 p~~~Q~~~i~~~l-----~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+++-|+.++..++ ..+.++.+.|+-|+|||+.+- .+...+ +. .+..+++++|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~-~~---------------------~~~~~~~~a~ 58 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYL-RS---------------------RGKKVLVTAP 58 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHh-cc---------------------ccceEEEecc
Confidence 5677888876652 367789999999999996642 222222 21 2347899999
Q ss_pred cHHHHHHH--HHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 132 TRELALQV--TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 132 t~~L~~Q~--~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
|-.-|..+ -..+..++ ++.+. . . ....+ .+.+- ......+..+++||+||+
T Consensus 59 tg~AA~~i~~G~T~hs~f---~i~~~----~-~----------~~~~~--~~~~~-------~~~~~~l~~~~~lIiDEi 111 (364)
T PF05970_consen 59 TGIAAFNIPGGRTIHSFF---GIPIN----N-N----------EKSQC--KISKN-------SRLRERLRKADVLIIDEI 111 (364)
T ss_pred hHHHHHhccCCcchHHhc---Ccccc----c-c----------ccccc--ccccc-------chhhhhhhhheeeecccc
Confidence 98765544 22222221 11110 0 0 00000 11111 111244678899999999
Q ss_pred hHhhhCCCHHHHHHHHHhCC
Q 020452 210 DRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~ 229 (326)
-.+. ......+...++.+.
T Consensus 112 sm~~-~~~l~~i~~~lr~i~ 130 (364)
T PF05970_consen 112 SMVS-ADMLDAIDRRLRDIR 130 (364)
T ss_pred cchh-HHHHHHHHHhhhhhh
Confidence 8554 344556666666555
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00082 Score=64.13 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHh---cC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~---~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|..=|-+||..+.. +| +.-.+-|.||||||++..- ++..+ ..-+||++|
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~An-VI~~~-------------------------~rPtLV~Ah 65 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMAN-VIAKV-------------------------QRPTLVLAH 65 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHH-HHHHh-------------------------CCCeEEEec
Confidence 677778888877632 23 4678899999999988633 33333 224899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcE
Q 020452 132 TRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
++.||.|.+..++.++..-.+.
T Consensus 66 NKTLAaQLy~Efk~fFP~NaVE 87 (663)
T COG0556 66 NKTLAAQLYSEFKEFFPENAVE 87 (663)
T ss_pred chhHHHHHHHHHHHhCcCcceE
Confidence 9999999999999998764443
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0029 Score=59.59 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+++.||||+|||.+..-.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467889999999998864433
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=56.96 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=24.6
Q ss_pred hHHHHHHHH---HHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 58 TPIQKACIP---AAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 58 ~~~Q~~~i~---~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
...|..++. .++..++++++.||+|+|||..+..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH
Confidence 455555553 2345788999999999999976544
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.002 Score=58.97 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=40.3
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHHHH
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRLLEER 101 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~d-vlv~apTGsGKT~~~~l~il~~~~~~~ 101 (326)
-.|+..-+..|..|+..++...-+ |.+.++.|||||+.++.+.++.....+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~ 274 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK 274 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh
Confidence 368877788999999988644434 466899999999999998888876653
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.009 Score=63.02 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 020452 40 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 119 (326)
Q Consensus 40 ~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
++++..+......++ .+++-|..++..+...++-.++.|+.|+|||.+. -++...+. .
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e-~------------------- 423 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWE-A------------------- 423 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHH-H-------------------
Confidence 455666655555555 7999999999887544566788999999999654 33433331 1
Q ss_pred CCCCeEEEEEeCcHHHHHHH
Q 020452 120 PKGHLRALIITPTRELALQV 139 (326)
Q Consensus 120 ~~~~~~~lil~Pt~~L~~Q~ 139 (326)
.+.+++.++||-.-+..+
T Consensus 424 --~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 424 --AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred --cCCeEEEEcCcHHHHHHH
Confidence 245899999998766554
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=46.82 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999544
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0021 Score=57.19 Aligned_cols=25 Identities=16% Similarity=0.006 Sum_probs=20.2
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
+..++++++.||+|+|||..+....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHH
Confidence 3567899999999999998765433
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0056 Score=63.67 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=87.9
Q ss_pred CCChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 55 KEPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
..++.+|-+.+.-++ .++.++|+.-.-|-|||.-- +..+..+..... ..|| .||++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~------------------~~gp-flvvvp 428 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ------------------IHGP-FLVVVP 428 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh------------------ccCC-eEEEee
Confidence 578899988775543 26789999999999999653 223333332211 1232 577778
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----c-----CCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----A-----RPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~-----~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
...+. .+.+.+... .++++++.+|........+... . ..+++++|.+.++.=-. ...--...
T Consensus 429 lst~~-~W~~ef~~w---~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~-----~L~~i~w~ 499 (1373)
T KOG0384|consen 429 LSTIT-AWEREFETW---TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA-----ELSKIPWR 499 (1373)
T ss_pred hhhhH-HHHHHHHHH---hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh-----hhccCCcc
Confidence 66543 344445444 3678888998876554433221 1 47899999988743211 11122367
Q ss_pred EEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 203 FFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 203 ~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
++++||||++-+. ...+...+..+.
T Consensus 500 ~~~vDeahrLkN~--~~~l~~~l~~f~ 524 (1373)
T KOG0384|consen 500 YLLVDEAHRLKND--ESKLYESLNQFK 524 (1373)
T ss_pred eeeecHHhhcCch--HHHHHHHHHHhc
Confidence 8999999998632 334444455554
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.024 Score=45.86 Aligned_cols=18 Identities=39% Similarity=0.218 Sum_probs=14.4
Q ss_pred EEEEcCCCchHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~ 92 (326)
+++.|++|+|||......
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 578999999999765443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0062 Score=61.69 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|++++- ....+++|.|..|||||.+.+.-+...+.... ..+-++++++.|+.
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-------------------~~~~~IL~ltft~~ 252 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-------------------AQPEQILLLAFGRQ 252 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-------------------CCHHHeEEEeccHH
Confidence 478999999983 34567899999999999887555444332210 11337999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|..+.+++.....
T Consensus 253 AA~em~eRL~~~lg 266 (684)
T PRK11054 253 AAEEMDERIRERLG 266 (684)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998887654
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0032 Score=56.29 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=38.4
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHH
Q 020452 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100 (326)
Q Consensus 29 ~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~ 100 (326)
+|.++.+|++|++++.+.+.+. ....=++|.+|||||||.+ +..++..+.+.
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 5778889999999988776332 2345678899999999966 46677776443
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.008 Score=59.36 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 57 PTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 57 p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
+..+|-+.+.-+ +.+|-|-|+.-.-|-|||.-. +.++.++....+- .|| -||++|..
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nI------------------wGP-FLVVtpaS 627 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNI------------------WGP-FLVVTPAS 627 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccC------------------CCc-eEEeehHH
Confidence 445676665443 456778999999999999765 5567777655432 232 47788876
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---------HhcCCCEEEeCcHHHH---HHHhcCCcccccCCCe
Q 020452 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---------LKARPELVVGTPGRLW---ELMSGGEKHLVELHTL 201 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---------~~~~~~IlV~Tp~~l~---~ll~~~~~~~~~l~~l 201 (326)
.|- .+...+..|+. .+++....|+.......+. ...+.||+|++.+.+. .++.. -.+
T Consensus 628 tL~-NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk--------vKW 696 (1185)
T KOG0388|consen 628 TLH-NWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK--------VKW 696 (1185)
T ss_pred HHh-HHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh--------hhh
Confidence 653 45666666665 4688888888776554433 2347899999987763 22221 236
Q ss_pred eEEeecchhHhhhCCCHHHHHHHH
Q 020452 202 SFFVLDEADRMIENGHFRELQSII 225 (326)
Q Consensus 202 ~~lViDEah~l~~~~~~~~i~~il 225 (326)
.+.|+|||..+-++. ..-+..++
T Consensus 697 QYMILDEAQAIKSSs-S~RWKtLL 719 (1185)
T KOG0388|consen 697 QYMILDEAQAIKSSS-SSRWKTLL 719 (1185)
T ss_pred hheehhHHHHhhhhh-hhHHHHHh
Confidence 789999999886432 33334444
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0075 Score=61.77 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|++++.. ...+++|.|..|||||.+...-+...+... .-.+-++|+++.|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-------------------~v~p~~IL~lTFTnk 60 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-------------------NASPHSIMAVTFTNK 60 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-------------------CCCHHHeEeeeccHH
Confidence 3689999999843 457899999999999988655554443211 011337999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|.++.+++..+..
T Consensus 61 AA~em~~Rl~~~~~ 74 (715)
T TIGR01075 61 AAAEMRHRIGALLG 74 (715)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988753
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.026 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.++++.|++|+|||.... .+...+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHH
Confidence 35789999999999997653 344444
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0037 Score=48.94 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
+..+++.||+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 56789999999999976543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0077 Score=54.02 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=23.5
Q ss_pred cCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 197 ~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.....+.+|+||||.|-.. -+..+.+.++...
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s 157 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFS 157 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccc
Confidence 3455789999999998743 4667777777655
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.017 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il 94 (326)
+.+.+.||||+|||......+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999977655443
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.022 Score=57.42 Aligned_cols=68 Identities=26% Similarity=0.362 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHh---cC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~---~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|+.-|..+|..+.. +| +..++.|.||||||+...- ++..+ +..+|||+|
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-------------------------~~p~Lvi~~ 62 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-------------------------NRPTLVIAH 62 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-------------------------CCCEEEEEC
Confidence 788999999887632 23 3667899999999987543 33322 225899999
Q ss_pred cHHHHHHHHHHHHHHHcC
Q 020452 132 TRELALQVTDHLKEVAKG 149 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~ 149 (326)
+..+|.|+++.++.++..
T Consensus 63 n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 63 NKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0069 Score=61.46 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|++++.. ....++|.|..|||||.+.+.-+...+.... -.+-++|+++.|+..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------------------v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------------------YQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------------------CCHHHeeeEechHHH
Confidence 478999999843 4578899999999999887665555542210 112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
|.++.+++..++.
T Consensus 60 A~em~~Rl~~~l~ 72 (672)
T PRK10919 60 AREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887754
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0064 Score=59.20 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHh----cC----CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 59 PIQKACIPAAAH----QG----KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 59 ~~Q~~~i~~~l~----~g----~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
|+|...+-.++- .| +.+++.-|-|.|||.......+..+.-. ...+..+++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-------------------g~~~~~i~~~A 61 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-------------------GEPGAEIYCAA 61 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-------------------CccCceEEEEe
Confidence 578877766641 12 2478888999999987655555444321 12356899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
++++-|..+++.+..+......... ... .... ....-.|.....+.+...+.+.... ..-.+..++|+||+|
T Consensus 62 ~~~~QA~~~f~~~~~~i~~~~~l~~-~~~-----~~~~-~~~~~~i~~~~~~s~~~~~s~~~~~-~dG~~~~~~i~DE~h 133 (477)
T PF03354_consen 62 NTRDQAKIVFDEAKKMIEASPELRK-RKK-----PKII-KSNKKEIEFPKTGSFFKALSSDADS-LDGLNPSLAIFDELH 133 (477)
T ss_pred CCHHHHHHHHHHHHHHHHhChhhcc-chh-----hhhh-hhhceEEEEcCCCcEEEEEecCCCC-ccCCCCceEEEeCCC
Confidence 9999999999999998765321100 000 0000 0011233333223333333332222 223357899999999
Q ss_pred HhhhC
Q 020452 211 RMIEN 215 (326)
Q Consensus 211 ~l~~~ 215 (326)
.+-+.
T Consensus 134 ~~~~~ 138 (477)
T PF03354_consen 134 AHKDD 138 (477)
T ss_pred CCCCH
Confidence 87653
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.028 Score=48.83 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=30.6
Q ss_pred CCeeEEeecchhHhhhCC-CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 199 HTLSFFVLDEADRMIENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~-~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...++|+||++|.+.... ....+..++..+.. .+.|+|+.|...|..
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~-----------------------~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE-----------------------SGKQLILTSDRPPSE 143 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH-----------------------TTSEEEEEESS-TTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHh-----------------------hCCeEEEEeCCCCcc
Confidence 457899999999886431 24555566655541 456888888777643
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0062 Score=51.68 Aligned_cols=19 Identities=21% Similarity=-0.010 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.=.++.+|+|+|||...+-
T Consensus 3 ~i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 3467899999999966543
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0048 Score=62.92 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=79.3
Q ss_pred CCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 54 FKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
-..+.+||...+..+ +++.-+-|+.-.+|-|||..-+. ++..++..+. ..|| -+|+|
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~------------------~~GP-~Lviv 451 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQ------------------MQGP-FLIIV 451 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcc------------------cCCC-eEEec
Confidence 347899999988654 33344778899999999987644 4444444321 2344 47889
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHH--HHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK--QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
|+-.|.+-. ..+..+.. .+..+...|...... .........+|+++|.+.+.. ......--+..++||||
T Consensus 452 PlstL~NW~-~Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik-----dk~lLsKI~W~yMIIDE 523 (1157)
T KOG0386|consen 452 PLSTLVNWS-SEFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK-----DKALLSKISWKYMIIDE 523 (1157)
T ss_pred cccccCCch-hhcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC-----CHHHHhccCCcceeecc
Confidence 998887643 33333322 233333333221111 112223578999999877643 12223334578999999
Q ss_pred hhHhhh
Q 020452 209 ADRMIE 214 (326)
Q Consensus 209 ah~l~~ 214 (326)
.|+|-+
T Consensus 524 GHRmKN 529 (1157)
T KOG0386|consen 524 GHRMKN 529 (1157)
T ss_pred cccccc
Confidence 999853
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=57.47 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=63.6
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEE
Q 020452 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVV 155 (326)
Q Consensus 77 v~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~ 155 (326)
..+.||||||++....|++...+. ...-|+.|.....++.....+..-.. +.-..-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg----------------------yr~flffvnq~nilekt~~nftd~~s~kylf~e~ 59 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG----------------------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSEN 59 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc----------------------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhh
Confidence 467899999999877777766332 33567777766655544333321110 0000000
Q ss_pred EEEcCCCHH----HHHHHHhcCCCEEEeCcHHHHHHHhcC---CcccccCCCeeEE-eecchhHhhh
Q 020452 156 PIVGGMSTE----KQERLLKARPELVVGTPGRLWELMSGG---EKHLVELHTLSFF-VLDEADRMIE 214 (326)
Q Consensus 156 ~~~g~~~~~----~~~~~~~~~~~IlV~Tp~~l~~ll~~~---~~~~~~l~~l~~l-ViDEah~l~~ 214 (326)
..+++.... ...........|..+|.+.|...+-+. .....++.+.++| +-||||++-.
T Consensus 60 i~~~d~~i~ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 60 ININDENIEIKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred hhcCCceeeeeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 111111110 000112346789999999987766332 2344556666665 6699999864
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.041 Score=50.91 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=30.1
Q ss_pred CeeEEeecchhHhh-hCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 200 TLSFFVLDEADRMI-ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 200 ~l~~lViDEah~l~-~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+.++|++|.+.++. +......+..+.+.+. +..-++.++||..+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------------------pd~~iLVl~a~~g~ 266 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------------------PDLVIFVGDALAGN 266 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhC------------------------CceEEEeeccccch
Confidence 45799999999875 3334556666665554 45667888998753
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.013 Score=53.88 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 44 LLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 44 ~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.-+..+.+.|+ +++.|...+..++..+++++++|+|||||| +++-.++..+
T Consensus 122 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~ 172 (319)
T PRK13894 122 FTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEM 172 (319)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhh
Confidence 34455656665 567888888877778899999999999999 4445555543
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0027 Score=52.98 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=45.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~ 155 (326)
++.|+-|.|||.+.-+.+...+.. +..+++|.+|+.+-++.+++.+..-++..+.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------------------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~ 58 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------------------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEE 58 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------------------EEEE-SS--S-HHHHHCC------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------------------cCceEEEecCCHHHHHHHHHHHHhhccccccccc
Confidence 478999999998766654443321 1247999999999998888877766554443320
Q ss_pred EEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHH
Q 020452 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225 (326)
Q Consensus 156 ~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il 225 (326)
... ...........+..|-.-.|+.+... -...++||||||=.+- ...+..++
T Consensus 59 ~~~---~~~~~~~~~~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll 111 (177)
T PF05127_consen 59 KKK---RIGQIIKLRFNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLL 111 (177)
T ss_dssp -----------------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHH
T ss_pred ccc---ccccccccccccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHH
Confidence 000 00000011112445666666665211 1235789999997553 44555554
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.022 Score=53.36 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
++-+.+.||||.|||.+..-.+....+.. +...-+||.+-|--... .++++.|+.-++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--------------------~~~kVaiITtDtYRIGA--~EQLk~Ya~im~ 260 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--------------------KKKKVAIITTDTYRIGA--VEQLKTYADIMG 260 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--------------------cCcceEEEEeccchhhH--HHHHHHHHHHhC
Confidence 67889999999999988644333333111 12335677776654332 455666666667
Q ss_pred cEEEEEEcCCCHHHH
Q 020452 152 VRVVPIVGGMSTEKQ 166 (326)
Q Consensus 152 ~~v~~~~g~~~~~~~ 166 (326)
+.+..+.........
T Consensus 261 vp~~vv~~~~el~~a 275 (407)
T COG1419 261 VPLEVVYSPKELAEA 275 (407)
T ss_pred CceEEecCHHHHHHH
Confidence 766555544333333
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|+.+++.+|||+|||......+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3667899999999999886554433
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=53.50 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 47 KSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 47 ~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+...|. +++.|...+..++..+.+++++|+||||||... -.++..+
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i 168 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEI 168 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 34555555 567888888888788899999999999999553 4455544
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.039 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
++.+++.+|||+|||.+....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5578889999999997765433
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.041 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.+++|+|||..+.. +...+
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHH
Confidence 4789999999999976643 44444
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.053 Score=54.88 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=53.0
Q ss_pred CCCCChHHHHHHHHHHHh---cC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 53 GFKEPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~---~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+| .|++.|..++..+.. ++ +..++.+.+|+||++.... ++... +..+||
T Consensus 10 ~~-~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~-------------------------~r~vLI 62 (652)
T PRK05298 10 PY-KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL-------------------------QRPTLV 62 (652)
T ss_pred CC-CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------------------CCCEEE
Confidence 44 799999999988742 22 2567999999999977532 22221 226999
Q ss_pred EeCcHHHHHHHHHHHHHHHcC
Q 020452 129 ITPTRELALQVTDHLKEVAKG 149 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~ 149 (326)
|+|+...|.|+++.++.++..
T Consensus 63 Vt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 63 LAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred EECCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998753
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.015 Score=59.68 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+++.. ....++|.|..|||||.+...-+...+... .-.+-++|+|+-|+..
T Consensus 9 ~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-------------------~v~p~~IL~lTFT~kA 66 (721)
T PRK11773 9 SLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE-------------------NASPYSIMAVTFTNKA 66 (721)
T ss_pred hcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-------------------CCChhHeEeeeccHHH
Confidence 589999999843 457899999999999988755554443211 0112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
|.++.+++..+..
T Consensus 67 A~Em~~Rl~~~~~ 79 (721)
T PRK11773 67 AAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=58.79 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... ....++++|+.|+..+
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-------------------~~p~~IL~vTFt~~Aa 59 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-------------------YKARNIAAVTFTNKAA 59 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------------------CCHHHeEEEeccHHHH
Confidence 68899998743 4678999999999999887666655542210 1133789999999999
Q ss_pred HHHHHHHHHHHc
Q 020452 137 LQVTDHLKEVAK 148 (326)
Q Consensus 137 ~Q~~~~l~~~~~ 148 (326)
.++.+.+.....
T Consensus 60 ~em~~Rl~~~l~ 71 (664)
T TIGR01074 60 REMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHhC
Confidence 999998887654
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.048 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..++++.||+|+|||..+.. +...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l 125 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRL 125 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 36899999999999976533 44444
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.03 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.+++.|++|+|||..+. ++...+.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~ 139 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELI 139 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHH
Confidence 49999999999997664 3555443
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.068 Score=54.04 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 119 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (326)
.++..-..+..+..+.+..-|.+.+..++..++ -+++.|.-|-|||.+.-+.+.... ..
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~------------------- 258 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL------------------- 258 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh-------------------
Confidence 333344456666555666666666666665555 567899999999988776663222 11
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 120 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 120 ~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
....+++|.+|+.+-++.+++.+.+-+...|.+-.+....... ..........|=+-.|.... .
T Consensus 259 -~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~-------------~ 322 (758)
T COG1444 259 -AGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ-------------E 322 (758)
T ss_pred -cCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc-------------c
Confidence 1145899999999999998888877766665432221111000 00000011223344554321 1
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.-++||+|||=.+. ...+..++.. .+.++||.|+...
T Consensus 323 ~~DllvVDEAAaIp----lplL~~l~~~----------------------------~~rv~~sTTIhGY 359 (758)
T COG1444 323 EADLLVVDEAAAIP----LPLLHKLLRR----------------------------FPRVLFSTTIHGY 359 (758)
T ss_pred cCCEEEEehhhcCC----hHHHHHHHhh----------------------------cCceEEEeeeccc
Confidence 15789999997553 4566666643 3578899999744
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.022 Score=49.42 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.+..+++.||+|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 567899999999999976643
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.021 Score=50.11 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=19.7
Q ss_pred CeeEEeecchhHhhhC-CCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIEN-GHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~-~~~~~i~~il~~l~ 229 (326)
+.++||+|++|.+... .....+..++..+.
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~ 127 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLR 127 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHH
Confidence 4578999999977532 22445666665554
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=50.89 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
..+++.||+|+|||.....
T Consensus 40 ~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4579999999999966533
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.03 Score=54.39 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=28.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l~ 92 (326)
.+|+++--.+.+.+.|.. ++..| +.++++||.|+|||.++.+.
T Consensus 10 ~~f~dliGQe~vv~~L~~----------------a~~~~ri~ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRN----------------AFTLNKIPQSILLVGASGVGKTTCARII 55 (491)
T ss_pred CCHHHhcCcHHHHHHHHH----------------HHHcCCCCceEEEECCCCccHHHHHHHH
Confidence 356666556666665542 12333 46899999999999876543
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.029 Score=51.14 Aligned_cols=70 Identities=27% Similarity=0.348 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC
Q 020452 44 LLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 123 (326)
Q Consensus 44 ~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (326)
.-++.+.+.|. +++-|...+..++..+++++++|+||||||... -.++..+... ...
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~--------------------~~~ 162 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN--------------------DPT 162 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc--------------------CCC
Confidence 33455555554 456677777777678889999999999999554 4455544221 112
Q ss_pred eEEEEEeCcHHHH
Q 020452 124 LRALIITPTRELA 136 (326)
Q Consensus 124 ~~~lil~Pt~~L~ 136 (326)
-+++++-.+.|+.
T Consensus 163 ~ri~tiEd~~El~ 175 (299)
T TIGR02782 163 DRVVIIEDTRELQ 175 (299)
T ss_pred ceEEEECCchhhc
Confidence 3788888877763
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.049 Score=49.17 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=59.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 152 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~ 152 (326)
.+++++|+||.|||.. ++++.+..... .......-|-+++-+|...-....|..+-..+ +.
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~-----------~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---ga 122 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQ-----------SDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GA 122 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCC-----------CCCCCccccEEEEecCCCCChHHHHHHHHHHh---Cc
Confidence 4899999999999963 35554332110 01111223667777888776666666554432 22
Q ss_pred EEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 153 ~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
.+. ......... .....+++. -++++|||||+|.++.... .......++.|.
T Consensus 123 P~~---~~~~~~~~~--------------~~~~~llr~--------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 123 PYR---PRDRVAKLE--------------QQVLRLLRR--------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG 176 (302)
T ss_pred ccC---CCCCHHHHH--------------HHHHHHHHH--------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHh
Confidence 210 011111100 011334432 3488999999999986543 233444445443
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.018 Score=58.41 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=70.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH-Hc
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV-AK 148 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~-~~ 148 (326)
....-+++.+.||+|||.-+.--+++.+..+.. .....+.+--|++-.+.-+.+.+..- ..
T Consensus 391 ~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~------------------g~~~na~v~qprrisaisiaerva~er~e 452 (1282)
T KOG0921|consen 391 AENRVVIIKGETGCGKSTQVAQFLLESFLENSN------------------GASFNAVVSQPRRISAISLAERVANERGE 452 (1282)
T ss_pred hcCceeeEeecccccchhHHHHHHHHHHhhccc------------------cccccceeccccccchHHHHHHHHHhhHH
Confidence 344556889999999999998888888866532 23345677778887776666654332 11
Q ss_pred CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 149 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
..+-.|+. ...........---|+.||-+-++..+.++ +..+.++++||.|.-
T Consensus 453 ~~g~tvgy-----~vRf~Sa~prpyg~i~fctvgvllr~~e~g------lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 453 EVGETCGY-----NVRFDSATPRPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHER 505 (1282)
T ss_pred hhcccccc-----cccccccccccccceeeeccchhhhhhhhc------ccccccccchhhhhh
Confidence 11211111 000000000112258899999999988765 456789999999954
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.075 Score=53.90 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=26.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l 91 (326)
+|+++=-.+.+++.|... +.++ +-+|++||.|+|||.+..+
T Consensus 14 tFdEVIGQe~Vv~~L~~a----------------L~~gRL~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 14 DFASLVGQEHVVRALTHA----------------LDGGRLHHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred cHHHHcCcHHHHHHHHHH----------------HhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 455555566666655432 2333 2458999999999977654
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.05 Score=52.55 Aligned_cols=31 Identities=6% Similarity=0.078 Sum_probs=19.2
Q ss_pred CCeeEEeecchhHhhhC-CCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIEN-GHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~-~~~~~i~~il~~l~ 229 (326)
.+.++||+||+|.+... ...+.+..++..+.
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~ 236 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI 236 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 45779999999977532 12344555555443
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.044 Score=57.18 Aligned_cols=138 Identities=22% Similarity=0.151 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 55 KEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l----~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
..+.++|.+.+..+. ..+.+-++....|.|||+-.+..+....... ....+.+++++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~-------------------~~~~~~~liv~ 397 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI-------------------KVYLGPALIVV 397 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc-------------------cCCCCCeEEEe
Confidence 467888998875532 1356778889999999988765554421111 01134789999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH----HHHHHHHhc-C----CCEEEeCcHHHHHHHhcCCcccccCCCe
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMST----EKQERLLKA-R----PELVVGTPGRLWELMSGGEKHLVELHTL 201 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~----~~~~~~~~~-~----~~IlV~Tp~~l~~ll~~~~~~~~~l~~l 201 (326)
|+. ++.++.+.+.++...... +...+|.... ......+.. . .+++++|.+.+...... .....-...
T Consensus 398 p~s-~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~--~~~l~~~~~ 473 (866)
T COG0553 398 PAS-LLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVD--HGGLKKIEW 473 (866)
T ss_pred cHH-HHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhh--HHHHhhcee
Confidence 975 566777777777664432 6666766541 222222222 2 68999999888763210 111333457
Q ss_pred eEEeecchhHhhhC
Q 020452 202 SFFVLDEADRMIEN 215 (326)
Q Consensus 202 ~~lViDEah~l~~~ 215 (326)
..+|+||+|.+-+.
T Consensus 474 ~~~v~DEa~~ikn~ 487 (866)
T COG0553 474 DRVVLDEAHRIKND 487 (866)
T ss_pred eeeehhhHHHHhhh
Confidence 89999999997543
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.049 Score=45.56 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=31.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
+++.||+|+|||...+--+...+ + .+.+++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~----------------------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A----------------------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H----------------------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999976644444433 1 1336777754 45567777776665
|
A related protein is found in archaea. |
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.033 Score=54.98 Aligned_cols=48 Identities=29% Similarity=0.312 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+|+.+|...+..+ +..|+=-|+.+|||||||++.+=..+..+...+.+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~eek 65 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDFEEK 65 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHhHHh
Confidence 7899999887664 45788779999999999999888888887666444
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=18.0
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
...+|||||+|.+... ....+..+++.
T Consensus 869 ~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 869 NVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred cceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 4668999999999753 23445555543
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.046 Score=53.82 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|.|+|...+..+ ..++-.++..+-..|||.+....++...... .+..+++++|+..-
T Consensus 59 ~L~p~Q~~i~~~~-~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---------------------~~~~v~i~A~~~~Q 116 (534)
T PHA02533 59 QMRDYQKDMLKIM-HKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---------------------KDKNVGILAHKASM 116 (534)
T ss_pred CCcHHHHHHHHHH-hcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---------------------CCCEEEEEeCCHHH
Confidence 6899999999776 3456667788889999998765555444321 23489999999999
Q ss_pred HHHHHHHHHHHHcC
Q 020452 136 ALQVTDHLKEVAKG 149 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~ 149 (326)
|..+++.++.+...
T Consensus 117 A~~vF~~ik~~ie~ 130 (534)
T PHA02533 117 AAEVLDRTKQAIEL 130 (534)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888876553
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.064 Score=49.11 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=26.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--cEEE-EcCCCchHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK--DIIG-AAETGSGKTLAF 89 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~--dvlv-~apTGsGKT~~~ 89 (326)
.+|+++-.++.+.+.+... +.+|+ ++++ .||+|+|||...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 18 STIDECILPAADKETFKSI----------------VKKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH----------------HhcCCCCeEEEeeCcCCCCHHHHH
Confidence 3677777777776666532 22332 4555 899999999764
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.17 Score=50.69 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 020452 56 EPTPIQKACIPAAAH--QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~--~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 133 (326)
.|+|.-.+-|..++. ..+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------------------~Gi~IlvTAH~~ 226 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------------------LEIDIVVQAQRK 226 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------------------cCCeEEEECCCh
Confidence 345544444444432 34567788999999998876555543311 145899999999
Q ss_pred HHHHHHHHHHHHHHcCC
Q 020452 134 ELALQVTDHLKEVAKGI 150 (326)
Q Consensus 134 ~L~~Q~~~~l~~~~~~~ 150 (326)
.-+.++++.++..+...
T Consensus 227 ~ts~evF~rv~~~le~l 243 (752)
T PHA03333 227 TMCLTLYNRVETVVHAY 243 (752)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 99999999998887633
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.026 Score=53.54 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=70.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH-HHHHHHHHHHHHHcCCCcE
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-LALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~-L~~Q~~~~l~~~~~~~~~~ 153 (326)
.++.+..|||||.+...-++..+... ..+.+++++-++.. |-.-++..+.......++.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~--------------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~ 63 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN--------------------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN 63 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc--------------------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh
Confidence 57789999999999888777776543 12458999999988 6666888888776665553
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCc-HHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTP-GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp-~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
...-...... .......+..|++..- +.. ........+.++.+|||..+.. ..+..++.++.
T Consensus 64 ~~~~~~~~~~--~i~~~~~g~~i~f~g~~d~~--------~~ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr 126 (396)
T TIGR01547 64 YEFKKSKSSM--EIKILNTGKKFIFKGLNDKP--------NKLKSGAGIAIIWFEEASQLTF----EDIKELIPRLR 126 (396)
T ss_pred hheeecCCcc--EEEecCCCeEEEeecccCCh--------hHhhCcceeeeehhhhhhhcCH----HHHHHHHHHhh
Confidence 2111111100 0000011233444332 111 1112334478999999998743 34555555543
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.084 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.6
Q ss_pred hcCC--cEEEEcCCCchHHHHHHH
Q 020452 70 HQGK--DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~--dvlv~apTGsGKT~~~~l 91 (326)
.++. ++++.||+|+|||..+..
T Consensus 32 ~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 32 DSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred hCCCCceEEEECCCCCCHHHHHHH
Confidence 4555 799999999999977644
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.051 Score=53.03 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=27.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~ 90 (326)
+|+++-.++.....|... +..+. . .+.+++.||+|+|||..+.
T Consensus 12 ~l~dlvg~~~~~~~l~~~------------l~~~~-~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREW------------IESWL-KGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CHHHhcCCHHHHHHHHHH------------HHHHh-cCCCCCeEEEECCCCCCHHHHHH
Confidence 466666677666665442 11111 2 4689999999999996653
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.064 Score=55.47 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=17.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~ 95 (326)
-+|+.+|.|+|||.++.+..-.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999887654433
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.068 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||..... +...+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 4589999999999966533 33333
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.12 Score=44.12 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il 94 (326)
+++.||||+|||.+..-.+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHH
Confidence 57899999999988654443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.044 Score=55.09 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+|+.||.|+|||.++.+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 367999999999998765533
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=48.50 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.045 Score=48.96 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
..|.-+++.|++|+|||...+-.+..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46778899999999999665443333
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.043 Score=48.15 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+..+++.||+|+|||....
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999996654
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.078 Score=51.21 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
.+++.||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999877553
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.16 Score=47.69 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 468999999999977644
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.047 Score=47.86 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999996554
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.13 Score=51.72 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.5
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~i 93 (326)
+++.||.|+|||.++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765543
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.044 Score=56.27 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... -.+-++|+++-|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-------------------i~P~~IL~lTFT~k 60 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-------------------VAPWNILAITFTNK 60 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------CCHHHeeeeeccHH
Confidence 3589999999853 4578999999999999887665555442110 01226888888888
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|..+.+++..++.
T Consensus 61 AA~em~~Rl~~~~~ 74 (726)
T TIGR01073 61 AAREMKERVEKLLG 74 (726)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888877654
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.21 Score=56.65 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+++-|..++..++.++ +=.++.++.|+|||.+. -.++..+ +. .+.+++.++||..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~-~~---------------------~G~~V~~lAPTgr 485 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLA-SE---------------------QGYEIQIITAGSL 485 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHH-Hh---------------------cCCeEEEEeCCHH
Confidence 68999999999887544 45688999999999653 3333332 21 2458999999997
Q ss_pred HHHHHHH
Q 020452 135 LALQVTD 141 (326)
Q Consensus 135 L~~Q~~~ 141 (326)
-+....+
T Consensus 486 AA~~L~e 492 (1960)
T TIGR02760 486 SAQELRQ 492 (1960)
T ss_pred HHHHHHH
Confidence 6665544
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.13 Score=51.23 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.8
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~i 93 (326)
++++||.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998875543
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.06 Score=56.58 Aligned_cols=149 Identities=18% Similarity=0.104 Sum_probs=82.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
|++++..-..|.|||..-+...+...-...... ...-...+.. .....-.|||+|. ++..|+.+.+.......
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~---cS~~~~e~~n--~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~- 446 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSC---CSELVKEGEN--LVETGATLIICPN-AILMQWFEEIHKHISSL- 446 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhh---hhHHHhcccc--eeecCceEEECcH-HHHHHHHHHHHHhcccc-
Confidence 556777778899999887665554421111110 0000001111 1112358999996 57789999988877653
Q ss_pred cEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC----C-------cccccC----CC--eeEEeecchhHhhh
Q 020452 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG----E-------KHLVEL----HT--LSFFVLDEADRMIE 214 (326)
Q Consensus 152 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~----~-------~~~~~l----~~--l~~lViDEah~l~~ 214 (326)
+++....|=............++|||++|...|..=+... . .+.... -. +=-+++|||..+-
T Consensus 447 lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve- 525 (1394)
T KOG0298|consen 447 LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE- 525 (1394)
T ss_pred ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc-
Confidence 6777666643322222223347899999999886544211 0 011111 11 1237899999554
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
. -.......+.+|+
T Consensus 526 s-ssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 526 S-SSSAAAEMVRRLH 539 (1394)
T ss_pred c-hHHHHHHHHHHhh
Confidence 3 3445555566665
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.072 Score=52.22 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
-+++.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4689999999999776553
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.073 Score=53.16 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
-+|++||.|+|||....+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998765533
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.071 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=17.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.|+++.|+||||||.+.-. +...+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHH
Confidence 3799999999999977533 44444
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.05 Score=54.11 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI- 150 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~- 150 (326)
.+-.++..|--.|||+... +++..+... ..+.+++|.+|.+.-++.+++.+..+++..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s--------------------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f 312 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT--------------------FRGIKIGYTAHIRKATEPVFEEIGARLRQWF 312 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh--------------------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhc
Confidence 4557889999999998766 666655433 236699999999999999999999987632
Q ss_pred -CcEEEEEEcCCCHHHHHHHHhcC--CCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 151 -NVRVVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 151 -~~~v~~~~g~~~~~~~~~~~~~~--~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
+-.+....| ... .-...++ ..|..++. . ......-...+++|+|||+.+-+ +.+..++-.
T Consensus 313 ~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa-------r--ntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~ 375 (738)
T PHA03368 313 GASRVDHVKG-ETI---SFSFPDGSRSTIVFASS-------H--NTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGF 375 (738)
T ss_pred chhheeeecC-cEE---EEEecCCCccEEEEEec-------c--CCCCccCCcccEEEEechhhCCH----HHHHHHHHH
Confidence 111111111 100 0000111 12333321 1 11112234689999999997754 455555544
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc--HHHHHHhhc
Q 020452 228 LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKLKH 277 (326)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l~~ 277 (326)
+.. .+.++|++|.|-+.. .-|.-.|+.
T Consensus 376 l~~-----------------------~n~k~I~ISS~Ns~~~sTSFL~nLk~ 404 (738)
T PHA03368 376 LNQ-----------------------TNCKIIFVSSTNTGKASTSFLYNLKG 404 (738)
T ss_pred Hhc-----------------------cCccEEEEecCCCCccchHHHHhhcC
Confidence 442 468899999986532 444444543
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.043 Score=59.52 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 136 (326)
.|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ...-++++++=|++.+
T Consensus 2 ~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------------------~~~~~il~~tFt~~aa 58 (1232)
T TIGR02785 2 WTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRG--------------------VDIDRLLVVTFTNAAA 58 (1232)
T ss_pred CCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------------------CCHhhEEEEeccHHHH
Confidence 5889999994 4689999999999999998877777665422 0112699999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH-HHhcCCcccccCCCeeEEeecchhH
Q 020452 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 137 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
.++.+++...+...--. ........+.+..-...-|+|-..+.. +++.. .....++ -.+=|.||...
T Consensus 59 ~e~~~ri~~~l~~~~~~------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~-~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 59 REMKERIEEALQKALQQ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKH-YYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHHHHHHHHHhc------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHh-hhhcCCC-CCceeCCHHHH
Confidence 99988888765421100 001111112222223456789887754 44332 1122221 13345887774
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.031 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=18.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+++++++.|++|+|||..+...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~ 68 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIA 68 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHH
Confidence 4578899999999999998865443
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.19 Score=46.93 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=19.1
Q ss_pred HHHHhcC--CcEEEEcCCCchHHHHHHH
Q 020452 66 PAAAHQG--KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 66 ~~~l~~g--~dvlv~apTGsGKT~~~~l 91 (326)
..++.+| .++|+.+|+|+|||..+-+
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 3444555 3899999999999976643
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.26 Score=45.35 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999976644
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.086 Score=45.84 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+..+++.|++|+|||....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999996553
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.031 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.148 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.+..+++++|||||||... ..++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4567899999999999654 55655553
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.11 Score=51.87 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=28.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l~i 93 (326)
+|+++--.+.+++.|.. ++..| +.++++||.|+|||.++.+.+
T Consensus 22 ~f~dliGq~~~v~~L~~----------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTN----------------AFETGRIAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CHHHhcCcHHHHHHHHH----------------HHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 56666556655555543 22344 368999999999998775544
|
|
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.21 Score=48.51 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=80.0
Q ss_pred CChHHHHHHHHHHHh-----cC----CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 020452 56 EPTPIQKACIPAAAH-----QG----KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~-----~g----~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (326)
.+-|+|.-++-.++- .| +..++..|-+-|||......+...++-.. ..+-..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------------------~~~~~~ 121 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------------------RSGAGI 121 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------------------hcCCcE
Confidence 678999999988750 11 14688889999999765533333333221 224479
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCC---EEEeCcHHHHHHHhcCCcccccCCCeeE
Q 020452 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE---LVVGTPGRLWELMSGGEKHLVELHTLSF 203 (326)
Q Consensus 127 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~---IlV~Tp~~l~~ll~~~~~~~~~l~~l~~ 203 (326)
.|++|+.+-+.+.+..++......+ + .........+ |...--......+.... ...+-.+..+
T Consensus 122 ~i~A~s~~qa~~~F~~ar~mv~~~~----------~---l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~-~~~Dg~~~~~ 187 (546)
T COG4626 122 YILAPSVEQAANSFNPARDMVKRDD----------D---LRDLCNVQTHSRTITHRKTDSTIKAVAADP-NTVDGLNSVG 187 (546)
T ss_pred EEEeccHHHHHHhhHHHHHHHHhCc----------c---hhhhhccccceeEEEecccceeeeeeccCC-CcccCCCcce
Confidence 9999999999999998888765432 0 0000111112 22222222223333322 2233445678
Q ss_pred EeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 204 FVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 204 lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.|+||.|...+.+ ..+..+..-+.
T Consensus 188 ~I~DEih~f~~~~--~~~~~~~~g~~ 211 (546)
T COG4626 188 AIIDELHLFGKQE--DMYSEAKGGLG 211 (546)
T ss_pred EEEehhhhhcCHH--HHHHHHHhhhc
Confidence 9999999876542 45555554443
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.2 Score=50.04 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+|+.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 458999999999987755
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.093 Score=53.46 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+-+.+.+|||+|||.+.....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 346789999999998765433
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.09 Score=52.60 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
-++++||.|+|||.++.+.+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56999999999998775533
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.052 Score=47.20 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|..+++.+++|+|||...+-.+.+.+.+. +-+++|++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------------------ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----------------------GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----------------------T--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------------------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 456789999999999977655555554331 116777774 33446666666654
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.036 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 62 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 62 ~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
...+..++..+++++++||||||||... -.++..+
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i 186 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAI 186 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHccc
Confidence 3445555578899999999999999543 4455443
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.13 Score=48.91 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
.++++||.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999887553
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.034 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=20.3
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+.-+++++|||||||... ..++..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 35778999999999999654 4455544
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.12 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||.... .+...+
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHH
Confidence 368999999999996653 344443
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.38 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
..+.+.+++|+|||..+...+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 577889999999998765433
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.35 Score=53.85 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+++-|..++..++.+ ++-+++.+..|+|||.+. -.++..+... ....+.+++.++||..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l------------------~~~~~~~V~glAPTgr 1027 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL------------------PESERPRVVGLGPTHR 1027 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh------------------hcccCceEEEECCcHH
Confidence 6899999999998744 356788999999999664 2333333111 0122457888999987
Q ss_pred HHHHH
Q 020452 135 LALQV 139 (326)
Q Consensus 135 L~~Q~ 139 (326)
-+..+
T Consensus 1028 AAk~L 1032 (1747)
T PRK13709 1028 AVGEM 1032 (1747)
T ss_pred HHHHH
Confidence 76554
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.26 Score=54.26 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+++-|.+++..++.+ ++-+++.+..|+|||.+.- .++..+..-. ...+.+++.++||..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~------------------e~~g~~V~glAPTgk 895 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLP------------------ESERPRVVGLGPTHR 895 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHh------------------hccCceEEEEechHH
Confidence 6899999999888643 4678889999999997642 2222221100 022457889999988
Q ss_pred HHHHH
Q 020452 135 LALQV 139 (326)
Q Consensus 135 L~~Q~ 139 (326)
-+..+
T Consensus 896 Aa~~L 900 (1623)
T PRK14712 896 AVGEM 900 (1623)
T ss_pred HHHHH
Confidence 76654
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.1 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||... -.+...+
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l 160 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEI 160 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHH
Confidence 35789999999999765 3344444
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.2 Score=48.97 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.++++||.|+|||.++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47899999999999877553
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.034 Score=50.89 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
.-..|..+++-|...+..+...+.|+++++.||||||... -.+...+- ... |+|.+
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~----------------------~~e-RvIti 206 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFID----------------------SDE-RVITI 206 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCC----------------------Ccc-cEEEE
Confidence 3345678899999999888766779999999999999543 22332221 112 78888
Q ss_pred eCcHHHHHH
Q 020452 130 TPTRELALQ 138 (326)
Q Consensus 130 ~Pt~~L~~Q 138 (326)
--|.||--+
T Consensus 207 EDtaELql~ 215 (355)
T COG4962 207 EDTAELQLA 215 (355)
T ss_pred eehhhhccC
Confidence 888877544
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.15 Score=49.35 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE-EEEeCc-HHHHHHHHHHHHHHHcC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA-LIITPT-RELALQVTDHLKEVAKG 149 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lil~Pt-~~L~~Q~~~~l~~~~~~ 149 (326)
|+-+.+.||||+|||.+.....-....+. +..++ ++-+-+ |.=+ .+.++.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---------------------G~~kV~LI~~Dt~RigA---~EQLr~~Aei 311 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH---------------------GASKVALLTTDSYRIGG---HEQLRIYGKI 311 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc---------------------CCCeEEEEeCCccchhH---HHHHHHHHHH
Confidence 44578899999999988654433221111 11123 333333 2222 3444555554
Q ss_pred CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 150 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
.++.+...............+...-.++|-|+|+.
T Consensus 312 lGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 312 LGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred hCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcC
Confidence 56655444433333333334444456899999954
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.062 Score=45.33 Aligned_cols=39 Identities=33% Similarity=0.399 Sum_probs=30.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
|.+.|+ .++-|...+...+..|..+++.+|||||||...
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344444 567788888777788999999999999999654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.32 Score=55.14 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFG---LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~---l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+++.|..++..++.+ ++-+++.++.|+|||.... -++.+.+ . ..+.+++.++|
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~---------------------~~g~~v~glAp 1076 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E---------------------SEQLQVIGLAP 1076 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H---------------------hcCCeEEEEeC
Confidence 7899999999988643 3556789999999996652 1222222 1 12457899999
Q ss_pred cHHHHHHH
Q 020452 132 TRELALQV 139 (326)
Q Consensus 132 t~~L~~Q~ 139 (326)
|..-+.++
T Consensus 1077 T~~Aa~~L 1084 (1960)
T TIGR02760 1077 THEAVGEL 1084 (1960)
T ss_pred hHHHHHHH
Confidence 98766554
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.18 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
..|+.+.+.||||+|||......+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 356778899999999998764433
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.13 Score=51.54 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
-++++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999998875543
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.44 Score=41.69 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=18.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il 94 (326)
..|.-+++.+++|+|||...+-.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577889999999999976543333
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.057 Score=49.51 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=38.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..|..-+++.. .+.+.| .+++.|..-+..++..+++++++++||||||. ++.+++..+
T Consensus 110 Rk~~~~~~t~~---~l~~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 110 RKFSDEPITPE---DLIEYG--TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred EcCCCCCCCHH---HHhhcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 33444444443 333333 46677776676777899999999999999994 456666655
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.076 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
++.+++.+|||+|||.+....+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999997764433
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.22 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999664 3344444
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.1 Score=45.88 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=35.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 147 (326)
.|..+++.|++|+|||...+-.+...+.+ +-+++|++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-----------------------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------------------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----------------------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 46688999999999997664444444311 33688887 4556667777776653
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.4 Score=47.35 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
.+++.||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765533
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.14 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=17.3
Q ss_pred CCc-EEEEcCCCchHHHHHHHHH
Q 020452 72 GKD-IIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~d-vlv~apTGsGKT~~~~l~i 93 (326)
..+ +++.||.|+|||.++...+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHH
Confidence 456 9999999999998764433
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.073 Score=49.26 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+..++..+++++++|+||||||.. +-.++..+
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTl-l~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTF-TNAALREI 184 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHhhC
Confidence 44445556889999999999999954 34555544
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.18 Score=50.64 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=28.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l~i 93 (326)
.+|+++--++.+...|... +..+ +.+++.||.|+|||.++...+
T Consensus 13 ~~f~~liGq~~i~~~L~~~----------------l~~~rl~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNA----------------LISNRIAPAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred CcHhhccChHHHHHHHHHH----------------HHcCCCCceEEEECCCCCChHHHHHHHH
Confidence 3566666666666555431 2233 567999999999998765533
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.12 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+.......+..+ ..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L-~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRL-TIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHH-hcCCCEEEECCCCCCHHHHHH
Confidence 444455555555 589999999999999997764
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.087 Score=45.64 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 78999999999996653
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=50.91 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=19.7
Q ss_pred CCeeEEeecchhHhhhCC-CHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENG-HFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~-~~~~i~~il~~l~ 229 (326)
.++++|||||+|.+.... ....+..++..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~ 407 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLH 407 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHH
Confidence 347899999999886432 2344555555543
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.17 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+|+.+|.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 467899999999998875543
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.15 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.096 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
++-+++.+|+|+|||....-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5567899999999997765444
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.22 Score=51.59 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.5
Q ss_pred EEEEcCCCchHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGL 91 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l 91 (326)
+|+.||.|+|||.++.+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 48999999999987654
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.17 Score=48.04 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=29.7
Q ss_pred cccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+|++++-.+...+.+... .+..|..++..- +...+.+++.||+|+|||..+
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g----~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVG----IEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC----CCCCCceEEECCCCCChHHHH
Confidence 4577776555555555442 122222121111 123467999999999999765
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.37 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.4
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+-++++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999998775543
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.28 Score=49.07 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.+|+.||.|+|||.++.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34689999999999876553
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.35 Score=47.75 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
-+++.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999776553
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.61 Score=41.43 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHH---HhcCC-cEEEEcCCCchHHHHHH
Q 020452 56 EPTPIQKACIPAA---AHQGK-DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~-dvlv~apTGsGKT~~~~ 90 (326)
.+++.+.+++..+ +..+. .+++.||+|+|||...-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556666666543 23333 68899999999996653
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PHA03372 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.29 Score=48.23 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=88.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-C
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-I 150 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~ 150 (326)
.+-.+.--|--.|||+ ++.|++..++.+ -.+.++-|++.-+.-++-+++++...++. +
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s--------------------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF 260 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN--------------------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMF 260 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh--------------------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhc
Confidence 3446777899999995 568888888764 33679999999999888877777655432 2
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHH-H-HhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE-L-MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-l-l~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
+-+...-. ++-.|.+.-|+.=-. + +.........-.+.+++++||||-+- .+.+..|+..+
T Consensus 261 ~~~~vi~~-------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm 323 (668)
T PHA03372 261 PRKHTIEN-------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFL 323 (668)
T ss_pred Cccceeee-------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhh
Confidence 21111000 122355554433211 0 11011112445678999999999663 45677777777
Q ss_pred CCCCCCCCCCcccccccccccccCCCCceEEEEeeecc--CcHHHHHHhhc
Q 020452 229 PMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--LSADFRKKLKH 277 (326)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--~~~~~~~~l~~ 277 (326)
.. ++..+|..|.|=+ ...-|.-.|+.
T Consensus 324 ~q-----------------------~~~KiIfISS~Nsg~~sTSfL~~Lk~ 351 (668)
T PHA03372 324 AQ-----------------------NTTKIIFISSTNTTNDATCFLTKLNN 351 (668)
T ss_pred cc-----------------------cCceEEEEeCCCCCCccchHHHhccC
Confidence 63 5688889998864 22344444443
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.15 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.165 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+.+|++||.|+|||.++.+.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 358899999999998875543
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.63 Score=36.47 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.6
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
-.++++||+|.+- ++...+..+...
T Consensus 62 ~~~i~iDEiq~~~--~~~~~lk~l~d~ 86 (128)
T PF13173_consen 62 KKYIFIDEIQYLP--DWEDALKFLVDN 86 (128)
T ss_pred CcEEEEehhhhhc--cHHHHHHHHHHh
Confidence 4689999999885 456677777664
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.11 Score=46.31 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=42.3
Q ss_pred CCCCCChHHHHHHHHHH------HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 52 LGFKEPTPIQKACIPAA------AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~------l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..|......+..++..+ +.++.++++.||+|+|||..+...... +... + .
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~-l~~~----------------------g-~ 134 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNE-LLKA----------------------G-I 134 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH-HHHc----------------------C-C
Confidence 34444455555544332 346789999999999999877544433 3321 2 3
Q ss_pred EEEEeCcHHHHHHHHHHH
Q 020452 126 ALIITPTRELALQVTDHL 143 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l 143 (326)
-++++++.+|+.++...+
T Consensus 135 sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 135 SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred eEEEEEHHHHHHHHHHHH
Confidence 456667778877765544
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.32 Score=50.08 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=65.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC--
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-- 150 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-- 150 (326)
--.|+.---|-|||+-.+..+...++..+ .+.-++|||+|-.- +..++..|.++...+
T Consensus 697 sGcILAHcMGLGKTlQVvtflhTvL~c~k-------------------lg~ktaLvV~PlNt-~~NW~~EFekWm~~~e~ 756 (1567)
T KOG1015|consen 697 SGCILAHCMGLGKTLQVVTFLHTVLLCDK-------------------LGFKTALVVCPLNT-ALNWMNEFEKWMEGLED 756 (1567)
T ss_pred cchHHHHhhcccceehhhHHHHHHHHhhc-------------------cCCceEEEEcchHH-HHHHHHHHHHhcccccc
Confidence 34566666799999865433333332221 23448999999765 556677788776642
Q ss_pred --CcEEEEEEcCCCHHHH---HHHHhcCCCEEEeCcHHHHHHHhcCCccccc----------CCCeeEEeecchhHhhh
Q 020452 151 --NVRVVPIVGGMSTEKQ---ERLLKARPELVVGTPGRLWELMSGGEKHLVE----------LHTLSFFVLDEADRMIE 214 (326)
Q Consensus 151 --~~~v~~~~g~~~~~~~---~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~----------l~~l~~lViDEah~l~~ 214 (326)
.+.|..+..-...... ...|...-.|.|.-+..+..+-......... -..-++||+||+|.+-+
T Consensus 757 ~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKN 835 (1567)
T KOG1015|consen 757 DEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKN 835 (1567)
T ss_pred cccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhcc
Confidence 2344333322222222 2233334467666666654443322111111 12358999999997753
|
|
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.15 Score=47.33 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=36.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 36 f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+..+.....-+..+.+.|+ +++.+...+..++..+.+++++++||+|||...
T Consensus 144 IR~~~~~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 144 LRVPRPRTFTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred EEeeCCccCCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 3333333334556666676 456777777777778889999999999999544
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.49 Score=45.19 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997654
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.21 Score=53.62 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=67.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.+++|++|+++-+..+++.+.+... +.++..++|+++.....+.+ ....+|+|||- ++..+ .++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----IierG----IDI 877 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 877 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhcc----ccc
Confidence 44899999999999998888887754 46788899999876554433 35789999993 34444 788
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++++|++.+|++. ...+.....+..
T Consensus 878 P~v~~VIi~~ad~fg----laq~~Qr~GRvG 904 (1147)
T PRK10689 878 PTANTIIIERADHFG----LAQLHQLRGRVG 904 (1147)
T ss_pred ccCCEEEEecCCCCC----HHHHHHHhhccC
Confidence 899999999988642 233445554444
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.16 Score=44.16 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+-+.+|+||||.|-+ |....+.+.++...
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYS 141 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHc
Confidence 4568899999999864 45666666665543
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.069 Score=47.78 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 62 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 62 ~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.+...++.+.+++++|+||||||... ..++..+
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i 151 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEI 151 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHC
T ss_pred HHHHhhccccceEEEEECCCccccchHH-HHHhhhc
Confidence 3344444457889999999999999654 4455544
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.5 Score=38.20 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=15.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+++.|+.|+|||... .-++..+
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHH
Confidence 688999999999654 3344444
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.24 Score=47.19 Aligned_cols=21 Identities=29% Similarity=0.153 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~ 92 (326)
|.-+.+.||||+|||......
T Consensus 191 g~vi~lvGpnG~GKTTtlakL 211 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKL 211 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456788999999999876543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.25 Score=51.89 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=62.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.+++|++|+++-+..+++.++++.. ++++..++|+++.......+ ....+|+|||- ++..+ .++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~G----IDI 728 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIETG----IDI 728 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcc----ccc
Confidence 45899999999999998888887643 57899999999876554433 34789999995 45554 778
Q ss_pred CCeeEEeecchhHh
Q 020452 199 HTLSFFVLDEADRM 212 (326)
Q Consensus 199 ~~l~~lViDEah~l 212 (326)
.+++++|++.+++.
T Consensus 729 p~v~~VIi~~a~~~ 742 (926)
T TIGR00580 729 PNANTIIIERADKF 742 (926)
T ss_pred ccCCEEEEecCCCC
Confidence 89999999999864
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.49 Score=48.44 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.++++.||+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 489999999999997653
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.28 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++.||+|+|||.... ++...+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHH
Confidence 358999999999996543 344443
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.55 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~i 93 (326)
.+++++++|+|||.+..-.+
T Consensus 97 vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 57889999999998765433
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.47 Score=40.11 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
....+++..++|.|||.+++--++..+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 567899999999999998877666655
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.039 Score=54.70 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+|+|.+.+..+-..+ +.+.+..++.+|||.+.+..+...+. ..+.-++++.||.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~----------------------~~P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID----------------------QDPGPMLYVQPTDD 73 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE----------------------eCCCCEEEEEEcHH
Confidence 56899999998873222 47889999999999865544433331 12346999999999
Q ss_pred HHHHHH-HHHHHHHcC
Q 020452 135 LALQVT-DHLKEVAKG 149 (326)
Q Consensus 135 L~~Q~~-~~l~~~~~~ 149 (326)
++.+.. ..+..+.+.
T Consensus 74 ~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 74 AAKDFSKERLDPMIRA 89 (557)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 999866 556666543
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.41 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.5
Q ss_pred hcCC---cEEEEcCCCchHHHHHH
Q 020452 70 HQGK---DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 70 ~~g~---dvlv~apTGsGKT~~~~ 90 (326)
.+|+ -+++.||.|+|||..+.
T Consensus 40 ~~grl~ha~L~~G~~G~GKttlA~ 63 (351)
T PRK09112 40 REGKLHHALLFEGPEGIGKATLAF 63 (351)
T ss_pred HcCCCCeeEeeECCCCCCHHHHHH
Confidence 4554 58999999999997654
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.096 Score=49.03 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=28.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+.|++.=|++.+-+.++.+-...-+.--.+ .--+|+++.+|+|+|||+.+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~------apfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQ------APFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccccc------chhhheeeeCCCCCCchHHH
Confidence 346666677777666655322110000000 01268999999999999664
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.39 Score=44.96 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=29.1
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
....+|+|||.|.- |-+-.-.+.++++.+-. .+.-+|+.|-+.|
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~-----------------------~gvvlVaTSN~~P 169 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFK-----------------------RGVVLVATSNRPP 169 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHH-----------------------CCCEEEecCCCCh
Confidence 34568999999832 33334445556655542 5678888888887
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.67 Score=46.16 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.+++.||.|+|||..+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45889999999999776543
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.12 Score=48.19 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+..++++||||||||... ..++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 5678999999999999664 3344443
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.29 Score=45.20 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=19.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.++++.|+||+|||..... +...+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l 207 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKEL 207 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHH
Confidence 457999999999999976543 44444
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.49 Score=45.69 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
|.-+++.+++|+|||...+-.+.. ... .+.+++|+.- .+-..|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~-~a~----------------------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAAR-LAA----------------------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HHh----------------------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 456788999999999655433332 211 1337888874 44456666665554
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.14 Score=50.19 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=58.2
Q ss_pred ccCCCCHHH-HHHHHHCCCCCCh----HHHHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 37 NELRLHPLL-MKSIYRLGFKEPT----PIQKACIPAAA-HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 37 ~~l~l~~~i-~~~l~~~g~~~p~----~~Q~~~i~~~l-~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
++.++.+.+ +..|++.--..++ .+|.+-=..+- ..++-++|+|..|||||.+++--+...++..+..
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~------- 257 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP------- 257 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-------
Confidence 455666655 4555553332332 23433322221 1345678899999999998876655555544321
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
-.+..+||+.|++-+..-+.+.+-.++.
T Consensus 258 ----------l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 258 ----------LQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred ----------cccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 1122499999999999988888877754
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.86 Score=46.20 Aligned_cols=79 Identities=25% Similarity=0.401 Sum_probs=59.6
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.++|+..+..+.+.+... ++++..++|+.........+ ....+|+||| +.+.+| ++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG----fD 507 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LD 507 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC----ee
Confidence 3568999999999999888888765 78888899987765443322 2467899988 345555 77
Q ss_pred CCCeeEEeecchhHhh
Q 020452 198 LHTLSFFVLDEADRMI 213 (326)
Q Consensus 198 l~~l~~lViDEah~l~ 213 (326)
+.+++++|+-+++...
T Consensus 508 iP~v~lVvi~DadifG 523 (655)
T TIGR00631 508 LPEVSLVAILDADKEG 523 (655)
T ss_pred eCCCcEEEEeCccccc
Confidence 8899999988888643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.18 Score=45.15 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
+.++|+ .+-|.+.+..++. .+..+++.++||||||... ..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 455554 3445555544443 3456899999999999654 4444443
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.57 Score=46.11 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=26.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---cEEEEcCCCchHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK---DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~---dvlv~apTGsGKT~~~~l 91 (326)
+|+++--++.+.+.|... +.+|+ -+++.||.|+|||.++..
T Consensus 12 ~fdeiiGqe~v~~~L~~~----------------I~~grl~hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 12 HFDELIGQESVSKTLSLA----------------LDNNRLAHAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred CHHHccCcHHHHHHHHHH----------------HHcCCCCeeEEEECCCCCcHHHHHHH
Confidence 566665566665555431 23342 358999999999977644
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.14 Score=50.95 Aligned_cols=45 Identities=38% Similarity=0.513 Sum_probs=27.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|.++|| .+-|...+..++. ...-++++||||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444554 3444444444433 3457789999999999764 4455544
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.15 Score=49.17 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=30.1
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~d-vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+.++|+ ++.|...+..++...+- +++.||||||||.+. ..++..+
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~l 282 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSEL 282 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHh
Confidence 445544 66777777676655544 577899999999764 4555554
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.23 Score=50.14 Aligned_cols=116 Identities=23% Similarity=0.210 Sum_probs=69.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
-.|+.-.-|-|||...+..++.+-..... ........-.||+||+. +..|+...+.+..+...+.
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~--------------~~~~~~~kttLivcp~s-~~~qW~~elek~~~~~~l~ 218 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKE--------------EDRQKEFKTTLIVCPTS-LLTQWKTELEKVTEEDKLS 218 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcc--------------hhhccccCceeEecchH-HHHHHHHHHhccCCccceE
Confidence 34677778999998876655543222110 00112334578888875 5567777776666655677
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.+.+| ... ... .....+|+++|++.+.. .. ..--..-.+|+||||.+-..
T Consensus 219 v~v~~g-r~k--d~~-el~~~dVVltTy~il~~----~~---l~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 219 IYVYHG-RTK--DKS-ELNSYDVVLTTYDILKN----SP---LVKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred EEEecc-ccc--ccc-hhcCCceEEeeHHHhhc----cc---ccceeEEEEEeccccccCCc
Confidence 777777 111 111 22357899999988752 11 11123456899999988644
|
|
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.052 Score=51.29 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
++++.||||||||.++++|-+... +..+||+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999988866432 225788888888887766665543
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.5 Score=35.92 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
....++||+||+-..++.++ .+.+..+++.-|
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp 126 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP 126 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC
Confidence 35689999999998877665 456666666554
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.2 Score=38.84 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=32.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|.-+++.+++|+|||....-.+...+. .+-+++|+.--. -..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------------------~g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-----------------------QGKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-----------------------CCCEEEEEEcCC-CHHHHHHHHHHC
Confidence 3567888999999999766444443331 133677776543 345566666555
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.44 Score=44.74 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.||.|+||+..+..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~ 60 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR 60 (365)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999977644
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.1 Score=42.96 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++++++|+|||.+..-
T Consensus 102 vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999977544
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.31 Score=51.33 Aligned_cols=173 Identities=17% Similarity=0.253 Sum_probs=105.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHH--HHHhhh-hh---
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLE--EREKAG-KM--- 107 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~--~~~~~~-~~--- 107 (326)
-.|.+||| -|++.=+++|.+ |.+-+..+ ...-|++--+.|=-=+|+-..+.-+.-+.- ..+..+ ..
T Consensus 712 v~FkdLGL--lIIDEEqRFGVk-----~KEkLK~L-r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~ 783 (1139)
T COG1197 712 VKFKDLGL--LIIDEEQRFGVK-----HKEKLKEL-RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTF 783 (1139)
T ss_pred cEEecCCe--EEEechhhcCcc-----HHHHHHHH-hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEE
Confidence 35666665 233333555653 46677666 566677776666666665543332221110 000000 00
Q ss_pred hhhhh----hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH----HHhcCCCEEEe
Q 020452 108 LEEKG----EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVG 179 (326)
Q Consensus 108 ~~~~~----~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~ 179 (326)
..... ......--.++.++.||.|..+-..++.+.++.+.+ ..++++.+|.+...+... ...+..||+||
T Consensus 784 V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~ 861 (1139)
T COG1197 784 VSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVC 861 (1139)
T ss_pred EecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 00000 000001123466999999999999999999999977 468899999998766544 34468999999
Q ss_pred CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 180 Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
|. .+..+ ++..+...+|||-||++. ..++..+..+..
T Consensus 862 TT-----IIEtG----IDIPnANTiIIe~AD~fG----LsQLyQLRGRVG 898 (1139)
T COG1197 862 TT-----IIETG----IDIPNANTIIIERADKFG----LAQLYQLRGRVG 898 (1139)
T ss_pred ee-----eeecC----cCCCCCceEEEecccccc----HHHHHHhccccC
Confidence 95 45555 788899999999999875 345555555554
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.092 Score=47.70 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=41.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC-----------cHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP-----------TRELALQVTD 141 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P-----------t~~L~~Q~~~ 141 (326)
+=++++||+|+|||.. +-++.+++.-.-. .....-.+|=.. +--|+.++++
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR~~-----------------~~y~~~~liEinshsLFSKWFsESgKlV~kmF~ 239 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIRTN-----------------DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQ 239 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheeeec-----------------CccccceEEEEehhHHHHHHHhhhhhHHHHHHH
Confidence 3468899999999954 4556665532110 011111233233 3347788888
Q ss_pred HHHHHHcCCCcEEEEEEcC
Q 020452 142 HLKEVAKGINVRVVPIVGG 160 (326)
Q Consensus 142 ~l~~~~~~~~~~v~~~~g~ 160 (326)
.++++....+.=|+++...
T Consensus 240 kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred HHHHHHhCCCcEEEEEeHH
Confidence 8888888777666666543
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.17 Score=49.02 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=23.0
Q ss_pred HHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 61 QKACIPAAA-HQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 61 Q~~~i~~~l-~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|...+..++ ..+.-++++||||||||.+. ..++..+
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 334443333 34567899999999999765 3455544
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.55 Score=46.03 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.||.|+|||.++..
T Consensus 38 a~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 359999999999987644
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.48 Score=43.80 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHhcCC---cEEEEcCCCchHHHHHHHH
Q 020452 56 EPTPIQKACIPAAAHQGK---DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~---dvlv~apTGsGKT~~~~l~ 92 (326)
..+|||...|..++..|+ -+++.||.|.|||..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 357999999999876654 5789999999999776443
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.79 Score=40.83 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.-+++.+++|+|||...+-.+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999765443333
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.41 Score=44.36 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.7
Q ss_pred HHHHHhcCC--cEEEEcCCCchHHHHHH
Q 020452 65 IPAAAHQGK--DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 65 i~~~l~~g~--dvlv~apTGsGKT~~~~ 90 (326)
+..++.+++ ++|+.+|.|+|||..+-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLAR 180 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHH
Confidence 344444453 78999999999997653
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.54 Score=46.93 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=56.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.|+|+..++++++.+... ++.+..++|+....+....+. ...+|||||- .+..+ +++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~arG----IDi 323 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAARG----LHI 323 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhcC----CCc
Confidence 458999999999999999888764 788999999988766544332 4678999993 44444 678
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.+++++|.-+.
T Consensus 324 p~V~~VInyd~ 334 (572)
T PRK04537 324 DGVKYVYNYDL 334 (572)
T ss_pred cCCCEEEEcCC
Confidence 88888876443
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.66 Score=44.44 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~ 95 (326)
-+++++++|+|||.+..-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3678999999999886544433
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.68 Score=40.46 Aligned_cols=27 Identities=30% Similarity=0.051 Sum_probs=19.2
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
..|.-+++.|++|+|||...+--+.+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356678999999999996554434433
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.85 E-value=2.2 Score=39.32 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcccccCCCe-eEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 182 GRLWELMSGGEKHLVELHTL-SFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l-~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++..++.+. .-... -.+|+||+|..........+..+++.-.
T Consensus 122 ~~lL~~L~~~~----~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq 166 (408)
T KOG2228|consen 122 SKLLEALKKGD----ETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHhcCC----CCCCceEEEEeehhhccccchhhHHHHHHHHHHh
Confidence 45566665542 22223 4679999998877766666666665543
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.86 Score=43.18 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=32.9
Q ss_pred CeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 200 TLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 200 ~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+++++++|+++.+... .....+-.++..+.. .+.|+|+.|-..|..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~-----------------------~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE-----------------------NGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh-----------------------cCCEEEEEcCCCchh
Confidence 6889999999988743 346667777776663 344888888777643
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.23 Score=51.97 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=36.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
-.-+|++.|.-+.+..-|+++-.. |.-+=+...+.-+..-+-++.++|.|||||+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~-PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLL-PLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHh-HhhhhhHhhhcccCCCcceeecCCCCCchhHHH
Confidence 344799999888888888886442 111111111111234567999999999999875
|
|
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.13 Score=49.98 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=36.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.++++.||||||||..+++|.+-.. +.-+||.=|--+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-------------------------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-------------------------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-------------------------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999999999998876321 114777778888887766666554
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.44 Score=45.59 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=55.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|+++.-|..+++.+... ++++..++|+....+....+ ....+|||||- .+..+ .++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi 321 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAARG----LHI 321 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhhcC----CCc
Confidence 348999999999999888877654 78999999998876654433 34789999993 44444 778
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
.+++++|.-+
T Consensus 322 p~v~~VI~~d 331 (423)
T PRK04837 322 PAVTHVFNYD 331 (423)
T ss_pred cccCEEEEeC
Confidence 8888877543
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.56 Score=48.51 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCCEEEeCcHHHH-HHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCccccccccccccc
Q 020452 173 RPELVVGTPGRLW-ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251 (326)
Q Consensus 173 ~~~IlV~Tp~~l~-~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (326)
...|+++||..|. |++.+. ..+..+..+||||||++.+..-+..+.+++..-+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~r----i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n---------------------- 60 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGI----IPPELITGILVLRADRIIESSQEAFILRLYRQKN---------------------- 60 (814)
T ss_pred cCCEEEEechhhHhHHhcCC----CCHHHccEEEEeecccccccccHHHHHHHHHHhC----------------------
Confidence 4579999999885 565443 7889999999999999987666777777776544
Q ss_pred CCCCceEEEEeeecc
Q 020452 252 QRKKRQTLVFSATIA 266 (326)
Q Consensus 252 ~~~~~q~i~~SATl~ 266 (326)
+..-+.+|||...
T Consensus 61 --~~gfIkafSdsP~ 73 (814)
T TIGR00596 61 --KTGFIKAFSDNPE 73 (814)
T ss_pred --CCcceEEecCCCc
Confidence 4567999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.18 Score=50.27 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=20.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..++++++++|||||||... ..++..+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 45788999999999999654 5555555
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.41 Score=42.65 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=19.7
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~ 92 (326)
+..+.++++.||+|+|||......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 357889999999999999766543
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.5 Score=42.48 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~ 92 (326)
+.+++.||.|+|||.++...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999776543
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=92.57 E-value=3 Score=38.58 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 59 PIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 59 ~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|+.++++..+...|.-+.|.||-.+|||.. +.-+++.+
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l 55 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERL 55 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHH
Confidence 488899988865599999999999999955 44455554
|
|
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.15 Score=50.90 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 151 (326)
..++++.||||||||..+++|-+... +.-+||+=|--|+........++. |
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-------------------------~~S~VV~DpKGEl~~~Ta~~R~~~----G 208 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-------------------------EDSVVVHDIKLENYELTSGWREKQ----G 208 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-------------------------CCCEEEEeCcHHHHHHHHHHHHHC----C
Confidence 34789999999999999999987653 124788888888887777666654 4
Q ss_pred cEEEEE
Q 020452 152 VRVVPI 157 (326)
Q Consensus 152 ~~v~~~ 157 (326)
-+|.++
T Consensus 209 ~~V~vf 214 (606)
T PRK13897 209 QKVFVW 214 (606)
T ss_pred CeEEEE
Confidence 444443
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.2 Score=38.78 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997653
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.3 Score=39.70 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~i 93 (326)
+-+++.+|+|+|||.+..-.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 356778999999998765544
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.13 Score=46.12 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 62 KACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 62 ~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
...+..++.+++.++++||+|+|||...
T Consensus 23 ~~ll~~l~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 23 SYLLDLLLSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHHCTEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCchhHHH
Confidence 3445556678999999999999999654
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.63 Score=40.28 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|.-+++.+++|+|||...+-.+...+.+ +-+++|+.-. +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-----------------------g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-----------------------GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-----------------------CCeEEEEECC-CCHHHHHHHHHHc
Confidence 35678889999999986544333333211 2367776553 4466777776665
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.97 Score=43.38 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=54.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|++++-+..+++.+... ++.+..++|+....+....+. ...+|||||- .+..+ +++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~~G----iDi 311 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAARG----IDI 311 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----ccC
Confidence 458999999999999988888763 788999999988766654433 4678999993 34443 667
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.++++||.
T Consensus 312 p~v~~VI~ 319 (434)
T PRK11192 312 DDVSHVIN 319 (434)
T ss_pred CCCCEEEE
Confidence 78888773
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.7 Score=42.49 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
|.-+++.+|+|+|||...+--+...+ + .+-+++|++ .-|-..|+...++.+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~-~----------------------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENAC-A----------------------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-H----------------------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 45789999999999976544333322 1 133788876 566677888888776
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.2 Score=36.57 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
...+++||||||.|... ....+.+.++.-+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp 130 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPP 130 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTT
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCC
Confidence 56899999999988643 3556666666554
|
... |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.5 Score=36.74 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+.+++.||.|+|||.....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA 33 (188)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999976544
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.46 Score=48.48 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=35.9
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
--++|+|+-|.+.+......+..+++..| .+.+.++.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P------------------------~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAP------------------------ENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCC------------------------CCeEEEEEeccCC
Confidence 35899999999998888899999999999 7788888876655
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.95 Score=37.67 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
...++||+||+-..++.++ .+.+..+++.-|
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp 128 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERP 128 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC
Confidence 4689999999998888776 456666666544
|
Alternate name: corrinoid adenosyltransferase. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.3 Score=41.80 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
|.-+++.+++|+|||...+-
T Consensus 82 GslvLI~G~pG~GKStLllq 101 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ 101 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH
Confidence 45678899999999966543
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.3 Score=45.10 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~ 92 (326)
-+++.||.|+|||.++.+.
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4689999999999877543
|
|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.17 Score=44.74 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
...=++++++|||||+.+.
T Consensus 126 kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cCceEEEECCCCCCchhhH
Confidence 4556788999999999764
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.4 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=16.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~ 95 (326)
-+++.+|+|+|||....-.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999887554443
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.43 Score=47.87 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=41.5
Q ss_pred EEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 157 ~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
..||.......+-.++ --|=+-||++.+-|.... .. =-++++||+|.|..+..++--..+++-|.
T Consensus 382 sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~-----~~-NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 382 SLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAG-----VK-NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ecCccccHHHhccccc--cccccCChHHHHHHHHhC-----Cc-CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 4566655444332222 123356999999886532 11 13699999999997777777777777775
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.29 Score=44.84 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=19.8
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 65 IPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 65 i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+...+..+.++++.+|||||||...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHH
Confidence 3344567899999999999999654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=91.76 E-value=2.5 Score=35.18 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
...++||+||+-..++.++ .+.+..+++.-|
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp 127 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRP 127 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCC
Confidence 4689999999999888876 456666666544
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.1 Score=42.75 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+.|++.+|+|||.+.
T Consensus 174 t~gSlYVsG~PGtgkt~~l 192 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALL 192 (529)
T ss_pred cCcceEeeCCCCcchHHHH
Confidence 4568999999999999664
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.83 Score=45.36 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.|+++.-|..+++.+... ++.+..++|+....+....+. ....|||+|- .+..+ ++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~rG----ID 442 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VASRG----LD 442 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhhcC----CC
Confidence 3568999999999999988887653 778889999988765543332 3678999993 34444 77
Q ss_pred CCCeeEEeec
Q 020452 198 LHTLSFFVLD 207 (326)
Q Consensus 198 l~~l~~lViD 207 (326)
+.++++||.-
T Consensus 443 i~~v~~VI~~ 452 (545)
T PTZ00110 443 VKDVKYVINF 452 (545)
T ss_pred cccCCEEEEe
Confidence 8888888853
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.4 Score=43.14 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGL 91 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l 91 (326)
+++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999877644
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.1 Score=46.29 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
..++++.||+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999977533
|
|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.46 E-value=1 Score=43.54 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCCCChHHHHHHHHH---HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 53 GFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~---~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
.|...+|-|-+-.-. .+..+.+.++.+|+|+|||.+.+-.++..-.... ....+.|+.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p-------------------~~~~KliYC 73 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP-------------------DEHRKLIYC 73 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC-------------------cccceEEEe
Confidence 344556666554433 3467889999999999999887655554332211 123466776
Q ss_pred eCcHHHHHHHHHHHHHH
Q 020452 130 TPTRELALQVTDHLKEV 146 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~ 146 (326)
.-|..-.+....+++.+
T Consensus 74 SRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 74 SRTVPEIEKALEELKRL 90 (755)
T ss_pred cCcchHHHHHHHHHHHH
Confidence 66655555555555544
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.13 Score=46.76 Aligned_cols=19 Identities=42% Similarity=0.476 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
+..|+++.+|||||||+.+
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 3458999999999999765
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.6 Score=43.04 Aligned_cols=68 Identities=19% Similarity=0.467 Sum_probs=52.4
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
++||.+.|+..+..++..+... |+++..++|+.......+.+. ...+|+|+|- ...++ +++.+
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----vaaRG----iDi~~ 341 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VAARG----LDIPD 341 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hhhcc----CCccc
Confidence 7999999999999988777765 789999999999877655544 4789999994 22333 56666
Q ss_pred eeEEe
Q 020452 201 LSFFV 205 (326)
Q Consensus 201 l~~lV 205 (326)
+.+||
T Consensus 342 v~~Vi 346 (513)
T COG0513 342 VSHVI 346 (513)
T ss_pred cceeE
Confidence 76664
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.79 Score=44.63 Aligned_cols=72 Identities=17% Similarity=0.343 Sum_probs=55.9
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccc
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLV 196 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~ 196 (326)
..+.++||.|-|+--|.++...++.. +..+..++|+.+..+....+. ..+.|+|||- ...++ +
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----VAaRG----L 405 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----VAARG----L 405 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----ccccc----C
Confidence 44569999999999999988887775 578899999999877766655 3688999993 22232 6
Q ss_pred cCCCeeEEe
Q 020452 197 ELHTLSFFV 205 (326)
Q Consensus 197 ~l~~l~~lV 205 (326)
++.++++||
T Consensus 406 Di~dV~lVI 414 (519)
T KOG0331|consen 406 DVPDVDLVI 414 (519)
T ss_pred CCccccEEE
Confidence 778888777
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.1 Score=39.33 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+-+.+.+|+|+|||.....
T Consensus 115 ~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3467899999999977543
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.97 Score=45.47 Aligned_cols=30 Identities=10% Similarity=0.387 Sum_probs=19.1
Q ss_pred cCCCeeEEeecchhHhhhCCCHHHHHHHHHh
Q 020452 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDM 227 (326)
Q Consensus 197 ~l~~l~~lViDEah~l~~~~~~~~i~~il~~ 227 (326)
.+..-+++||||+|.|... ....+...++.
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEe 147 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEE 147 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhC
Confidence 3456789999999988542 23344444443
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.2 Score=41.05 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHH---hcC---CcEEEEcCCCchHHHHHHHHH
Q 020452 57 PTPIQKACIPAAA---HQG---KDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 57 p~~~Q~~~i~~~l---~~g---~dvlv~apTGsGKT~~~~l~i 93 (326)
.+|||+..|..+. .+| +-.++.||.|.||+..+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 3678887776653 233 357899999999997764433
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.43 Score=46.59 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=27.3
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHH
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~-dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
|.++|| .+-|.+.+..++...+ -++++||||||||.+. ..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 344544 3445555545444444 4689999999999765 3345544
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.1 Score=43.28 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=53.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|+++.-+..+++.+... ++.+..++|+....+....+. ...+|||||- .+..+ +++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~rG----iDi 311 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAARG----LDI 311 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHhcC----CCc
Confidence 347999999999999888877654 788999999988765544332 4678999993 34444 677
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.++++||.
T Consensus 312 p~v~~VI~ 319 (456)
T PRK10590 312 EELPHVVN 319 (456)
T ss_pred ccCCEEEE
Confidence 78887774
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.7 Score=40.38 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+.+++.||.|+|||...
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999665
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.29 Score=49.56 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=35.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 145 (326)
.++++.||||||||..+++|-+-.. ...+||+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 5899999999999999999876543 11477777877777666555544
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.88 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+++-+.||+|||---+|..-+..++..+..+.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 46678999999999999888888999888776
|
|
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.42 Score=51.64 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=48.1
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
...+++++|.|..|||||++..--++..++... ....-++|+++-|++-+.++..++..-..
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------------------~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGG------------------PLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------------------CCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 356789999999999999998887887776531 01123799999999999998888776554
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.70 E-value=3.2 Score=35.13 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=30.5
Q ss_pred CEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 175 ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 175 ~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
-++|-.+..+.+.+.... ....++.|.+|||+-+.+ ..-..+..+...+.
T Consensus 61 A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~~~-~~v~~l~~lad~lg 110 (201)
T COG1435 61 AVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFFDE-ELVYVLNELADRLG 110 (201)
T ss_pred ceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhCCH-HHHHHHHHHHhhcC
Confidence 466667777777775431 112278999999996543 33455555555443
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.8 Score=47.51 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999665
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=90.62 E-value=1.1 Score=42.91 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~i 93 (326)
..|.=+++.|++|+|||...+--+
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia 215 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIA 215 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHH
Confidence 345567889999999996654433
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.48 Score=42.53 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
.++++.|+||+|||.... .++..+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~ 26 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLI 26 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHH
Confidence 678999999999997766 4444443
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.3 Score=43.09 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=55.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+..+||.|+|+.-+.++++.+... ++.+..++|+....+..... ....+|||+|- .+..+ +++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~~~G----ID~ 292 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AFGMG----INK 292 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hhhcc----CCc
Confidence 446799999999999999888765 78899999998876654333 35789999994 23333 677
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.++++||.-..
T Consensus 293 p~V~~VI~~~~ 303 (470)
T TIGR00614 293 PDVRFVIHYSL 303 (470)
T ss_pred ccceEEEEeCC
Confidence 78888886544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.3 Score=44.16 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987755
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.3 Score=40.30 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.2
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~ 90 (326)
-+|.++++.++||+||++.+.
T Consensus 99 p~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred CCCCcEEEecCCCccHHHHHH
Confidence 368899999999999997763
|
|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.5 Score=40.48 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=16.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHH
Q 020452 76 IGAAETGSGKTLAFGLPIMQRLLE 99 (326)
Q Consensus 76 lv~apTGsGKT~~~~l~il~~~~~ 99 (326)
++.++.|+|||.+....++..+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~ 24 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT 24 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS
T ss_pred CCcCCccccHHHHHHHHHHHHHhh
Confidence 467899999999987777766543
|
The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A. |
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.2 Score=43.20 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=53.3
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|+|+.-+..+++.+... ++.+..++|+....+....+. ...+|+|||- .+..+ .++.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi~ 309 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAARG----LDIK 309 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccccc----cchh
Confidence 47999999999999999888765 788999999998765544332 3678999993 33333 5667
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.-+
T Consensus 310 ~v~~VI~~d 318 (460)
T PRK11776 310 ALEAVINYE 318 (460)
T ss_pred cCCeEEEec
Confidence 777777543
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.5 Score=41.53 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|+.+++.+|+|+|||...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCCEEEEECCCCCChhHHH
Confidence 46889999999999999643
|
Members of this family differ in the specificity of RNA binding. |
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.45 Score=40.69 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+|+..+...++++++.+|.|+|||+.+
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHH
Confidence 334333347899999999999999765
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=90.12 E-value=2.1 Score=36.42 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.-+.+.+|+|+|||...+-.+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999776544433
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.23 Score=41.35 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 163 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 163 ~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
.....+.....++|||++..-|++-..........+. -.+|||||||.+.+
T Consensus 109 PY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 109 PYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGG
T ss_pred hhHHHHHhcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHH
Confidence 3334445556789999999887654322110012233 36899999998875
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.92 E-value=2 Score=36.13 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
++|....|-|||.+++--++..+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~ 53 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL 53 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh
Confidence 67777889999999887777665
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=89.71 E-value=1 Score=47.23 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
.+++.||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999997764
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.4 Score=42.32 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il 94 (326)
+++++++|+|||.+..-.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67899999999987654443
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.34 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 63 ACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 63 ~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+++......|+|+++.+|.|||||+.+
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 344444457899999999999999864
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.57 E-value=2.5 Score=41.43 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcC
Q 020452 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160 (326)
Q Consensus 81 TGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~ 160 (326)
.++||+-.-++++.+.+.. +-.|-++|.+-+.+-|.|.+..+.. ..++.+..++|+
T Consensus 366 vF~gse~~K~lA~rq~v~~---------------------g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e 421 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVAS---------------------GFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGE 421 (593)
T ss_pred eeeecchhHHHHHHHHHhc---------------------cCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecc
Confidence 4677777777766665532 2356799999999999999998873 357889999999
Q ss_pred CCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 161 MSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 161 ~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
.+.......+. ....++||| +++.+| .+|.++.+||-++.-
T Consensus 422 ~~~~qrde~~~~FR~g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 422 RSQKQRDETMERFRIGKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred cchhHHHHHHHHHhccCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 77655433332 356899998 355555 789999999987654
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.38 Score=42.96 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|+++++.||+|+|||..+..
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHH
Confidence 5789999999999999987643
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.89 Score=40.79 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
++++.+|+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 789999999999966543
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.1 Score=43.13 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+-+++.||+|+|||.++-+
T Consensus 111 ~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKI 129 (637)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3489999999999976543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.51 Score=42.72 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=10.9
Q ss_pred EEEEcCCCchHHH
Q 020452 75 IIGAAETGSGKTL 87 (326)
Q Consensus 75 vlv~apTGsGKT~ 87 (326)
.+|-||||+||+-
T Consensus 90 ~~VYGPTG~GKSq 102 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ 102 (369)
T ss_pred EEEECCCCCCHHH
Confidence 3678999999983
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.51 Score=47.37 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=32.6
Q ss_pred EEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 177 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 177 lV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+=+-||++.+.|..-. ..+ -++.+||+|.+.....++--..+++.|.
T Consensus 488 VGAMPGkiIq~LK~v~-----t~N-PliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVK-----TEN-PLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred eccCChHHHHHHHhhC-----CCC-ceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 3356999999986432 222 3789999999985445666667777775
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.9 Score=41.99 Aligned_cols=73 Identities=12% Similarity=0.306 Sum_probs=54.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|++++-++.+++.+... ++.+..++|+....+....+. ....||||| +.+..+ +++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~~G----IDi 401 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAGRG----IHI 401 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccccC----Ccc
Confidence 348999999999998888777554 778889999988766544332 467899999 344444 778
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
.+++++|.-.
T Consensus 402 ~~v~~VI~~~ 411 (475)
T PRK01297 402 DGISHVINFT 411 (475)
T ss_pred cCCCEEEEeC
Confidence 8888888643
|
|
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.4 Score=44.68 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+++.. ....++|.|..|||||.+..--+...+.... -..-+++.++=|+..
T Consensus 2 ~Ln~~Q~~av~~---~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~-------------------v~p~~Il~vTFTnkA 59 (655)
T COG0210 2 KLNPEQREAVLH---PDGPLLVLAGAGSGKTRVLTERIAYLIAAGG-------------------VDPEQILAITFTNKA 59 (655)
T ss_pred CCCHHHHHHHhc---CCCCeEEEECCCCCchhhHHHHHHHHHHcCC-------------------cChHHeeeeechHHH
Confidence 578999999854 3678888999999999987666655543211 112258888888888
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
|.++.+++..+..
T Consensus 60 A~em~~Rl~~~~~ 72 (655)
T COG0210 60 AAEMRERLLKLLG 72 (655)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888765
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.7 Score=43.95 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=52.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|+|+.-+.++++.+... ++.+..++|+.+.......+. ...+|||+|- ++..+ +++.
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~arG----IDip 312 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAARG----LDVE 312 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHhcC----CCcc
Confidence 47999999999999988888764 778889999988766544332 4788999993 34443 6677
Q ss_pred CeeEEee
Q 020452 200 TLSFFVL 206 (326)
Q Consensus 200 ~l~~lVi 206 (326)
++++||.
T Consensus 313 ~V~~VI~ 319 (629)
T PRK11634 313 RISLVVN 319 (629)
T ss_pred cCCEEEE
Confidence 7777764
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.2 Score=50.49 Aligned_cols=158 Identities=19% Similarity=0.263 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHh-------cCC--cEEEEcCC--CchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 56 EPTPIQKACIPAAAH-------QGK--DIIGAAET--GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~-------~g~--dvlv~apT--GsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.++..|-+++-.+.+ +|. -+++--.. |-|+|.+. .|++..++. ..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg--iIfeNyLkG----------------------RK 319 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG--IIFENYLKG----------------------RK 319 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE--EEehhhhcc----------------------cc
Confidence 567788888755421 222 24554334 44555443 344444433 34
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc----CCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc-CCcccccC-
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVG----GMSTEKQERLLKARPELVVGTPGRLWELMSG-GEKHLVEL- 198 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g----~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~-~~~~~~~l- 198 (326)
++|++.=+..|-.+..+.+..+.. .++.|..+.- ..+.+.. ... .-.|+.+|...|.--... +......+
T Consensus 320 rAlW~SVSsDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~r 395 (1300)
T KOG1513|consen 320 RALWFSVSSDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFR 395 (1300)
T ss_pred eeEEEEeccccccchhhchhhcCC-CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHH
Confidence 899999999998888888887744 2455544321 1111100 001 235899998776422211 10111111
Q ss_pred --------CCeeEEeecchhHhhh---------CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEE
Q 020452 199 --------HTLSFFVLDEADRMIE---------NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261 (326)
Q Consensus 199 --------~~l~~lViDEah~l~~---------~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 261 (326)
+.=.++||||||.--+ ...+..+..+-..|| +.+++..
T Consensus 396 QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-------------------------~ARVVYA 450 (1300)
T KOG1513|consen 396 QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-------------------------NARVVYA 450 (1300)
T ss_pred HHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-------------------------CceEEEe
Confidence 1126799999996532 112566666666775 5789999
Q ss_pred eeecc
Q 020452 262 SATIA 266 (326)
Q Consensus 262 SATl~ 266 (326)
|||=.
T Consensus 451 SATGA 455 (1300)
T KOG1513|consen 451 SATGA 455 (1300)
T ss_pred eccCC
Confidence 99964
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.47 Score=40.37 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
-+++++|||||||... ..++..+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3688999999999764 3344443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK13822 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.53 Score=47.51 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 145 (326)
..++++.||||+|||..+++|-+-.. +.-+||+=|..|+...+....++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~-------------------------~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW-------------------------GGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC-------------------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 46899999999999999999975422 12467777888877666655544
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=88.65 E-value=2.8 Score=43.25 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
..++++.||+|+|||...-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35899999999999977543
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.59 E-value=4.2 Score=39.79 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHH---Hh----cC----CcEEEEcCCCchHHHHH
Q 020452 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAA---AH----QG----KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 39 l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~---l~----~g----~dvlv~apTGsGKT~~~ 89 (326)
+|.+++-++.+...|.-.-.+.-.+.+..- ++ +. ..+++.+|.|||||..+
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 477888888777766543333333333220 01 11 26899999999999654
|
|
| >TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.3 Score=44.80 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=35.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH--HHHHHHHHHHHHHc
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE--LALQVTDHLKEVAK 148 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~--L~~Q~~~~l~~~~~ 148 (326)
.+++++.|+||+|||..+...+.+.+ .. +..++++=|-.. |...+...++....
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i-~~----------------------g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDI-RR----------------------GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH-Hc----------------------CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 46899999999999987754444443 21 235666666654 77777776666643
|
Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.57 E-value=3 Score=38.34 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHHHHHh---cCC---cEEEEcCCCchHHHHHHH
Q 020452 54 FKEPTPIQKACIPAAAH---QGK---DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 54 ~~~p~~~Q~~~i~~~l~---~g~---dvlv~apTGsGKT~~~~l 91 (326)
+..++|||..++..+.. +|+ -+++.||.|+||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 34678999999877632 333 488999999999976644
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=4.2 Score=38.51 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=31.1
Q ss_pred cccccccCC-CCHHHHHHHHHCCCCCChHHHHHHHHHH--HhcCCcEEEEcCCCchHHHH
Q 020452 32 EFDAWNELR-LHPLLMKSIYRLGFKEPTPIQKACIPAA--AHQGKDIIGAAETGSGKTLA 88 (326)
Q Consensus 32 ~~~~f~~l~-l~~~i~~~l~~~g~~~p~~~Q~~~i~~~--l~~g~dvlv~apTGsGKT~~ 88 (326)
.-..|++|. +++.-...+..- .+.++=.++|..+ +-.|+..++.||.|+|||..
T Consensus 129 ~r~~f~~l~p~~p~~R~~le~~---~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 129 NRPLFENLTPLYPNERLRLETG---NPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred CCCCcccCCCCChhhcccccCC---CCcccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 445677773 444333233220 1334444555443 13688999999999999954
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.42 E-value=2.4 Score=42.86 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
=++++||.|-|||..+
T Consensus 328 ilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLA 343 (877)
T ss_pred eEEeecCCCCChhHHH
Confidence 3788999999999665
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=88.29 E-value=2 Score=43.53 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=61.1
Q ss_pred CeEEEEEeCcHH--------HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhc
Q 020452 123 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 123 ~~~~lil~Pt~~--------L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.+++|++|+.+ -+.++++.+...+ .+.++..++|+.+..+....+. ...+|+|+|. .+..
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 520 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEV 520 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeec
Confidence 458999999763 3445555555543 3678999999988765544332 4689999995 3444
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+ .++.+++++|+..+++.. ...+.....+..
T Consensus 521 G----vDiP~v~~VIi~~~~r~g----ls~lhQ~~GRvG 551 (630)
T TIGR00643 521 G----VDVPNATVMVIEDAERFG----LSQLHQLRGRVG 551 (630)
T ss_pred C----cccCCCcEEEEeCCCcCC----HHHHHHHhhhcc
Confidence 4 778899999988887532 234444555444
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.1 Score=41.75 Aligned_cols=130 Identities=20% Similarity=0.134 Sum_probs=61.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|.=+++.|.+|.|||...+-.+....... +..++|++. -.-..|+..++.......
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~----------------------g~~V~~fSl-EMs~~ql~~Rl~a~~s~i 284 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS----------------------KKGVAVFSM-EMSASQLAMRLISSNGRI 284 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc----------------------CCceEEEec-cCCHHHHHHHHHHhhCCC
Confidence 445567789999999965544333322111 224555543 223445555554443222
Q ss_pred CcEEEEEEcCCCHHHH------HHHHhcCCCEEEe-----CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC----
Q 020452 151 NVRVVPIVGGMSTEKQ------ERLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN---- 215 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~------~~~~~~~~~IlV~-----Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~---- 215 (326)
...- ...|.....+. ...+. +..+.|. |++.+...++.- ..-..+++||||=.+.|...
T Consensus 285 ~~~~-i~~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l----~~~~~~~lVvIDyLql~~~~~~~~ 358 (476)
T PRK08760 285 NAQR-LRTGALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRL----KREHDLGLIVIDYLQLMSVPGNSE 358 (476)
T ss_pred cHHH-HhcCCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHH----HHhcCCCEEEEecHHhcCCCCCCc
Confidence 2111 11233232221 11122 2345443 344554444321 11235889999999987422
Q ss_pred CCHHHHHHHHHhCC
Q 020452 216 GHFRELQSIIDMLP 229 (326)
Q Consensus 216 ~~~~~i~~il~~l~ 229 (326)
.....+..+.+.|+
T Consensus 359 ~r~~ei~~Isr~LK 372 (476)
T PRK08760 359 NRATEISEISRSLK 372 (476)
T ss_pred ccHHHHHHHHHHHH
Confidence 23345555555544
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.1 Score=39.47 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=33.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
..|.-+++.|++|+|||...+-.+.+.... +-+++|++-- +-..|+.+.+..+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-----------------------Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKS-----------------------GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----------------------CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 356678889999999997665444443311 3367777532 2356777777665
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.39 Score=45.63 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=34.8
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+-.+|++++--+...+.++.. .+..|.-++..-+ ..++.+++.||+|+|||..+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl----~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI----DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC----CCCceEEEECCCCCCHHHHH
Confidence 3445788887777766666552 2333322222221 24678999999999999765
|
|
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=88.15 E-value=3.6 Score=40.04 Aligned_cols=132 Identities=21% Similarity=0.205 Sum_probs=63.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 149 (326)
..|.=+++.|.+|.|||... +-+....... .+..++|++. -.-..|+..++-....
T Consensus 219 ~~G~LiiIaarPg~GKTafa-lnia~~~a~~---------------------~g~~Vl~fSl-EMs~~ql~~Rlla~~s- 274 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFA-MNLCENAAMA---------------------SEKPVLVFSL-EMPAEQIMMRMLASLS- 274 (472)
T ss_pred CCCcEEEEEeCCCCChHHHH-HHHHHHHHHh---------------------cCCeEEEEec-cCCHHHHHHHHHHhhC-
Confidence 34555677899999999654 4344333211 1224666543 2345555555544332
Q ss_pred CCcEEEEE-Ec-CCCHHHHH------HHHhcCCCEEEe-----CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCC
Q 020452 150 INVRVVPI-VG-GMSTEKQE------RLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216 (326)
Q Consensus 150 ~~~~v~~~-~g-~~~~~~~~------~~~~~~~~IlV~-----Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~ 216 (326)
++....+ .| ..+..+.. ..+...+.+.|- |+..+...++... .....++++|||-.+.|...+
T Consensus 275 -~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~---~~~~~~~lvvIDYLqli~~~~ 350 (472)
T PRK06904 275 -RVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY---RENGGLSLIMVDYLQLMRAPG 350 (472)
T ss_pred -CCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH---HhCCCCCEEEEecHHhcCCCC
Confidence 2222111 23 22322211 122223445552 4445444332210 111258899999999885332
Q ss_pred ----CHHHHHHHHHhCC
Q 020452 217 ----HFRELQSIIDMLP 229 (326)
Q Consensus 217 ----~~~~i~~il~~l~ 229 (326)
....+..+.+.|+
T Consensus 351 ~~~~r~~ei~~isr~LK 367 (472)
T PRK06904 351 FEDNRTLEIAEISRSLK 367 (472)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 2344555555554
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.1 Score=42.96 Aligned_cols=21 Identities=33% Similarity=0.061 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.|++|+|||...+-
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~ 214 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALN 214 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHH
Confidence 445678899999999955543
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=2.2 Score=40.35 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=53.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
..++||.|+++.-+..+++.+... ++.+..++|+....++...+. ...+|+|||- .+..| .++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~~G----iDi 333 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLARG----IDV 333 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cccCC----cCc
Confidence 347899999999888888777654 778999999988766544332 4689999993 34444 777
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.+++++|.-
T Consensus 334 p~v~~VI~~ 342 (401)
T PTZ00424 334 QQVSLVINY 342 (401)
T ss_pred ccCCEEEEE
Confidence 888888853
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=88.07 E-value=0.81 Score=40.21 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
+...-++++.|++|||||. +++-++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~-li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTT-LIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHH-HHHHHHHh
Confidence 3334588999999999994 44545543
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.87 Score=40.28 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=33.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.|..+++.+++|+|||...+-.+.+.+.+ +-+++|+. +.+-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-----------------------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------------------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-----------------------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 46678999999999996654444443311 22577776 444555666666665
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.6 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+-+++.+|+|+|||+.+
T Consensus 338 KGVLLvGPPGTGKTlLA 354 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLA 354 (752)
T ss_pred CceEEeCCCCCchhHHH
Confidence 47999999999999654
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=7.1 Score=39.70 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=57.1
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.|+|+.-+..+.+.+... ++++..++|+.........+ ....+|+|||- .+.+| ++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~rG----fd 511 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLREG----LD 511 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHhCC----cc
Confidence 3568999999999888888777664 78888999987765443322 23578888882 44554 67
Q ss_pred CCCeeEEeecchhHh
Q 020452 198 LHTLSFFVLDEADRM 212 (326)
Q Consensus 198 l~~l~~lViDEah~l 212 (326)
+..++++|+=|++..
T Consensus 512 lp~v~lVii~d~eif 526 (652)
T PRK05298 512 IPEVSLVAILDADKE 526 (652)
T ss_pred ccCCcEEEEeCCccc
Confidence 888999988777743
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.83 E-value=5.5 Score=36.20 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----cEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK-----DIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~-----dvlv~apTGsGKT~~~ 89 (326)
+|=-.|++.-=-+-..++|++.=+ -|+ -+|.++ .|+ -+++-+|+|+||+..+
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlF-tGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLF-TGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhee---ecc---cchhhh-cCCCCcceeEEEeCCCCCcHHHHH
Confidence 334456666555555666655211 000 134554 454 4899999999998544
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=3.1 Score=40.25 Aligned_cols=20 Identities=35% Similarity=0.139 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.|.-+++.|++|.|||...+
T Consensus 202 ~G~livIaarpg~GKT~~al 221 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFAL 221 (448)
T ss_pred CCceEEEEeCCCCCchHHHH
Confidence 44567889999999996554
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=87.76 E-value=5 Score=30.68 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=52.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH---h-cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.+++..-+.++++.+.. .+..+..++|+.......... . ....|+++|.. +..+ .++
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~~~G----~d~ 94 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----IARG----IDL 94 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----hhcC----cCh
Confidence 34799999999999988888876 367888899988755443322 2 34578888852 2222 556
Q ss_pred CCeeEEeecchh
Q 020452 199 HTLSFFVLDEAD 210 (326)
Q Consensus 199 ~~l~~lViDEah 210 (326)
...+.+|+.+.+
T Consensus 95 ~~~~~vi~~~~~ 106 (131)
T cd00079 95 PNVSVVINYDLP 106 (131)
T ss_pred hhCCEEEEeCCC
Confidence 667778777664
|
|
| >TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
Probab=87.62 E-value=1.4 Score=47.90 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=45.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
.-.++++|.|+.|||||.+..--++..+... ...-++++|+-|+.-+.++.+++...+.
T Consensus 8 dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~--------------------~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 8 DPKTSAWVSANAGSGKTHVLTQRVIRLLLNG--------------------VPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHcC--------------------CCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 3457899999999999988766666655321 1123799999999999998888877654
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.60 E-value=3.6 Score=35.40 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|+=-++.||.++|||.-.
T Consensus 4 G~i~vi~GpMfSGKTteL 21 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL 21 (211)
T ss_pred eEEEEEECCCCChHHHHH
Confidence 444578999999999543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=3.8 Score=43.14 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=22.2
Q ss_pred eEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 202 SFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 202 ~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
-+||||++|.+.+......+..++..++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 4799999999865555667888888877
|
|
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.52 E-value=9.4 Score=31.92 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
...++||+||+-..++.++ .+.+..+++.-|
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp 146 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRP 146 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC
Confidence 4589999999999888876 455666666544
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.6 Score=47.23 Aligned_cols=75 Identities=15% Similarity=0.318 Sum_probs=53.4
Q ss_pred CeEEEEEeCcH---HHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 123 HLRALIITPTR---ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 123 ~~~~lil~Pt~---~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
+..+||.|+++ +-|.++++.++.. |+++..++|+..............+|+|||... .+.+.+| +++.
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~----g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~-tdv~aRG----IDip 396 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH----GVKAVAYHATKPKEDYEKFAEGEIDVLIGVASY-YGTLVRG----LDLP 396 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC----CceEEEEeCCCCHHHHHHHHcCCCCEEEEeccc-cCccccc----CCCC
Confidence 34689999999 8888877777654 889999999986555555555688999998411 2334443 5666
Q ss_pred C-eeEEee
Q 020452 200 T-LSFFVL 206 (326)
Q Consensus 200 ~-l~~lVi 206 (326)
+ ++++|+
T Consensus 397 ~~V~~vI~ 404 (1171)
T TIGR01054 397 ERVRYAVF 404 (1171)
T ss_pred ccccEEEE
Confidence 6 677776
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=2.4 Score=42.70 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=43.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp 181 (326)
+.++||.|+|+.-+.++++.+... ++.+..++|+.+........ ....+|+|+|.
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~ 294 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV 294 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec
Confidence 447899999999999999888765 78899999998876554333 24678999995
|
|
| >TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family | Back alignment and domain information |
|---|
Probab=87.45 E-value=2 Score=43.28 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH--HHHHHHHHHHHHHHc
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR--ELALQVTDHLKEVAK 148 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~--~L~~Q~~~~l~~~~~ 148 (326)
..++++.|+||+|||..+...+.+.+.. +..++++=|-. ++...++..++.+.+
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~-----------------------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR-----------------------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc-----------------------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4689999999999998877666555421 33677777766 466666776766654
|
Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=87.41 E-value=3.3 Score=34.09 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=13.9
Q ss_pred EEEEcCCCchHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGL 91 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l 91 (326)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999977544
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.6 Score=42.26 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=43.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp 181 (326)
+.++||.|+|+..+.++++.+... ++.+..++|+.+........ ....+|||+|-
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~ 282 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN 282 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 347899999999999999888654 78889999998876554433 24678999994
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.39 E-value=0.65 Score=45.82 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=34.0
Q ss_pred ccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYR---LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~---~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
-.+|++.|=-+.+...|+. ..+++|..++.--+ ....-+++++|+|+|||+.+-.
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi----~~PsGvLL~GPPGCGKTLlAKA 564 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI----DAPSGVLLCGPPGCGKTLLAKA 564 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC----CCCCceEEeCCCCccHHHHHHH
Confidence 3467777766666665544 23333333333322 2356799999999999987643
|
|
| >PRK13880 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=0.59 Score=47.19 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 142 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 142 (326)
..++++.||||||||..+++|-+-.. +..+||+=|-.|+.......
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~-------------------------~~S~VV~D~KGE~~~~Tag~ 220 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW-------------------------GHSSVITDLKGELWALTAGW 220 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC-------------------------CCCEEEEeCcHHHHHHHHHH
Confidence 36899999999999999998877532 22577777888876554444
|
|
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.99 Score=42.73 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLE 99 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~ 99 (326)
..+++++.|.||||||. ++..++..+..
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~ 41 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRA 41 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHH
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHH
Confidence 56899999999999996 44666666543
|
It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.3 Score=41.08 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHh---cCC---cEEEEcCCCchHHHHHHHH
Q 020452 57 PTPIQKACIPAAAH---QGK---DIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 57 p~~~Q~~~i~~~l~---~g~---dvlv~apTGsGKT~~~~l~ 92 (326)
.+|||+..|..+.+ +|+ -.++.||.|.||+..+...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~ 44 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH
Confidence 46788888876532 333 5789999999999776443
|
|
| >TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.82 Score=45.95 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=35.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
.++++.||||+|||..+++|-+-.. +.-+||+=|..|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------------------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------------------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------------------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 6899999999999999999964422 124777778878776655544443
|
This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems. |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.08 E-value=0.84 Score=42.20 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=35.7
Q ss_pred ccccccccCC-CCHHHHHHHHH---CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELR-LHPLLMKSIYR---LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~-l~~~i~~~l~~---~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.|-.+|++.| |.++|. .+++ +..++|--+++--| ...+-+++.+|+|||||+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~-EirE~VELPL~~PElF~~~GI----~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQ-EIREVVELPLKNPELFEELGI----DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCChhhccCHHHHHH-HHHHHhcccccCHHHHHHcCC----CCCCceEeeCCCCCcHHHHH
Confidence 4455788885 444444 4543 45555555555443 45688999999999999765
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=87.07 E-value=1.3 Score=40.61 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
++.+++.|++|+|||.....
T Consensus 156 ~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999976643
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.59 Score=31.81 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|..+++.+++|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999654
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.98 E-value=4.7 Score=34.73 Aligned_cols=48 Identities=4% Similarity=0.106 Sum_probs=30.2
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..+-+++|+|-...+....-...+...+..++... ..-.+|++|+.-.
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~---------------------d~gKvIilTvhp~ 168 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS---------------------DLGKVIILTVHPS 168 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH---------------------hCCCEEEEEeChh
Confidence 34567899999998775444445555555444211 2357888988764
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=3.9 Score=38.08 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=24.9
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCC
Q 020452 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEP 57 (326)
Q Consensus 28 ~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p 57 (326)
+.+.++....+.++++...+.|++.||...
T Consensus 26 ~~~~~~~~l~~~g~~~~~~~kL~~~g~~tv 55 (344)
T PLN03187 26 DLFESIDKLISQGINAGDVKKLQDAGIYTC 55 (344)
T ss_pred hcccCHHHHhhCCCCHHHHHHHHHcCCCcH
Confidence 346778888889999999999999988653
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.8 Score=42.57 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=19.7
Q ss_pred CCeeEEeecchhHhhhCC----CHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENG----HFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~----~~~~i~~il~~l~ 229 (326)
..+++||||=.+.|.... ....+..+.+.|+
T Consensus 374 ~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK 408 (505)
T PRK05636 374 HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLK 408 (505)
T ss_pred cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 358899999999885321 2344555555544
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=86.81 E-value=3.2 Score=43.60 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
..+.++.||+|+|||...-.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35899999999999977643
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=86.67 E-value=2.6 Score=40.89 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=20.0
Q ss_pred CeeEEeecchhHhhhC----CCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIEN----GHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~----~~~~~i~~il~~l~ 229 (326)
.+++||||=.+.|... .....+..|.+.|+
T Consensus 324 ~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK 357 (460)
T PRK07004 324 KLGLIIIDYLQLMSGSSQGENRATEISEISRSLK 357 (460)
T ss_pred CCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHH
Confidence 4789999999988632 23445666665555
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=3 Score=41.08 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=54.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
.+++||.++++.-+..+++.+... .++++..++|+....+....+ ....+|||+|. .+..| +++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~rG----iDi 434 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLGRG----VDL 434 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhhcc----CCc
Confidence 357999999999888877766543 467889999998876654443 34678999995 34444 778
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.++++||.=
T Consensus 435 p~v~~VI~~ 443 (518)
T PLN00206 435 LRVRQVIIF 443 (518)
T ss_pred ccCCEEEEe
Confidence 889888853
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=86.44 E-value=2.8 Score=40.78 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il 94 (326)
.|.-+++.|.||.|||...+--+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~ 214 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMAL 214 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHH
Confidence 445567789999999965544333
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=86.30 E-value=3 Score=35.92 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.=+.+.+++|+|||...+..+..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 3556788999999999776544433
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.89 Score=43.42 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..+++++.|+||+|||.. +..++..+
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~ 66 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASI 66 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHH
Confidence 457999999999999975 34444444
|
TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=86.17 E-value=3.1 Score=41.65 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=64.7
Q ss_pred CCeEEEEEeCcHHH--------HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hh-cCCCEEEeCcHHHHHHHh
Q 020452 122 GHLRALIITPTREL--------ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELMS 189 (326)
Q Consensus 122 ~~~~~lil~Pt~~L--------~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~~IlV~Tp~~l~~ll~ 189 (326)
.|-++.||||..+= |...++.++.++. +.++++++|.+...+..+. .+ +..+|+|+|. .+.
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~--~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT-----VIE 544 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLP--ELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT-----VIE 544 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcc--cceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee-----EEE
Confidence 46699999998763 4445555554433 5689999999986554332 22 4789999995 233
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
-+ ++..+-.++||..|+++. ..++..+..+..
T Consensus 545 VG----VdVPnATvMVIe~AERFG----LaQLHQLRGRVG 576 (677)
T COG1200 545 VG----VDVPNATVMVIENAERFG----LAQLHQLRGRVG 576 (677)
T ss_pred ec----ccCCCCeEEEEechhhhh----HHHHHHhccccC
Confidence 33 678888999999999875 456666665554
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.13 E-value=2.8 Score=40.69 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
..+.+||.+.++.=|.-+++.+.+. +.++..++|+...++....+. +..+|+|||-- ..+ .++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv-----AgR----GID 582 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV-----AGR----GID 582 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc-----ccc----CCC
Confidence 4668999999999888888887776 789999999998776655443 36799999942 222 277
Q ss_pred CCCeeEEe
Q 020452 198 LHTLSFFV 205 (326)
Q Consensus 198 l~~l~~lV 205 (326)
..++.+||
T Consensus 583 IpnVSlVi 590 (673)
T KOG0333|consen 583 IPNVSLVI 590 (673)
T ss_pred CCccceee
Confidence 78887766
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=86.08 E-value=0.63 Score=36.84 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
++++.+|+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999765
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=85.97 E-value=1.4 Score=41.32 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHH
Q 020452 66 PAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 66 ~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
..++..+.++++.+|||+|||..+
T Consensus 113 ~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 113 AKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHH
Confidence 344578899999999999999665
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=85.84 E-value=1.3 Score=38.39 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|..+++.+++|+|||....-.+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 5678899999999999765443333
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=5.1 Score=39.32 Aligned_cols=23 Identities=26% Similarity=0.043 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.|.=+++.|++|.|||...+--+
T Consensus 216 ~g~livIaarpg~GKT~~al~ia 238 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIA 238 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHH
Confidence 34456889999999996654433
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=85.72 E-value=1.8 Score=37.57 Aligned_cols=25 Identities=28% Similarity=0.105 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.-+.+.+++|+|||...+-.+..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566789999999999776554443
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.9 Score=41.10 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHCCCCC--ChHHHH-HHHH---HHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 40 RLHPLLMKSIYRLGFKE--PTPIQK-ACIP---AAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 40 ~l~~~i~~~l~~~g~~~--p~~~Q~-~~i~---~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
...+++--.|...|+.. ++.-|+ ..+. .++.++.|++..+|+|+|||..|..
T Consensus 171 T~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 171 TLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred CHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 34445555556688842 222111 1121 1346789999999999999977754
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=85.66 E-value=0.75 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 020452 75 IIGAAETGSGKTLAFG 90 (326)
Q Consensus 75 vlv~apTGsGKT~~~~ 90 (326)
+++.||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5889999999997653
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.60 E-value=2 Score=42.84 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+++-.++|+|||..-+|..-...+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 45668999999998888877777777776554
|
|
| >PRK13876 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=1 Score=45.56 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 144 (326)
..++++.||||||||..+++|-+-.. ..-+||+=|--|+........+
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~-------------------------~~S~VV~D~KGEl~~~Ta~~R~ 191 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW-------------------------PGSAIVHDIKGENWQLTAGFRA 191 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC-------------------------CCCEEEEeCcchHHHHHHHHHH
Confidence 36899999999999999999976643 1146666677776665544433
|
|
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.56 E-value=3.3 Score=42.08 Aligned_cols=72 Identities=14% Similarity=-0.060 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+..-|..|....+ ..+--++++|+|+|||++-+..+-..+ .+. ........++++|-|..-
T Consensus 378 ildsSq~~A~qs~l-tyelsliqgppGTgkt~vtlkav~tLL-~n~----------------s~~~~~epIlvvC~Tnha 439 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKL-TYELSLIQGPPGTGKTLVTLKAVDTLL-LNS----------------SGYTEPEPILVVCLTNHA 439 (1025)
T ss_pred eecHHHHHHHHHHh-hhhhheeecCCCCCceeehHHHHHHHH-hcc----------------cccccccceeeeehhhHH
Confidence 45667999998874 667779999999999999866554443 331 112334468999999998
Q ss_pred HHHHHHHHHH
Q 020452 136 ALQVTDHLKE 145 (326)
Q Consensus 136 ~~Q~~~~l~~ 145 (326)
+.|....+..
T Consensus 440 vdq~ligiy~ 449 (1025)
T KOG1807|consen 440 VDQYLIGIYY 449 (1025)
T ss_pred HHHHHHHHHh
Confidence 8887766654
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=85.54 E-value=2.5 Score=37.45 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=63.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|.=+++.|.+|.|||...+-.+.+.. .. ++..++|++.--. ..++..++-......
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a-~~---------------------~~~~vly~SlEm~-~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAA-LN---------------------GGYPVLYFSLEMS-EEELAARLLARLSGV 74 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHH-HT---------------------TSSEEEEEESSS--HHHHHHHHHHHHHTS
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHH-Hh---------------------cCCeEEEEcCCCC-HHHHHHHHHHHhhcc
Confidence 344578889999999966544444433 21 1346788775321 223333333332221
Q ss_pred CcEEEEEEcCCCHHHHHH-------HHhcCCCEEEeC----cHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC----
Q 020452 151 NVRVVPIVGGMSTEKQER-------LLKARPELVVGT----PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN---- 215 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~-------~~~~~~~IlV~T----p~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~---- 215 (326)
.. ..+..+.-...... .+....-.+..+ ++.+...+..- ......+++||||=.|.|-..
T Consensus 75 ~~--~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~---~~~~~~~~~v~IDyl~ll~~~~~~~ 149 (259)
T PF03796_consen 75 PY--NKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRL---KREGKKVDVVFIDYLQLLKSEDSSD 149 (259)
T ss_dssp TH--HHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHH---HHHSTTEEEEEEEEGGGSBTSCSSS
T ss_pred hh--hhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHH---HhhccCCCEEEechHHHhcCCCCCC
Confidence 11 11111211111111 122222223343 44555555321 122267899999999988653
Q ss_pred CCHHHHHHHHHhCC
Q 020452 216 GHFRELQSIIDMLP 229 (326)
Q Consensus 216 ~~~~~i~~il~~l~ 229 (326)
+....+..+...|+
T Consensus 150 ~~~~~~~~i~~~Lk 163 (259)
T PF03796_consen 150 NRRQEIGEISRELK 163 (259)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34566666655544
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=85.37 E-value=2.1 Score=42.18 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 198 l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+++-+++|+||+-.-+|......+...+..+.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~ 517 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL 517 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 56678999999998887766777766666553
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
Probab=85.35 E-value=2 Score=36.53 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
...++++.|.||||||.+....+...+
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHH
Confidence 445899999999999977655444444
|
The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=85.32 E-value=4.5 Score=35.85 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHH
Q 020452 70 HQGKDIIGAAETGSGKTL 87 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~ 87 (326)
..|+.+++.+|.|+|||.
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 478999999999999995
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=3.7 Score=42.00 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=60.3
Q ss_pred CeEEEEEeCcHH--------HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhc
Q 020452 123 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 123 ~~~~lil~Pt~~--------L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.+++|+||+.+ -+.+.++.+...+. +.++..++|+.+..+...... ...+|+|||. .+..
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~--~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 543 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP--ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIEV 543 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ceee
Confidence 458999999643 34455555555432 478999999988765544332 4679999994 3444
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
+ .++.+++++|+..+++.. ...+.....+..
T Consensus 544 G----iDip~v~~VIi~~~~r~g----ls~lhQ~~GRvG 574 (681)
T PRK10917 544 G----VDVPNATVMVIENAERFG----LAQLHQLRGRVG 574 (681)
T ss_pred C----cccCCCcEEEEeCCCCCC----HHHHHHHhhccc
Confidence 4 778899999998887532 234444444444
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=85.24 E-value=1.5 Score=36.10 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=14.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.++.+++.|+.|+|||... -.++..+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll-~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLL-RALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4568999999999999653 3344444
|
|
| >COG4185 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.22 E-value=0.32 Score=39.74 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIM 94 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il 94 (326)
.++.+|.|+|||..|.....
T Consensus 5 ~IvaG~NGsGKstv~~~~~~ 24 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLA 24 (187)
T ss_pred EEEecCCCCCceeeeeccch
Confidence 47789999999988855433
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.16 E-value=12 Score=37.85 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=34.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHH
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 272 (326)
....+|++||.|.|... ..+.+..++......+ .+.=+|+...|+-.++.+.
T Consensus 507 ~~~~VvLiDElD~Lvtr-~QdVlYn~fdWpt~~~---------------------sKLvvi~IaNTmdlPEr~l 558 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTR-SQDVLYNIFDWPTLKN---------------------SKLVVIAIANTMDLPERLL 558 (767)
T ss_pred CCCEEEEeccHHHHhcc-cHHHHHHHhcCCcCCC---------------------CceEEEEecccccCHHHHh
Confidence 34568999999998853 3666777766543211 4567888888887665443
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=85.05 E-value=0.74 Score=36.60 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=18.6
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
+..|.-+++.++.|+|||.. .-.+...
T Consensus 19 l~~~~~i~l~G~lGaGKTtl-~~~l~~~ 45 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTL-VQGLLQG 45 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHH-HHHHHHH
Confidence 34566778999999999944 3444443
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=84.93 E-value=6.5 Score=36.76 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=50.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+.++||+++|+.-++.+++.++.. ..+..+..++|........+.. ..+|+|||. .+..+ .++...
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~rG----iDi~~~- 337 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDVG----VDFKRD- 337 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhcc----cCCCCc-
Confidence 458999999999999999988874 2345777888888876654433 578999996 33433 555544
Q ss_pred EEeec
Q 020452 203 FFVLD 207 (326)
Q Consensus 203 ~lViD 207 (326)
++|+|
T Consensus 338 ~vi~~ 342 (357)
T TIGR03158 338 WLIFS 342 (357)
T ss_pred eEEEC
Confidence 56664
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.92 E-value=3.1 Score=38.37 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHhc-C---CcEEEEcCCCchHHHHHHHH
Q 020452 57 PTPIQKACIPAAAHQ-G---KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~-g---~dvlv~apTGsGKT~~~~l~ 92 (326)
.+|||+..|..+... + +.+++.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 368888888877432 2 35789999999999776543
|
|
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=7.1 Score=38.04 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=20.0
Q ss_pred CeeEEeecchhHhhhC----CCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIEN----GHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~----~~~~~i~~il~~l~ 229 (326)
.+++||||=.+.|... .....+..+.+.|+
T Consensus 336 ~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK 369 (471)
T PRK08006 336 GLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLK 369 (471)
T ss_pred CCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHH
Confidence 5899999999987522 23445666655554
|
|
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=84.80 E-value=7.4 Score=37.82 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=19.4
Q ss_pred CeeEEeecchhHhhhCC----CHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIENG----HFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~----~~~~i~~il~~l~ 229 (326)
.+++||||-.+.|...+ ....+..+.+.|+
T Consensus 329 ~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK 362 (464)
T PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLK 362 (464)
T ss_pred CCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHH
Confidence 48899999999885222 2344555555554
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=84.67 E-value=4.5 Score=39.77 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 146 (326)
|.-+++.+++|+|||....-.+.+.+. .+-+++|++-. +-..++.+.+..+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~-----------------------~g~~~~yis~e-~~~~~i~~~~~~~ 323 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR-----------------------RGERCLLFAFE-ESRAQLIRNARSW 323 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----------------------CCCcEEEEEec-CCHHHHHHHHHHc
Confidence 557788999999999766544443321 13367777643 4466776666655
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=84.59 E-value=11 Score=39.43 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=53.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhc----CCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
..+||.+|++.-+..+++.++.... .++.+..++|+.+..++.+.+.. ...|||+|. ....+ +.+.
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAErg----ItIp 279 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAETS----LTIE 279 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHhhc----cccc
Confidence 3799999999999998888876432 36889999999998887776653 357999995 23332 6677
Q ss_pred CeeEEe
Q 020452 200 TLSFFV 205 (326)
Q Consensus 200 ~l~~lV 205 (326)
++++||
T Consensus 280 ~V~~VI 285 (819)
T TIGR01970 280 GIRVVI 285 (819)
T ss_pred CceEEE
Confidence 777554
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 326 | ||||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 3e-29 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 5e-29 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 2e-27 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 7e-27 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 5e-25 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 1e-24 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 1e-22 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-22 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 2e-21 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 3e-21 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 3e-21 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 4e-21 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 4e-21 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 7e-21 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 9e-21 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 1e-20 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 2e-20 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-20 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 3e-20 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 3e-20 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 4e-20 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 4e-20 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 1e-19 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 1e-19 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 3e-19 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 3e-19 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 6e-19 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 6e-19 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 6e-19 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 7e-19 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 8e-19 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 1e-18 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 2e-18 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 2e-18 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 3e-18 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 4e-18 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 5e-18 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 6e-18 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 9e-18 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 1e-17 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 4e-16 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 6e-16 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 6e-16 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 7e-16 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 8e-16 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 8e-16 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 1e-15 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 4e-12 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 4e-09 | ||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 3e-07 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 3e-07 |
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 2e-70
Identities = 82/265 (30%), Positives = 127/265 (47%), Gaps = 50/265 (18%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D+ E E + +L + +L ++ +LG+ +PT IQ IP A QG+DII
Sbjct: 26 HDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDII 84
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
G AETGSGKT AF LPI+ LLE ++ L AL++TPTRELA
Sbjct: 85 GLAETGSGKTGAFALPILNALLETPQR--------------------LFALVLTPTRELA 124
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
Q+++ + + I V+ IVGG+ + Q L +P +++ TPGRL + +
Sbjct: 125 FQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT--KGF 182
Query: 197 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256
L L + V+DEADR++ E+ I+ ++P + R
Sbjct: 183 NLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------RDR 218
Query: 257 QTLVFSATIALSADFRKKLKHGSLK 281
+T +FSAT+ +KL+ +LK
Sbjct: 219 KTFLFSATM---TKKVQKLQRAALK 240
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 1e-67
Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 46/250 (18%)
Query: 17 DDAEEELVSEAEISTEFDA--WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKD 74
++ L+ E + +++ L +K + ++ T IQK I A QGKD
Sbjct: 6 RESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKD 64
Query: 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134
++GAA+TGSGKTLAF +P+++ L + + L LII+PTRE
Sbjct: 65 VLGAAKTGSGKTLAFLVPVLEALYRLQ----------------WTSTDGLGVLIISPTRE 108
Query: 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194
LA Q + L++V K + I+GG + + + ++V TPGRL + M E
Sbjct: 109 LAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMD--ETV 165
Query: 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
L VLDEADR+++ G + ++I+ LP K
Sbjct: 166 SFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------------------K 201
Query: 255 KRQTLVFSAT 264
KRQTL+FSAT
Sbjct: 202 KRQTLLFSAT 211
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 3e-65
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 45/254 (17%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNEL--RLHPLLMKSIYRLGFKEPTPIQKACIPAAAH 70
++ + L + E ++ L ++ +K+I +GF T IQ I
Sbjct: 31 NDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL- 89
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
+G+D++ AA+TGSGKTLAF +P ++ +++ R + P+ LI++
Sbjct: 90 EGRDLLAAAKTGSGKTLAFLIPAVELIVKLR----------------FMPRNGTGVLILS 133
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELA+Q LKE+ I+GG + + + L ++V TPGRL + M
Sbjct: 134 PTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQ- 192
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
L V+DEADR+++ G EL+ II +LP
Sbjct: 193 -NTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP--------------------- 230
Query: 251 LQRKKRQTLVFSAT 264
+RQT++FSAT
Sbjct: 231 ---TRRQTMLFSAT 241
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-63
Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 44/259 (16%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AHQ 71
S +E+ E + + + E L + K+I R+ F TP+Q+ I + +
Sbjct: 3 SKLIHVPKEDNSKEVTLDSLLE---EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSE 59
Query: 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131
D+I A+TG+GKT AF +PI Q L+ K+ + ++A+I+ P
Sbjct: 60 DHDVIARAKTGTGKTFAFLIPIFQHLIN----------------TKFDSQYMVKAVIVAP 103
Query: 132 TRELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGRLWE 186
TR+LALQ+ +K++ V +VGG ++ K RP +V+ TPGRL +
Sbjct: 104 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID 163
Query: 187 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCV 246
++ + + + VLDEADR++E G +L++I +L N +
Sbjct: 164 VLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADN-------- 213
Query: 247 TVSSLQRKKRQTLVFSATI 265
+TL+FSAT+
Sbjct: 214 ---------IKTLLFSATL 223
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 3e-63
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 44/260 (16%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AH 70
S +E+ E + + + E L + K+I R+ F TP+Q+ I +
Sbjct: 53 FSKLIHVPKEDNSKEVTLDSLLE---EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSS 109
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
+ D+I A+TG+GKT AF +PI Q L+ K+ + ++A+I+
Sbjct: 110 EDHDVIARAKTGTGKTFAFLIPIFQHLI----------------NTKFDSQYMVKAVIVA 153
Query: 131 PTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGRLW 185
PTR+LALQ+ +K++ V +VGG ++ K RP +V+ TPGRL
Sbjct: 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLI 213
Query: 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTC 245
+++ + + + VLDEADR++E G +L++I +L N +
Sbjct: 214 DVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADN------- 264
Query: 246 VTVSSLQRKKRQTLVFSATI 265
+TL+FSAT+
Sbjct: 265 ----------IKTLLFSATL 274
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 1e-62
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 52/233 (22%)
Query: 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
P ++++I L F +PT IQ+ IP A +G+ ++G ++TG+GKT A+ LPIM++
Sbjct: 7 TRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEK 65
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NV 152
+ ER ++A+I PTRELA Q+ ++ K +
Sbjct: 66 IKPERA--------------------EVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105
Query: 153 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
++GG +K L +P +V+GTPGR+ + + + +++HT V+DEAD M
Sbjct: 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI---REQALDVHTAHILVVDEADLM 162
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ G ++ I +P K Q LVFSATI
Sbjct: 163 LDMGFITDVDQIAARMP------------------------KDLQMLVFSATI 191
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 2e-62
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 35/229 (15%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++EL+L P + +I ++ PTPIQK IPA + +DI+ A+TGSGKT AF +PI+
Sbjct: 25 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
L+ + ++Y+ + + LI+ PTRELA+Q+ ++ + +R
Sbjct: 84 HLVCQ-----------DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSC 132
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG T Q R ++ L+V TPGRL + + EK+ + L + VLDEADRM++
Sbjct: 133 VVYGGADTHSQIREVQMGCHLLVATPGRLVDFI---EKNKISLEFCKYIVLDEADRMLDM 189
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
G +++ II+ M RQTL+FSAT
Sbjct: 190 GFEPQIRKIIEESNMP--------------------SGINRQTLMFSAT 218
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 2e-61
Identities = 79/228 (34%), Positives = 114/228 (50%), Gaps = 47/228 (20%)
Query: 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
+ L P ++++++ G PTPIQ A +P A +GKD+IG A TG+GKTLAF LPI +R
Sbjct: 4 KDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAER 62
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
L +E+ RAL++TPTRELALQV L VA + +VV
Sbjct: 63 LAPSQERG-----------------RKPRALVLTPTRELALQVASELTAVAPHL--KVVA 103
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
+ GG KQ+ L + VV TPGR + + + +++L + VLDEAD M+ G
Sbjct: 104 VYGGTGYGKQKEALLRGADAVVATPGRALDYL---RQGVLDLSRVEVAVLDEADEMLSMG 160
Query: 217 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
E+++++ P RQTL+FSAT
Sbjct: 161 FEEEVEALLSATP------------------------PSRQTLLFSAT 184
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 3e-59
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 51/230 (22%)
Query: 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
NEL L ++ +I GF++PT IQ IP + +I+ A TGSGKT +F +P+++
Sbjct: 9 NELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+ + A+I+TPTRELA+QV D ++ + N+++
Sbjct: 69 V---------------------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
I GG + Q + LK +VVGTPGR+ + + + + L + +F+LDEAD M+ G
Sbjct: 108 IYGGKAIYPQIKALK-NANIVVGTPGRILDHI---NRGTLNLKNVKYFILDEADEMLNMG 163
Query: 217 HFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
F + ++ I++ K ++ L+FSAT+
Sbjct: 164 -FIKDVEKILNACN------------------------KDKRILLFSATM 188
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 9e-59
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 53/239 (22%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKT 86
F+ + L L+ I+ GF++P+PIQ+ IP A G+DI+ A+ G+GKT
Sbjct: 17 NTKGNTFE---DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKT 72
Query: 87 LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 146
AF +P ++++ + ++ALI+ PTRELALQ + ++ +
Sbjct: 73 AAFVIPTLEKVKPK--------------------LNKIQALIMVPTRELALQTSQVVRTL 112
Query: 147 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 206
K + + GG + L ++VGTPGR+ +L + + +L S F++
Sbjct: 113 GKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA---SRKVADLSDCSLFIM 169
Query: 207 DEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
DEAD+M+ F+ ++ I+ LP Q+L+FSAT
Sbjct: 170 DEADKMLSRD-FKTIIEQILSFLP------------------------PTHQSLLFSAT 203
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 1e-58
Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 55/225 (24%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
++ + ++I +GFK T +Q IP QGK+++ A+TGSGKT A+ +PI++
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL---- 55
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
+++L++TPTREL QV H++++ + ++ +V + GG
Sbjct: 56 ----------------------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGG 93
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
M + Q ++ ++VV TPGRL +L K +++L + ++DEAD M E G +
Sbjct: 94 MPYKAQINRVR-NADIVVATPGRLLDLW---SKGVIDLSSFEIVIIDEADLMFEMGFIDD 149
Query: 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ I+ ++ T +FSATI
Sbjct: 150 IKIILAQTS------------------------NRKITGLFSATI 170
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 2e-58
Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 48/236 (20%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
E +++ L+++I GF+ PTPIQ IP G++++ +A TGSGKTLAF +PI
Sbjct: 29 QLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPI 87
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
+ +L + RALII+PTRELA Q+ L ++++G R
Sbjct: 88 LMQLKQ-------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFR 128
Query: 154 VVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
+ I +K + +++V TP RL L+ ++L ++ + V+DE+D++
Sbjct: 129 IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQD-PPGIDLASVEWLVVDESDKL 187
Query: 213 IENGH--FRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
E+G FR+ L SI K + +FSAT
Sbjct: 188 FEDGKTGFRDQLASIFLACTS-----------------------HKVRRAMFSATF 220
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 4e-58
Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 51/254 (20%)
Query: 14 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 73
NGPD E E V E+ + D+++++ L L++ IY GF++P+ IQ+ I +G
Sbjct: 20 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGY 78
Query: 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 133
D+I A++G+GKT F + I+Q++ + +AL++ PTR
Sbjct: 79 DVIAQAQSGTGKTATFAISILQQIELD--------------------LKATQALVLAPTR 118
Query: 134 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGE 192
ELA Q+ + + + +GG + + + L+ P ++VGTPGR+++++
Sbjct: 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML---N 175
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 251
+ + + FVLDEAD M+ G F++ + I L
Sbjct: 176 RRYLSPKYIKMFVLDEADEMLSRG-FKDQIYDIFQKLN---------------------- 212
Query: 252 QRKKRQTLVFSATI 265
Q ++ SAT+
Sbjct: 213 --SNTQVVLLSATM 224
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 5e-58
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 51/250 (20%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
D + + + E + L L +++ + GF+ P+P+Q IP G D+I
Sbjct: 7 DLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CGLDLI 65
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
A++G+GKT F + L+ E + LI+ PTRE+A
Sbjct: 66 VQAKSGTGKTCVFSTIALDSLVLE--------------------NLSTQILILAPTREIA 105
Query: 137 LQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 195
+Q+ + + + + +GG + + LK + + VG+PGR+ +L+ E
Sbjct: 106 VQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLI---ELDY 161
Query: 196 VELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254
+ ++ F+LDEAD+++E G F+E + I LP
Sbjct: 162 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------------------A 197
Query: 255 KRQTLVFSAT 264
+Q L SAT
Sbjct: 198 SKQMLAVSAT 207
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 1e-57
Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 53/250 (21%)
Query: 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDII 76
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+D+I
Sbjct: 23 TKVEFETSEEVDVTPTFD---TMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVI 78
Query: 77 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 136
+++G+GKT F + ++Q L + +ALI+ PTRELA
Sbjct: 79 AQSQSGTGKTATFSISVLQCLDIQ--------------------VRETQALILAPTRELA 118
Query: 137 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 196
+Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 119 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSL 175
Query: 197 ELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255
+ VLDEAD M+ G F+E + + LP
Sbjct: 176 RTRAIKMLVLDEADEMLNKG-FKEQIYDVYRYLP------------------------PA 210
Query: 256 RQTLVFSATI 265
Q ++ SAT+
Sbjct: 211 TQVVLISATL 220
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 2e-57
Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 54/236 (22%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
EF+ + L L+ I+ +G+++P+PIQ+ IP A G+DI+ A+ G+GK+ A+
Sbjct: 3 NEFE---DYCLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYL 58
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
+P+++RL +++ +++A++I PTRELALQV+ +V+K +
Sbjct: 59 IPLLERLDLKKD--------------------NIQAMVIVPTRELALQVSQICIQVSKHM 98
Query: 151 -NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209
+V+ GG + L +V+ TPGR+ +L+ +K + ++ + VLDEA
Sbjct: 99 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI---KKGVAKVDHVQMIVLDEA 155
Query: 210 DRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
D+++ F + ++ II LP K RQ L++SAT
Sbjct: 156 DKLLSQD-FVQIMEDIILTLP------------------------KNRQILLYSAT 186
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 3e-57
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 41/229 (17%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ L +++ ++ + G+K PTPIQK IP G+D++ A+TGSGKT AF LPI+
Sbjct: 58 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVI-SSGRDLMACAQTGSGKTAAFLLPILS 116
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+LLE+ + G + +I++PTRELA+Q+ + ++ A +++
Sbjct: 117 KLLEDPHEL---------------ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 161
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG S Q + +V+ TPGRL + + ++ + F VLDEADRM++
Sbjct: 162 IVYGGTSFRHQNECITRGCHVVIATPGRLLDFV---DRTFITFEDTRFVVLDEADRMLDM 218
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
G +++ I+ + M R + QTL+FSAT
Sbjct: 219 GFSEDMRRIMTHVTM----------------------RPEHQTLMFSAT 245
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 3e-56
Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 51/254 (20%)
Query: 13 SNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG 72
S + + V E+ + D ++++ L L++ IY GF++P+ IQ+ I +G
Sbjct: 9 SGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI-KG 67
Query: 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132
D+I A++G+GKT F + I+Q+L E ++ +AL++ PT
Sbjct: 68 YDVIAQAQSGTGKTATFAISILQQLEIEFKE--------------------TQALVLAPT 107
Query: 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGG 191
RELA Q+ + + + +GG + + + L+A P +VVGTPGR+++++
Sbjct: 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDML--- 164
Query: 192 EKHLVELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
+ + + FVLDEAD M+ G F++ + I L
Sbjct: 165 NRRYLSPKWIKMFVLDEADEMLSRG-FKDQIYEIFQKLN--------------------- 202
Query: 251 LQRKKRQTLVFSAT 264
Q ++ SAT
Sbjct: 203 ---TSIQVVLLSAT 213
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 4e-56
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 44/230 (19%)
Query: 36 WNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+ + + +P L+KSI R+G +PTPIQ P QG D+I A+TG+GKTL++ +P
Sbjct: 21 FKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGF 79
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
L + + L++TPTRELAL V + + ++
Sbjct: 80 IHLDSQPISR--------------EQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKS 124
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ I GG + Q + ++++ TPGRL +L + V L ++++ V+DEAD+M++
Sbjct: 125 ICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQ---MNNSVNLRSITYLVIDEADKMLD 181
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
+++ I+ + R RQT++ SAT
Sbjct: 182 MEFEPQIRKILLDV------------------------RPDRQTVMTSAT 207
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 4e-56
Identities = 78/255 (30%), Positives = 115/255 (45%), Gaps = 51/255 (20%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ E +M I R F EPT IQ P A G D++G A+TGSGKTL++ LP +
Sbjct: 31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIV 89
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
+ + E+G+ P L++ PTRELA QV E + ++
Sbjct: 90 HINHQPFL------ERGD-----GP----ICLVLAPTRELAQQVQQVAAEYCRACRLKST 134
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
I GG Q R L+ E+ + TPGRL + + E L ++ VLDEADRM++
Sbjct: 135 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFL---ECGKTNLRRTTYLVLDEADRMLDM 191
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI-----ALSAD 270
G +++ I+D + R RQTL++SAT L+ D
Sbjct: 192 GFEPQIRKIVDQI------------------------RPDRQTLMWSATWPKEVRQLAED 227
Query: 271 FRKK---LKHGSLKL 282
F K + G+L+L
Sbjct: 228 FLKDYIHINIGALEL 242
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 4e-56
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 26/229 (11%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI+
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPII-KEKRDLMACAQTGSGKTAAFLLPILS 75
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 155
++ + L E K + +L++ PTRELA+Q+ + ++ + VR
Sbjct: 76 QIYSDGPGEA--LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 133
Query: 156 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+ GG +Q R L+ L+V TPGRL ++M E+ + L + VLDEADRM++
Sbjct: 134 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMM---ERGKIGLDFCKYLVLDEADRMLDM 190
Query: 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
G +++ I++ M + R T++FSAT
Sbjct: 191 GFEPQIRRIVEQDTMP--------------------PKGVRHTMMFSAT 219
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 8e-56
Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 56/256 (21%)
Query: 13 SNGPDDAEEELV--SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH 70
S G D EE + + ++ +FD ++ L L++ ++ GF+EP+ IQ+ I
Sbjct: 1 SEGITDIEESQIQTNYDKVVYKFD---DMELDENLLRGVFGYGFEEPSAIQQRAIMPII- 56
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
+G D++ A++G+GKT F + +QR+ +AL++
Sbjct: 57 EGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------------------VKAPQALMLA 96
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTRELALQ+ + +A ++++V +GG S + L+ ++VVGTPGR+++ +
Sbjct: 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNI-- 153
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVS 249
++ + F+LDEAD M+ +G F+E + I +LP
Sbjct: 154 -QRRRFRTDKIKMFILDEADEMLSSG-FKEQIYQIFTLLP-------------------- 191
Query: 250 SLQRKKRQTLVFSATI 265
Q ++ SAT+
Sbjct: 192 ----PTTQVVLLSATM 203
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 1e-55
Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 54/238 (22%)
Query: 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89
S+ F + L P L+++I GF+ P+ +Q CIP A G D++ A++G GKT F
Sbjct: 13 SSGFR---DFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVF 68
Query: 90 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149
L +Q+L G + L++ TRELA Q++ + +K
Sbjct: 69 VLATLQQLEPV--------------------TGQVSVLVMCHTRELAFQISKEYERFSKY 108
Query: 150 I-NVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 207
+ NV+V GG+S +K E +LK P +VVGTPGR+ L + L + F+LD
Sbjct: 109 MPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA---RNKSLNLKHIKHFILD 165
Query: 208 EADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
E D+M+E R +Q I M P ++Q ++FSAT
Sbjct: 166 ECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSAT 199
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 2e-55
Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 51/245 (20%)
Query: 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAE 80
EE + ++++ L L++ ++ GF+EP+ IQ+ I +G D++ A+
Sbjct: 1 EESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQ 59
Query: 81 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 140
+G+GKT F + +QR+ + +AL++ PTRELALQ+
Sbjct: 60 SGTGKTGTFSIAALQRIDTSVKA--------------------PQALMLAPTRELALQIQ 99
Query: 141 DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200
+ +A ++++V +GG S + L+ ++VVGTPGR+++ + ++
Sbjct: 100 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNI---QRRRFRTDK 155
Query: 201 LSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTL 259
+ F+LDEAD M+ +G F+E + I +LP Q +
Sbjct: 156 IKMFILDEADEMLSSG-FKEQIYQIFTLLP------------------------PTTQVV 190
Query: 260 VFSAT 264
+ SAT
Sbjct: 191 LLSAT 195
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 4e-54
Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 54/243 (22%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
S +S+ F + L P L+++I GF+ P+ +Q CIP A G D++ A++G G
Sbjct: 2 SPGHMSSGFR---DFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMG 57
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KT F L +Q+L G + L++ TRELA Q++ +
Sbjct: 58 KTAVFVLATLQQLEPV--------------------TGQVSVLVMCHTRELAFQISKEYE 97
Query: 145 EVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLS 202
+K + NV+V GG+S +K E +LK P +VVGTPGR+ L + L +
Sbjct: 98 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA---RNKSLNLKHIK 154
Query: 203 FFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 261
F+LDE D+M+E R +Q I M P ++Q ++F
Sbjct: 155 HFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMF 190
Query: 262 SAT 264
SAT
Sbjct: 191 SAT 193
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 4e-49
Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 55/258 (21%)
Query: 13 SNGPDDAEEELVSEAEISTEFDA---WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA- 68
SN D+ + V + + ++ + + ELRL P L++ +Y +GF P+ IQ+ +P
Sbjct: 1 SNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML 60
Query: 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128
A +++I +++G+GKT AF L ++ ++ E P+ L
Sbjct: 61 AEPPQNLIAQSQSGTGKTAAFVLAMLSQV----------------EPANKYPQ----CLC 100
Query: 129 ITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187
++PT ELALQ ++++ K +++ V G E+ K ++V+GTPG + +
Sbjct: 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 157
Query: 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCV 246
S K + + + FVLDEAD MI ++ I MLP
Sbjct: 158 CS-KLKFI-DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP----------------- 198
Query: 247 TVSSLQRKKRQTLVFSAT 264
+ Q L+FSAT
Sbjct: 199 -------RNCQMLLFSAT 209
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 4e-48
Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 53/231 (22%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAFGLPIM 94
++EL L P L+K IY + F++P+ IQ+ +P + +++I +++G+GKT AF L ++
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
R+ E +P+ A+ + P+RELA Q + ++E+ K +
Sbjct: 67 TRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKITS 106
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
IV E+ + +++VGTPG + +LM + L++L + FVLDEAD M++
Sbjct: 107 QLIVPD----SFEKNKQINAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLD 159
Query: 215 NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
+ + LP K Q ++FSAT
Sbjct: 160 QQGLGDQCIRVKRFLP------------------------KDTQLVLFSAT 186
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 6e-48
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 55/256 (21%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AH 70
+N + + + S F+ ELRL P L++ +Y +GF P+ IQ+ +P A
Sbjct: 73 NTNQVEVLQRDPNSPLYSVKSFE---ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE 129
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
+++I +++G+GKT AF L ++ ++ E P+ L ++
Sbjct: 130 PPQNLIAQSQSGTGKTAAFVLAMLSQV----------------EPANKYPQ----CLCLS 169
Query: 131 PTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
PT ELALQ ++++ K +++ V G E+ K ++V+GTPG + + S
Sbjct: 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTV 248
+ ++ + FVLDEAD MI ++ I MLP
Sbjct: 227 --KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------- 265
Query: 249 SSLQRKKRQTLVFSAT 264
+ Q L+FSAT
Sbjct: 266 -----RNCQMLLFSAT 276
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 4e-47
Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 55/256 (21%)
Query: 12 VSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AH 70
+N + + + S F+ ELRL P L++ +Y +GF P+ IQ+ +P A
Sbjct: 73 NTNQVEVLQRDPNSPLYSVKSFE---ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE 129
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
+++I +++G+GKT AF L ++ ++ E P+ L ++
Sbjct: 130 PPQNLIAQSQSGTGKTAAFVLAMLSQV----------------EPANKYPQ----CLCLS 169
Query: 131 PTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189
PT ELALQ ++++ K +++ V G E+ K ++V+GTPG + + S
Sbjct: 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226
Query: 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTV 248
K + + + FVLDEAD MI ++ I MLP
Sbjct: 227 -KLKFI-DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------- 265
Query: 249 SSLQRKKRQTLVFSAT 264
+ Q L+FSAT
Sbjct: 266 -----RNCQMLLFSAT 276
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 8e-46
Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 58/232 (25%)
Query: 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
+ + K+ T Q+ QGK A TG GKT + +
Sbjct: 2 EFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWL 60
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+ + ++ ++ PT L Q + L+++A V++
Sbjct: 61 ARKGK-----------------------KSALVFPTVTLVKQTLERLQKLADE-KVKIFG 96
Query: 157 IVGGMSTEKQERLLKARPE----LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
M E++E+ K+ E ++V + + + + + F +D+ D +
Sbjct: 97 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSK-----NREKLSQKRFDFVFVDDVDAV 151
Query: 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
++ + ++ +P ++ FS
Sbjct: 152 LKASRNIDTLLMMVGIP------------------------EEIIRKAFSTI 179
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 6e-13
Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 28/170 (16%)
Query: 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115
+P Q+ + + + TG GKTL + RL +
Sbjct: 9 QPRIYQEVIYAKC--KETNCLIVLPTGLGKTLIAMMIAEYRL--TKYGG----------- 53
Query: 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE 175
+ L++ PT+ L LQ + + + ++V + G S E++ + +
Sbjct: 54 ---------KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA-K 103
Query: 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 225
++V TP + + G + L +S V DEA R + N + +
Sbjct: 104 VIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-11
Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 29/172 (16%)
Query: 37 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
+ELR+ + ++ G + P Q + + +GK+ + + T SGKTL + ++ R
Sbjct: 4 DELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR 63
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
+L + K A+ I P + LA + ++ K I +RV
Sbjct: 64 ILTQGGK----------------------AVYIVPLKALAEEKFQEFQDWEK-IGLRVAM 100
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
G ++ + + ++++ T + ++ + ++ + V DE
Sbjct: 101 ATGDYDSKDEWL---GKYDIIIATAEK-FDSLLRHGSSWIKD--VKILVADE 146
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 7e-11
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 29/171 (16%)
Query: 38 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 97
+L+L +++ I + G K+ P Q + +G ++ + TGSGKTL + I+ L
Sbjct: 12 DLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL 71
Query: 98 LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 157
L+ K A+ +TP R L + K+ I +V
Sbjct: 72 LKNGGK----------------------AIYVTPLRALTNEKYLTFKDWEL-IGFKVAMT 108
Query: 158 VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
G T+ ++++ T + + + + +++FVLDE
Sbjct: 109 SGDYDTDDAWL---KNYDIIITTYEK-LDSLWRHRPEWLNE--VNYFVLDE 153
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 4e-08
Identities = 58/375 (15%), Positives = 112/375 (29%), Gaps = 134/375 (35%)
Query: 13 SNGPDDAEEELVSEAEI----STEFDAWNELRLHPL--LMKSIYRLGFKEPTPIQKACIP 66
P + + + + F +N RL P L +++ L P + I
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-----RPAKNVLI- 155
Query: 67 AAAHQGKDIIGAAETGSGKT-LA--------------FG---------------LPIMQR 96
G GSGKT +A F L ++Q+
Sbjct: 156 ---D------GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 97 L-------LEEREKAGKMLEEKGEEAEKY-----APKGHLRALII--------------- 129
L R ++ + + K + L++
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 130 ------TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---------KARP 174
T TR QVTD L A ++ + ++ ++ + LL
Sbjct: 265 SCKILLT-TRF--KQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 175 ELVVGTP---GRLWELMSGGE------KHLV--ELHTL---SFFVLDEADRMIENGHFRE 220
E++ P + E + G KH+ +L T+ S VL+ A+ F
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE---YRKMFDR 377
Query: 221 LQSI--------IDMLPM--TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 270
L S+ +L + + S ++++ +++ + +I L +
Sbjct: 378 L-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--E 434
Query: 271 FRKKLK-----HGSL 280
+ KL+ H S+
Sbjct: 435 LKVKLENEYALHRSI 449
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 5e-08
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 20/151 (13%)
Query: 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127
A +GK+II TGSGKT + I + L++++KA G + +
Sbjct: 44 PALEGKNIIICLPTGSGKTRV-AVYIAKDHLDKKKKAS--------------EPG--KVI 86
Query: 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187
++ L Q+ + RV+ + G + + ++++ T L
Sbjct: 87 VLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENS 146
Query: 188 MSGGEKHLVELHTLSFF---VLDEADRMIEN 215
+ E LS F ++DE +
Sbjct: 147 LLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-07
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 20/149 (13%)
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126
A +GK+ I A TG GKT L L +K+ +
Sbjct: 14 LPAKKGKNTIICAPTGCGKTFVSLLICEHHL------------------KKFPCGQKGKV 55
Query: 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186
+ + Q + + + I G S + + ++++ TP L
Sbjct: 56 VFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVN 115
Query: 187 LMSGGEKHLVELHTLSFFVLDEADRMIEN 215
++ G + L + + DE +N
Sbjct: 116 NLNNG--AIPSLSVFTLMIFDECHNTSKN 142
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 5e-07
Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 21/160 (13%)
Query: 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 115
+P Q A +GK+ I A TG GKT L L
Sbjct: 13 KPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHL------------------ 53
Query: 116 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE 175
+K+ + + + Q + + RV I G + + +
Sbjct: 54 KKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND 113
Query: 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215
+++ TP L + G + L + + DE +
Sbjct: 114 IIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQ 151
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 31/168 (18%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
+ + + G +E P Q + GK+++ A T +GKTL + +++ ++
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKV-FSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
++L + P R LA + + K+ K I +R+ G
Sbjct: 69 G-----------------------KSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGD 104
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208
+ + +++V T + + + ++ +S V+DE
Sbjct: 105 YESRDEHL---GDCDIIVTTSEK-ADSLIRNRASWIKA--VSCLVVDE 146
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-05
Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 26/198 (13%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
EE + +S + E P + K+ Q A GK+ +
Sbjct: 215 TYSEEAEPDDNLSENLGSAAEGIGKPPPVYET-----KKARSYQIELAQPAI-NGKNALI 268
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
A TGSGKT L + + + + +
Sbjct: 269 CAPTGSGKTFVSILICEHHF------------------QNMPAGRKAKVVFLATKVPVYE 310
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
Q + K + V I G + + +++V TP L + L
Sbjct: 311 QQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFE--DGTLTS 368
Query: 198 LHTLSFFVLDEADRMIEN 215
L + + DE N
Sbjct: 369 LSIFTLMIFDECHNTTGN 386
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 6e-05
Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 20/149 (13%)
Query: 67 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 126
A GK+ + A TGSGKT L + +
Sbjct: 17 QPAINGKNALICAPTGSGKTFVSILICE------------------HHFQNMPAGRKAKV 58
Query: 127 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 186
+ + + Q + K + V I G + + +++V TP L
Sbjct: 59 VFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVN 118
Query: 187 LMSGGEKHLVELHTLSFFVLDEADRMIEN 215
G L L + + DE N
Sbjct: 119 SFEDG--TLTSLSIFTLMIFDECHNTTGN 145
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 2e-04
Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 26/198 (13%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
EE + +S + E P + K+ Q A GK+ +
Sbjct: 215 TYSEEAEPDDNLSENLGSAAEGIGKPPPVYET-----KKARSYQIELAQPAI-NGKNALI 268
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
A TGSGKT L + + + + +
Sbjct: 269 CAPTGSGKTFVSILICEHHF------------------QNMPAGRKAKVVFLATKVPVYE 310
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
Q + K + V I G + + +++V TP L + L
Sbjct: 311 QQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFE--DGTLTS 368
Query: 198 LHTLSFFVLDEADRMIEN 215
L + + DE N
Sbjct: 369 LSIFTLMIFDECHNTTGN 386
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 24/174 (13%), Positives = 45/174 (25%), Gaps = 49/174 (28%)
Query: 54 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113
+ P + PA + A TGSGK+ +P +G
Sbjct: 214 MRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKST--KVP-------------AAYAAQG- 257
Query: 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR 173
+ L++ P+ L ++K + G +
Sbjct: 258 ----------YKVLVLNPSVAATLGFG---AYMSKAHGIDPNIRTGVRTITTGAP----- 299
Query: 174 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 227
+ T G+ L G + DE H + +I+ +
Sbjct: 300 --VTYSTYGKF--LADG----GCSGGAYDIIICDEC-------HSTDSTTILGI 338
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 51/194 (26%)
Query: 79 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 138
A TG GKT +FGL M L + K R +I PT L +Q
Sbjct: 78 APTGVGKT-SFGL-AMSLFLALKGK---------------------RCYVIFPTSLLVIQ 114
Query: 139 VTDHLKEVAK----GINVRVVPIVGGMSTEKQERLLKARPE--LVVGTPGRLWELMSGGE 192
+ +++ A+ G + G + ++E ++ +V+ T L
Sbjct: 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLS------- 167
Query: 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 252
KH EL F +D+ D +++ + + ++ +L G + S
Sbjct: 168 KHYRELGHFDFIFVDDVDAILKAS--KNVDKLLHLL--------GFHYD----LKTKSWV 213
Query: 253 RKKRQTLVF-SATI 265
+ R L+ +AT
Sbjct: 214 GEARGCLMVSTATA 227
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 100.0 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.97 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.97 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.97 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.97 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.97 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.97 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.97 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.97 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.96 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.96 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.96 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.95 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.95 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.95 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.94 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.94 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.94 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.94 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.93 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.93 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.93 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.92 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.92 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.92 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.92 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.91 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.91 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.9 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.89 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.89 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.89 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.88 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.88 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.87 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.86 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.85 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.83 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.83 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.82 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.82 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.81 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.8 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.78 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.73 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.73 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.73 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.72 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.72 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.72 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.69 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.68 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.6 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.58 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.49 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.47 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.44 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.41 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.19 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.96 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 98.31 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.28 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 98.25 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 98.25 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 98.13 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 98.07 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 97.3 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 97.09 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.06 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.99 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 96.7 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.7 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 96.52 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 96.37 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 96.24 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 96.06 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.03 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.0 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.95 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.87 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.79 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.58 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.57 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.54 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.48 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.44 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.19 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 95.17 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 95.16 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.04 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 95.01 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.94 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 94.84 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 94.83 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 94.78 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.7 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.67 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 94.66 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 94.43 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 94.34 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 93.93 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 93.92 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 93.82 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 93.81 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 93.8 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 93.64 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 93.63 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 93.59 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 93.2 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 93.1 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 92.98 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 92.86 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 92.78 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 92.69 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 92.63 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 92.27 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 92.23 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 92.19 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.97 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 91.91 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 91.57 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 91.57 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 91.51 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 91.47 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 91.45 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 91.39 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 91.12 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 91.1 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 90.99 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 90.78 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 90.69 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 90.39 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 90.29 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 90.18 | |
| 3hjh_A | 483 | Transcription-repair-coupling factor; MFD, mutatio | 90.13 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 90.12 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 90.06 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 89.75 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 89.73 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 88.9 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 88.81 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 88.74 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 88.66 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 88.57 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 88.41 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 88.37 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 88.09 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 87.8 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 87.71 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 87.43 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 87.18 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 87.14 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 87.01 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 86.57 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 86.47 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 86.31 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 86.25 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 85.89 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 85.65 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 85.31 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 84.87 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 84.78 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 84.51 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 84.46 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 84.3 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 84.1 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 84.06 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 84.02 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 83.9 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 83.89 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 83.84 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 83.58 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 83.06 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 82.81 | |
| 1w36_B | 1180 | RECB, exodeoxyribonuclease V beta chain; recombina | 82.64 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 82.57 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 82.31 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 82.17 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 82.12 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 81.76 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 81.45 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 81.35 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 81.28 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 81.28 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 80.62 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 80.6 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 80.55 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 80.39 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 80.37 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 80.02 |
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=284.20 Aligned_cols=201 Identities=34% Similarity=0.497 Sum_probs=180.1
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+.+.+.|+++.+|+++++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+....
T Consensus 19 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~-- 95 (242)
T 3fe2_A 19 VRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQP-- 95 (242)
T ss_dssp EESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSC--
T ss_pred EeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhcc--
Confidence 3455678899999999999999999999999999999999999985 8999999999999999999999999874321
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
......++++||++||++|+.|+++.++.+....++++..++|+.........+..+++|+|+||++
T Consensus 96 -------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 96 -------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp -------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred -------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 1122346789999999999999999999999988999999999999988888888899999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
+.+++..+. ..+.+++++|+||||++++++|...+..++..++ ..+|+++|||
T Consensus 163 l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~------------------------~~~q~~~~SA 215 (242)
T 3fe2_A 163 LIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR------------------------PDRQTLMWSA 215 (242)
T ss_dssp HHHHHHHTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC------------------------SSCEEEEEES
T ss_pred HHHHHHcCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC------------------------ccceEEEEEe
Confidence 999997653 5688999999999999999999999999999987 6799999999
Q ss_pred eccC
Q 020452 264 TIAL 267 (326)
Q Consensus 264 Tl~~ 267 (326)
|++.
T Consensus 216 T~~~ 219 (242)
T 3fe2_A 216 TWPK 219 (242)
T ss_dssp CCCH
T ss_pred ecCH
Confidence 9983
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=270.16 Aligned_cols=200 Identities=31% Similarity=0.457 Sum_probs=168.0
Q ss_pred ccccccccccccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 26 EAEISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 26 ~~~~~~~~~~f~~-l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
....|++..+|++ +++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~- 88 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS- 88 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccch-
Confidence 4467889999999 8999999999999999999999999999985 899999999999999999999999887543211
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
.....++++||++||++|+.|+++.++.+. ..++++..++|+.........+..+++|+|+||+++
T Consensus 89 -------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l 154 (228)
T 3iuy_A 89 -------------REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL 154 (228)
T ss_dssp -----------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHH
T ss_pred -------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHH
Confidence 112346789999999999999999999986 457889999999888777777888999999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++.... ..+.+++++|+||||++.+++|...+..++..++ ..+|++++|||
T Consensus 155 ~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT 207 (228)
T 3iuy_A 155 NDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR------------------------PDRQTVMTSAT 207 (228)
T ss_dssp HHHHHTTC---CCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC------------------------SSCEEEEEESC
T ss_pred HHHHHcCC---cCcccceEEEEECHHHHhccchHHHHHHHHHhCC------------------------cCCeEEEEEee
Confidence 99887653 5688999999999999999999999999999987 67999999999
Q ss_pred ccCc
Q 020452 265 IALS 268 (326)
Q Consensus 265 l~~~ 268 (326)
++..
T Consensus 208 ~~~~ 211 (228)
T 3iuy_A 208 WPDT 211 (228)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9843
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=271.41 Aligned_cols=195 Identities=39% Similarity=0.657 Sum_probs=174.3
Q ss_pred cccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 020452 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105 (326)
Q Consensus 26 ~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~ 105 (326)
+...+++..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+...
T Consensus 35 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~----- 108 (249)
T 3ber_A 35 PIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLET----- 108 (249)
T ss_dssp CCHHHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----
T ss_pred CcCcccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----
Confidence 33445678899999999999999999999999999999999985 899999999999999999999999887542
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHH
Q 020452 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~ 185 (326)
..++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||+++.
T Consensus 109 ---------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 109 ---------------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLI 173 (249)
T ss_dssp ---------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHH
T ss_pred ---------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 23568999999999999999999999988899999999999988887778889999999999999
Q ss_pred HHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 186 ~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
+++.+.. ...+.+++++|+||||++.+++|...+..++..++ ..+|+++||||+
T Consensus 174 ~~l~~~~--~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~ 227 (249)
T 3ber_A 174 DHLENTK--GFNLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------RDRKTFLFSATM 227 (249)
T ss_dssp HHHHHST--TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC------------------------SSSEEEEEESSC
T ss_pred HHHHcCC--CcCccccCEEEEcChhhhhccChHHHHHHHHHhCC------------------------CCCeEEEEeccC
Confidence 9887531 24578899999999999999999999999999887 678999999999
Q ss_pred cC
Q 020452 266 AL 267 (326)
Q Consensus 266 ~~ 267 (326)
+.
T Consensus 228 ~~ 229 (249)
T 3ber_A 228 TK 229 (249)
T ss_dssp CH
T ss_pred CH
Confidence 83
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=270.62 Aligned_cols=199 Identities=31% Similarity=0.546 Sum_probs=160.0
Q ss_pred hhccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHH
Q 020452 21 EELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100 (326)
Q Consensus 21 ~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~ 100 (326)
++.+.+.+++++..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+...
T Consensus 17 ~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~~ 95 (237)
T 3bor_A 17 QGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEIE 95 (237)
T ss_dssp ----------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc
Confidence 3445566778889999999999999999999999999999999999985 889999999999999999999999876321
Q ss_pred HHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcC-CCEEEe
Q 020452 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVG 179 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-~~IlV~ 179 (326)
..+.++||++||++|+.|+++.++.++...++.+..++|+.........+..+ ++|+|+
T Consensus 96 --------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~ 155 (237)
T 3bor_A 96 --------------------FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 155 (237)
T ss_dssp --------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEE
T ss_pred --------------------CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEE
Confidence 23568999999999999999999999888888999999988776665555544 899999
Q ss_pred CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEE
Q 020452 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTL 259 (326)
Q Consensus 180 Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 259 (326)
||+++.+++..+. ..+.++++||+||||++.+++|...+..++..++ ..+|++
T Consensus 156 Tp~~l~~~l~~~~---~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i 208 (237)
T 3bor_A 156 TPGRVFDMLNRRY---LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------------------TSIQVV 208 (237)
T ss_dssp CHHHHHHHHHTTS---SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEE
T ss_pred CHHHHHHHHHhCC---cCcccCcEEEECCchHhhccCcHHHHHHHHHhCC------------------------CCCeEE
Confidence 9999999997653 5678899999999999999999999999999987 679999
Q ss_pred EEeeeccC
Q 020452 260 VFSATIAL 267 (326)
Q Consensus 260 ~~SATl~~ 267 (326)
++|||++.
T Consensus 209 ~~SAT~~~ 216 (237)
T 3bor_A 209 LLSATMPT 216 (237)
T ss_dssp EECSSCCH
T ss_pred EEEEecCH
Confidence 99999983
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=274.59 Aligned_cols=200 Identities=36% Similarity=0.594 Sum_probs=171.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
++.+|+++++++.++++|..+||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~-------- 91 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN-------- 91 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccc--------
Confidence 78899999999999999999999999999999999985 899999999999999999999999987543110
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
........++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||+++.+++..+
T Consensus 92 ---~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 92 ---QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp --------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ---cccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 00111234579999999999999999999999988889999999999888777777788999999999999999765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
. ..+.+++++|+||||++++++|...+..++..+.... ...+|++++|||++
T Consensus 169 ~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 169 K---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS--------------------GINRQTLMFSATFP 220 (253)
T ss_dssp S---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC--------------------GGGCEEEEEESSCC
T ss_pred C---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC--------------------CCCcEEEEEEEeCC
Confidence 3 5678999999999999999999999999998654210 02689999999997
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=292.03 Aligned_cols=204 Identities=33% Similarity=0.585 Sum_probs=181.0
Q ss_pred cCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHh
Q 020452 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 103 (326)
Q Consensus 24 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~ 103 (326)
+++.+.|.++.+|++++|++.++++++++||..|+|+|.++||.++ +|+|++++||||||||++|++|++..+....
T Consensus 46 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~-- 122 (434)
T 2db3_A 46 VTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDP-- 122 (434)
T ss_dssp EESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC--
T ss_pred ecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcc--
Confidence 3456678899999999999999999999999999999999999985 8999999999999999999999999886532
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHH
Q 020452 104 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 183 (326)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~ 183 (326)
......++++||++||++|+.|+++.+++++...++++..++|+.....+...+..+++|+|+||++
T Consensus 123 -------------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~ 189 (434)
T 2db3_A 123 -------------HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGR 189 (434)
T ss_dssp -------------CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHH
T ss_pred -------------cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHH
Confidence 1122346799999999999999999999999888899999999999988888888899999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
|.+++.++. ..+.+++++|+||||+|++++|...+..++..+... ..+|+++|||
T Consensus 190 l~~~l~~~~---~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------~~~q~l~~SA 244 (434)
T 2db3_A 190 LLDFVDRTF---ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------PEHQTLMFSA 244 (434)
T ss_dssp HHHHHHTTS---CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC----------------------SSCEEEEEES
T ss_pred HHHHHHhCC---cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC----------------------CCceEEEEec
Confidence 999997653 668899999999999999999999999999876421 5689999999
Q ss_pred eccCc
Q 020452 264 TIALS 268 (326)
Q Consensus 264 Tl~~~ 268 (326)
|++..
T Consensus 245 T~~~~ 249 (434)
T 2db3_A 245 TFPEE 249 (434)
T ss_dssp CCCHH
T ss_pred cCCHH
Confidence 99843
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=264.32 Aligned_cols=197 Identities=29% Similarity=0.540 Sum_probs=165.3
Q ss_pred ccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 23 LVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 23 ~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
...+..+++.+.+|+++++++.+++.++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+...
T Consensus 3 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-- 79 (224)
T 1qde_A 3 SQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-- 79 (224)
T ss_dssp --CCBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT--
T ss_pred cccccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHhcc--
Confidence 34455677888999999999999999999999999999999999985 889999999999999999999999876321
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcH
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG 182 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~ 182 (326)
..++++||++|+++|+.|+++.++.+....++++..++|+.........+. .++|+|+||+
T Consensus 80 ------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~ 140 (224)
T 1qde_A 80 ------------------VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPG 140 (224)
T ss_dssp ------------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHH
T ss_pred ------------------CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHH
Confidence 335689999999999999999999998888899999999887665554444 4899999999
Q ss_pred HHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 183 ~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
++.+.+.+.. ..+.+++++|+||||++.++++...+..++..++ ...|++++|
T Consensus 141 ~l~~~~~~~~---~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~lS 193 (224)
T 1qde_A 141 RVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLS 193 (224)
T ss_dssp HHHHHHHTTS---SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEEE
T ss_pred HHHHHHHhCC---cchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC------------------------ccCeEEEEE
Confidence 9999987653 5678899999999999999999999999999987 678999999
Q ss_pred eeccCc
Q 020452 263 ATIALS 268 (326)
Q Consensus 263 ATl~~~ 268 (326)
||+++.
T Consensus 194 AT~~~~ 199 (224)
T 1qde_A 194 ATMPND 199 (224)
T ss_dssp SSCCHH
T ss_pred eecCHH
Confidence 999843
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=279.35 Aligned_cols=188 Identities=33% Similarity=0.552 Sum_probs=161.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
....+|++++|++.++++|.++||..|+++|.++||.++ .| +|++++||||||||++|++|+++.+..
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~--------- 158 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--------- 158 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SSSCCCEEEECCTTSSHHHHHHHHHHHHCCT---------
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCCccHHHHHHHHHhhhc---------
Confidence 356789999999999999999999999999999999996 55 999999999999999999999987632
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
...++++||++||++||.|+++.++.+.... ++.+..++|+...... ...+++|+||||++|+++
T Consensus 159 -----------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~ 224 (300)
T 3fmo_B 159 -----------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (300)
T ss_dssp -----------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred -----------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHH
Confidence 1346789999999999999999999998764 6788888887764332 145789999999999999
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+.+. ....++++++||+||||+|++ .+|...+..++..++ ..+|+++||||++
T Consensus 225 l~~~--~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~------------------------~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 225 CSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFE 278 (300)
T ss_dssp HTTT--CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC------------------------TTCEEEEEESCCC
T ss_pred HHhc--CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC------------------------CCCEEEEEeccCC
Confidence 9653 235678999999999999998 688889999998887 6799999999998
Q ss_pred Cc
Q 020452 267 LS 268 (326)
Q Consensus 267 ~~ 268 (326)
+.
T Consensus 279 ~~ 280 (300)
T 3fmo_B 279 DS 280 (300)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=265.02 Aligned_cols=192 Identities=28% Similarity=0.490 Sum_probs=163.7
Q ss_pred cccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 020452 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105 (326)
Q Consensus 26 ~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~ 105 (326)
....|.+..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+...
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 44556778899999999999999999999999999999999985 899999999999999999999999876321
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
..++++||++||++|+.|+++.++.+.... ++++..++|+.........+ .+++|+|+||+++
T Consensus 90 ---------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l 153 (230)
T 2oxc_A 90 ---------------NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRI 153 (230)
T ss_dssp ---------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHH
T ss_pred ---------------CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHH
Confidence 235689999999999999999999998765 78999999998876665554 4789999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCC-CHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~-~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
.+++..+. ..+.+++++|+||||++++++ |...+..++..++ ..+|++++||
T Consensus 154 ~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~lSA 206 (230)
T 2oxc_A 154 KQLIELDY---LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------------------ASKQMLAVSA 206 (230)
T ss_dssp HHHHHTTS---SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC------------------------SSCEEEEEES
T ss_pred HHHHhcCC---cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC------------------------CCCeEEEEEe
Confidence 99987653 557789999999999999887 9999999999988 6789999999
Q ss_pred ecc
Q 020452 264 TIA 266 (326)
Q Consensus 264 Tl~ 266 (326)
|++
T Consensus 207 T~~ 209 (230)
T 2oxc_A 207 TYP 209 (230)
T ss_dssp CCC
T ss_pred ccC
Confidence 997
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=259.97 Aligned_cols=185 Identities=35% Similarity=0.636 Sum_probs=166.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|+++++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhcc--------------
Confidence 479999999999999999999999999999999985 89999999999999999999999987622
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
...++++||++||++|+.|+++.++.+.+.. ++++..++|+.........+..+++|+|+||+++.+.+.++.
T Consensus 68 ------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 68 ------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp ------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC
T ss_pred ------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC
Confidence 1335689999999999999999999998776 788999999999887777777889999999999999987653
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..+.+++++|+||||++.+.++...+..++..++ ...|++++|||++
T Consensus 142 ---~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~ 188 (206)
T 1vec_A 142 ---AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------------------KNRQILLYSATFP 188 (206)
T ss_dssp ---SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC------------------------TTCEEEEEESCCC
T ss_pred ---cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC------------------------ccceEEEEEeeCC
Confidence 5678899999999999999999999999999987 6789999999998
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=265.61 Aligned_cols=187 Identities=35% Similarity=0.612 Sum_probs=164.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
..+|+++++++.++++++++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+...
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------------ 69 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPE------------ 69 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTT------------
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhC------------
Confidence 3579999999999999999999999999999999985 889999999999999999999999876321
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC----CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..++++||++||++|+.|+++.++.+.... ++.+..++|+.........+..+++|+|+||+++.+++
T Consensus 70 --------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 70 --------RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp --------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred --------cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHH
Confidence 235689999999999999999999998876 68888899988765554444557899999999999998
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..+. ..+.+++++|+||||++.++++...+..++..++ ..+|++++|||++.
T Consensus 142 ~~~~---~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 142 REQA---LDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------KDLQMLVFSATIPE 193 (219)
T ss_dssp HTTC---CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC------------------------TTCEEEEEESCCCG
T ss_pred HcCC---CCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 7653 5578899999999999999999999999999887 67899999999974
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=267.67 Aligned_cols=192 Identities=36% Similarity=0.553 Sum_probs=166.8
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 34 DAWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 34 ~~f~~l~--l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
.+|++++ +++.++++++++||..|+++|.++++.++ .|+|+++++|||||||++|++|+++.+...+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---------- 120 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---------- 120 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhcc----------
Confidence 3566776 99999999999999999999999999985 7899999999999999999999999886531
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
.....+.++||++||++|+.|+++.++.++...+..+..++|+.........+..+++|+|+||+++.+++...
T Consensus 121 ------~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~ 194 (262)
T 3ly5_A 121 ------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT 194 (262)
T ss_dssp ------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc
Confidence 11123568999999999999999999999998899999999999988888888888999999999999988654
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
. ...+.+++++|+||||++++++|...+..++..++ ..+|+++||||++..
T Consensus 195 ~--~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 195 P--GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP------------------------TRRQTMLFSATQTRK 245 (262)
T ss_dssp T--TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSC------------------------SSSEEEEECSSCCHH
T ss_pred C--CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCC------------------------CCCeEEEEEecCCHH
Confidence 2 24578899999999999999999999999999998 678999999999844
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=261.03 Aligned_cols=194 Identities=38% Similarity=0.566 Sum_probs=167.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
++++.+|+++++++.++++|+++||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+....
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~-------- 91 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ-------- 91 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTT--------
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc--------
Confidence 4667889999999999999999999999999999999985 8999999999999999999999999876431
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
.....++++||++||++|+.|+++.++.+....++++..++|+.........+ .+++|+|+||+++.+.+.
T Consensus 92 --------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~ 162 (236)
T 2pl3_A 92 --------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMD 162 (236)
T ss_dssp --------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHH
T ss_pred --------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHH
Confidence 11123568999999999999999999999888889999999988766555544 478999999999999886
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
... ...+.+++++|+||||++.+++|...+..++..++ ..+|++++|||++.
T Consensus 163 ~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 163 ETV--SFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------------------KKRQTLLFSATQTK 214 (236)
T ss_dssp HCS--SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSC------------------------TTSEEEEEESSCCH
T ss_pred hcC--CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCC------------------------CCCeEEEEEeeCCH
Confidence 532 24578899999999999999999999999999988 67899999999983
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=253.07 Aligned_cols=186 Identities=42% Similarity=0.675 Sum_probs=164.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|+++++++.++++++++||..|+++|.++++.++ +|+++++++|||+|||++|++|++..+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~-------------- 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPS-------------- 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhc--------------
Confidence 69999999999999999999999999999999985 899999999999999999999999876321
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
.....++++||++|+++|+.|+++.++.+... +++..++|+.........+..+++|+|+||+++.+++..+.
T Consensus 67 ---~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-- 139 (207)
T 2gxq_A 67 ---QERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV-- 139 (207)
T ss_dssp ---CCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS--
T ss_pred ---cccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC--
Confidence 11234678999999999999999999998764 67888999988777777777789999999999999987643
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
..+.+++++|+||||++.+.++...+..++..++ ...|++++|||+++
T Consensus 140 -~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 140 -LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------------------------PSRQTLLFSATLPS 187 (207)
T ss_dssp -SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC------------------------TTSEEEEECSSCCH
T ss_pred -cchhhceEEEEEChhHhhccchHHHHHHHHHhCC------------------------ccCeEEEEEEecCH
Confidence 5678899999999999999999999999999887 67899999999984
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=255.90 Aligned_cols=194 Identities=36% Similarity=0.645 Sum_probs=163.5
Q ss_pred ccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 020452 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 106 (326)
Q Consensus 27 ~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~ 106 (326)
...+....+|+++++++.++++|+++||..|+++|.++++.++ +++|+++++|||+|||++|++|++..+..
T Consensus 7 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~~------- 78 (220)
T 1t6n_A 7 SYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEP------- 78 (220)
T ss_dssp -------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCC-------
T ss_pred CcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhhc-------
Confidence 3444566689999999999999999999999999999999985 78999999999999999999999987521
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhc-CCCEEEeCcHHH
Q 020452 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRL 184 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l 184 (326)
..+++++||++||++|+.|+++.++.+.... ++++..++|+.........+.. .++|+|+||+++
T Consensus 79 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l 145 (220)
T 1t6n_A 79 -------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145 (220)
T ss_dssp -------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHH
T ss_pred -------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHH
Confidence 1235689999999999999999999998765 7899999999887776665554 579999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
.+++.... ..+.+++++|+||||++++ .++...+..++..++ ...|++++||
T Consensus 146 ~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SA 198 (220)
T 1t6n_A 146 LALARNKS---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSA 198 (220)
T ss_dssp HHHHHTTS---SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC------------------------SSSEEEEEES
T ss_pred HHHHHhCC---CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC------------------------CcCeEEEEEe
Confidence 99987653 5678999999999999986 477788888888877 6789999999
Q ss_pred eccCc
Q 020452 264 TIALS 268 (326)
Q Consensus 264 Tl~~~ 268 (326)
|+++.
T Consensus 199 T~~~~ 203 (220)
T 1t6n_A 199 TLSKE 203 (220)
T ss_dssp CCCTT
T ss_pred ecCHH
Confidence 99854
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=260.86 Aligned_cols=198 Identities=33% Similarity=0.547 Sum_probs=163.7
Q ss_pred CcccccccccccccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHH
Q 020452 25 SEAEISTEFDAWNEL----RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l----~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~ 100 (326)
.+.+.|.++.+|+++ ++++.+++++.++||..|+++|.++++.++ +|+|+++++|||+|||++|++|++..+..
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~- 93 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQ- 93 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCS-
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhh-
Confidence 345678899999988 899999999999999999999999999985 89999999999999999999999987721
Q ss_pred HHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH-HHHhcCCCEEEe
Q 020452 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE-RLLKARPELVVG 179 (326)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~IlV~ 179 (326)
....++++||++||++|+.|+++.++.++...++++..++|+....... .....+++|+|+
T Consensus 94 ------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 155 (245)
T 3dkp_A 94 ------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155 (245)
T ss_dssp ------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEE
T ss_pred ------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEE
Confidence 1234668999999999999999999999988888887777654322211 112346899999
Q ss_pred CcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh---CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCc
Q 020452 180 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE---NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 256 (326)
Q Consensus 180 Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~---~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (326)
||+++.+++.... ....+.+++++|+||||++++ .+|...+..++..+.. .+.
T Consensus 156 Tp~~l~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~ 211 (245)
T 3dkp_A 156 TPNRLIYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-----------------------HKV 211 (245)
T ss_dssp CHHHHHHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-----------------------TTC
T ss_pred CHHHHHHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-----------------------CCc
Confidence 9999999997642 235688999999999999998 4677888888877642 568
Q ss_pred eEEEEeeecc
Q 020452 257 QTLVFSATIA 266 (326)
Q Consensus 257 q~i~~SATl~ 266 (326)
|+++||||++
T Consensus 212 ~~~~~SAT~~ 221 (245)
T 3dkp_A 212 RRAMFSATFA 221 (245)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeccCC
Confidence 9999999997
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=269.62 Aligned_cols=218 Identities=31% Similarity=0.507 Sum_probs=178.7
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhh
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 104 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~ 104 (326)
.+..+|+++.+|+++++++.++++|+.+||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|+++.+.......
T Consensus 6 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~ 84 (417)
T 2i4i_A 6 TGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE 84 (417)
T ss_dssp ESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc
Confidence 345678889999999999999999999999999999999999985 8999999999999999999999999886542110
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH
Q 020452 105 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL 184 (326)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l 184 (326)
. ...............++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|
T Consensus 85 ~--~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 85 A--LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp H--HHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred h--hhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 0 00000000011123357899999999999999999999998889999999999999888888888899999999999
Q ss_pred HHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 185 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 185 ~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
.+++..+. ..+.++++||+||||++.+++|...+..++....... ....|++++|||
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~i~~SAT 219 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP--------------------KGVRHTMMFSAT 219 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC--------------------BTTBEEEEEESC
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC--------------------cCCcEEEEEEEe
Confidence 99997653 5688899999999999999999999999987543110 136899999999
Q ss_pred ccCc
Q 020452 265 IALS 268 (326)
Q Consensus 265 l~~~ 268 (326)
++..
T Consensus 220 ~~~~ 223 (417)
T 2i4i_A 220 FPKE 223 (417)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9743
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=263.65 Aligned_cols=192 Identities=30% Similarity=0.543 Sum_probs=171.9
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 28 ~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
+.++...+|+++++++.++++++++||..|+|+|.++++.++ +|+|+++++|||+|||++|++|+++.+..
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------- 101 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDI-------- 101 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCT--------
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHhh--------
Confidence 334566789999999999999999999999999999999985 89999999999999999999999987521
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
...+.++||++||++|+.|+++.+..+....++.+..++|+.........+..+++|+|+||+++.++
T Consensus 102 ------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~ 169 (410)
T 2j0s_A 102 ------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169 (410)
T ss_dssp ------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred ------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHH
Confidence 12356899999999999999999999998889999999999998888888888899999999999999
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+..+. ..+.++++||+||||++.++++...+..++..++ ...|++++|||++.
T Consensus 170 l~~~~---~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 170 IRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------------------------PATQVVLISATLPH 222 (410)
T ss_dssp HHTTS---SCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC------------------------TTCEEEEEESCCCH
T ss_pred HHhCC---ccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc------------------------cCceEEEEEcCCCH
Confidence 97653 5678899999999999999999999999998887 67899999999974
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=260.09 Aligned_cols=203 Identities=30% Similarity=0.547 Sum_probs=174.6
Q ss_pred CcchhhccCcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 17 DDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
...+.+......++....+|+++++++.+++.++++||..|+++|.++++.++ +|+++++++|||+|||++|++|+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~ 101 (414)
T 3eiq_A 23 DGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQ 101 (414)
T ss_dssp -------CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHH
T ss_pred cccccccccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHH
Confidence 34455555666778888999999999999999999999999999999999985 89999999999999999999999987
Q ss_pred HHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCC
Q 020452 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPE 175 (326)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~ 175 (326)
+... ..+.++||++|+++|+.|+++.++.++...+..+..++|+.........+. .+++
T Consensus 102 ~~~~--------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (414)
T 3eiq_A 102 IELD--------------------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 161 (414)
T ss_dssp CCTT--------------------SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCS
T ss_pred Hhhc--------------------CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCC
Confidence 6321 235689999999999999999999999888899999999988877766655 6789
Q ss_pred EEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCC
Q 020452 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKK 255 (326)
Q Consensus 176 IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (326)
|+|+||++|.+++..+. ..+.++++||+||||++.++++...+..++..++ ..
T Consensus 162 iiv~T~~~l~~~l~~~~---~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~------------------------~~ 214 (414)
T 3eiq_A 162 IIVGTPGRVFDMLNRRY---LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------------------SN 214 (414)
T ss_dssp EEEECHHHHHHHHHHTS---SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC------------------------TT
T ss_pred EEEECHHHHHHHHHcCC---cccccCcEEEEECHHHhhccCcHHHHHHHHHhCC------------------------CC
Confidence 99999999999997653 5678899999999999999999999999998887 67
Q ss_pred ceEEEEeeeccC
Q 020452 256 RQTLVFSATIAL 267 (326)
Q Consensus 256 ~q~i~~SATl~~ 267 (326)
.|++++|||++.
T Consensus 215 ~~~i~~SAT~~~ 226 (414)
T 3eiq_A 215 TQVVLLSATMPS 226 (414)
T ss_dssp CEEEEECSCCCH
T ss_pred CeEEEEEEecCH
Confidence 999999999973
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=252.52 Aligned_cols=191 Identities=30% Similarity=0.561 Sum_probs=168.9
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 29 ~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
+.++..+|+++++++.+++++.++||..|+|+|.++++.++ +|+++++.+|||+|||++|++|++..+...
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-------- 86 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------- 86 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhcc--------
Confidence 44667789999999999999999999999999999999985 789999999999999999999999876321
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..++++||++|+++|+.|+++.+..+....++++..++|+.........+. +++|+|+||+++.+.+
T Consensus 87 ------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~ 153 (394)
T 1fuu_A 87 ------------VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNI 153 (394)
T ss_dssp ------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHH
T ss_pred ------------CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHH
Confidence 235689999999999999999999999888899999999988776655554 5899999999999988
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.... ..+.+++++|+||||++.++++...+..++..++ ...|++++|||+++.
T Consensus 154 ~~~~---~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 206 (394)
T 1fuu_A 154 QRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPND 206 (394)
T ss_dssp HTTS---SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCCHH
T ss_pred HhCC---cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC------------------------CCceEEEEEEecCHH
Confidence 7653 5578899999999999999999999999999887 678999999999853
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=254.46 Aligned_cols=191 Identities=34% Similarity=0.620 Sum_probs=165.8
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 29 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 29 ~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
.+.+..+|+++++++.++++|.++||..|+|+|.++++.++ +++++++.+|||+|||++|++|++..+...
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-------- 86 (400)
T 1s2m_A 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPK-------- 86 (400)
T ss_dssp -----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------
T ss_pred cccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhhc--------
Confidence 34556789999999999999999999999999999999985 889999999999999999999999876221
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..+.++||++|+++|+.|+++.++.++...++++..++|+.........+..+++|+|+||+++.+++
T Consensus 87 ------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~ 154 (400)
T 1s2m_A 87 ------------LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA 154 (400)
T ss_dssp ------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred ------------cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHH
Confidence 23568999999999999999999999988899999999999887776667778999999999999988
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.... ..+.+++++|+||||++.+.++...+..++..++ ...|++++|||++.
T Consensus 155 ~~~~---~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~ 206 (400)
T 1s2m_A 155 SRKV---ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------------------------PTHQSLLFSATFPL 206 (400)
T ss_dssp HTTC---SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC------------------------SSCEEEEEESCCCH
T ss_pred HhCC---cccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------cCceEEEEEecCCH
Confidence 7653 5678899999999999998888888888888776 67899999999973
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=240.71 Aligned_cols=188 Identities=36% Similarity=0.655 Sum_probs=165.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
...+|+++++++.++++|+++||..|+|+|.++++.++..++++++.+|||+|||++|++|++..+..
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------------ 71 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------------ 71 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------------
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------------
Confidence 34589999999999999999999999999999999997444799999999999999999999876521
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
..+.++||++|+++|+.|+++.+..+....++.+..++|+.........+. +++|+|+||+++.+.+..+
T Consensus 72 ---------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 72 ---------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG 141 (367)
T ss_dssp ---------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT
T ss_pred ---------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC
Confidence 235689999999999999999999999888899999999998877666555 6899999999999988765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
. ..+.+++++|+||||++.++++...+..++..++ ...|++++|||++..
T Consensus 142 ~---~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 142 T---LNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------------------KDKRILLFSATMPRE 191 (367)
T ss_dssp C---SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC------------------------SSCEEEEECSSCCHH
T ss_pred C---cccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------CCceEEEEeeccCHH
Confidence 3 5578899999999999999999999999998877 678999999999844
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=246.34 Aligned_cols=187 Identities=37% Similarity=0.674 Sum_probs=161.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|+++++++.++++|+++||..|+|+|.++++.++ .|+++++.+|||+|||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------- 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhcc--------------
Confidence 479999999999999999999999999999999985 78999999999999999999999987521
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhc-CCCEEEeCcHHHHHHHhcC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~ll~~~ 191 (326)
...+.++||++|+++|+.|+++.++.+.... ++++..++|+.........+.. .++|+|+||+++..++...
T Consensus 73 ------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 73 ------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp ------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred ------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 1235689999999999999999999998765 7899999999988776665554 4799999999999988765
Q ss_pred CcccccCCCeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 192 EKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
. ..+.+++++|+||||++.++ ++...+..++..++ ...|++++|||++..
T Consensus 147 ~---~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 147 S---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKE 197 (391)
T ss_dssp S---SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESSCCST
T ss_pred C---ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC------------------------CCceEEEEEeeCCHH
Confidence 3 56788999999999999874 67778888888776 678999999999865
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=254.87 Aligned_cols=188 Identities=33% Similarity=0.551 Sum_probs=156.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
.+..+|++++|++.++++|+++||..|+|+|.++++.++ .+ ++++++||||||||++|++|++..+...
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il-~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------- 159 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--------
Confidence 346789999999999999999999999999999999996 54 8999999999999999999999876321
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
..++++||++||++|+.|+++.++.+.... ++.+....++...... ....++|+|+||+++.++
T Consensus 160 ------------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 160 ------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp ------------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred ------------CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHH
Confidence 335689999999999999999999988753 5677777776553222 133579999999999999
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+.+. ....+.++++||+||||++++ .++...+..+...++ ..+|++++|||++
T Consensus 225 l~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 225 CSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFE 278 (479)
T ss_dssp HTTS--CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC------------------------TTSEEEEEESCCC
T ss_pred HHhc--CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC------------------------ccceEEEEeCCCC
Confidence 9653 235678999999999999997 577777888887777 6799999999998
Q ss_pred Cc
Q 020452 267 LS 268 (326)
Q Consensus 267 ~~ 268 (326)
+.
T Consensus 279 ~~ 280 (479)
T 3fmp_B 279 DS 280 (479)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=260.92 Aligned_cols=201 Identities=32% Similarity=0.511 Sum_probs=163.4
Q ss_pred ccccccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 33 FDAWNELR----LHPLLMKSIYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 33 ~~~f~~l~----l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
..+|+++. |++.++++++.+||..|+|+|.++|+.++. .++|+++++|||+|||++|++|+++.+....
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~------ 89 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------ 89 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT------
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc------
Confidence 33555554 999999999999999999999999999864 4789999999999999999999999886542
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPG 182 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~----~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~ 182 (326)
.....++++||++||++|+.|+++.++.+... ..+.+..++|+.........+. .+++|+|+||+
T Consensus 90 ----------~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~ 159 (579)
T 3sqw_A 90 ----------FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPG 159 (579)
T ss_dssp ----------TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHH
T ss_pred ----------ccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHH
Confidence 11234678999999999999999999998642 3467888899988777766654 47999999999
Q ss_pred HHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 183 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 183 ~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
+|.+++... ....+..+++||+||||++++++|...+..++..++..... ....+|+++||
T Consensus 160 ~l~~~l~~~--~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~S 220 (579)
T 3sqw_A 160 RLIDVLEKY--SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFS 220 (579)
T ss_dssp HHHHHHHHH--HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEE
T ss_pred HHHHHHHhc--cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-----------------cccCceEEEEe
Confidence 999988643 12467889999999999999999999999998877521110 11368999999
Q ss_pred eeccCc
Q 020452 263 ATIALS 268 (326)
Q Consensus 263 ATl~~~ 268 (326)
||++..
T Consensus 221 AT~~~~ 226 (579)
T 3sqw_A 221 ATLDDK 226 (579)
T ss_dssp SSCCTH
T ss_pred ccCChH
Confidence 999864
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=246.67 Aligned_cols=194 Identities=32% Similarity=0.526 Sum_probs=161.7
Q ss_pred CcccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHH
Q 020452 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEERE 102 (326)
Q Consensus 25 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~ 102 (326)
++.....++.+|+++++++.++++|+++||..|+|+|.++++.++ ++ +++++++|||+|||++|++|+++.+...
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-- 92 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-- 92 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-SSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--
Confidence 344445678899999999999999999999999999999999996 55 8999999999999999999999876321
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 103 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
..++++||++|+++|+.|+++.++.+.... ++.+....++...... ....++|+|+||
T Consensus 93 ------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~ 151 (412)
T 3fht_A 93 ------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTP 151 (412)
T ss_dssp ------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECH
T ss_pred ------------------CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECc
Confidence 335689999999999999999999997754 5777777777654322 134679999999
Q ss_pred HHHHHHHhcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEE
Q 020452 182 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 260 (326)
Q Consensus 182 ~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 260 (326)
+++.+++.+. ....+.++++||+||||++.+ .++...+..+...++ ...|+++
T Consensus 152 ~~l~~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~ 205 (412)
T 3fht_A 152 GTVLDWCSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLL 205 (412)
T ss_dssp HHHHHHHTTS--CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC------------------------TTCEEEE
T ss_pred hHHHHHHHhc--CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC------------------------CCceEEE
Confidence 9999998652 235568899999999999986 678888888888887 6789999
Q ss_pred EeeeccCc
Q 020452 261 FSATIALS 268 (326)
Q Consensus 261 ~SATl~~~ 268 (326)
+|||++..
T Consensus 206 ~SAT~~~~ 213 (412)
T 3fht_A 206 FSATFEDS 213 (412)
T ss_dssp EESCCCHH
T ss_pred EEeecCHH
Confidence 99999854
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-31 Score=257.46 Aligned_cols=207 Identities=32% Similarity=0.516 Sum_probs=165.4
Q ss_pred cccccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 34 DAWNELR----LHPLLMKSIYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 34 ~~f~~l~----l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
.+|+++. |++.+++++.++||..|+|+|.++|+.++. .++|++++||||+|||++|++|+++.+....
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~------- 140 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------- 140 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT-------
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc-------
Confidence 3455553 999999999999999999999999999864 4789999999999999999999999886542
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEEcCCCHHHHHHHH-hcCCCEEEeCcHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLL-KARPELVVGTPGR 183 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~----~~~~v~~~~g~~~~~~~~~~~-~~~~~IlV~Tp~~ 183 (326)
.....++++|||+||++|+.|+++.++.+... ....+..++|+.........+ ..+++|+|+||++
T Consensus 141 ---------~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~ 211 (563)
T 3i5x_A 141 ---------FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGR 211 (563)
T ss_dssp ---------TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHH
T ss_pred ---------ccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHH
Confidence 11234568999999999999999999997642 246688889998877766555 4589999999999
Q ss_pred HHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEee
Q 020452 184 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 263 (326)
Q Consensus 184 l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 263 (326)
+.+++.+. ....++++++||+||||++++++|...+..++..++..... ....+|+++|||
T Consensus 212 l~~~l~~~--~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SA 272 (563)
T 3i5x_A 212 LIDVLEKY--SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSA 272 (563)
T ss_dssp HHHHHHHH--HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEES
T ss_pred HHHHHHhc--cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-----------------CccCceEEEEEc
Confidence 99988653 12457889999999999999999999999998877521111 114689999999
Q ss_pred eccCc-HHHHHHh
Q 020452 264 TIALS-ADFRKKL 275 (326)
Q Consensus 264 Tl~~~-~~~~~~l 275 (326)
|+++. .++..++
T Consensus 273 T~~~~v~~~~~~~ 285 (563)
T 3i5x_A 273 TLDDKVQKLANNI 285 (563)
T ss_dssp SCCTHHHHHTTTT
T ss_pred cCCHHHHHHHHHh
Confidence 99965 3444443
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=243.95 Aligned_cols=193 Identities=32% Similarity=0.556 Sum_probs=161.1
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
+...+|+++++++.++++++++||..|+|+|.++++.++ ++ +++++++|||+|||++|++|++..+...
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------- 72 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLL-HNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-------- 72 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-CSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--------
Confidence 345789999999999999999999999999999999996 55 8999999999999999999999876321
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
..+.++||++|+++|+.|+++.++.+....++.+...+++...... ..+++|+|+||+++.+++
T Consensus 73 ------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~ 136 (395)
T 3pey_A 73 ------------DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLM 136 (395)
T ss_dssp ------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHH
T ss_pred ------------CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHH
Confidence 2456899999999999999999999988888888888876543221 236899999999999998
Q ss_pred hcCCcccccCCCeeEEeecchhHhhh-CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.+.. ..+.+++++|+||||++.+ .++...+..+...++ ...|++++|||++.
T Consensus 137 ~~~~---~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~ 189 (395)
T 3pey_A 137 RRKL---MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP------------------------KDTQLVLFSATFAD 189 (395)
T ss_dssp HTTC---BCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC------------------------TTCEEEEEESCCCH
T ss_pred HcCC---cccccCCEEEEEChhhhcCccccHHHHHHHHHhCC------------------------CCcEEEEEEecCCH
Confidence 7643 5688899999999999997 677788888888877 67899999999985
Q ss_pred c-HHHHHHh
Q 020452 268 S-ADFRKKL 275 (326)
Q Consensus 268 ~-~~~~~~l 275 (326)
. .++.+++
T Consensus 190 ~~~~~~~~~ 198 (395)
T 3pey_A 190 AVRQYAKKI 198 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 4 3444443
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=229.02 Aligned_cols=173 Identities=35% Similarity=0.633 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
|++.+.++|+++||..|+|+|.++++.++ +++++++.+|||+|||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 57899999999999999999999999985 88999999999999999999998763
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+.++||++|+++|+.|+++.++.+....+.++..++|+.........+. .++|+|+||+++.+++.... ..+.+
T Consensus 56 --~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~ 129 (337)
T 2z0m_A 56 --GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV---IDLSS 129 (337)
T ss_dssp --TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS---CCGGG
T ss_pred --cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC---cchhh
Confidence 3379999999999999999999998888899999999988877666555 48999999999999887643 45778
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
++++|+||||++.++++...+..++..++ ...+++++|||++..
T Consensus 130 ~~~iViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~SAT~~~~ 173 (337)
T 2z0m_A 130 FEIVIIDEADLMFEMGFIDDIKIILAQTS------------------------NRKITGLFSATIPEE 173 (337)
T ss_dssp CSEEEEESHHHHHHTTCHHHHHHHHHHCT------------------------TCSEEEEEESCCCHH
T ss_pred CcEEEEEChHHhhccccHHHHHHHHhhCC------------------------cccEEEEEeCcCCHH
Confidence 99999999999999999999999998887 678999999999844
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-30 Score=257.51 Aligned_cols=190 Identities=22% Similarity=0.315 Sum_probs=165.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 114 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~ 114 (326)
+|++++|++.+.+.+++.||..|+++|.++++.++.+++++++++|||||||++|.+++++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 599999999999999999999999999999998446899999999999999999999999887532
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcc
Q 020452 115 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 194 (326)
Q Consensus 115 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~ 194 (326)
+.+++|++|+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+||+++..++.+..
T Consensus 68 --------~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~-- 133 (720)
T 2zj8_A 68 --------GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS-- 133 (720)
T ss_dssp --------CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC--
T ss_pred --------CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh--
Confidence 34899999999999999999965543 48899999998654332 22468999999999998887642
Q ss_pred cccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHH
Q 020452 195 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 274 (326)
Q Consensus 195 ~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 274 (326)
..+++++++|+||+|.+.+++++..+..++..++ ...|+|++|||+++..++.+|
T Consensus 134 -~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------------------------~~~~ii~lSATl~n~~~~~~~ 188 (720)
T 2zj8_A 134 -SWIKDVKILVADEIHLIGSRDRGATLEVILAHML------------------------GKAQIIGLSATIGNPEELAEW 188 (720)
T ss_dssp -TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------------------------TTBEEEEEECCCSCHHHHHHH
T ss_pred -hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------------------------cCCeEEEEcCCcCCHHHHHHH
Confidence 4478899999999999998889999999999887 468999999999999999999
Q ss_pred hhc
Q 020452 275 LKH 277 (326)
Q Consensus 275 l~~ 277 (326)
+..
T Consensus 189 l~~ 191 (720)
T 2zj8_A 189 LNA 191 (720)
T ss_dssp TTE
T ss_pred hCC
Confidence 874
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=253.04 Aligned_cols=190 Identities=24% Similarity=0.289 Sum_probs=163.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.+|++++|++.+.+.++++||..|+++|.++++.++.+++++++++|||||||++|.+++++.+...
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 74 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------- 74 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------------
Confidence 5799999999999999999999999999999999446899999999999999999999999876421
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
+.+++|++|+++|+.|+++.++.+ ...++++..++|+...... ...+++|+|+||+++..++.+..
T Consensus 75 ---------~~~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~- 140 (715)
T 2va8_A 75 ---------GGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRP- 140 (715)
T ss_dssp ---------CSEEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCC-
T ss_pred ---------CCeEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCCh-
Confidence 348999999999999999999644 3458899999998764332 12368999999999999887643
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHH
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 273 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 273 (326)
..++++++||+||+|.+.+.+++..++.++.+++ ..|+|++|||++|.+++.+
T Consensus 141 --~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------------~~~ii~lSATl~n~~~~~~ 193 (715)
T 2va8_A 141 --EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------------RRNLLALSATISNYKQIAK 193 (715)
T ss_dssp --GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------TSEEEEEESCCTTHHHHHH
T ss_pred --hHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------cCcEEEEcCCCCCHHHHHH
Confidence 4478999999999999988889999998888774 4899999999999999999
Q ss_pred Hhhc
Q 020452 274 KLKH 277 (326)
Q Consensus 274 ~l~~ 277 (326)
|+..
T Consensus 194 ~l~~ 197 (715)
T 2va8_A 194 WLGA 197 (715)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 9974
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=252.23 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=159.3
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 35 AWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 35 ~f~~l~--l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
+|++++ |++.+.+.++++||..|+|+|.++++.+ .+++++++++|||||||++|.+++++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i-~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKV-FSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHH-TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 588898 9999999999999999999999999997 589999999999999999999999987631
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
+.+++|++|+++|+.|+++.++.+ ...++++..++|+...... ...+++|+|+||+++..++.+..
T Consensus 68 ----------~~~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~ 133 (702)
T 2p6r_A 68 ----------GGKSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA 133 (702)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC
T ss_pred ----------CCcEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh
Confidence 348999999999999999999644 3458899999998654322 12368999999999999887643
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHH
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 272 (326)
..++++++||+||+|.+.+++++..++.++..+... .+..|+|++|||+++..++.
T Consensus 134 ---~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---------------------~~~~~ii~lSATl~n~~~~~ 189 (702)
T 2p6r_A 134 ---SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---------------------NKALRVIGLSATAPNVTEIA 189 (702)
T ss_dssp ---SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH---------------------CTTCEEEEEECCCTTHHHHH
T ss_pred ---hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc---------------------CcCceEEEECCCcCCHHHHH
Confidence 447889999999999999888998888888776411 05689999999999999999
Q ss_pred HHhhc
Q 020452 273 KKLKH 277 (326)
Q Consensus 273 ~~l~~ 277 (326)
+|+..
T Consensus 190 ~~l~~ 194 (702)
T 2p6r_A 190 EWLDA 194 (702)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 99974
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=265.11 Aligned_cols=191 Identities=17% Similarity=0.220 Sum_probs=151.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
||+.++++|.+++|.++.+++|++++||||||||++|.+++++.+.+.... .......+.++||++|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~------------~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM------------DGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT------------TSSCCTTSCEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc------------cccccCCCCEEEEECCH
Confidence 899999999999999988899999999999999999999999988543110 01223456799999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
++||.|+++.+++.+...|++|..++|+...... ...+++|+|+|||++..++++. .....++++++||+||+|.+
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhc
Confidence 9999999999999999999999999999765332 2346899999999976565543 22345789999999999977
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
.+ .++..++.++.++... ........|+|++|||++|.+++++||..
T Consensus 220 ~d-~RG~~lE~~l~rl~~~-----------------~~~~~~~~riI~LSATl~N~~dvA~wL~~ 266 (1724)
T 4f92_B 220 HD-DRGPVLEALVARAIRN-----------------IEMTQEDVRLIGLSATLPNYEDVATFLRV 266 (1724)
T ss_dssp GS-TTHHHHHHHHHHHHHH-----------------HHHHTCCCEEEEEECSCTTHHHHHHHTTC
T ss_pred CC-ccHHHHHHHHHHHHHH-----------------HHhCCCCCcEEEEecccCCHHHHHHHhCC
Confidence 65 6888887777654200 00001568999999999999999999974
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=262.78 Aligned_cols=195 Identities=25% Similarity=0.309 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
|++...+++...+|..++|+|.++++.++..+.|++++||||||||++|.+|+++.+.+.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------------------- 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------------------- 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------------------
Confidence 556777888888999999999999999987889999999999999999999999988643
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHH-cCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVA-KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.+.++||++|+++||.|+++.|++.+ ...+++|+.++|+...... ...+++|+|+|||++..++++. .....++
T Consensus 971 -~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~-~~~~~l~ 1045 (1724)
T 4f92_B 971 -SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW-KQRKNVQ 1045 (1724)
T ss_dssp -TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT-TTCHHHH
T ss_pred -CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc-ccccccc
Confidence 23489999999999999999998755 4578999999998654332 2345899999999987777653 2334578
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 278 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 278 (326)
++++||+||+|.+.+ .++..++.++.++.. +......+.|+|++|||++|.+++++||...
T Consensus 1046 ~v~lvViDE~H~l~d-~rg~~le~il~rl~~-----------------i~~~~~~~~riI~lSATl~N~~dla~WL~~~ 1106 (1724)
T 4f92_B 1046 NINLFVVDEVHLIGG-ENGPVLEVICSRMRY-----------------ISSQIERPIRIVALSSSLSNAKDVAHWLGCS 1106 (1724)
T ss_dssp SCSEEEECCGGGGGS-TTHHHHHHHHHHHHH-----------------HHHTTSSCCEEEEEESCBTTHHHHHHHHTCC
T ss_pred eeeEEEeechhhcCC-CCCccHHHHHHHHHH-----------------HHhhcCCCceEEEEeCCCCCHHHHHHHhCCC
Confidence 999999999998876 577777777765531 1111126789999999999999999999754
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=255.27 Aligned_cols=183 Identities=20% Similarity=0.223 Sum_probs=160.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
...|..+++++.+...+...++..|+++|.++|+.+ .+|++++++||||||||++|.+|++..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i-~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------------- 225 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCI-DRGESVLVSAHTSAGKTVVAEYAIAQSLK-------------- 225 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHH-TTTCCEEEECCSSSHHHHHHHHHHHHHHH--------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHH-HcCCCEEEECCCCCChHHHHHHHHHHHHh--------------
Confidence 447888899988888887777779999999999998 58999999999999999999999998762
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
.+.++||++||++|+.|+++.+..++. .++.++|+... ..+++|+|+||++|.+++.++.
T Consensus 226 ---------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~ 285 (1108)
T 3l9o_A 226 ---------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS 285 (1108)
T ss_dssp ---------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc
Confidence 145899999999999999999999865 67778888763 3468999999999999987653
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHH
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 272 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 272 (326)
..+.++++|||||||++.+++++..+..++..++ ..+|+|+||||+++..++.
T Consensus 286 ---~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~------------------------~~~qvl~lSATipn~~e~a 338 (1108)
T 3l9o_A 286 ---EVMREVAWVIFDEVHYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFA 338 (1108)
T ss_dssp ---SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC------------------------TTSEEEEEECSCSSCHHHH
T ss_pred ---cccccCCEEEEhhhhhccccchHHHHHHHHHhcC------------------------CCceEEEEcCCCCCHHHHH
Confidence 4578899999999999999899999999999998 7899999999999999999
Q ss_pred HHhhc
Q 020452 273 KKLKH 277 (326)
Q Consensus 273 ~~l~~ 277 (326)
+|+..
T Consensus 339 ~~l~~ 343 (1108)
T 3l9o_A 339 EWICK 343 (1108)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=223.29 Aligned_cols=179 Identities=19% Similarity=0.187 Sum_probs=139.3
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 44 LLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 44 ~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.+.+.+++ +|| .|+|+|.++++.++ +|+|+++++|||+|||++|++|++... ..
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~-----------------------~~ 63 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RK 63 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHH-----------------------TT
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHh-----------------------cC
Confidence 34555655 577 89999999999995 889999999999999999999887764 22
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH---HHHHHHHhcC-CCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
++++||++||++|+.|+++.++.++. .++++..++|+... ..+...+..+ ++|+|+||+++.+++.. ..+
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~ 137 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQ 137 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hcc
Confidence 56899999999999999999999887 78999999999987 4445555554 99999999999888752 556
Q ss_pred CCeeEEeecchhHhhh-----------CCCHHH-HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee-c
Q 020452 199 HTLSFFVLDEADRMIE-----------NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT-I 265 (326)
Q Consensus 199 ~~l~~lViDEah~l~~-----------~~~~~~-i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT-l 265 (326)
.++++||+||||++.+ .+|... +..++..++...... .-......|++++||| .
T Consensus 138 ~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~-------------~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 138 KRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYE-------------RPKNLKPGILVVSSATAK 204 (414)
T ss_dssp CCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCC-------------CCTTCCCCEEEESSCCSS
T ss_pred ccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhh-------------hcccCCCceEEEEecCCC
Confidence 7899999999987653 667666 777777664100000 0000145899999999 4
Q ss_pred c
Q 020452 266 A 266 (326)
Q Consensus 266 ~ 266 (326)
+
T Consensus 205 ~ 205 (414)
T 3oiy_A 205 P 205 (414)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=228.73 Aligned_cols=188 Identities=20% Similarity=0.256 Sum_probs=147.6
Q ss_pred cccccc--cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020452 32 EFDAWN--ELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108 (326)
Q Consensus 32 ~~~~f~--~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~ 108 (326)
....|+ ++++++.+.+.|+. +||..|+|+|.++|+.++ +|+|+++.+|||+|||++|++|++..
T Consensus 17 ~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~~------------ 83 (591)
T 2v1x_A 17 SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALCS------------ 83 (591)
T ss_dssp CGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHTS------------
T ss_pred chhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHHc------------
Confidence 334554 58899999999998 799999999999999995 89999999999999999999999752
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH------hcCCCEEEeCcH
Q 020452 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------KARPELVVGTPG 182 (326)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~IlV~Tp~ 182 (326)
..++|||+|+++|+.|+.+.+..+ ++++..++|+.........+ ...++|+|+||+
T Consensus 84 --------------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 --------------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp --------------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred --------------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 238999999999999999999987 78889999998876554332 347899999999
Q ss_pred HHHH---HHhcCCcccccCCCeeEEeecchhHhhhCC--CHHHHH---HHHHhCCCCCCCCCCCcccccccccccccCCC
Q 020452 183 RLWE---LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 254 (326)
Q Consensus 183 ~l~~---ll~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~i~---~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (326)
+|.. ++... .....+.+++++||||||++.+++ |...+. .+...+ +
T Consensus 146 ~L~~~~~~~~~l-~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-------------------------~ 199 (591)
T 2v1x_A 146 KIAKSKMFMSRL-EKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------P 199 (591)
T ss_dssp HHHSCHHHHHHH-HHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-------------------------T
T ss_pred HhhccHHHHHHH-HhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-------------------------C
Confidence 8742 22110 112457789999999999999887 544433 233333 4
Q ss_pred CceEEEEeeeccCc--HHHHHHhh
Q 020452 255 KRQTLVFSATIALS--ADFRKKLK 276 (326)
Q Consensus 255 ~~q~i~~SATl~~~--~~~~~~l~ 276 (326)
..|++++|||++.. .++.++|.
T Consensus 200 ~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 200 NASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHTT
T ss_pred CCcEEEEecCCCHHHHHHHHHHhC
Confidence 58999999999854 45566664
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=225.27 Aligned_cols=185 Identities=19% Similarity=0.235 Sum_probs=147.7
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.++ +|+|+++.+|||+|||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 3589999999999999998 999999999999999995 89999999999999999999998742
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH----HHhcCCCEEEeCcHHHHHH
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~Tp~~l~~l 187 (326)
..++||++|+++|+.|+.+.++.+ ++.+..++|+........ .....++|+|+||+++...
T Consensus 65 -----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~ 129 (523)
T 1oyw_A 65 -----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129 (523)
T ss_dssp -----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST
T ss_pred -----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh
Confidence 237999999999999999999875 788888998887655432 2235689999999998422
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhhCC--CHHH---HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEe
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~---i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 262 (326)
. ........++++||+||||++.++| |... +..+...++ ..|++++|
T Consensus 130 ~---~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------------------------~~~~i~lS 181 (523)
T 1oyw_A 130 N---FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------------------------TLPFMALT 181 (523)
T ss_dssp T---HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------------------------TSCEEEEE
T ss_pred H---HHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-------------------------CCCEEEEe
Confidence 1 1112334789999999999999876 5443 334444443 57999999
Q ss_pred eeccCc--HHHHHHhh
Q 020452 263 ATIALS--ADFRKKLK 276 (326)
Q Consensus 263 ATl~~~--~~~~~~l~ 276 (326)
||++.. .++.+++.
T Consensus 182 AT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 182 ATADDTTRQDIVRLLG 197 (523)
T ss_dssp SCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 999865 56777775
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=223.67 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=136.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
++...|+|+|.++++.++ +|+|+++++|||+|||++|++|+++.+... ....+.++||++|
T Consensus 3 ~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P 63 (556)
T 4a2p_A 3 METKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLAT 63 (556)
T ss_dssp -----CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECS
T ss_pred CCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhC------------------cccCCCeEEEEeC
Confidence 344589999999999995 799999999999999999999999887432 1122568999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
|++|+.|+++.++.++...++++..++|+.........+..+++|+|+||++|.+++..+. ...+.++++||+||||+
T Consensus 64 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~ 141 (556)
T 4a2p_A 64 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHN 141 (556)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGG
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcc
Confidence 9999999999999999888999999999987766666666679999999999999997653 12688899999999999
Q ss_pred hhhCCCHHHHH-HHH-HhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc--CcHHHHHHhh
Q 020452 212 MIENGHFRELQ-SII-DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--LSADFRKKLK 276 (326)
Q Consensus 212 l~~~~~~~~i~-~il-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--~~~~~~~~l~ 276 (326)
+.+++.+..+. ..+ ..+.. ..+..|++++|||++ +..++.+|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~lSAT~~~~~~~~~~~~~~ 189 (556)
T 4a2p_A 142 TTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVGVGNAKNIEETIE 189 (556)
T ss_dssp CSTTSHHHHHHHHHHHHHHCC------------------------CCEEEEEESCCCCTTCSSHHHHHH
T ss_pred cCCcchHHHHHHHHHHhhhcc---------------------cCCCCeEEEEeCCcccCchhhHHHHHH
Confidence 98776544442 222 22210 014589999999995 4445555543
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=236.51 Aligned_cols=165 Identities=22% Similarity=0.293 Sum_probs=144.2
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 49 l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
...++| .|+++|.++++.+ .+|+++++++|||+|||++|.++++..+. .+.++||
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l-~~g~~vLV~apTGSGKTlva~lai~~~l~-----------------------~g~rvL~ 134 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCI-DRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------------------NKQRVIY 134 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHH-HHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------------------TTCEEEE
T ss_pred HHhCCC-CCCHHHHHHHHHH-HcCCCEEEECCCCCChHHHHHHHHHHHhc-----------------------cCCeEEE
Confidence 445688 5999999999998 58999999999999999999999887662 1458999
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecc
Q 020452 129 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 208 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDE 208 (326)
++|+++|+.|+++.+..++. +++.++|+.... .+++|+|+||++|..++.++. ..+.++++|||||
T Consensus 135 l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDE 200 (1010)
T 2xgj_A 135 TSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDE 200 (1010)
T ss_dssp EESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEET
T ss_pred ECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEec
Confidence 99999999999999999865 677888887642 357999999999999887543 5678999999999
Q ss_pred hhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhh
Q 020452 209 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 276 (326)
Q Consensus 209 ah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 276 (326)
+|++.+++++..++.++..++ ...|+|++|||++|..+|.+|+.
T Consensus 201 aH~l~d~~rg~~~e~il~~l~------------------------~~~~il~LSATi~n~~e~a~~l~ 244 (1010)
T 2xgj_A 201 VHYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFAEWIC 244 (1010)
T ss_dssp GGGGGCTTTHHHHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHhcC------------------------CCCeEEEEcCCCCCHHHHHHHHH
Confidence 999999999999999999998 67999999999999999999986
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-26 Score=235.50 Aligned_cols=166 Identities=21% Similarity=0.294 Sum_probs=143.0
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.++| .|+++|.++|+.++ +|+++++++|||+|||++|++++...+. .+.++||++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------------------~g~~vlvl~ 89 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------------------NMTKTIYTS 89 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHH-----------------------TTCEEEEEE
T ss_pred hCCC-CCCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHh-----------------------cCCeEEEEe
Confidence 4677 68999999999985 8999999999999999999998877541 145899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
|+++|+.|+++.+..++. ++++..++|+... ...++|+|+||++|..++.... ..+.++++|||||||
T Consensus 90 PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH 157 (997)
T 4a4z_A 90 PIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVH 157 (997)
T ss_dssp SCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTT
T ss_pred CCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcc
Confidence 999999999999988754 6788889998753 2357999999999999886543 457889999999999
Q ss_pred HhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 211 ~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
++.+++++..+..++..++ ...|+|++|||+++..+|.+|+..
T Consensus 158 ~l~d~~~g~~~e~ii~~l~------------------------~~v~iIlLSAT~~n~~ef~~~l~~ 200 (997)
T 4a4z_A 158 YVNDQDRGVVWEEVIIMLP------------------------QHVKFILLSATVPNTYEFANWIGR 200 (997)
T ss_dssp CCCTTCTTCCHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhcc------------------------cCCCEEEEcCCCCChHHHHHHHhc
Confidence 9999999989999999998 779999999999999999999863
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=224.35 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=137.0
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 125 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (326)
..+++.+||..|+++|.++++.++ +|+|+++++|||+|||++|++|+++.+.... ...+.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------~~~~~~ 63 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------QGQKGK 63 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------------------TTCCCC
T ss_pred CCcccccCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------------------cCCCCe
Confidence 456788999999999999999985 8999999999999999999999998774321 122358
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEe
Q 020452 126 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205 (326)
Q Consensus 126 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lV 205 (326)
+||++||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||++|.+.+..+. ...+.++++||
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vV 141 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMI 141 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEE
Confidence 9999999999999999999999888899999999886555555555679999999999999997653 12578899999
Q ss_pred ecchhHhhhCCCHHHHH-HHHHh-CCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 206 LDEADRMIENGHFRELQ-SIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 206 iDEah~l~~~~~~~~i~-~il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|||||++.+...+..+. ..+.. +.. ......|++++|||+.
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~~--------------------~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLGG--------------------SSGPLPQVIGLTASVG 184 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTT--------------------CCSCCCEEEEEESCCC
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhcc--------------------cCCCCCeEEEEeCccc
Confidence 99999988554333222 12221 110 0014689999999997
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=191.15 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=109.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.+...|+++|.++++.++ +++++++.+|||+|||++|+++++..+...... ..+.++||++|
T Consensus 29 ~~~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----------------~~~~~~lil~p 90 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----------------SEPGKVIVLVN 90 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----------------TCCCCEEEEES
T ss_pred cCCCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----------------cCCCcEEEEEC
Confidence 344589999999999985 789999999999999999999998877544211 23458999999
Q ss_pred cHHHHHH-HHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQ-VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q-~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+++|+.| +.+.+..+... ++++..++|+............+++|+|+||+++...+..... ....+.++++||+|
T Consensus 91 ~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiD 169 (216)
T 3b6e_A 91 KVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 169 (216)
T ss_dssp SHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEET
T ss_pred HHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEE
Confidence 9999999 77888887764 6788888887654433333444689999999999998875421 11446789999999
Q ss_pred chhHhhhCCCHHHHH
Q 020452 208 EADRMIENGHFRELQ 222 (326)
Q Consensus 208 Eah~l~~~~~~~~i~ 222 (326)
|||++.+.+++..+.
T Consensus 170 Eah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 170 ECHHTNKEAVYNNIM 184 (216)
T ss_dssp TC-------CHHHHH
T ss_pred CchhhccCCcHHHHH
Confidence 999998777766653
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-25 Score=215.13 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|.++++.++ +|+++++++|||+|||++|++|+++.+... ....+.++||++||++|
T Consensus 4 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~~~L 64 (555)
T 3tbk_A 4 KPRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKF------------------PCGQKGKVVFFANQIPV 64 (555)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSSHHH
T ss_pred CCcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------ccCCCCEEEEEeCCHHH
Confidence 79999999999995 899999999999999999999999887432 11235689999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+++.++.++...++++..++|+.........+..+++|+|+||+++.+++..+. ...+.++++||+||||++.+.
T Consensus 65 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 65 YEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTT
T ss_pred HHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCc
Confidence 999999999999988999999999987665555556679999999999999997653 125788999999999999876
Q ss_pred CCHHHH-HHHHHh-CCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 216 GHFREL-QSIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 216 ~~~~~i-~~il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+.+..+ ...+.. +.. ......|++++|||++.
T Consensus 143 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 143 HPYNQIMFRYLDHKLGE--------------------SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CHHHHHHHHHHHHHTSS--------------------CCSCCCEEEEEESCCCC
T ss_pred chHHHHHHHHHHhhhcc--------------------ccCCCCeEEEEecCccc
Confidence 533332 233222 110 00145799999999964
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=223.32 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=132.8
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
.-+|+..|+|+|.++++.++ +|+|+++++|||+|||++|++|++..+... ....+.++||+
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~~Lvl 302 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFL 302 (797)
T ss_dssp ------CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEE
T ss_pred hhcCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------cccCCCeEEEE
Confidence 34688899999999999995 899999999999999999999999887432 11225689999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecch
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 209 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEa 209 (326)
+|+++|+.|+++.++.++...++++..++|+.........+..+++|+|+||++|.+.+..+. ...+.++++||+|||
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEa 380 (797)
T 4a2q_A 303 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDEC 380 (797)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTG
T ss_pred eCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECc
Confidence 999999999999999999888999999999987776666677789999999999999997643 125788999999999
Q ss_pred hHhhhCCCHHHHH-HHHHh-CCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 210 DRMIENGHFRELQ-SIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 210 h~l~~~~~~~~i~-~il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|++.+.+.+..+. ..+.. +.. .....|++++|||++
T Consensus 381 H~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 381 HNTTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVG 418 (797)
T ss_dssp GGCSTTSHHHHHHHHHHHHHHTT---------------------CCCCCEEEEEESCCC
T ss_pred cccCCCccHHHHHHHHHHHhhcc---------------------CCCCCeEEEEcCCcc
Confidence 9998765444332 22221 110 015689999999995
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=226.22 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=138.5
Q ss_pred HHHHH-HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 46 MKSIY-RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 46 ~~~l~-~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
.+.++ .+|| .|+|+|.++++.++ +|+|++++||||||||++|+++++..+ ..++
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~-----------------------~~~~ 122 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RKGK 122 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHH-----------------------TTTC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHH-----------------------hcCC
Confidence 33443 4788 79999999999995 899999999999999998888877765 2256
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH---HHHHHHHhcC-CCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
++||++||++|+.|+++.++.+. ..++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.+
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~ 196 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKR 196 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSC
T ss_pred eEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccC
Confidence 89999999999999999999976 678999999999987 5555666655 99999999999888752 56788
Q ss_pred eeEEeecchhHh----------hh-CCCHHH-HHHHHHhCCCC--CCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 201 LSFFVLDEADRM----------IE-NGHFRE-LQSIIDMLPMT--NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 201 l~~lViDEah~l----------~~-~~~~~~-i~~il~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
+++||+||||++ ++ ++|... +..++..++.. .... ..+...|+++||||+
T Consensus 197 l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~---------------~~~~~~q~ll~SAT~ 260 (1104)
T 4ddu_A 197 FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERP---------------KNLKPGILVVSSATA 260 (1104)
T ss_dssp CSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCC---------------SSCCCCEEEEECBSS
T ss_pred cCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhh---------------ccCCCceEEEEcCCC
Confidence 999999999654 45 788777 88888876510 0000 001458999999994
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=228.77 Aligned_cols=171 Identities=19% Similarity=0.251 Sum_probs=137.9
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 50 YRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 50 ~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
+.+||. | ++|.++|+.++ +|+|++++||||||||+ |.+|++..+.. .++++||+
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------------------~~~~~lil 105 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL----------------------KGKRCYVI 105 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT----------------------TSCCEEEE
T ss_pred HhcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------------------cCCeEEEE
Confidence 348998 9 99999999996 89999999999999998 88888877632 25689999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCc----EEEEEEcCCCHHHH---HHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 130 TPTRELALQVTDHLKEVAKGINV----RVVPIVGGMSTEKQ---ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~----~v~~~~g~~~~~~~---~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+||++|+.|+++.++.++...++ ++..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.+++
T Consensus 106 ~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~ 177 (1054)
T 1gku_B 106 FPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFD 177 (1054)
T ss_dssp ESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCS
T ss_pred eccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCC
Confidence 99999999999999999998888 89999999887664 333344 99999999999987743 66899
Q ss_pred EEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 203 ~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
+||+||||+|++ ++..+..++..+........ .......|++++|||++...
T Consensus 178 ~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~-------------~~~~~~~q~~l~SAT~t~~~ 229 (1054)
T 1gku_B 178 FIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT-------------KSWVGEARGCLMVSTATAKK 229 (1054)
T ss_dssp EEEESCHHHHHT--STHHHHHHHHHTTEEEETTT-------------TEEEECCSSEEEECCCCSCC
T ss_pred EEEEeChhhhhh--ccccHHHHHHHhCcchhhhh-------------hhcccCCceEEEEecCCCch
Confidence 999999999998 56788888887751100000 00114578999999998764
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=215.94 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=126.1
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.+|| .|+++|..++|.++ .|+ ++.++||+|||++|.+|++...+ .+..++||+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL-----------------------~g~~vlVlt 131 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNAL-----------------------TGKGVHVVT 131 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCEEEEE
T ss_pred HcCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHH-----------------------cCCCEEEEe
Confidence 5899 99999999999985 787 99999999999999999985431 144799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEee
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 206 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lVi 206 (326)
||++||.|+++++..+...+|+++++++||.+...+.. ..++||+||||++| .+++...- .....+..+.++|+
T Consensus 132 ptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 132 VNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 99999999999999999999999999999988754433 34699999999999 67765431 12355788999999
Q ss_pred cchhHhh-hCC---------------CHHHHHHHHHhCC
Q 020452 207 DEADRMI-ENG---------------HFRELQSIIDMLP 229 (326)
Q Consensus 207 DEah~l~-~~~---------------~~~~i~~il~~l~ 229 (326)
||||.|+ +.+ |+..+..++..++
T Consensus 210 DEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~ 248 (844)
T 1tf5_A 210 DEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLK 248 (844)
T ss_dssp ETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCC
T ss_pred CchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCc
Confidence 9999998 664 6788999998886
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=219.97 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=130.8
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 020452 45 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 124 (326)
Q Consensus 45 i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (326)
+.....-.|+..|+++|.++++.++ +|+++++++|||+|||++|++|++..+... ....+.
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~ 297 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKA 297 (936)
T ss_dssp -----------CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------CSSCCC
T ss_pred hcCcccccCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------cccCCC
Confidence 3333344578899999999999995 899999999999999999999998876321 112256
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEE
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~l 204 (326)
++||++||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+.+..+. ...+.++++|
T Consensus 298 ~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~li 375 (936)
T 4a2w_A 298 KVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLM 375 (936)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEE
Confidence 89999999999999999999999988999999999987666555566678999999999999997643 2257789999
Q ss_pred eecchhHhhhCCCHHHHH-HHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 205 VLDEADRMIENGHFRELQ-SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 205 ViDEah~l~~~~~~~~i~-~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
|+||||++...+.+..+. .++..... ......|++++|||+.
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFN--------------------SASQLPQILGLTASVG 418 (936)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHT--------------------TCSCCCEEEEEESCCC
T ss_pred EEECccccCCCccHHHHHHHHHHHhhc--------------------cCCCcCeEEEecCCcc
Confidence 999999998665333332 22221100 0115689999999995
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=183.98 Aligned_cols=182 Identities=17% Similarity=0.175 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
.++.+.+.+...+...++++|.++++.+ .+|++++++||||||||.++.++++....... .
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i-~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~ 106 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAI-SQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------R 106 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHH-HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------C
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHH-hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------C
Confidence 4444444444444446799999999998 58999999999999999999888887664321 1
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
..+.++++++|+++|+.|+++.+..... ..+..++........ ....+++|+|+||+++.+++.. .++
T Consensus 107 ~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~------~l~ 175 (235)
T 3llm_A 107 AAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA------GIR 175 (235)
T ss_dssp GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH------CCT
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh------hhc
Confidence 2245899999999999999888876543 233444332221110 0013578999999999999864 378
Q ss_pred CeeEEeecchhHh-hhCCCH-HHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhc
Q 020452 200 TLSFFVLDEADRM-IENGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 277 (326)
Q Consensus 200 ~l~~lViDEah~l-~~~~~~-~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 277 (326)
++++||+||||.+ ++.++. ..+..++... ++.|+++||||+++.. +.+|+..
T Consensus 176 ~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-------------------------~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 176 GISHVIVDEIHERDINTDFLLVVLRDVVQAY-------------------------PEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp TCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-------------------------TTSEEEEEECSSCCHH-HHHHTTS
T ss_pred CCcEEEEECCccCCcchHHHHHHHHHHHhhC-------------------------CCCeEEEEecCCCHHH-HHHHcCC
Confidence 8999999999986 666665 4556666554 3589999999998665 8888764
Q ss_pred c
Q 020452 278 G 278 (326)
Q Consensus 278 ~ 278 (326)
.
T Consensus 230 ~ 230 (235)
T 3llm_A 230 C 230 (235)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=206.19 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=113.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|..++|.++ .|+ ++.++||+|||++|++|++...+ .+.+++|++|
T Consensus 71 lg~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------------------~g~~vlVltP 123 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNAL-----------------------TGKGVHVVTV 123 (853)
T ss_dssp HSC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCCEEEES
T ss_pred cCC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHH-----------------------cCCcEEEEcC
Confidence 676 89999999999985 777 99999999999999999986542 1447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViD 207 (326)
|++||.|+++.+..++..+++++++++||.+... +....+++|+||||++| .++++.+. .....++++.++|+|
T Consensus 124 TreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlD 201 (853)
T 2fsf_A 124 NDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVD 201 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEES
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEEC
Confidence 9999999999999999999999999999988643 33344699999999999 78886542 123557899999999
Q ss_pred chhHhh-hC---------------CCHHHHHHHHHhCC
Q 020452 208 EADRMI-EN---------------GHFRELQSIIDMLP 229 (326)
Q Consensus 208 Eah~l~-~~---------------~~~~~i~~il~~l~ 229 (326)
|||.|+ +. +++..+..++..++
T Consensus 202 EaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 202 EVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp CHHHHTTTTTTCEEEEEEC-------------------
T ss_pred chHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 999999 54 35778888888886
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=188.04 Aligned_cols=154 Identities=22% Similarity=0.185 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|.++++.++ .+++.++++|||+|||.++++++...+.. +..++||++|+++|
T Consensus 113 ~l~~~Q~~ai~~~l-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~~lil~Pt~~L 169 (282)
T 1rif_A 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTAL 169 (282)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEECCCTTSCHHHHHHHHHHHHHHH----------------------CSSEEEEECSSHHH
T ss_pred CccHHHHHHHHHHH-hcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------------------CCCeEEEEECCHHH
Confidence 89999999999986 56788899999999999998877765421 12389999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+.+.++++....+..+..+.|+..... ....+.+|+|+||+.+.... ...+.+++++|+||||++.+
T Consensus 170 ~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp HHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc-
Confidence 999999999987666677777877765422 11246899999999874321 13467899999999999874
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
..+..++..+. ...+++++|||+++..
T Consensus 240 ---~~~~~il~~~~------------------------~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 240 ---KSISSIISGLN------------------------NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp ---HHHHHHTTTCT------------------------TCCEEEEECSSCCTTS
T ss_pred ---ccHHHHHHHhh------------------------cCCeEEEEeCCCCCcc
Confidence 36677777765 5689999999998664
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=189.88 Aligned_cols=161 Identities=22% Similarity=0.300 Sum_probs=130.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|.++++.++ .+ ++++.+|||+|||++++++++..+. . .+.++||++|+++|
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~---------------------~~~~~liv~P~~~L 64 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLT-K---------------------YGGKVLMLAPTKPL 64 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHH-H---------------------SCSCEEEECSSHHH
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHh-c---------------------CCCeEEEEECCHHH
Confidence 79999999999985 56 9999999999999999999988764 1 14489999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+.+.+.+++...+.++..++|+.........+ .+++|+|+||+.+...+..+. ..+.++++||+||||++.+.
T Consensus 65 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCC---cchhhceEEEEECCcccCCC
Confidence 99999999998754455888999998876554433 358999999999999887543 56788999999999999866
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+..+...+.... ...+++++|||+.+.
T Consensus 141 ~~~~~~~~~~~~~~------------------------~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 141 YAYVFIAREYKRQA------------------------KNPLVIGLTASPGST 169 (494)
T ss_dssp CHHHHHHHHHHHHC------------------------SSCCEEEEESCSCSS
T ss_pred CcHHHHHHHHHhcC------------------------CCCeEEEEecCCCCC
Confidence 55555555555444 568999999999854
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-23 Score=207.48 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=112.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|.++++.++ +|+++++.+|||+|||++|++|++..+...... ..+.++||++|+++|
T Consensus 7 ~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----------------~~~~~vlvl~P~~~L 68 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----------------SEPGKVIVLVNKVLL 68 (699)
T ss_dssp CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----------------TCCCCBCCEESCSHH
T ss_pred CccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----------------CCCCeEEEEECCHHH
Confidence 79999999999996 799999999999999999999999988765321 223589999999999
Q ss_pred HHHH-HHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC---cccccCCCeeEEeecchhH
Q 020452 136 ALQV-TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE---KHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 136 ~~Q~-~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~---~~~~~l~~l~~lViDEah~ 211 (326)
+.|+ .+.++.++.. ++++..++|+.........+..+++|+|+||++|.+.+.+.. .....+.++++|||||||+
T Consensus 69 ~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 69 VEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp HHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred HHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 9999 9999999875 488999999876655555556789999999999998884321 2235678899999999999
Q ss_pred hhhCCC
Q 020452 212 MIENGH 217 (326)
Q Consensus 212 l~~~~~ 217 (326)
+....+
T Consensus 148 ~~~~~~ 153 (699)
T 4gl2_A 148 TNKEAV 153 (699)
T ss_dssp CBTTBS
T ss_pred cCccch
Confidence 875443
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=200.07 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=126.1
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 020452 51 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 130 (326)
.+|+ .|+++|..++|.++ .|+ |+.++||+|||++|.+|++...+. +.+++|++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------------------g~~v~VvT 159 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNALA-----------------------GNGVHIVT 159 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHTT-----------------------TSCEEEEE
T ss_pred HcCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHHh-----------------------CCCeEEEe
Confidence 4899 99999999999985 777 999999999999999999765421 33799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEee
Q 020452 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 206 (326)
Q Consensus 131 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lVi 206 (326)
||++||.|.++++..+...+|+++++++|+.+..... ...++||+||||++| .+++..+. .....+..+.++|+
T Consensus 160 pTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 160 VNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEE
Confidence 9999999999999999999999999999998864433 333689999999999 78886542 12356788999999
Q ss_pred cchhHhh-hC---------------CCHHHHHHHHHhCC
Q 020452 207 DEADRMI-EN---------------GHFRELQSIIDMLP 229 (326)
Q Consensus 207 DEah~l~-~~---------------~~~~~i~~il~~l~ 229 (326)
||||.|+ +. +|+..+..++..++
T Consensus 238 DEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 238 DEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp TTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred eChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 9999998 42 57889999999987
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-22 Score=200.03 Aligned_cols=139 Identities=24% Similarity=0.352 Sum_probs=115.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhc---C--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAHQ---G--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
+.+.+.++.+|| .|+++|.++++.++.. + +++++++|||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 445555678999 9999999999998532 1 599999999999999999999987632
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hhc-CCCEEEeCcHHHHHHHhcCCc
Q 020452 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LKA-RPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 118 ~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
+.+++|++||++|+.|+++.+.+++...++++..++|+......... +.. .++|+|+||+.+.+.
T Consensus 417 -----g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------ 485 (780)
T 1gm5_A 417 -----GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED------ 485 (780)
T ss_dssp -----TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC------
T ss_pred -----CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh------
Confidence 34899999999999999999999998889999999999987654332 333 589999999887431
Q ss_pred ccccCCCeeEEeecchhHhh
Q 020452 194 HLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~ 213 (326)
..+.+++++|+||+|++.
T Consensus 486 --~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 486 --VHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp --CCCSCCCEEEEESCCCC-
T ss_pred --hhccCCceEEecccchhh
Confidence 457889999999999863
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-22 Score=192.26 Aligned_cols=154 Identities=22% Similarity=0.192 Sum_probs=124.5
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..|+++|.++++.++ +++++++++|||+|||++|+.++...+.. ++.++||++|+++
T Consensus 112 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~vlvl~P~~~ 168 (510)
T 2oca_A 112 IEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTA 168 (510)
T ss_dssp ECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------CSSEEEEEESSHH
T ss_pred CCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------CCCeEEEEECcHH
Confidence 389999999999986 67999999999999999999888776532 1238999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
|+.|+++.++.+....+..+..++|+.....+ .....+|+|+||+.+.. .. ...+.++++||+||+|++..
T Consensus 169 L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~---~~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 169 LTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QP---KEWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SC---GGGGGGEEEEEEETGGGCCH
T ss_pred HHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---ch---hhhhhcCCEEEEECCcCCCc
Confidence 99999999998866666788888888765443 34578999999997632 21 24567899999999999875
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+..++..++ ...+++++|||+++.
T Consensus 240 ----~~~~~il~~~~------------------------~~~~~l~lSATp~~~ 265 (510)
T 2oca_A 240 ----KSISSIISGLN------------------------NCMFKFGLSGSLRDG 265 (510)
T ss_dssp ----HHHHHHGGGCT------------------------TCCEEEEEESCGGGC
T ss_pred ----ccHHHHHHhcc------------------------cCcEEEEEEeCCCCC
Confidence 45667777775 567999999999755
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=196.83 Aligned_cols=167 Identities=22% Similarity=0.259 Sum_probs=130.6
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHh---cCC--cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 39 LRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAH---QGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 39 l~l~~~i~~~l~-~~g~~~p~~~Q~~~i~~~l~---~g~--dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
+++++.+.+.+. .+|| .|||+|.++++.++. +|+ |+++++|||+|||.+|+.+++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 456666766664 4788 579999999999864 255 9999999999999999988877541
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH---Hh-cCCCEEEeCcHHHHHHH
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELM 188 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~~IlV~Tp~~l~~ll 188 (326)
.+.+++|++||++|+.|+++.+.+.+...++++..++|.......... +. ..++|+|+||+.+.
T Consensus 651 ---------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~--- 718 (1151)
T 2eyq_A 651 ---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ--- 718 (1151)
T ss_dssp ---------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH---
T ss_pred ---------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---
Confidence 245999999999999999999999988888999999988776554332 33 35899999997652
Q ss_pred hcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.. ..++++++||+||+|++. .....++..++ ...+++++|||+.
T Consensus 719 -~~----~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~------------------------~~~~vl~lSATp~ 762 (1151)
T 2eyq_A 719 -SD----VKFKDLGLLIVDEEHRFG-----VRHKERIKAMR------------------------ANVDILTLTATPI 762 (1151)
T ss_dssp -SC----CCCSSEEEEEEESGGGSC-----HHHHHHHHHHH------------------------TTSEEEEEESSCC
T ss_pred -CC----ccccccceEEEechHhcC-----hHHHHHHHHhc------------------------CCCCEEEEcCCCC
Confidence 21 557899999999999953 23344555554 5689999999985
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=179.77 Aligned_cols=138 Identities=21% Similarity=0.138 Sum_probs=112.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|.++++.++ .++++++++|||+|||++|+.++... +.++||++|+++|
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~--------------------------~~~~Lvl~P~~~L 145 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEECCHHH
Confidence 68999999999985 77889999999999999998887653 2379999999999
Q ss_pred HHHHHHHHHHHHcCCCcE-EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.|+.+.+..+ +++ +..++|+... ..+|+|+||+.+...+.. ...++++||+||+|++.+
T Consensus 146 ~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 146 AEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp HHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTS
T ss_pred HHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCC
Confidence 99999999884 677 8888887642 579999999998776631 124589999999999988
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.++.. ++..++ ..+++++|||+...
T Consensus 207 ~~~~~----~~~~~~-------------------------~~~~l~lSATp~~~ 231 (472)
T 2fwr_A 207 ESYVQ----IAQMSI-------------------------APFRLGLTATFERE 231 (472)
T ss_dssp TTTHH----HHHTCC-------------------------CSEEEEEESCCCCT
T ss_pred hHHHH----HHHhcC-------------------------CCeEEEEecCccCC
Confidence 77654 444443 46899999999743
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=187.16 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=136.7
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020452 30 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 109 (326)
Q Consensus 30 ~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~ 109 (326)
+.++..|+++++++.+.+.++..+ ..|++.|+.+|+.++..+++++++||||||||. ++|++. .....
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~------- 135 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDEM------- 135 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHHC-------
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhcc-------
Confidence 456788999999999999999988 689999999999998788899999999999998 456552 11110
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHH
Q 020452 110 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 188 (326)
Q Consensus 110 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll 188 (326)
....+.+++|++|+++|+.|+++.+..... ..+..++....... ....+.+|+|+||+++.+.+
T Consensus 136 ---------~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l 200 (773)
T 2xau_A 136 ---------PHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREA 200 (773)
T ss_dssp ---------GGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHH
T ss_pred ---------ccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHH
Confidence 001245799999999999999987765532 12222222111100 01236789999999999877
Q ss_pred hcCCcccccCCCeeEEeecchhH-hhhCCC-HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 189 SGGEKHLVELHTLSFFVLDEADR-MIENGH-FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 189 ~~~~~~~~~l~~l~~lViDEah~-l~~~~~-~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
... ..+.++++||+||+|. +++..+ ...+..+.... +..|++++|||+
T Consensus 201 ~~~----~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-------------------------~~~~iIl~SAT~- 250 (773)
T 2xau_A 201 MED----HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-------------------------PDLKIIIMSATL- 250 (773)
T ss_dssp HHS----TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-------------------------TTCEEEEEESCS-
T ss_pred hhC----ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-------------------------CCceEEEEeccc-
Confidence 543 4588999999999995 554322 23333443332 358999999999
Q ss_pred CcHHHHHHhhc
Q 020452 267 LSADFRKKLKH 277 (326)
Q Consensus 267 ~~~~~~~~l~~ 277 (326)
+.+.+.+|+..
T Consensus 251 ~~~~l~~~~~~ 261 (773)
T 2xau_A 251 DAEKFQRYFND 261 (773)
T ss_dssp CCHHHHHHTTS
T ss_pred cHHHHHHHhcC
Confidence 47788888864
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=180.44 Aligned_cols=150 Identities=20% Similarity=0.285 Sum_probs=121.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|+ .|+++|..++|.++ +|+ ++.+.||+|||++|.+|++...+. +.+++|++|
T Consensus 76 lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL~-----------------------G~qv~VvTP 128 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNALT-----------------------GKGVHVVTV 128 (997)
T ss_dssp TCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHTT-----------------------CSCCEEEES
T ss_pred hCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHHh-----------------------CCCEEEEeC
Confidence 899 99999999999985 777 999999999999999999754321 347999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCC---CeeEE
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELH---TLSFF 204 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~---~l~~l 204 (326)
|++||.|.++.+..++..+|+++++++|+.+.... ....++||+||||++| ++++..+. .....++ .+.++
T Consensus 129 TreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~l 206 (997)
T 2ipc_A 129 NDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYA 206 (997)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceE
Confidence 99999999999999999999999999999885433 3334699999999999 88887652 1124567 89999
Q ss_pred eecchhHhh-hCCC---------------HHHHHHHHHhCCC
Q 020452 205 VLDEADRMI-ENGH---------------FRELQSIIDMLPM 230 (326)
Q Consensus 205 ViDEah~l~-~~~~---------------~~~i~~il~~l~~ 230 (326)
|+||+|.|+ +.++ +..+..++..|+.
T Consensus 207 IIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~ 248 (997)
T 2ipc_A 207 IIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLER 248 (997)
T ss_dssp EETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCC
T ss_pred EEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhh
Confidence 999999998 3322 3455666777653
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=160.75 Aligned_cols=139 Identities=21% Similarity=0.134 Sum_probs=108.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|.+++..++ .++++++++|||+|||.+++.++... +.+++|++|+++|
T Consensus 93 ~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~--------------------------~~~~liv~P~~~L 145 (237)
T 2fz4_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (237)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeCCHHH
Confidence 78999999999985 67889999999999999988776542 2379999999999
Q ss_pred HHHHHHHHHHHHcCCCcE-EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.|+.+.+..+ +++ +..+.|+.. ...+|+|+|++.+...... ...++++||+||+|++.+
T Consensus 146 ~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 146 AEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp HHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCT
T ss_pred HHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCC
Confidence 99999988874 677 777777654 2579999999998765531 124589999999999976
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcH
Q 020452 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 269 (326)
Q Consensus 215 ~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 269 (326)
..+. .++..++ ..+++++|||....+
T Consensus 207 ~~~~----~i~~~~~-------------------------~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 207 ESYV----QIAQMSI-------------------------APFRLGLTATFERED 232 (237)
T ss_dssp TTHH----HHHHTCC-------------------------CSEEEEEEESCC---
T ss_pred hHHH----HHHHhcc-------------------------CCEEEEEecCCCCCC
Confidence 5432 3445443 468999999998553
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-21 Score=184.65 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=108.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 53 GFKEPTPIQKACIPAAAHQGKDI-IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l~~g~dv-lv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
|+.+|+|+|+ +||.++ +++++ ++++|||||||++|++|++..+... +.++||++|
T Consensus 1 G~~q~~~iq~-~i~~~l-~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------------------~~~~lvl~P 56 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALLR----------------------RLRTLILAP 56 (451)
T ss_dssp CCCCCSCCCC-CCGGGG-STTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------------------TCCEEEEES
T ss_pred CCCCCCCcHH-HHHHHH-hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------------------CCcEEEECC
Confidence 7889999985 799986 66665 9999999999999999999876432 458999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~ 211 (326)
|++|+.|+++.+. +..+....+.... ....+..|.++|++.+...+.+. ..+.++++||+||||+
T Consensus 57 tr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~ 121 (451)
T 2jlq_A 57 TRVVAAEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHF 121 (451)
T ss_dssp SHHHHHHHHHHTT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTC
T ss_pred CHHHHHHHHHHhc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCcc
Confidence 9999999998875 3333222211110 01224578899999998777543 5578999999999997
Q ss_pred hhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 212 l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+ +..+...+..+..... .+.+|+++||||++.
T Consensus 122 ~-~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 122 T-DPCSVAARGYISTRVE-----------------------MGEAAAIFMTATPPG 153 (451)
T ss_dssp C-SHHHHHHHHHHHHHHH-----------------------TTSCEEEEECSSCTT
T ss_pred C-CcchHHHHHHHHHhhc-----------------------CCCceEEEEccCCCc
Confidence 7 3333333333322211 046899999999974
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-21 Score=191.09 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=117.7
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 020452 39 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 118 (326)
Q Consensus 39 l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 118 (326)
+++++.+++++... ...++|+|+.+++.+ .+|+|+++++|||||||++|++|+++.+...
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l-~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------------ 214 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALKR------------------ 214 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGG-STTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHH-hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------------
Confidence 66777776666554 478999998888877 5899999999999999999999999987532
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 119 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 119 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
++++||++||++|+.|+++.++. ..+. ..+.... .....+..+.+.|.+.+...+... ..+
T Consensus 215 ----~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l 275 (618)
T 2whx_A 215 ----RLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRV 275 (618)
T ss_dssp ----TCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSC
T ss_pred ----CCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc----ccc
Confidence 45899999999999999988762 2333 2221100 000112346667777776555432 457
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.++++||+||||++ +.++...+..++..++. ..+|+++||||++..
T Consensus 276 ~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-----------------------~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 276 PNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-----------------------GEAAAIFMTATPPGS 321 (618)
T ss_dssp CCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-----------------------TSCEEEEECSSCTTC
T ss_pred cCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-----------------------cCccEEEEECCCchh
Confidence 88999999999998 56677777777776641 468999999999855
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-20 Score=183.51 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 137 (326)
.++|..+++.+ .++++++++||||||||.+|.+++++. +.++||++|||+||.
T Consensus 219 ~~~q~~i~~~L-~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------------------g~~vLVl~PTReLA~ 271 (666)
T 3o8b_A 219 FTDNSSPPAVP-QSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------------------GYKVLVLNPSVAATL 271 (666)
T ss_dssp CCCCCSCCCCC-SSCEEEEEECCTTSCTTTHHHHHHHHT--------------------------TCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHH-HcCCeEEEEeCCchhHHHHHHHHHHHC--------------------------CCeEEEEcchHHHHH
Confidence 44454444444 688899999999999999999887751 348999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCC
Q 020452 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 217 (326)
Q Consensus 138 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~ 217 (326)
|+++.+.+.. +..+...+|+.. ...+++|+|+||++| +.+. ...++++++||+|||| +++.++
T Consensus 272 Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~---~l~l~~l~~lVlDEAH-~l~~~~ 334 (666)
T 3o8b_A 272 GFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADG---GCSGGAYDIIICDECH-STDSTT 334 (666)
T ss_dssp HHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTT---SCCTTSCSEEEETTTT-CCSHHH
T ss_pred HHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCC---CcccCcccEEEEccch-hcCccH
Confidence 9999877664 445666677654 345789999999997 3332 2667889999999996 456677
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 218 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 218 ~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...+..+++.++.. ....++++|||++..
T Consensus 335 ~~~l~~Il~~l~~~----------------------~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 335 ILGIGTVLDQAETA----------------------GARLVVLATATPPGS 363 (666)
T ss_dssp HHHHHHHHHHTTTT----------------------TCSEEEEEESSCTTC
T ss_pred HHHHHHHHHhhhhc----------------------CCceEEEECCCCCcc
Confidence 88889999988721 223478889999864
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-18 Score=164.72 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=94.2
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 020452 66 PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145 (326)
Q Consensus 66 ~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 145 (326)
+.++.+++++++++|||||||++|++|+++.+... ++++||++||++|+.|+++.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------------------~~~~lvl~Ptr~La~Q~~~~l~- 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------------------RLRTAVLAPTRVVAAEMAEALR- 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEECSHHHHHHHHHHTT-
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------------------CCcEEEECchHHHHHHHHHHhc-
Confidence 44457889999999999999999999999887532 4589999999999999999886
Q ss_pred HHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhH-----hhhCCCHHH
Q 020452 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-----MIENGHFRE 220 (326)
Q Consensus 146 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~-----l~~~~~~~~ 220 (326)
+..+....+..... -..+..+.+.|.+.+...+... ..++++++||+||||+ ++..++...
T Consensus 72 -----g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~ 137 (459)
T 2z83_A 72 -----GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIAT 137 (459)
T ss_dssp -----TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHH
T ss_pred -----CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHH
Confidence 23332222211110 1223457778888877665443 4578999999999998 343333222
Q ss_pred HHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 221 i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
+ . . + ...|+++||||++..
T Consensus 138 ~---~-~-~------------------------~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 138 K---V-E-L------------------------GEAAAIFMTATPPGT 156 (459)
T ss_dssp H---H-H-T------------------------TSCEEEEECSSCTTC
T ss_pred H---h-c-c------------------------CCccEEEEEcCCCcc
Confidence 1 1 1 1 468999999999854
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-18 Score=168.70 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAAH----QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~----~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|+++|.++++.++. .++++++++|||+|||++++. ++..+...... ......+.++|||+|
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~-------------~~~~~~~~~vlil~P 243 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWN-------------RTGDYRKPRILFLAD 243 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCC-------------SSCSSSCCCEEEEEC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccc-------------cccccCCCeEEEEeC
Confidence 799999999998753 346799999999999999754 44444332100 001124569999999
Q ss_pred cHHHHHHHH-HHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-cccccCCCeeEEeecch
Q 020452 132 TRELALQVT-DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEA 209 (326)
Q Consensus 132 t~~L~~Q~~-~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-~~~~~l~~l~~lViDEa 209 (326)
+++|+.|++ +.++.+ +..+..+.++. ...+.+|+|+||++|........ ........+++||+|||
T Consensus 244 ~~~L~~Q~~~~~~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEa 311 (590)
T 3h1t_A 244 RNVLVDDPKDKTFTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDEC 311 (590)
T ss_dssp -----------CCTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCC
T ss_pred CHHHHHHHHHHHHHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECC
Confidence 999999998 666655 33444443321 23468999999999987664221 11234567899999999
Q ss_pred hHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 210 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 210 h~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
|++...+ ...+..++..++ ..++++||||....
T Consensus 312 H~~~~~~-~~~~~~il~~~~-------------------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 312 HRGSARD-NSNWREILEYFE-------------------------PAFQIGMTATPLRE 344 (590)
T ss_dssp C----------CHHHHHHST-------------------------TSEEEEEESSCSCT
T ss_pred ccccccc-hHHHHHHHHhCC-------------------------cceEEEeccccccc
Confidence 9997542 345566777775 36899999997643
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-20 Score=185.70 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=102.4
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHH-----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 48 SIYRLGFK-----EPTPIQK-----ACIPAAA-----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 48 ~l~~~g~~-----~p~~~Q~-----~~i~~~l-----~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
++..+||. .|+++|+ ++||.++ .+++|+++++|||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 55667777 8999999 9998763 2799999999999999999999999876432
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
+.++||++||++||.|+++.++.+ ++. ...+. . . .++||+++++++..+.
T Consensus 270 ----------~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~--l-------~-----~v~tp~~ll~~l~~~~ 319 (673)
T 2wv9_A 270 ----------RLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPA--V-------Q-----REHSGNEIVDVMCHAT 319 (673)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC-----------------CCCCSCCCEEEEEHHH
T ss_pred ----------CCcEEEEccHHHHHHHHHHHHhcC----Cee--eeccc--c-------c-----ccCCHHHHHHHHHhhh
Confidence 458999999999999999888754 332 11110 0 0 1455554433222110
Q ss_pred -----cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 193 -----KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 193 -----~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.....++++++||+||+|++ +..+...+..+...++. ..+|+++||||++.
T Consensus 320 l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-----------------------~~~~vl~~SAT~~~ 375 (673)
T 2wv9_A 320 LTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-----------------------GEAAAIFMTATPPG 375 (673)
T ss_dssp HHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-----------------------TSCEEEEECSSCTT
T ss_pred hHHHHhcccccccceEEEEeCCccc-CccHHHHHHHHHHhccc-----------------------cCCcEEEEcCCCCh
Confidence 00135789999999999998 22222333333333321 45899999999974
Q ss_pred c
Q 020452 268 S 268 (326)
Q Consensus 268 ~ 268 (326)
.
T Consensus 376 ~ 376 (673)
T 2wv9_A 376 T 376 (673)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-19 Score=169.26 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=91.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC
Q 020452 70 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 149 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 149 (326)
.+|+|+++++|||||||++|++|+++.+... +++++|++||++|+.|+++.++.+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------------------~~~~lil~Ptr~La~Q~~~~l~~~--- 60 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR----------------------RLRTLVLAPTRVVLSEMKEAFHGL--- 60 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTTTS---
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------------------CCeEEEEcchHHHHHHHHHHHhcC---
Confidence 5899999999999999999999999876432 458999999999999999988743
Q ss_pred CCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC-----cccccCCCeeEEeecchhHhhhCCCHHHHHHH
Q 020452 150 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLDEADRMIENGHFRELQSI 224 (326)
Q Consensus 150 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~-----~~~~~l~~l~~lViDEah~l~~~~~~~~i~~i 224 (326)
+ +....+.. -.|+||+++.+++..+. .....+++++++|+||+|++ +.++...+..+
T Consensus 61 -~--v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~ 122 (440)
T 1yks_A 61 -D--VKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWA 122 (440)
T ss_dssp -C--EEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHH
T ss_pred -C--eEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHH
Confidence 2 22211110 03788877654443211 11134789999999999998 33333333333
Q ss_pred HHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 225 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...++. .++|+++||||++..
T Consensus 123 ~~~~~~-----------------------~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 123 AHRARA-----------------------NESATILMTATPPGT 143 (440)
T ss_dssp HHHHHT-----------------------TSCEEEEECSSCTTC
T ss_pred HHHhcc-----------------------CCceEEEEeCCCCch
Confidence 332221 468999999999744
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-18 Score=174.86 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=114.8
Q ss_pred CChHHHHHHHHHHHhc-------------CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 56 EPTPIQKACIPAAAHQ-------------GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-------------g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.|+|+|.+|++.++.. +++.+++++||||||+++ ++++..+.. ...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--------------------~~~ 329 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--------------------LDF 329 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--------------------CTT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--------------------cCC
Confidence 5999999999998641 468999999999999997 556544311 122
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh-cCCCEEEeCcHHHHHHHhcCCcccccCCCe
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTL 201 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l 201 (326)
..++|||+|+++|+.|+.+.+..+... .+.++.+.......+. .+++|+|+||++|..++.... ....+...
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~~~~~~ 402 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLPVYNQQ 402 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCGGGGSC
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chhccccc
Confidence 358999999999999999999887542 1234444444444453 468999999999998876432 11234567
Q ss_pred eEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 202 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 202 ~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.+||+||||++.. +.....++..++ ..++++||||....
T Consensus 403 ~lvIiDEAHrs~~---~~~~~~I~~~~p-------------------------~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 403 VVFIFDECHRSQF---GEAQKNLKKKFK-------------------------RYYQFGFTGTPIFP 441 (1038)
T ss_dssp EEEEEESCCTTHH---HHHHHHHHHHCS-------------------------SEEEEEEESSCCCS
T ss_pred cEEEEEccchhcc---hHHHHHHHHhCC-------------------------cccEEEEeCCcccc
Confidence 8999999999874 234556666665 47999999999743
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-18 Score=159.16 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=94.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|+++++++|||||||++|++|+++.+... +.+++|++||++|+.|+++.+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------------------g~~~lvl~Pt~~La~Q~~~~~~------ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK----------------------RLRTVILAPTRVVASEMYEALR------ 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------------------CCCEEEECcHHHHHHHHHHHhC------
Confidence 378999999999999999999999766432 4589999999999999988775
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhC-C
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML-P 229 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l-~ 229 (326)
++.+....|+... .-..+.-+.+.|.+.+...+... ..+.+++++|+||+|++ +.++......+.... +
T Consensus 53 ~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~ 122 (431)
T 2v6i_A 53 GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM 122 (431)
T ss_dssp TSCEEEC--------------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC
Confidence 4455555544221 11123456677888876655432 45888999999999997 333333334443332 2
Q ss_pred CCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 230 MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+|+++||||++..
T Consensus 123 ------------------------~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 123 ------------------------GDAGAIFMTATPPGT 137 (431)
T ss_dssp ------------------------TSCEEEEEESSCTTC
T ss_pred ------------------------CCCcEEEEeCCCCcc
Confidence 568999999999854
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=156.18 Aligned_cols=133 Identities=17% Similarity=0.037 Sum_probs=102.1
Q ss_pred CCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 020452 53 GFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 129 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 129 (326)
|| .|+|+|.+++..+ +..|+++++.||||+|||++|++|++.. +.+++|+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------------------~~~v~i~ 53 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------------------KPKVLFV 53 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------------------CSEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------------------CCeEEEE
Confidence 45 7899999977653 3579999999999999999999999871 3489999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCC---------------------------------HHHHH---------
Q 020452 130 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMS---------------------------------TEKQE--------- 167 (326)
Q Consensus 130 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~---------------------------------~~~~~--------- 167 (326)
+||++|+.|+.+.+..+.+..++++..+.|..+ .+...
T Consensus 54 ~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~ 133 (551)
T 3crv_A 54 VRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQ 133 (551)
T ss_dssp ESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCc
Confidence 999999999999998887766788887776321 11111
Q ss_pred ---------HHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 168 ---------RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 168 ---------~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.....++|||+|+..|++...+.. ........++||||||.+.+
T Consensus 134 ~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 134 DKFCPYYSLLNSLYKADVIALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG
T ss_pred CCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH
Confidence 2233478999999999988654332 11124667899999999987
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-17 Score=164.11 Aligned_cols=138 Identities=17% Similarity=0.091 Sum_probs=101.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
+|++++++||||||||. +++..+... .+++|++|||+||.|+++.+...
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~-----------------------~~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA-----------------------KSGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS-----------------------SSEEEEESSHHHHHHHHHHHHHT----
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc-----------------------CCeEEEeCHHHHHHHHHHHHHhc----
Confidence 78999999999999997 344444321 14599999999999999998876
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
++++..++|+...... ......+++++|++.+ .....++++|+||+|++++.+++..+..++..++.
T Consensus 203 g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 203 GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred CCcEEEEECCeeEEec--CCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 7788888887543000 0001245666666543 22466899999999999999999999999888862
Q ss_pred CCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHh
Q 020452 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275 (326)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 275 (326)
...|++++|||.+....+..+.
T Consensus 270 -----------------------~~i~il~~SAT~~~i~~l~~~~ 291 (677)
T 3rc3_A 270 -----------------------EEVHLCGEPAAIDLVMELMYTT 291 (677)
T ss_dssp -----------------------EEEEEEECGGGHHHHHHHHHHH
T ss_pred -----------------------cceEEEeccchHHHHHHHHHhc
Confidence 4689999999976555555544
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=148.96 Aligned_cols=132 Identities=20% Similarity=0.161 Sum_probs=86.8
Q ss_pred HCCCCCChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 020452 51 RLGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127 (326)
Q Consensus 51 ~~g~~~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (326)
-.|| .|+|+|.+++..+ +.+|+++++.+|||+|||++|++|++.. +.+++
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------------------~~~~~ 55 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------------------KKKVL 55 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------------------TCEEE
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------------------CCcEE
Confidence 3577 8999999987543 3578999999999999999999998642 34899
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCH--------H-----------------------------------
Q 020452 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST--------E----------------------------------- 164 (326)
Q Consensus 128 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~--------~----------------------------------- 164 (326)
|++||++|+.|+.+.+..+ ++++..+.|.... .
T Consensus 56 ~~~~t~~l~~q~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~ 131 (540)
T 2vl7_A 56 IFTRTHSQLDSIYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVD 131 (540)
T ss_dssp EEESCHHHHHHHHHHHGGG----TCCEEEC--------------------------------------------------
T ss_pred EEcCCHHHHHHHHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcC
Confidence 9999999999999887764 4455444432210 0
Q ss_pred ----HHHHHHhcCCCEEEeCcHHHHHHHhcCCcc----cccCCCeeEEeecchhHhh
Q 020452 165 ----KQERLLKARPELVVGTPGRLWELMSGGEKH----LVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 165 ----~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~----~~~l~~l~~lViDEah~l~ 213 (326)
...+.....++|||+|+..|.+-...+... ...+....++||||||.+.
T Consensus 132 ~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 132 YCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp -------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 000011235799999999998744321100 0123567899999999994
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=145.13 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.|+|+|.++++.+. ..+++.++..+||+|||+.++..+.. +... ....++|||||
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~--------------------~~~~~~LIv~P- 94 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKE--------------------NELTPSLVICP- 94 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHT--------------------TCCSSEEEEEC-
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhc--------------------CCCCCEEEEcc-
Confidence 79999999987653 36789999999999999997554443 3211 12347999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
.+|+.|+.+.+++++. +.++..++|+... ......+|+|+|++.+..... .....+++||+||||++
T Consensus 95 ~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 95 LSVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp STTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCcccc
Confidence 5699999999999865 4566666665421 112357999999999854332 23456899999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 213 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 213 ~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+... .....+..++ ..+.+++|||..
T Consensus 162 kn~~~--~~~~~l~~l~-------------------------~~~~l~LTaTP~ 188 (500)
T 1z63_A 162 KNPQT--KIFKAVKELK-------------------------SKYRIALTGTPI 188 (500)
T ss_dssp SCTTS--HHHHHHHTSC-------------------------EEEEEEECSSCS
T ss_pred CCHhH--HHHHHHHhhc-------------------------cCcEEEEecCCC
Confidence 75432 3344455553 357899999984
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=149.64 Aligned_cols=134 Identities=22% Similarity=0.188 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.|+|+|.+++..++.. +.+++++++||+|||+.++..+...+.. +...++|||||+ .
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------g~~~rvLIVvP~-s 210 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------------------GAAERVLIIVPE-T 210 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------SSCCCEEEECCT-T
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------------CCCCeEEEEeCH-H
Confidence 7899999999887643 4588999999999999997776665422 123379999999 9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH--HHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER--LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~--~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
|+.|+.+.+.+.+ ++++..+.|+........ ......+|+|+|++.+...... .......++++||+||||++
T Consensus 211 Ll~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~--~~~l~~~~~dlVIvDEAH~~ 285 (968)
T 3dmq_A 211 LQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR--LEHLCEAEWDLLVVDEAHHL 285 (968)
T ss_dssp THHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--THHHHTSCCCEEEECCSSCC
T ss_pred HHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH--HHHhhhcCCCEEEehhhHhh
Confidence 9999999987664 566666655432211100 0112568999999887532111 11233567899999999999
Q ss_pred hhCC
Q 020452 213 IENG 216 (326)
Q Consensus 213 ~~~~ 216 (326)
...+
T Consensus 286 kn~~ 289 (968)
T 3dmq_A 286 VWSE 289 (968)
T ss_dssp CCBT
T ss_pred cCCC
Confidence 7443
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-13 Score=132.47 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=108.3
Q ss_pred CChHHHHHHHHHHH--------hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 020452 56 EPTPIQKACIPAAA--------HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l--------~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (326)
.++|+|.+++..+. ..+...|+..+||+|||+.++..+...+... ........++|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------~~~~p~~~~~L 118 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------PDCKPEIDKVI 118 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC----------------TTSSCSCSCEE
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC----------------ccccCCCCcEE
Confidence 68999999998764 2456789999999999999877665543211 00111234699
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHH--HHHhc------CCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE--RLLKA------RPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 128 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~--~~~~~------~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
||+|+ +|+.|+.+.+.+++.. .+.+..++++....... ..... ..+|+|+|++.+...... ....
T Consensus 119 iV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----l~~~ 191 (644)
T 1z3i_X 119 VVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKG 191 (644)
T ss_dssp EEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTS
T ss_pred EEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-----hhcC
Confidence 99997 8999999999999765 45666666664332211 11111 478999999998654421 2234
Q ss_pred CeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 200 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 200 ~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.+++||+||||++-+.. ......+..++ ....+++|||.-
T Consensus 192 ~~~~vI~DEaH~ikn~~--~~~~~al~~l~-------------------------~~~rl~LTgTPi 231 (644)
T 1z3i_X 192 KVGLVICDEGHRLKNSD--NQTYLALNSMN-------------------------AQRRVLISGTPI 231 (644)
T ss_dssp CCCEEEETTGGGCCTTC--HHHHHHHHHHC-------------------------CSEEEEECSSCS
T ss_pred CccEEEEECceecCChh--hHHHHHHHhcc-------------------------cCcEEEEecCcc
Confidence 67899999999986432 22333344443 356799999974
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=132.06 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~---l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.|+|.|.+.+..+ +.+|+++++.||||+|||++|++|++..+... +.+++|++||
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------------------~~kvli~t~T 60 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------------------KLKVLYLVRT 60 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------------------TCEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------------------CCeEEEECCC
Confidence 6899999998643 35899999999999999999999999987432 3489999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcC
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGG 160 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~ 160 (326)
++|+.|+.+.+..+....++++..+.|+
T Consensus 61 ~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 61 NSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 9999999999999877666776665543
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-13 Score=133.99 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.++|+|.+++..++ ..+++.|+..++|.|||+.++..+...+... .....+|||||
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--------------------~~~~~~LIV~P- 294 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--------------------RQNGPHIIVVP- 294 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------SCCSCEEEECC-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------CCCCCEEEEEC-
Confidence 68999999997542 4788999999999999999876665544322 11336899999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH------------hcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------------KARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~------------~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
.+|+.|+.+.+.+++. ++++...+|+.......... ....+|+|+|++.+...... ..-..
T Consensus 295 ~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~ 367 (800)
T 3mwy_W 295 LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIK 367 (800)
T ss_dssp TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSE
T ss_pred chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCC
Confidence 7789999999999864 46777777765544333221 13578999999998654321 22335
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
+++||+||||++-+.. ......+..++ ....+++|||.-
T Consensus 368 w~~vIvDEaH~lkn~~--s~~~~~l~~l~-------------------------~~~rl~LTgTPi 406 (800)
T 3mwy_W 368 WQFMAVDEAHRLKNAE--SSLYESLNSFK-------------------------VANRMLITGTPL 406 (800)
T ss_dssp EEEEEETTGGGGCCSS--SHHHHHHTTSE-------------------------EEEEEEECSCCC
T ss_pred cceeehhhhhhhcCch--hHHHHHHHHhh-------------------------hccEEEeeCCcC
Confidence 8899999999985432 23444444443 356788999983
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=112.45 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=102.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. .|+++|....-.+ ..|+ |..+.||+|||+++.+|++-..+. |..+.|++|
T Consensus 72 lg~-r~~dvQligg~~L-~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------------------G~~vhVvT~ 124 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIAL-HEGK--VAEMKTGEGKTLAATMPIYLNALI-----------------------GKGVHLVTV 124 (822)
T ss_dssp TSC-CCCHHHHHHHHHH-HTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------------------SSCEEEEES
T ss_pred hCC-CCcHHHHHHHHHH-hCCC--hhhccCCCCccHHHHHHHHHHHhc-----------------------CCceEEEec
Confidence 787 8999999998766 5777 899999999999999999865432 447999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcC--------------------------------------------------C
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGG--------------------------------------------------M 161 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~--------------------------------------------------~ 161 (326)
+..||.|-++++..+...+|++|++++.. .
T Consensus 125 ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 204 (822)
T 3jux_A 125 NDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVEL 204 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEEC
T ss_pred cHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccC
Confidence 99999999999999999999999999872 1
Q ss_pred CHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCC---cccccCCCeeEEeecchhHhh
Q 020452 162 STEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 162 ~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~---~~~~~l~~l~~lViDEah~l~ 213 (326)
+........ .|||..||..-| .++|+.+. ........+.+.|+||+|.++
T Consensus 205 ~~~err~aY--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 205 KEITRKEAY--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp CBCCHHHHH--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CHHHHHHHh--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 212222222 489999999776 56665431 111224668999999999876
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=108.22 Aligned_cols=134 Identities=21% Similarity=0.275 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHH--HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKT--LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT--~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
++.|+.+++.++ .++.+++.|++||||| .+++++.+..+. ...+.++++++||..+
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~---------------------~~~~~~vll~APTg~A 208 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMA---------------------DGERCRIRLAAPTGKA 208 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTC---------------------SSCCCCEEEEBSSHHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh---------------------hcCCCeEEEEeCChhH
Confidence 789999999986 7899999999999999 445566554320 1224589999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEE-eCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV-GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV-~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
+.++.+.+......+++...... .... . ....|-++ .+|+.. . +.... .....+++||||||+ |++
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~~-~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml~ 275 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQKK-RIPE--D----ASTLHRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MID 275 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCCC-SCSC--C----CBTTTSCC-------------CT---TSCCSCSEEEECSGG-GCB
T ss_pred HHHHHHHHHHHHhcCCCCHHHHh-ccch--h----hhhhHhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hCC
Confidence 99999888776654443211000 0000 0 00111112 223221 1 11111 112368999999999 554
Q ss_pred CCCHHHHHHHHHhCC
Q 020452 215 NGHFRELQSIIDMLP 229 (326)
Q Consensus 215 ~~~~~~i~~il~~l~ 229 (326)
...+..++..++
T Consensus 276 ---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 276 ---LPMMSRLIDALP 287 (608)
T ss_dssp ---HHHHHHHHHTCC
T ss_pred ---HHHHHHHHHhCC
Confidence 567788888887
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=85.53 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+|+..++.+..-.+|+||+|||||.+..-.+.+.+ .. +.++|+++||..-
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~----------------------~~~ILv~a~TN~A 245 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-KQ----------------------GLKVLCCAPSNIA 245 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-HT----------------------TCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-hC----------------------CCeEEEEcCchHH
Confidence 578999999998864334568999999999988654444333 21 3489999999999
Q ss_pred HHHHHHHHHHH
Q 020452 136 ALQVTDHLKEV 146 (326)
Q Consensus 136 ~~Q~~~~l~~~ 146 (326)
+.++.+.+...
T Consensus 246 vD~i~erL~~~ 256 (646)
T 4b3f_X 246 VDNLVERLALC 256 (646)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99998887654
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.7e-06 Score=78.71 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 020452 47 KSIYRLGFKEPTPIQKACIPAAAHQ----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 122 (326)
Q Consensus 47 ~~l~~~g~~~p~~~Q~~~i~~~l~~----g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (326)
.....+.|..+++-|++++..++.. ...+++.|+.|||||.+. ..++..+... +
T Consensus 16 ~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---------------------~ 73 (459)
T 3upu_A 16 PRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---------------------G 73 (459)
T ss_dssp -----CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---------------------T
T ss_pred cccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---------------------C
Confidence 3455578889999999999876432 348999999999999654 3444444322 1
Q ss_pred CeEEEEEeCcHHHHHHHHHHH
Q 020452 123 HLRALIITPTRELALQVTDHL 143 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l 143 (326)
...+++++||...+..+.+.+
T Consensus 74 ~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 74 ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCEEEEESSHHHHHHHHHHH
T ss_pred CceEEEecCcHHHHHHHHhhh
Confidence 136899999998887665544
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=80.57 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++.|.+|+..++ .+.-+++.||+|||||.+..- ++..+.... +.++++++||..
T Consensus 359 ~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~-~i~~l~~~~---------------------~~~ILv~a~tn~ 415 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLSKIH---------------------KDRILVCAPSNV 415 (802)
T ss_dssp CCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHH-HHHHHHHHH---------------------CCCEEEEESSHH
T ss_pred ccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHH-HHHHHHhCC---------------------CCeEEEEcCcHH
Confidence 357899999999885 566789999999999987543 334343321 338999999999
Q ss_pred HHHHHHHHHHHH
Q 020452 135 LALQVTDHLKEV 146 (326)
Q Consensus 135 L~~Q~~~~l~~~ 146 (326)
.+.++.+.+...
T Consensus 416 A~d~l~~rL~~~ 427 (802)
T 2xzl_A 416 AVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-06 Score=81.10 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++.|..++..++ .+.-+++.||+|||||.+..- ++..+.. ..+.++++++||..
T Consensus 179 ~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~-~i~~l~~---------------------~~~~~ilv~a~tn~ 235 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR---------------------QGNGPVLVCAPSNI 235 (624)
T ss_dssp CCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHH-HHHHHHT---------------------SSSCCEEEEESSHH
T ss_pred CCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHH-HHHHHHH---------------------cCCCeEEEEeCcHH
Confidence 357899999998886 566789999999999987543 3333321 12448999999999
Q ss_pred HHHHHHHHHHHH
Q 020452 135 LALQVTDHLKEV 146 (326)
Q Consensus 135 L~~Q~~~~l~~~ 146 (326)
.+.++.+.+...
T Consensus 236 A~~~l~~~l~~~ 247 (624)
T 2gk6_A 236 AVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999998887654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=78.99 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++.|..++..++ .++.+++.|+.|||||.+. ..++..+.. .+.++++++||...
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----------------------~g~~Vl~~ApT~~A 244 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTT-KAVADLAES----------------------LGLEVGLCAPTGKA 244 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHH-HHHHHHHHh----------------------cCCeEEEecCcHHH
Confidence 68999999999885 7788999999999999764 334433321 13479999999998
Q ss_pred HHHHHHH
Q 020452 136 ALQVTDH 142 (326)
Q Consensus 136 ~~Q~~~~ 142 (326)
+..+.+.
T Consensus 245 a~~L~e~ 251 (574)
T 3e1s_A 245 ARRLGEV 251 (574)
T ss_dssp HHHHHHH
T ss_pred HHHhHhh
Confidence 8776654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.4e-05 Score=79.21 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++.|.+++..++ .+.-.++.||+|||||.+.. .++..+... .+.++++++||...
T Consensus 356 ~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---------------------~~~~ilv~a~tn~A 412 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------------------GNGPVLVCAPSNIA 412 (800)
T ss_dssp CCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHH-HHHHHHHTT---------------------CSSCEEEEESSHHH
T ss_pred CCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---------------------CCCcEEEEcCcHHH
Confidence 56899999999885 56678999999999998753 334433211 24489999999999
Q ss_pred HHHHHHHHHHH
Q 020452 136 ALQVTDHLKEV 146 (326)
Q Consensus 136 ~~Q~~~~l~~~ 146 (326)
+.++.+.+...
T Consensus 413 ~~~l~~~l~~~ 423 (800)
T 2wjy_A 413 VDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99988887654
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00066 Score=67.39 Aligned_cols=69 Identities=26% Similarity=0.405 Sum_probs=53.0
Q ss_pred CCCCChHHHHHHHHHHH---hcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 020452 53 GFKEPTPIQKACIPAAA---HQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 128 (326)
Q Consensus 53 g~~~p~~~Q~~~i~~~l---~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 128 (326)
+| .|++.|..++..+. ..|. ..++.+.||||||+++.- ++... +..+||
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~-------------------------~~~~lv 58 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL-------------------------GRPALV 58 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------------------TCCEEE
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------------------CCCEEE
Confidence 56 89999999987653 2343 567889999999987643 22322 114899
Q ss_pred EeCcHHHHHHHHHHHHHHHc
Q 020452 129 ITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 129 l~Pt~~L~~Q~~~~l~~~~~ 148 (326)
|+|+..+|.|+++.++.++.
T Consensus 59 v~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 59 LAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EESSHHHHHHHHHHHHHHCT
T ss_pred EecCHHHHHHHHHHHHHHCC
Confidence 99999999999999999965
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=64.95 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|.+++. ..+..++|.|+.|||||.+.+--+...+... ...+-+++++++|+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-------------------~~~~~~iL~ltft~~ 65 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE-------------------NCSPYSIMAVTFTNK 65 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS-------------------CCCGGGEEEEESSHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC-------------------CCChhhEEEEeccHH
Confidence 368999999995 2467899999999999988655554443211 012237999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.+.++.+.+..+..
T Consensus 66 aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 66 AAAEMRHRIGQLMG 79 (647)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0036 Score=57.76 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.++|+|...+..+ ...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++.
T Consensus 163 ~L~p~Qk~il~~l-~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------------------~~g~~v~~vA~t~~q 220 (385)
T 2o0j_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (385)
T ss_dssp CCCHHHHHHHHHH-HHSSEEEEEECSSSCHHHHHHHHHHHHHHS---------------------SSSCEEEEEESSHHH
T ss_pred CCCHHHHHHHHhh-ccCcEEEEEEcCcCChhHHHHHHHHHHHHh---------------------CCCCeEEEEeCCHHH
Confidence 7899999999876 345668899999999999876655543321 124589999999999
Q ss_pred HHHHHHHHHHHHcC
Q 020452 136 ALQVTDHLKEVAKG 149 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~ 149 (326)
|..+.+.++.+...
T Consensus 221 A~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 221 SAEVLDRTKQAIEL 234 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99988888877654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0039 Score=50.75 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.|+.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999996653
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0033 Score=62.40 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.... ....++++++.|+..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------------------~~~~~IL~lTfT~~A 59 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------------------YQARHIAAVTFTNKA 59 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------------------CCGGGEEEEESSHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------------------CCHHHeEEEeccHHH
Confidence 478999999853 4688999999999999887655555443210 112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
+.++.+.+.....
T Consensus 60 a~em~~Rl~~~l~ 72 (673)
T 1uaa_A 60 AREMKERVGQTLG 72 (673)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988754
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.018 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
.+.++++.||+|+|||.+.-. ++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 346899999999999977533 44443
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0077 Score=60.33 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 55 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 55 ~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+... .....++|+++.|+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-------------------~~~p~~IL~vTFTnk 67 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-------------------HVAPWNILAITFTNK 67 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-------------------CCCGGGEEEEESSHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc-------------------CCCHHHeEEEeccHH
Confidence 3689999999853 467899999999999988765555544211 012337999999999
Q ss_pred HHHHHHHHHHHHHc
Q 020452 135 LALQVTDHLKEVAK 148 (326)
Q Consensus 135 L~~Q~~~~l~~~~~ 148 (326)
.|.++.+++..+..
T Consensus 68 AA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 68 AAREMRERVQSLLG 81 (724)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=58.52 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHH---hcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAA---HQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|+..|..++..+. ..|. ...+.+.||||||++..- ++... +..+|||+|
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~-------------------------~~~~lvv~~ 65 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV-------------------------NKPTLVIAH 65 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------------------CCCEEEECS
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh-------------------------CCCEEEEEC
Confidence 78999988887653 2343 567889999999977643 22221 114899999
Q ss_pred cHHHHHHHHHHHHHHHc
Q 020452 132 TRELALQVTDHLKEVAK 148 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~ 148 (326)
+..+|.|+++.++.++.
T Consensus 66 ~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 66 NKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp SHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999999965
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.007 Score=56.72 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=51.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
=.++.|+.|+|||....- .+. ..+.+|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~----~~~------------------------~~~~lVlTpT~~aa~~l~~kl~~~----~~~ 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS----RVN------------------------FEEDLILVPGRQAAEMIRRRANAS----GII 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH----HCC------------------------TTTCEEEESCHHHHHHHHHHHTTT----SCC
T ss_pred EEEEEcCCCCCHHHHHHH----Hhc------------------------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc
Confidence 357899999999976422 110 014699999999998887776432 110
Q ss_pred EEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
.....-|.|-++++ ++... ......++|||||+- |++.
T Consensus 211 ------------------~~~~~~V~T~dsfL--~~~~~---~~~~~~d~liiDE~s-m~~~ 248 (446)
T 3vkw_A 211 ------------------VATKDNVRTVDSFL--MNYGK---GARCQFKRLFIDEGL-MLHT 248 (446)
T ss_dssp ------------------CCCTTTEEEHHHHH--HTTTS---SCCCCCSEEEEETGG-GSCH
T ss_pred ------------------ccccceEEEeHHhh--cCCCC---CCCCcCCEEEEeCcc-cCCH
Confidence 01123356766653 22211 112247899999997 4443
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=61.77 Aligned_cols=72 Identities=29% Similarity=0.319 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+|+-|.++|. ..+++++|.|..|||||.+.+--++..+.... .....-+++++++|++.
T Consensus 10 ~~t~eQ~~~i~---~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-----------------~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 10 TWTDDQWNAIV---STGQDILVAAAAGSGKTAVLVERMIRKITAEE-----------------NPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp CCCHHHHHHHH---CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSS-----------------SCCCGGGEEEECSSHHH
T ss_pred CCCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----------------CCCCccceEEEeccHHH
Confidence 68999999984 35789999999999999887666666553210 00122379999999999
Q ss_pred HHHHHHHHHHHH
Q 020452 136 ALQVTDHLKEVA 147 (326)
Q Consensus 136 ~~Q~~~~l~~~~ 147 (326)
+.++.+.+...+
T Consensus 70 a~e~~~ri~~~l 81 (1232)
T 3u4q_A 70 AAEMKHRIAEAL 81 (1232)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.021 Score=51.08 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999665
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.14 Score=44.31 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999997653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.054 Score=49.09 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4568999999999999765
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.013 Score=49.88 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=50.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
.|.=+++.|++|+|||.+.+-.+ .++.. .+.+++++.|...- . . ...+....
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~----------------------~g~kVli~~~~~d~--r-~--~~~i~srl 62 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEY----------------------ADVKYLVFKPKIDT--R-S--IRNIQSRT 62 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHH----------------------TTCCEEEEEECCCG--G-G--CSSCCCCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHh----------------------cCCEEEEEEeccCc--h-H--HHHHHHhc
Confidence 45566788999999997654333 33211 14478888776531 0 0 00112222
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
|+.. ..+-+.+...+++.+... ..-...++|||||++.+
T Consensus 63 G~~~-------------------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 63 GTSL-------------------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp CCSS-------------------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred CCCc-------------------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccC
Confidence 2211 123456667777777542 11234789999999865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0049 Score=48.89 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|..+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.025 Score=46.78 Aligned_cols=21 Identities=19% Similarity=-0.016 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|+=.++.+|.|+|||...+-
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHH
Confidence 345567799999999966543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.038 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|+=.++.||.|+|||...+-
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHH
Confidence 355578899999999977543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.16 Score=41.66 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.++++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999654
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.081 Score=47.07 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
...+++++||+|.+........+..+++..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~ 133 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAY 133 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhC
Confidence 357899999999886122344455555443
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.14 Score=46.49 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999765
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.3 Score=40.51 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999664
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.14 Score=42.09 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=54.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.........+ .....|+|+|. .+..+ .++.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G----ldi~ 121 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKG----LDFP 121 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcC----CCcc
Confidence 37999999999999999888776 78899999998876654433 34689999992 33444 6677
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.=+
T Consensus 122 ~v~~VI~~d 130 (191)
T 2p6n_A 122 AIQHVINYD 130 (191)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888887643
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.09 Score=41.86 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=55.1
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+..+ .++.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~~ 102 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDIE 102 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cchh
Confidence 37999999999999999888775 78899999998876654433 24678999993 33333 6677
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
+++++|.-+.
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888886443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.082 Score=49.57 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+..+++.||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3589999999999997653
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.068 Score=52.60 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=64.6
Q ss_pred CChHHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 56 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~-g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
.+|.-|.+++..++.. ..-.++.|+-|.|||.+.-+.+ ..+. .+++|.+|+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~-------------------------~~~~vtAP~~~ 228 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA-------------------------GRAIVTAPAKA 228 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS-------------------------SCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH-------------------------hCcEEECCCHH
Confidence 6799999999887531 2346889999999996554433 3321 14699999998
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhh
Q 020452 135 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214 (326)
Q Consensus 135 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~ 214 (326)
-+..+.+...+ .|-...|..+.. ...+.++||||||=.+-
T Consensus 229 a~~~l~~~~~~-----------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp- 268 (671)
T 2zpa_A 229 STDVLAQFAGE-----------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP- 268 (671)
T ss_dssp SCHHHHHHHGG-----------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC-
T ss_pred HHHHHHHHhhC-----------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC-
Confidence 77654433211 022235655321 12347899999997553
Q ss_pred CCCHHHHHHHHH
Q 020452 215 NGHFRELQSIID 226 (326)
Q Consensus 215 ~~~~~~i~~il~ 226 (326)
...+..++.
T Consensus 269 ---~pll~~ll~ 277 (671)
T 2zpa_A 269 ---APLLHQLVS 277 (671)
T ss_dssp ---HHHHHHHHT
T ss_pred ---HHHHHHHHh
Confidence 556666664
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.94 E-value=0.21 Score=44.53 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=33.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----hcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l----~~g~dvlv~apTGsGKT~~~ 89 (326)
+-..|+++.-.+.+.+.|...=. .|.. .|.++ ...+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 33579999888888888876311 1111 11111 12357999999999999765
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.074 Score=47.83 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHH---HhcCC---cEEEEcCCCchHHHHHHH
Q 020452 57 PTPIQKACIPAA---AHQGK---DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 57 p~~~Q~~~i~~~---l~~g~---dvlv~apTGsGKT~~~~l 91 (326)
+.|+|..++..+ +.+|+ .+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 357777776554 23443 489999999999977643
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.29 Score=43.07 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||...-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997653
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.13 Score=41.04 Aligned_cols=73 Identities=16% Similarity=0.380 Sum_probs=54.6
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+..+ .++.
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~~ 97 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDVQ 97 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCcc
Confidence 47999999999999988888764 77899999998876654433 24678999993 33333 6677
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
+++++|.-+.
T Consensus 98 ~~~~Vi~~~~ 107 (165)
T 1fuk_A 98 QVSLVINYDL 107 (165)
T ss_dssp SCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888876443
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.078 Score=51.71 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=57.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+|+|...+..+ ...+.+++..+-|+|||.+....++..+.. ..+..+++++|+++.
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---------------------~~~~~i~~va~t~~q 220 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHHHT---------------------SSSCEEEEEESSHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHHHh---------------------CCCCeEEEEECCHHH
Confidence 5899999999876 456778999999999999876555544422 124489999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 020452 136 ALQVTDHLKEVAKGI 150 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~ 150 (326)
+..+.+.++.+....
T Consensus 221 A~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 221 SAEVLDRTKQAIELL 235 (592)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888887654
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.02 Score=48.23 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999765
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.1 Score=41.97 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=54.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++..+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+..+ .++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----id~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG----IDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT----TCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC----CCc
Confidence 348999999999999888877664 78899999999876654433 24678999993 23333 678
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
..++++|.-+
T Consensus 101 ~~~~~Vi~~d 110 (175)
T 2rb4_A 101 KQVTIVVNFD 110 (175)
T ss_dssp TTEEEEEESS
T ss_pred ccCCEEEEeC
Confidence 8899888533
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.27 Score=44.10 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=28.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+|+++--++.+.+.+...=+.. ....++++.||+|+|||...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHH
Confidence 5666666777777776531100 12335999999999999765
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.16 Score=42.34 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=54.2
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.+...+...+. ...+|+|+|. .+..+ .++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idi~ 98 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAARG----LDIP 98 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTCS----SSCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhcC----CCCc
Confidence 38999999999999999888776 788999999998776654432 4678999993 33333 6778
Q ss_pred CeeEEee
Q 020452 200 TLSFFVL 206 (326)
Q Consensus 200 ~l~~lVi 206 (326)
+++++|.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888774
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.41 Score=42.70 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56999999999999765
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.37 Score=42.90 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=28.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~ 89 (326)
+|+++--.+.+++.+... +.... ....++++.||+|+|||..+
T Consensus 27 ~~~~iiG~~~~~~~l~~~------------l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVF------------IAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHHHH------------HHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHHH------------HHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 677777777777666431 21211 12358999999999999765
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.39 Score=43.20 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+..+++.||+|+|||...
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999665
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.13 Score=42.48 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
|+=.++.||.|+|||.-.
T Consensus 20 g~l~fiyG~MgsGKTt~L 37 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL 37 (195)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred eEEEEEECCCCCcHHHHH
Confidence 455678999999999544
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.32 Score=40.23 Aligned_cols=27 Identities=26% Similarity=0.101 Sum_probs=22.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
....+++..++|.|||.+++-.++..+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999877777665
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.072 Score=48.39 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999765
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.33 Score=38.96 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=54.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... ++.+..++|+.........+. ....|+|+|. .+..+ .++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi~ 98 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDIE 98 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTT----CCGG
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhcC----cchh
Confidence 37999999999999998888775 788999999988766544332 4678999994 22333 6677
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
+++++|.-+.
T Consensus 99 ~~~~Vi~~d~ 108 (172)
T 1t5i_A 99 RVNIAFNYDM 108 (172)
T ss_dssp GCSEEEESSC
T ss_pred hCCEEEEECC
Confidence 7888876443
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.11 Score=43.61 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
|+=.++.++.|+|||...+-.+.... ..+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-----------------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-----------------------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-----------------------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-----------------------HCCCEEEEEEeccC
Confidence 33346788999999966544333322 12448999998764
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.35 Score=41.09 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 134 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 134 (326)
|+=.++.|+-|+|||...+-.+.... ..+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-----------------------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-----------------------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-----------------------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-----------------------HCCCeEEEEeecCC
Confidence 55557788889999966544333322 23558898888764
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.56 Score=42.18 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
.+++.||.|+|||....
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999997653
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.16 Score=41.41 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=44.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH----HhcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++.-+..+++.++.. ++.+..++|+.+....... ......|+|+|. . +..+ .++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~G----ldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----AARG----LDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----hhcC----CCc
Confidence 447999999999999988888764 7889999998775543322 234778999993 2 2332 567
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.+++++|.-
T Consensus 113 ~~~~~VI~~ 121 (185)
T 2jgn_A 113 SNVKHVINF 121 (185)
T ss_dssp CSBSEEEES
T ss_pred ccCCEEEEe
Confidence 778887763
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.24 Score=43.56 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~ 90 (326)
++++.||+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999996653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.35 Score=45.12 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.+++|+|||.....
T Consensus 99 vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp EEEECCCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999977544
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.69 E-value=0.076 Score=49.65 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=37.8
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+-.+|++++--+.+.+.|.+. .+..|.-++..-+ ...+.+++.||+|||||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~----~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI----RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC----CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeeEEECcCCCCHHHHH
Confidence 4566899999888888888763 1223333332221 23578999999999999765
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.67 Score=42.28 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=55.8
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.+++++-+..+++.+... ++.+..++|+.........+ ....+|+|+|. .+..+ .+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 3568999999999999998888764 78899999999876554433 34678999994 44444 67
Q ss_pred CCCeeEEee
Q 020452 198 LHTLSFFVL 206 (326)
Q Consensus 198 l~~l~~lVi 206 (326)
+.+++++|.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 888988875
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.22 Score=41.82 Aligned_cols=21 Identities=19% Similarity=-0.113 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.=.++.++-|+|||...+-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr 47 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIR 47 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 355568899999999965433
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=92.23 E-value=0.54 Score=44.10 Aligned_cols=21 Identities=33% Similarity=0.112 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.|++|+|||...+-
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ 222 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN 222 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788899999999965543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=92.19 E-value=1.5 Score=41.87 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=58.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.|+++.-+..+++.+..... .++.+..++|+.........+ ....+|||+|. .+..+ +++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----iDi 408 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 408 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC----CCc
Confidence 44899999999999999999988754 267888999999876654433 35788999995 34444 778
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.++++||.-..
T Consensus 409 p~v~~VI~~~~ 419 (563)
T 3i5x_A 409 PNVHEVLQIGV 419 (563)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEECC
Confidence 88888886543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.12 Score=40.33 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~ 90 (326)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 467899999999999997763
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.91 E-value=1.4 Score=39.04 Aligned_cols=23 Identities=13% Similarity=-0.148 Sum_probs=16.9
Q ss_pred HhcCC--cEEEEcCCCchHHHHHHH
Q 020452 69 AHQGK--DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 69 l~~g~--dvlv~apTGsGKT~~~~l 91 (326)
+.+++ .+++.||.|+|||.....
T Consensus 13 i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 13 IEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp HHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred HHCCCCcEEEEECCCCCCHHHHHHH
Confidence 34444 688999999999976533
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=91.57 E-value=0.62 Score=42.32 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=55.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.+... +..+..++|+.........+ ....+|+|+|. .+..+ .++.
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idip 333 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDVE 333 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCCT
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCcc
Confidence 48999999999999999888775 77888999999876654433 24678999994 34444 7788
Q ss_pred CeeEEeec
Q 020452 200 TLSFFVLD 207 (326)
Q Consensus 200 ~l~~lViD 207 (326)
++++||.-
T Consensus 334 ~~~~Vi~~ 341 (412)
T 3fht_A 334 QVSVVINF 341 (412)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEE
Confidence 89998843
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.57 E-value=1.1 Score=41.83 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 020452 74 DIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l 91 (326)
-+++.+++|+|||.+..-
T Consensus 102 vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 467899999999987644
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.12 Score=40.18 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 56789999999999999664
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.11 Score=47.94 Aligned_cols=54 Identities=24% Similarity=0.232 Sum_probs=35.6
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
|-.+|++.+=-+.+.+.|++. .+..|.-++..-+ ...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi----~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI----AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCceEEeCCCCCCHHHHH
Confidence 446899998778888888763 1122222222211 23578999999999999765
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=91.45 E-value=0.64 Score=41.95 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=56.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++.-+..+++.+... ++.+..++|+.........+. ....|+|+|. .+..+ .++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----idi 316 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDI 316 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC----BCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC----CCc
Confidence 458999999999999998888775 778899999988765544332 4678999993 33333 778
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.+++++|.-+.
T Consensus 317 ~~~~~Vi~~~~ 327 (391)
T 1xti_A 317 ERVNIAFNYDM 327 (391)
T ss_dssp TTEEEEEESSC
T ss_pred ccCCEEEEeCC
Confidence 88999987554
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=91.39 E-value=1.9 Score=42.53 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=66.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-+..+++.+... ++++..++|+.........+ ....+|+|||- .+..| +++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G----lDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT----CCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC----ccc
Confidence 448999999999999888888775 78888899988766654443 24689999994 33444 778
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++++|+-+++...-..-...+.....+..
T Consensus 512 p~v~lVi~~d~d~~G~p~s~~~~iQr~GRag 542 (661)
T 2d7d_A 512 PEVSLVAILDADKEGFLRSERSLIQTIGRAA 542 (661)
T ss_dssp TTEEEEEETTTTCCTTTTSHHHHHHHHHTTT
T ss_pred CCCCEEEEeCcccccCCCCHHHHHHHhCccc
Confidence 8999999999875432222344444444443
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.4 Score=42.40 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=52.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.+++++-+..+++.+... ++.+..++|+.....+...+ ....+|+|+|- .+..+ .++.
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~G----idi~ 95 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAARG----LDIP 95 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTCS----TTCC
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhcC----cccc
Confidence 37999999999988888777654 78899999998866554433 34678999993 33333 6778
Q ss_pred CeeEEee
Q 020452 200 TLSFFVL 206 (326)
Q Consensus 200 ~l~~lVi 206 (326)
+++++|.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8888874
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=91.10 E-value=2.3 Score=40.89 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=58.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-+..+++.+..... .++.+..++|+.........+ ....+|||+|. .+..+ +++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G----iDi 357 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 357 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC----CCc
Confidence 44899999999999999999988754 267888999999876654433 34688999994 34443 777
Q ss_pred CCeeEEeecch
Q 020452 199 HTLSFFVLDEA 209 (326)
Q Consensus 199 ~~l~~lViDEa 209 (326)
.++++||.-..
T Consensus 358 p~v~~VI~~~~ 368 (579)
T 3sqw_A 358 PNVHEVLQIGV 368 (579)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEcCC
Confidence 88888886554
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.83 Score=41.07 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=58.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++++.-+..+++.++.. +..+..++|+.........+ ....+|+|+|. .+..+ .++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 309 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----IDI 309 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CCc
Confidence 458999999999999988888775 77888999998876654433 24678999994 34444 778
Q ss_pred CCeeEEeecchhH
Q 020452 199 HTLSFFVLDEADR 211 (326)
Q Consensus 199 ~~l~~lViDEah~ 211 (326)
.+++++|.-+...
T Consensus 310 p~~~~Vi~~~~p~ 322 (395)
T 3pey_A 310 PTVSMVVNYDLPT 322 (395)
T ss_dssp TTEEEEEESSCCB
T ss_pred ccCCEEEEcCCCC
Confidence 8899998766543
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=90.78 E-value=0.83 Score=41.40 Aligned_cols=73 Identities=8% Similarity=0.230 Sum_probs=55.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.+++++-+..+++.+... +..+..++|+.........+ .....|+|+|. .+..+ .++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G----idi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTRG----IDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSSS----CCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccC----CCc
Confidence 348999999999999999988876 77888999998876654433 24678999993 33333 778
Q ss_pred CCeeEEeecc
Q 020452 199 HTLSFFVLDE 208 (326)
Q Consensus 199 ~~l~~lViDE 208 (326)
.+++++|.-+
T Consensus 325 p~~~~Vi~~~ 334 (400)
T 1s2m_A 325 QAVNVVINFD 334 (400)
T ss_dssp TTEEEEEESS
T ss_pred cCCCEEEEeC
Confidence 8888888543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.69 E-value=0.6 Score=41.56 Aligned_cols=74 Identities=16% Similarity=0.394 Sum_probs=54.7
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCccccc
Q 020452 122 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 197 (326)
Q Consensus 122 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~ 197 (326)
.+.++||.+++++-+..+++.++.. +..+..++|+.+.......+ ....+|+|+|. .+..+ .+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 303 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----ID 303 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CC
Confidence 4558999999999999998888775 77889999998876654433 24678999994 22222 56
Q ss_pred CCCeeEEeecc
Q 020452 198 LHTLSFFVLDE 208 (326)
Q Consensus 198 l~~l~~lViDE 208 (326)
+.+++++|.-+
T Consensus 304 ~~~~~~Vi~~~ 314 (367)
T 1hv8_A 304 VNDLNCVINYH 314 (367)
T ss_dssp CSCCSEEEESS
T ss_pred cccCCEEEEec
Confidence 67788887643
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.12 Score=48.24 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=35.5
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
.+-.+|++.+--+.+.+.|.+. .+..|.-++..- +.-.+.+++.||+|||||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g----~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG----IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCCeEEEECCCCCcHHHHHH
Confidence 4556799998777777777652 111222121111 1235789999999999997753
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.17 Score=43.94 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..|.-+.+.+|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 57788999999999999654
|
| >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A | Back alignment and structure |
|---|
Probab=90.13 E-value=1.2 Score=42.18 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=39.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
.+....+.+-||||||++..- ++... +..+|||+|+...|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~~-------------------------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAERH-------------------------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHHS-------------------------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHHh-------------------------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 466789999999999976432 22211 12589999999999999999999864
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=0.93 Score=44.08 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=54.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.|+++.-+.++++.+... ++.+..++|+.........+ ....+|||+|. .+..+ +++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~~G----ID~ 333 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFGMG----IDK 333 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSCTT----CCC
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhcC----CCc
Confidence 458999999999999999988775 78899999999876654433 34679999993 22222 667
Q ss_pred CCeeEEeec
Q 020452 199 HTLSFFVLD 207 (326)
Q Consensus 199 ~~l~~lViD 207 (326)
.++++||.-
T Consensus 334 p~V~~VI~~ 342 (591)
T 2v1x_A 334 PDVRFVIHH 342 (591)
T ss_dssp SCEEEEEES
T ss_pred ccccEEEEe
Confidence 778887743
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=90.06 E-value=1 Score=40.92 Aligned_cols=72 Identities=18% Similarity=0.383 Sum_probs=54.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|+++.-+..+++.+... ++.+..++|+....+....+ .....|+|+|. .+..+ .++.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi~ 343 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDVP 343 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCCT
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhCc----CCcc
Confidence 38999999999999988888775 77888999998876554433 34678999994 34444 7788
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.-+
T Consensus 344 ~v~~Vi~~~ 352 (410)
T 2j0s_A 344 QVSLIINYD 352 (410)
T ss_dssp TEEEEEESS
T ss_pred cCCEEEEEC
Confidence 899888533
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=2 Score=38.11 Aligned_cols=22 Identities=27% Similarity=-0.034 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
|.-+++.|++|+|||...+-.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHH
Confidence 4568899999999997654433
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=89.73 E-value=0.87 Score=42.51 Aligned_cols=21 Identities=33% Similarity=0.072 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l 91 (326)
.|.-+++.|++|+|||...+-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ 219 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALT 219 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH
Confidence 455678899999999965433
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.90 E-value=0.18 Score=47.00 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=34.6
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+-.+|++.+--+.+.+.|.+. .+..|.-++..- +...+.+++.||+|||||+.+-
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g----~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG----IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCceEEEECCCCCCHHHHHH
Confidence 446899998777777777652 111221122111 1234679999999999997753
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.31 Score=45.30 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.1
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+-.+|++.+=-+.+.+.|++. .+..|.-++..-+ .-.+.+++.||+|||||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi----~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI----KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC----CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCCCceECCCCchHHHHH
Confidence 4456899998777777777652 2223333332222 23578999999999999765
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=1.7 Score=42.86 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=58.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-+..+.+.+... ++++..++|+.........+. ...+|+|||- .+..| +++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~G----lDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG----LDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT----CCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhcC----ccC
Confidence 348999999999999988888775 788888999887666554432 4678999993 23333 778
Q ss_pred CCeeEEeecchhHh
Q 020452 199 HTLSFFVLDEADRM 212 (326)
Q Consensus 199 ~~l~~lViDEah~l 212 (326)
.+++++|+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 88999998888754
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.66 E-value=1.6 Score=40.42 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=54.5
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 125 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 125 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
++||.|+++.-+..+++.+... ++.+..++|+....+....+. ....|+|+|. .+..+ .++.+
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 3999999999999988888765 788999999998776554443 4678999995 34444 77888
Q ss_pred eeEEeec
Q 020452 201 LSFFVLD 207 (326)
Q Consensus 201 l~~lViD 207 (326)
+++||.-
T Consensus 369 v~~VI~~ 375 (434)
T 2db3_A 369 IKHVINY 375 (434)
T ss_dssp CCEEEES
T ss_pred CCEEEEE
Confidence 9888853
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.2 Score=44.25 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=34.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-HhcCCcEEEEcCCCchHHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~-~~i~~~-l~~g~dvlv~apTGsGKT~~~~ 90 (326)
+-.+|+++.-.+.+.+.+...-- .+... +.+... +..++.+++.||+|+|||..+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 34579999888888777765300 11100 011111 1346789999999999997653
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=1.3 Score=42.18 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=52.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-++.+++.+... ++.+..++|+.+........ ....+|+|+|. .+..+ +++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~~G----iD~ 302 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGMG----INK 302 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCTT----TCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhCC----CCc
Confidence 347999999999999999888775 78899999999876554333 34689999995 22222 566
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.++++||.
T Consensus 303 p~v~~VI~ 310 (523)
T 1oyw_A 303 PNVRFVVH 310 (523)
T ss_dssp TTCCEEEE
T ss_pred cCccEEEE
Confidence 67777765
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.37 E-value=0.23 Score=46.67 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=36.2
Q ss_pred ccccccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLG---FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g---~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.|-.+|++.+--+.+.+.|++.= +..|.-++..- +.-.+.+++.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G----i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG----IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT----CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC----CCCCCceEeeCCCCCcHHHHH
Confidence 34468999998888888887631 11221121111 134578999999999999765
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.09 E-value=0.09 Score=42.19 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=50.3
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..+++.++.. ++.+..++|+.........+ .....|+|+|. .+..+ .++.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 47999999999999888887765 67888899987665443332 23567999992 23333 5566
Q ss_pred CeeEEeecc
Q 020452 200 TLSFFVLDE 208 (326)
Q Consensus 200 ~l~~lViDE 208 (326)
+++++|.-+
T Consensus 98 ~~~~Vi~~~ 106 (170)
T 2yjt_D 98 DVSHVFNFD 106 (170)
Confidence 677776543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=87.80 E-value=0.52 Score=45.00 Aligned_cols=42 Identities=24% Similarity=0.098 Sum_probs=28.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 46 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 46 ~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+..+.+.|. +++.+..-+...+..|..+++.||||||||...
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 345556663 233344444444568899999999999999653
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=0.57 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.-+++.||||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35668899999999999654
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=87.43 E-value=1 Score=47.42 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=66.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.+++|++++++-+..+++.++.... +.++..++|++........+ ....+|+|||. .+..+ .++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~G----iDi 880 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 880 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cceee----ecc
Confidence 45899999999999999999988743 56888999999876554333 34789999995 34444 788
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~ 229 (326)
.+++++|+..++.. + ...+.....+..
T Consensus 881 p~v~~VIi~~~~~~---~-l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 881 PTANTIIIERADHF---G-LAQLHQLRGRVG 907 (1151)
T ss_dssp TTEEEEEETTTTSS---C-HHHHHHHHTTCC
T ss_pred cCCcEEEEeCCCCC---C-HHHHHHHHhccC
Confidence 89999998877642 1 233445555444
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=87.18 E-value=0.24 Score=42.97 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=34.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q-~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
-..|+++.-.+..++.+...-. .+.+ .+.+... +..+..+++.||+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3479999888888888866311 1111 1111111 134678999999999999765
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.14 E-value=0.28 Score=41.77 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=30.9
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLG--FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g--~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
.+|+++.-.+.+.+.++.+- +..+..+.... +...+.+++.||+|+|||..+-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g----~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG----AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC----------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC----CCCCceEEEECCCCCCHHHHHH
Confidence 36888877777777775520 11111111110 1245679999999999997653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=87.01 E-value=1.6 Score=38.58 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~~l 91 (326)
..|.-+++.|++|+|||...+-
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ 87 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALK 87 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 3456788999999999965433
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=86.57 E-value=0.87 Score=37.08 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
..+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999997653
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=0.69 Score=42.93 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
...++++.|+||+|||... ..++..+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4579999999999999874 44444443
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=86.31 E-value=1.6 Score=37.88 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=31.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHHH-HHHHHhcC---C-cEEEEcCCCchHHHHHH
Q 020452 42 HPLLMKSIYRLGFKEPTPIQKAC-IPAAAHQG---K-DIIGAAETGSGKTLAFG 90 (326)
Q Consensus 42 ~~~i~~~l~~~g~~~p~~~Q~~~-i~~~l~~g---~-dvlv~apTGsGKT~~~~ 90 (326)
...|.+.|+..|+. +++-.. +..++... + .+++.||.|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34788888888883 555333 34444322 2 48999999999998765
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.25 E-value=0.64 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.050 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.++.+++.+|+|+|||..+...+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999877554443
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=85.89 E-value=1.5 Score=36.59 Aligned_cols=52 Identities=6% Similarity=0.028 Sum_probs=32.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHH
Q 020452 42 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQR 96 (326)
Q Consensus 42 ~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~l~il~~ 96 (326)
...|.+.|+-.|+ .+... ...+..++.. ...+++.+|.|+|||..+ ..++..
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 3567777776665 44444 4445555432 125899999999999665 444443
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=85.65 E-value=0.56 Score=40.20 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.||+|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 46789999999999999665
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=85.31 E-value=0.62 Score=43.27 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|.-+++.+|||||||...
T Consensus 166 ~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 4556889999999999653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=84.87 E-value=0.44 Score=37.89 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+..+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=84.78 E-value=0.76 Score=41.31 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=28.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
...|+++--.+...+.+... ...+..-...++.+++.||+|+|||..+-
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l---------~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVV---------LEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESCHHHHHHHHHH---------HHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccChHHHHHHHHHH---------HHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 33466666666665554321 11111110123579999999999997653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.51 E-value=1.8 Score=38.50 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=33.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l----~~g~dvlv~apTGsGKT~~~~ 90 (326)
-.+|++++-.+.+.+.|++.=. .|.+. |.++ ...+.+++.||+|+|||..+-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~~---~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHC---GGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHhC---HHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 3589999888888888865200 01100 1111 123679999999999997653
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=84.46 E-value=1.3 Score=41.20 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=42.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
+.++||++|+++-++.+++.++.. +.++..++|+..............+|+|+|-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 347999999999999999888876 7789999987433333334456789999994
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=84.30 E-value=0.8 Score=40.53 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997654
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=84.10 E-value=2 Score=39.38 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=51.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEc--------CCCHHHHHHH----HhcCCCEEEeCcHHHHHHHhc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERL----LKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~----~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.++||.++++.-+..+++.+... ++.+..++| +....++... ......|+|+|. .+..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~ 431 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 431 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc
Confidence 558999999999999988888775 788889998 5543333222 234678999993 2333
Q ss_pred CCcccccCCCeeEEeecchh
Q 020452 191 GEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah 210 (326)
| .++..+++||+-+..
T Consensus 432 G----ldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 G----LDVPEVDLVVFYEPV 447 (494)
T ss_dssp G----GGSTTCCEEEESSCC
T ss_pred C----CCchhCCEEEEeCCC
Confidence 3 678888888866554
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=84.06 E-value=0.35 Score=41.27 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=31.4
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLG--FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g--~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
-..|+++.-.+.+.+.+...- +..+..++... ....+.+++.||+|+|||..+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG----GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC---------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC----CCCCCeEEEECcCCCCHHHHH
Confidence 357999988888877775520 00111000000 112457999999999999765
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=0.91 Score=42.50 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
-..|+++.-.+.+.+.+... ...+..-...++++++.||+|+|||..+..
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~---------~~~~~~~~~~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVI---------VELIKSKKMAGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp CSEETTEESCHHHHHHHHHH---------HHHHHTTCCTTCEEEEECCTTSSHHHHHHH
T ss_pred hhchhhccCHHHHHHHHHHH---------HHHHHhCCCCCCeEEEECCCcCCHHHHHHH
Confidence 34578887777777666431 011111111346899999999999977643
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=83.90 E-value=2.7 Score=37.68 Aligned_cols=19 Identities=21% Similarity=-0.048 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.-+++.||+|+|||...+-
T Consensus 123 ~i~~I~G~~GsGKTtla~~ 141 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHT 141 (343)
T ss_dssp EEEEEECCTTCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999976543
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=83.89 E-value=0.9 Score=40.30 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.||+|+|||..+
T Consensus 44 ~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHH
T ss_pred HcCCeEEEECCCCCcHHHHH
Confidence 47899999999999999665
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=83.84 E-value=0.57 Score=37.15 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
..++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5689999999999997653
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=83.58 E-value=1.6 Score=39.27 Aligned_cols=19 Identities=42% Similarity=0.455 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999765
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=83.06 E-value=1.2 Score=41.48 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=47.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+.++||+||+++-+..+++.++.. ++++..++|+..............+|+|+|. .+..+ .++. ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEMG----ANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTCC----TTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhee----eccC-ce
Confidence 348999999999999999888875 7789999986544333444455789999994 33433 6677 77
Q ss_pred EEe
Q 020452 203 FFV 205 (326)
Q Consensus 203 ~lV 205 (326)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=82.81 E-value=0.55 Score=39.97 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=32.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
+-.+|+++.-.+.+...++..-.. . -...++..+ +.-.+.+++.+|+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 345799998888877777653110 0 001222221 011345999999999999654
|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* | Back alignment and structure |
|---|
Probab=82.64 E-value=1.4 Score=46.49 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=43.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
...+|.|..|||||.+..--++..+..... +. ........-++|+|+=|++-+.++.+++...+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~-------~~----~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGG-------SA----AFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSS-------SS----SCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCc-------cc----ccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 345999999999999887777776642100 00 000011234799999999999999988887643
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=82.57 E-value=5.8 Score=34.91 Aligned_cols=22 Identities=27% Similarity=0.049 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~i 93 (326)
|.-+++.+++|+|||...+-.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999997654433
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=82.31 E-value=0.57 Score=40.99 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3479999999999997653
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=82.17 E-value=1 Score=39.12 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
.+.++++.||+|+|||..+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36789999999999997653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.12 E-value=0.35 Score=42.09 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~-~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
-.+|++++-.+.+.+.|++.= ..|+.. .++..+ +.-.+.+++.||+|+|||..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 357999988888888886531 122221 222221 112344999999999999665
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.76 E-value=2.1 Score=40.60 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 58 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 58 ~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
...=..++..+ ..+.++++.||+|+|||..+
T Consensus 28 ~~~i~~l~~al-~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAA-LSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHH-HHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHH-hcCCeeEeecCchHHHHHHH
Confidence 33334444444 57899999999999999765
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=81.45 E-value=1.5 Score=36.31 Aligned_cols=32 Identities=31% Similarity=0.298 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 57 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 57 p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
-+.-|..++..+ ..|.-+.+.+|+|+|||...
T Consensus 8 k~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHH-HHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhc-cCCCEEEEECCCCCCHHHHH
Confidence 344567778777 68888999999999999654
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=81.35 E-value=0.94 Score=39.96 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 020452 70 HQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 70 ~~g~dvlv~apTGsGKT~~~ 89 (326)
..+.++++.|++|+|||..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45779999999999999765
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.28 E-value=1.6 Score=41.47 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
+.+++.||+|+|||..+.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 689999999999997653
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=81.28 E-value=1.5 Score=39.91 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~i 93 (326)
.+.++++.|+||+|||...-..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHH
Confidence 56799999999999997654433
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=80.62 E-value=0.73 Score=40.11 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=33.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q-~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+-.+|+++.-.+.+.+.+...=. .+.. .+.+..+-..++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34578888888888877765310 0000 0000011123578999999999999765
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.60 E-value=2.9 Score=37.63 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
..+.+++.||+|+|||..+-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999997653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=80.55 E-value=1.3 Score=40.22 Aligned_cols=22 Identities=45% Similarity=0.518 Sum_probs=18.5
Q ss_pred HHhcCCcEEEEcCCCchHHHHH
Q 020452 68 AAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 68 ~l~~g~dvlv~apTGsGKT~~~ 89 (326)
.+..|..+++.||||||||...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3468999999999999999654
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=80.39 E-value=1.7 Score=42.85 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=47.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCee
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~ 202 (326)
+.++||+||+++-++.+++.++.. ++++..++|...............+|||+|- .+..+ +++. ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v~ 475 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEMG----ANFG-AS 475 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGTT----CCCC-CS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhcc----eeeC-Cc
Confidence 458999999999999888877664 7889999985322222222234679999994 33443 5566 66
Q ss_pred EEe
Q 020452 203 FFV 205 (326)
Q Consensus 203 ~lV 205 (326)
+||
T Consensus 476 ~VI 478 (673)
T 2wv9_A 476 RVI 478 (673)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=80.37 E-value=1.8 Score=40.35 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=47.7
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeE
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~ 203 (326)
.++||.+|++.-++++++.++.. ++.+..++|+..............+|||+|- .+..+ .++.+ ++
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~G----iDip~-~~ 254 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFRA-GR 254 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGSS----CCCCC-SE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHhC----cCCCC-CE
Confidence 37999999999999888887664 7788888887653322222334679999994 34444 56666 55
Q ss_pred Ee
Q 020452 204 FV 205 (326)
Q Consensus 204 lV 205 (326)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=80.02 E-value=1.2 Score=35.79 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 326 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 6e-38 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 7e-33 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 9e-31 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 1e-29 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-29 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 1e-28 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 3e-27 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 9e-25 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 5e-24 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 4e-20 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-19 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 2e-17 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 4e-15 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 1e-08 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 132 bits (332), Expect = 6e-38
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 49/234 (20%)
Query: 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91
E+ +NEL L ++ +I GF++PT IQ IP + +I+ A TGSGKT +F +
Sbjct: 2 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAI 61
Query: 92 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 151
P+++ + A+I+TPTRELA+QV D ++ + N
Sbjct: 62 PLIEL---------------------VNENNGIEAIILTPTRELAIQVADEIESLKGNKN 100
Query: 152 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 211
+++ I GG + Q + LK +VVGTPGR+ + + + + L + +F+LDEAD
Sbjct: 101 LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHI---NRGTLNLKNVKYFILDEADE 156
Query: 212 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M+ G ++++ I++ K ++ L+FSAT+
Sbjct: 157 MLNMGFIKDVEKILNACN------------------------KDKRILLFSATM 186
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 120 bits (300), Expect = 7e-33
Identities = 73/241 (30%), Positives = 119/241 (49%), Gaps = 35/241 (14%)
Query: 25 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSG 84
+ + + ++EL+L P + +I ++ PTPIQK IPA + +DI+ A+TGSG
Sbjct: 12 PDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSG 70
Query: 85 KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 144
KT AF +PI+ L+ + ++Y+ + + LI+ PTRELA+Q+ +
Sbjct: 71 KTAAFLIPIINHLVCQDLN-----------QQRYSKTAYPKCLILAPTRELAIQILSESQ 119
Query: 145 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 204
+ + +R + GG T Q R ++ L+V TPGRL + + + L +
Sbjct: 120 KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCK---YI 176
Query: 205 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264
VLDEADRM++ G +++ II+ M +G RQTL+FSAT
Sbjct: 177 VLDEADRMLDMGFEPQIRKIIEESNMPSG--------------------INRQTLMFSAT 216
Query: 265 I 265
Sbjct: 217 F 217
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 113 bits (283), Expect = 9e-31
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 49/240 (20%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGK 85
+ ++++ L L++ ++ GF+EP+ IQ+ I +G D++ A++G+GK
Sbjct: 2 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGK 60
Query: 86 TLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 145
T F + +QR+ +AL++ PTRELALQ+ +
Sbjct: 61 TGTFSIAALQRIDTS--------------------VKAPQALMLAPTRELALQIQKVVMA 100
Query: 146 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 205
+A ++++V +GG S + L+ ++VVGTPGR+++ + ++ + F+
Sbjct: 101 LAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNI---QRRRFRTDKIKMFI 156
Query: 206 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
LDEAD M+ +G ++ I +LP Q ++ SAT+
Sbjct: 157 LDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATM 192
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (277), Expect = 1e-29
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 51/248 (20%)
Query: 18 DAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIG 77
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+D+I
Sbjct: 4 KVEFETSEEVDVTPTFD---TMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIA 59
Query: 78 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 137
+++G+GKT F + ++Q +ALI+ PTRELA+
Sbjct: 60 QSQSGTGKTATFSISVLQC--------------------LDIQVRETQALILAPTRELAV 99
Query: 138 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 197
Q+ L + +NV+ +GG + + R L +V GTPGR+++++
Sbjct: 100 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR--- 156
Query: 198 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 257
+ VLDEAD M+ G ++ + LP Q
Sbjct: 157 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------------------------PATQ 192
Query: 258 TLVFSATI 265
++ SAT+
Sbjct: 193 VVLISATL 200
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (274), Expect = 2e-29
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 51/234 (21%)
Query: 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 94
+ + L P L+++I GF+ P+ +Q CIP A G D++ A++G GKT F L +
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATL 60
Query: 95 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 154
Q+ G + L++ TRELA Q++ + +K +
Sbjct: 61 QQ--------------------LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 100
Query: 155 VPIVGGMST--EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212
V + G + + +E L K P +VVGTPGR+ L + L + F+LDE D+M
Sbjct: 101 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA---RNKSLNLKHIKHFILDECDKM 157
Query: 213 IEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+E R++Q I M P ++Q ++FSAT+
Sbjct: 158 LEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATL 187
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (270), Expect = 1e-28
Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 49/243 (20%)
Query: 24 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 83
V E+ + D+++++ L L++ IY GF++P+ IQ+ I +G D+I A++G+
Sbjct: 2 VIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQAQSGT 60
Query: 84 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 143
GKT F + I+Q++ + + +AL++ PTRELA Q+ +
Sbjct: 61 GKTATFAISILQQIELDLK--------------------ATQALVLAPTRELAQQIQKVV 100
Query: 144 KEVAKGINVRVV-PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 202
+ + I G + ++L P ++VGTPGR+++++ + + +
Sbjct: 101 MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIK 157
Query: 203 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 262
FVLDEAD M+ G ++ I L Q ++ S
Sbjct: 158 MFVLDEADEMLSRGFKDQIYDIFQKLN------------------------SNTQVVLLS 193
Query: 263 ATI 265
AT+
Sbjct: 194 ATM 196
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (258), Expect = 3e-27
Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 49/231 (21%)
Query: 36 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 95
+ + L L+ I+ +G+++P+PIQ+ IP A G+DI+ A+ G+GK+ A+ +P+++
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLE 63
Query: 96 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRV 154
R K +++A++I PTRELALQV+ +V+K + +V
Sbjct: 64 R--------------------LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103
Query: 155 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 214
+ GG + L +V+ TPGR+ +L+ +K + ++ + VLDEAD+++
Sbjct: 104 MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI---KKGVAKVDHVQMIVLDEADKLLS 160
Query: 215 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
+ ++ II LP K RQ L++SAT
Sbjct: 161 QDFVQIMEDIILTLP------------------------KNRQILLYSATF 187
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.4 bits (241), Expect = 9e-25
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 48/232 (20%)
Query: 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 93
+ + + L L+ I+ GF++P+PIQ+ IP A G+DI+ A+ G+GKT AF +P
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPT 59
Query: 94 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153
+++ ++ALI+ PTRELALQ + ++ + K +
Sbjct: 60 LEK--------------------VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS 99
Query: 154 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213
+ GG + L ++VGTPGR+ +L + + +L S F++DEAD+M+
Sbjct: 100 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA---SRKVADLSDCSLFIMDEADKML 156
Query: 214 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ I+ LP Q+L+FSAT
Sbjct: 157 SRDFKTIIEQILSFLP------------------------PTHQSLLFSATF 184
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 96.1 bits (238), Expect = 5e-24
Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 50/225 (22%)
Query: 47 KSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 106
+R EP IQK + + A TG GKT +
Sbjct: 34 VEFFRKCVGEPRAIQKMWAKRIL-RKESFAATAPTGVGKTSFGLAMSLFLA--------- 83
Query: 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG------ 160
R +I PT L +Q + +++ A+ V ++G
Sbjct: 84 --------------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIP 129
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
++ ++V+ T L KH EL F +D+ D +++
Sbjct: 130 KREKENFMQNLRNFKIVITTTQFLS-------KHYRELGHFDFIFVDDVDAILKASK--- 179
Query: 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
++ +L + G + T S + + +V +AT
Sbjct: 180 --NVDKLLHLL-----GFHYDLK---TKSWVGEARGCLMVSTATA 214
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 84.7 bits (208), Expect = 4e-20
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 47/235 (20%)
Query: 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90
T+F P ++++I L F +PT IQ+ IP A +G+ ++G ++TG+GKT A+
Sbjct: 1 TQFT---RFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYL 56
Query: 91 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150
LPIM++ + E+ + + A ++ + K K
Sbjct: 57 LPIMEK----------------IKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDR 100
Query: 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210
+ ++GG +K L +P +V+GTPGR+ + + + H L V+DEAD
Sbjct: 101 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL---VVDEAD 157
Query: 211 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
M++ G ++ I +P K Q LVFSATI
Sbjct: 158 LMLDMGFITDVDQIAARMP------------------------KDLQMLVFSATI 188
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.9 bits (201), Expect = 4e-19
Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 52/235 (22%)
Query: 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 100
+ + + G +E P Q + GK+++ A T +GKTL + +++
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREA--- 65
Query: 101 REKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 160
++L + P R LA + + K+ K +
Sbjct: 66 --------------------IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDY 105
Query: 161 MSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 220
S ++ +++V T + L+ + +S V+DE +
Sbjct: 106 ESRDEHLG----DCDIIVTTSEKADSLI---RNRASWIKAVSCLVVDEIHLLDSEKRGAT 158
Query: 221 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
L+ ++ + N K + + SAT + + L
Sbjct: 159 LEILVTKMRRMN---------------------KALRVIGLSATAPNVTEIAEWL 192
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 77.0 bits (188), Expect = 2e-17
Identities = 32/234 (13%), Positives = 58/234 (24%), Gaps = 61/234 (26%)
Query: 38 ELRLHPLLMKSIYRL-GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 96
L L + + G+++ P Q+ I G+D + TG GK+L + +P +
Sbjct: 6 VLNLESGAKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL 64
Query: 97 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 156
++++P L D L+
Sbjct: 65 NG--------------------------LTVVVSPLISLMKDQVDQLQANGVAAACLNST 98
Query: 157 IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 216
E + L+ P RL +DEA + + G
Sbjct: 99 QTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAH---WNPVLLAVDEAHCISQWG 155
Query: 217 H-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265
H + L + P + +AT
Sbjct: 156 HDFRPEYAALGQLRQRFP-------------------------TLPFMALTATA 184
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 72.3 bits (176), Expect = 4e-15
Identities = 23/195 (11%), Positives = 50/195 (25%), Gaps = 61/195 (31%)
Query: 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 130
+ + I G+GKT + I++ + K LR LI+
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAI----------------------KRGLRTLILA 45
Query: 131 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190
PTR +A ++ + L+ + + R + + +
Sbjct: 46 PTRVVAAEMEEALRGLPIRYQTPAI-----------RAEHTGREIVDLMCHATFTMRLLS 94
Query: 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 250
+ + + ++DEA + I
Sbjct: 95 P----IRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVE-------------------- 128
Query: 251 LQRKKRQTLVFSATI 265
+ + +AT
Sbjct: 129 --MGEAAGIFMTATP 141
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 52.1 bits (123), Expect = 1e-08
Identities = 34/227 (14%), Positives = 68/227 (29%), Gaps = 52/227 (22%)
Query: 49 IYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 108
+ R +P Q+ + + + TG GKTL + RL
Sbjct: 2 VLRRDLIQPRIYQEVIYAKC--KETNCLIVLPTGLGKTLIAMMIAEYRLT---------- 49
Query: 109 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER 168
K + L++ PT+ L LQ + + + ++V + G S E++ +
Sbjct: 50 ------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSK 97
Query: 169 LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228
+V +L + L +S V DEA R + N + +
Sbjct: 98 AWARAKVIVATPQTIENDL----LAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ 153
Query: 229 PMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 275
K + +A+ + + ++
Sbjct: 154 A------------------------KNPLVIGLTASPGSTPEKIMEV 176
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.97 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.95 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.95 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.93 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.78 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.78 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.78 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.77 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.75 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.75 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.65 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.18 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.98 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.97 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.87 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.15 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.69 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.45 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.99 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.79 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.77 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.55 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 96.17 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.1 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.04 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 96.0 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.99 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.99 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.84 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.83 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 95.79 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.55 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 95.53 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 95.4 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.4 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.21 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.57 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 94.52 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.49 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 94.4 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 94.18 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 93.79 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 93.73 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.6 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.06 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.15 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.12 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.91 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 91.63 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.34 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 91.28 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.01 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.88 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.81 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 90.81 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.42 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.32 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.29 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 90.12 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.57 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.56 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.33 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.76 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.73 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 88.57 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.3 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.62 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 86.3 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 86.22 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 85.9 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 85.67 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.99 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 84.66 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 84.66 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 84.02 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 83.42 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 83.28 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 83.23 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 80.78 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 80.32 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 80.32 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-44 Score=311.24 Aligned_cols=189 Identities=30% Similarity=0.555 Sum_probs=174.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020452 31 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 110 (326)
Q Consensus 31 ~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~ 110 (326)
+...+|++|+|++.++++|+++||..|||+|.++||.++ +|+|++++||||||||++|++|+++++...
T Consensus 14 ~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il-~g~dvi~~a~TGSGKTlayllPil~~l~~~---------- 82 (222)
T d2j0sa1 14 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDIQ---------- 82 (222)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCTT----------
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCeEEEcCcchhhhhhhccccccccccc----------
Confidence 334589999999999999999999999999999999996 899999999999999999999999987322
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 111 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 111 ~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
...++++|++||++|+.|+++.+..+.+..++++..++|+.....+...+..+++|+|+||+++.+++..
T Consensus 83 ----------~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~ 152 (222)
T d2j0sa1 83 ----------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR 152 (222)
T ss_dssp ----------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT
T ss_pred ----------ccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc
Confidence 3467999999999999999999999999999999999999999999888888999999999999999976
Q ss_pred CCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 191 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
.. ..+++++++|+||||.|++.+|...+..|++.++ ..+|+++||||++.
T Consensus 153 ~~---~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~------------------------~~~Q~ilfSAT~~~ 202 (222)
T d2j0sa1 153 RS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------------------------PATQVVLISATLPH 202 (222)
T ss_dssp TS---SCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC------------------------TTCEEEEEESCCCH
T ss_pred cc---cccccceeeeecchhHhhhcCcHHHHHHHHHhCC------------------------CCCEEEEEEEeCCH
Confidence 54 6789999999999999999999999999999998 77999999999984
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-42 Score=296.39 Aligned_cols=195 Identities=34% Similarity=0.613 Sum_probs=173.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
-++|++|+|++.++++|+++||+.|||+|+++||.++ +|+|++++||||||||++|++|+++++..
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvl~~a~TGsGKTlayllP~l~~~~~------------- 67 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDL------------- 67 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCT-------------
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEeeccCccccccccccchhhcccc-------------
Confidence 4689999999999999999999999999999999996 89999999999999999999999987632
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
...+++++|++||++|+.|+++.+..+.+.. +..+....|+.........+..+++|+|+||+++.+++..+
T Consensus 68 -------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~ 140 (206)
T d1veca_ 68 -------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG 140 (206)
T ss_dssp -------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT
T ss_pred -------cccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccch
Confidence 2456799999999999999999999887643 46778888888888888888889999999999999999765
Q ss_pred CcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-HH
Q 020452 192 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-AD 270 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~ 270 (326)
. ..+++++++|+||||.|++.+|...+..|++.++ ..+|+++||||++.. .+
T Consensus 141 ~---~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~------------------------~~~Q~~l~SAT~~~~v~~ 193 (206)
T d1veca_ 141 V---AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------------------KNRQILLYSATFPLSVQK 193 (206)
T ss_dssp C---SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC------------------------TTCEEEEEESCCCHHHHH
T ss_pred h---ccccccceEEEeccccccccchHHHHHHHHHhCC------------------------CCCEEEEEEecCCHHHHH
Confidence 4 6789999999999999999999999999999998 779999999999843 33
Q ss_pred HHHHh
Q 020452 271 FRKKL 275 (326)
Q Consensus 271 ~~~~l 275 (326)
+.+..
T Consensus 194 l~~~~ 198 (206)
T d1veca_ 194 FMNSH 198 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-42 Score=294.94 Aligned_cols=202 Identities=29% Similarity=0.537 Sum_probs=171.9
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 020452 28 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 107 (326)
Q Consensus 28 ~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~ 107 (326)
..|+++.+|++|+|++.++++|+++||++|||+|+++||.++ .|+|++++||||||||++|++|+++++..
T Consensus 4 ~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il-~g~dvl~~a~TGsGKT~a~~lp~i~~l~~-------- 74 (212)
T d1qdea_ 4 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDT-------- 74 (212)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCT--------
T ss_pred CCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEeecccccchhhhhHhhhHhhhhc--------
Confidence 567889999999999999999999999999999999999995 89999999999999999999999998732
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHH
Q 020452 108 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 187 (326)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~l 187 (326)
...+++++|++||++|+.|++..+..+.....+.+..+.++.....+...+ ++++|+|+||+++..+
T Consensus 75 ------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IvI~TP~~l~~~ 141 (212)
T d1qdea_ 75 ------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDN 141 (212)
T ss_dssp ------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-TTCSEEEECHHHHHHH
T ss_pred ------------cCCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh-cCCcEEEECCCccccc
Confidence 245789999999999999999999999888888888888877766555444 4789999999999999
Q ss_pred HhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 188 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 188 l~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+..+. ..+++++++|+||||.|++.+|...+..+++.++ ..+|+++||||+++
T Consensus 142 ~~~~~---~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~------------------------~~~Q~vl~SAT~~~ 194 (212)
T d1qdea_ 142 IQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPN 194 (212)
T ss_dssp HHTTS---SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEEESSCCH
T ss_pred cccCc---eecCcceEEeehhhhhhcccchHHHHHHHHHhCC------------------------CCCeEEEEEeeCCH
Confidence 98764 6799999999999999999999999999999998 77999999999985
Q ss_pred c-HHHHHHhhcc
Q 020452 268 S-ADFRKKLKHG 278 (326)
Q Consensus 268 ~-~~~~~~l~~~ 278 (326)
. .++++++.+.
T Consensus 195 ~v~~l~~~~l~~ 206 (212)
T d1qdea_ 195 DVLEVTTKFMRN 206 (212)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHHHCCC
Confidence 4 5555555433
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-42 Score=298.51 Aligned_cols=194 Identities=29% Similarity=0.544 Sum_probs=170.4
Q ss_pred ccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 020452 27 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 106 (326)
Q Consensus 27 ~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~ 106 (326)
..+++++++|++|+|++.++++|.++||..|+++|+++||.++ .|+|++++||||||||++|++|+++++..
T Consensus 5 ~~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il-~g~dvl~~a~TGsGKTlayllp~l~~i~~------- 76 (218)
T d2g9na1 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIEL------- 76 (218)
T ss_dssp CCCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSSHHHHHHHHHHHHCCT-------
T ss_pred CCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcccchhhhhhhhhhhhheecc-------
Confidence 3467889999999999999999999999999999999999995 89999999999999999999999998732
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHH-HHhcCCCEEEeCcHHHH
Q 020452 107 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER-LLKARPELVVGTPGRLW 185 (326)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~-~~~~~~~IlV~Tp~~l~ 185 (326)
...++++||++||++||.|+++.+..+....+..+..+.++........ .....++|+|+||+++.
T Consensus 77 -------------~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~ 143 (218)
T d2g9na1 77 -------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVF 143 (218)
T ss_dssp -------------TCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHH
T ss_pred -------------cccCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHH
Confidence 2457799999999999999999999999999988888887665443322 23347899999999999
Q ss_pred HHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 186 ~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
+++.++. ..+++++++|+||||.|++.+|...+..+++.++ .++|+++||||+
T Consensus 144 ~~l~~~~---~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~------------------------~~~Q~il~SAT~ 196 (218)
T d2g9na1 144 DMLNRRY---LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------------------SNTQVVLLSATM 196 (218)
T ss_dssp HHHHTTS---SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEEESCC
T ss_pred HHHhcCC---cccccceEEEeeecchhhcCchHHHHHHHHHhCC------------------------CCCeEEEEEecC
Confidence 9997654 6789999999999999999999999999999998 779999999999
Q ss_pred cCc
Q 020452 266 ALS 268 (326)
Q Consensus 266 ~~~ 268 (326)
+..
T Consensus 197 ~~~ 199 (218)
T d2g9na1 197 PSD 199 (218)
T ss_dssp CHH
T ss_pred CHH
Confidence 843
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-42 Score=291.33 Aligned_cols=195 Identities=35% Similarity=0.644 Sum_probs=170.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
..|++|+|++.++++|+++||+.|||+|+++||.++ +|+|++++||||||||++|++|+++++..
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvl~~A~TGsGKTla~~lp~l~~~~~-------------- 65 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 65 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCC--------------
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCeEEEeccccccccccccceeeeecc--------------
Confidence 379999999999999999999999999999999996 89999999999999999999999987522
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC-cEEEEEEcCCCHHHHHHHH-hcCCCEEEeCcHHHHHHHhcC
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGG 191 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~-~~~~~IlV~Tp~~l~~ll~~~ 191 (326)
...+++++|++||++|+.|+++.++.+....+ +++..++|+.....+...+ ...++|+||||+++.++++++
T Consensus 66 ------~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~ 139 (207)
T d1t6na_ 66 ------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 139 (207)
T ss_dssp ------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred ------cCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCC
Confidence 24567999999999999999999999988754 5778889999887776655 467899999999999999865
Q ss_pred CcccccCCCeeEEeecchhHhhhC-CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc-H
Q 020452 192 EKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-A 269 (326)
Q Consensus 192 ~~~~~~l~~l~~lViDEah~l~~~-~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~ 269 (326)
. ..+++++++|+||||.|++. +|...+..+++.++ ..+|+++||||++.. .
T Consensus 140 ~---~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~------------------------~~~Q~il~SAT~~~~v~ 192 (207)
T d1t6na_ 140 S---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKEIR 192 (207)
T ss_dssp S---SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESCCCTTTH
T ss_pred c---eeccccceeehhhhhhhhhcCCcHHHHHHHHHhCC------------------------CCCEEEEEeeeCCHHHH
Confidence 4 67899999999999999975 78899999999998 779999999999854 4
Q ss_pred HHHHHhh
Q 020452 270 DFRKKLK 276 (326)
Q Consensus 270 ~~~~~l~ 276 (326)
++++++.
T Consensus 193 ~l~~~~l 199 (207)
T d1t6na_ 193 PVCRKFM 199 (207)
T ss_dssp HHHHTTC
T ss_pred HHHHHHC
Confidence 5555443
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=6.3e-42 Score=298.42 Aligned_cols=207 Identities=35% Similarity=0.586 Sum_probs=179.8
Q ss_pred cccccccccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 020452 26 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 105 (326)
Q Consensus 26 ~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~ 105 (326)
+.+.++++.+|++|+|++.++++|+++||..|+|+|.++||.++ +|+|++++||||||||++|++|+++++......
T Consensus 13 ~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il-~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~-- 89 (238)
T d1wrba1 13 DYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN-- 89 (238)
T ss_dssp SSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhh-CCCCEEEECCCCCCcceeeHHHHHHHHHhcccc--
Confidence 34557789999999999999999999999999999999999995 899999999999999999999999998643211
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHH
Q 020452 106 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 185 (326)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~ 185 (326)
........+++++|++||++||.|+++.+..+....++++..++|+.....+.+....++||+||||++|.
T Consensus 90 ---------~~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~ 160 (238)
T d1wrba1 90 ---------QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLV 160 (238)
T ss_dssp --------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHH
T ss_pred ---------cccccCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHH
Confidence 01223355789999999999999999999999999999999999999988888888889999999999999
Q ss_pred HHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 186 ~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
+++..+. ..+.+++++|+||||.|++.+|..++..+++.+..... .++|+++||||+
T Consensus 161 ~~~~~~~---~~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~--------------------~~~Q~il~SAT~ 217 (238)
T d1wrba1 161 DFIEKNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG--------------------INRQTLMFSATF 217 (238)
T ss_dssp HHHHTTS---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCG--------------------GGCEEEEEESSC
T ss_pred hHHccCc---eeccccceeeeehhhhhhhhccHHHHHHHHHHhcCCCC--------------------CCCEEEEEeeeC
Confidence 9998654 67899999999999999999999999999987763211 457999999999
Q ss_pred cC
Q 020452 266 AL 267 (326)
Q Consensus 266 ~~ 267 (326)
+.
T Consensus 218 ~~ 219 (238)
T d1wrba1 218 PK 219 (238)
T ss_dssp CH
T ss_pred CH
Confidence 73
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-40 Score=283.68 Aligned_cols=187 Identities=35% Similarity=0.645 Sum_probs=169.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 112 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~ 112 (326)
+.+|++|+|++.++++|+++||..|+|+|.++||.+++.+.|+++++|||+|||++|++|+++...
T Consensus 3 ~msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~-------------- 68 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN-------------- 68 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC--------------
T ss_pred ccCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccc--------------
Confidence 469999999999999999999999999999999998744469999999999999999999988642
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCC
Q 020452 113 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 192 (326)
Q Consensus 113 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~ 192 (326)
...++++||++||++||.|+++.++.+....+.++..++|+.....+...+. +++|+||||+++.++++++.
T Consensus 69 -------~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~~~ 140 (208)
T d1hv8a1 69 -------ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT 140 (208)
T ss_dssp -------SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC
T ss_pred -------cccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHcCC
Confidence 2457799999999999999999999999999999999999998887766554 79999999999999997654
Q ss_pred cccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 193 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 193 ~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
..+++++++|+||||+|++.++...+..+++.++ .++|++++|||+++.
T Consensus 141 ---~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~------------------------~~~Q~i~~SAT~~~~ 189 (208)
T d1hv8a1 141 ---LNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------------------KDKRILLFSATMPRE 189 (208)
T ss_dssp ---SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC------------------------SSCEEEEECSSCCHH
T ss_pred ---CCcccCcEEEEEChHHhhcCCChHHHHHHHHhCC------------------------CCCeEEEEEccCCHH
Confidence 6789999999999999999999999999999998 779999999999843
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-40 Score=281.03 Aligned_cols=185 Identities=34% Similarity=0.629 Sum_probs=172.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
++|++|+|++.++++|+++||..|||+|+++||.++ +|+|+++.||||||||++|++|+++++...
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il-~g~dvi~~a~tGsGKTlay~lp~i~~~~~~------------- 66 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPK------------- 66 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTT-------------
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEecCCcchhhhhhccccccccccc-------------
Confidence 489999999999999999999999999999999995 899999999999999999999999876322
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCc
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
..++++++++|+++++.|....+..+....++++..++|+.........+..+++|+|+||+++.++++...
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~- 138 (206)
T d1s2ma1 67 -------LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV- 138 (206)
T ss_dssp -------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-
T ss_pred -------cccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccce-
Confidence 346689999999999999999999999999999999999999999988888999999999999999998654
Q ss_pred ccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 194 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
..+.+++++|+||||.|++.+|...+..|++.++ ..+|+++||||++
T Consensus 139 --~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~------------------------~~~Q~il~SATl~ 185 (206)
T d1s2ma1 139 --ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------------------------PTHQSLLFSATFP 185 (206)
T ss_dssp --SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC------------------------SSCEEEEEESCCC
T ss_pred --eecccceEEEeechhhhhhhhhHHHHHHHHHhCC------------------------CCCEEEEEEEeCC
Confidence 6789999999999999999999999999999998 7799999999997
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2e-37 Score=264.88 Aligned_cols=186 Identities=35% Similarity=0.622 Sum_probs=162.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
++|++|||++.++++|+++||++|+|+|+++||.++ +|+|++++||||||||++|++|+++.+...
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvii~a~TGSGKTlayllp~l~~~~~~------------- 66 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPE------------- 66 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTT-------------
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCeEeecccccccceeeeeeeccccccc-------------
Confidence 479999999999999999999999999999999995 899999999999999999999999876322
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC----CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
...+..++++|+..++.+.+..+....... ...+..+.++.....+......+++|+|+||+++..++.
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~ 139 (209)
T d1q0ua_ 67 -------RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIR 139 (209)
T ss_dssp -------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHH
T ss_pred -------cccccccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhh
Confidence 345689999999999999999998876654 345666677666655555566789999999999999987
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccC
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 267 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 267 (326)
+.. ..+++++++|+||||.+++++|...+..++..++ +++|++++|||++.
T Consensus 140 ~~~---~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~~------------------------~~~Q~il~SATl~~ 190 (209)
T d1q0ua_ 140 EQA---LDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------KDLQMLVFSATIPE 190 (209)
T ss_dssp TTC---CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC------------------------TTCEEEEEESCCCG
T ss_pred hhc---cccccceEEEEeecccccccccHHHHHHHHHHCC------------------------CCCEEEEEEccCCH
Confidence 654 5678999999999999999999999999999998 77999999999973
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=2.1e-31 Score=225.97 Aligned_cols=186 Identities=19% Similarity=0.228 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 020452 41 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 120 (326)
Q Consensus 41 l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (326)
+++++...|++.||..|+|+|+++++.++ +|+|+++++|||+|||.++.++++..+..
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~-~~~~~il~apTGsGKT~~a~l~i~~~~~~--------------------- 67 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK--------------------- 67 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT---------------------
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCchhHHHHHHHHHHhhc---------------------
Confidence 67889999999999999999999999984 89999999999999999999988876632
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCC
Q 020452 121 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 200 (326)
Q Consensus 121 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~ 200 (326)
+.++||++|+++|+.|+++.++.+... ..++....|+..... .....++|+++||..+..++.+.. ..+.+
T Consensus 68 --~~~vl~l~P~~~L~~q~~~~~~~~~~~-~~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~ 138 (202)
T d2p6ra3 68 --GGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRA---SWIKA 138 (202)
T ss_dssp --TCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTC---SGGGG
T ss_pred --cCcceeecccHHHHHHHHHHHHHHhhc-cccceeeccCccccc---ccccccceeeeccHHHHHHHhccc---hhhhh
Confidence 337999999999999999999887654 345555665543221 122468899999999998887653 56778
Q ss_pred eeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCcHHHHHHhhcc
Q 020452 201 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 278 (326)
Q Consensus 201 l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 278 (326)
++++|+||+|.+.+..+...+..++..+...+ ++.|+|++|||++|.+++++||...
T Consensus 139 ~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~---------------------~~~~~l~lSATl~n~~~~~~~l~~~ 195 (202)
T d2p6ra3 139 VSCLVVDEIHLLDSEKRGATLEILVTKMRRMN---------------------KALRVIGLSATAPNVTEIAEWLDAD 195 (202)
T ss_dssp CCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC---------------------TTCEEEEEECCCTTHHHHHHHTTCE
T ss_pred hhhccccHHHHhcccccchHHHHHHHHHHhcC---------------------CCCcEEEEcCCCCcHHHHHHHcCCC
Confidence 99999999999988877766666665543111 5689999999999999999999754
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.3e-29 Score=212.88 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=138.4
Q ss_pred ccccCCCCHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 35 AWNELRLHPLLMKSIYRL-GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~-g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
.++.++|++.+.+.|+++ ||..++|+|.++++.++ +|+|+++++|||+|||++|.+|++..
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l-~g~~vlv~apTGsGKT~~~~~~~~~~----------------- 64 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL----------------- 64 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS-----------------
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCCCcchhhhhhhhc-----------------
Confidence 578899999999999986 99999999999999985 89999999999999999999988753
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHH----HHHHhcCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ----ERLLKARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~----~~~~~~~~~IlV~Tp~~l~~ll~ 189 (326)
..++++++|+++|+.|+.+.++.+. .......+....... ........+|+++||.++.....
T Consensus 65 ---------~~~~~~v~P~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~ 131 (206)
T d1oywa2 65 ---------NGLTVVVSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF 131 (206)
T ss_dssp ---------SSEEEEECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTH
T ss_pred ---------cCceEEeccchhhhhhHHHHHHhhc----ccccccccccccccchhHHHHHhcCCceEEEEechhhhchhh
Confidence 2389999999999999999998873 344444444443322 22334578999999988754332
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCH-----HHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeee
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHF-----RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 264 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~-----~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 264 (326)
. .......++++|+||+|++.++++. ..+..++..++ ++|++++|||
T Consensus 132 ~---~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~ii~lSAT 183 (206)
T d1oywa2 132 L---EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------------------------TLPFMALTAT 183 (206)
T ss_dssp H---HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------------------------TSCEEEEESC
T ss_pred c---ccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhCC-------------------------CCceEEEEeC
Confidence 1 2245678999999999999876541 23344444443 5899999999
Q ss_pred ccCc--HHHHHHhh
Q 020452 265 IALS--ADFRKKLK 276 (326)
Q Consensus 265 l~~~--~~~~~~l~ 276 (326)
++.. +++.++|.
T Consensus 184 l~~~v~~di~~~L~ 197 (206)
T d1oywa2 184 ADDTTRQDIVRLLG 197 (206)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcC
Confidence 9854 35556653
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=1e-27 Score=208.11 Aligned_cols=192 Identities=20% Similarity=0.235 Sum_probs=136.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020452 32 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 111 (326)
Q Consensus 32 ~~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~ 111 (326)
.+..|.+..+.+.+.+ +.+.++.+|+++|+++++.++ .|+|++++||||+|||++++++++....
T Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~Q~~~i~~~l-~g~~~~i~apTGsGKT~~~~~~~~~~~~------------- 84 (237)
T d1gkub1 20 SLCLFPEDFLLKEFVE-FFRKCVGEPRAIQKMWAKRIL-RKESFAATAPTGVGKTSFGLAMSLFLAL------------- 84 (237)
T ss_dssp CCSCCTTHHHHHHHHH-HHHTTTCSCCHHHHHHHHHHH-TTCCEECCCCBTSCSHHHHHHHHHHHHT-------------
T ss_pred ccccCccchhHHHHHH-HHHhccCCCCHHHHHHHHHHH-CCCCEEEEecCCChHHHHHHHHHHHHHH-------------
Confidence 3445655555666655 445588899999999999996 8999999999999999999998876541
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEE----EEEEcCCCHHHHHHHHh--cCCCEEEeCcHHHH
Q 020452 112 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV----VPIVGGMSTEKQERLLK--ARPELVVGTPGRLW 185 (326)
Q Consensus 112 ~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v----~~~~g~~~~~~~~~~~~--~~~~IlV~Tp~~l~ 185 (326)
.+.++||++||++|+.|+++.++++++..++++ ....++.........+. .+++|+|+||+++.
T Consensus 85 ----------~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~ 154 (237)
T d1gkub1 85 ----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLS 154 (237)
T ss_dssp ----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHH
T ss_pred ----------hcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHH
Confidence 245899999999999999999999988776543 33444444444433333 46799999999876
Q ss_pred HHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 186 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 186 ~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
+.+ ..+.+++++|+||+|.|++.+ ..+..++..+.... .........+...|++++|||+
T Consensus 155 ~~~-------~~~~~~~~vVvDE~d~~l~~~--~~~~~~~~~~g~~~-----------~~~~~~~~~~~~~~~i~~SAT~ 214 (237)
T d1gkub1 155 KHY-------RELGHFDFIFVDDVDAILKAS--KNVDKLLHLLGFHY-----------DLKTKSWVGEARGCLMVSTATA 214 (237)
T ss_dssp HCS-------TTSCCCSEEEESCHHHHHTST--HHHHHHHHHTTEEE-----------ETTTTEEEECCSSEEEECCCCS
T ss_pred Hhh-------hhcCCCCEEEEEChhhhhhcc--cchhHHHHhcCChH-----------HHHHHHhhCCCCCeEEEEeCCC
Confidence 543 346778999999999998764 34444444432000 0001112223567999999999
Q ss_pred cCc
Q 020452 266 ALS 268 (326)
Q Consensus 266 ~~~ 268 (326)
++.
T Consensus 215 ~~~ 217 (237)
T d1gkub1 215 KKG 217 (237)
T ss_dssp CCC
T ss_pred Ccc
Confidence 854
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=4.1e-25 Score=186.24 Aligned_cols=161 Identities=22% Similarity=0.298 Sum_probs=127.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
+|+++|.+++..+ .++|+++++|||+|||+++++++...+.+. +.+++|++|+++|
T Consensus 9 ~pr~~Q~~~~~~~--~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~----------------------~~~il~i~P~~~L 64 (200)
T d1wp9a1 9 QPRIYQEVIYAKC--KETNCLIVLPTGLGKTLIAMMIAEYRLTKY----------------------GGKVLMLAPTKPL 64 (200)
T ss_dssp CCCHHHHHHHHHG--GGSCEEEECCTTSCHHHHHHHHHHHHHHHS----------------------CSCEEEECSSHHH
T ss_pred CCCHHHHHHHHHH--hcCCeEEEeCCCCcHHHHHHHHHHHHHHhc----------------------CCcEEEEcCchHH
Confidence 7999999999887 367899999999999999988776655321 3379999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+++.+.+++...+.++....++.........+. .++|+++||+.+...+.... ..+++++++|+||||++...
T Consensus 65 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~---~~~~~~~~vIiDE~H~~~~~ 140 (200)
T d1wp9a1 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGN 140 (200)
T ss_dssp HHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHhhcccccceeeeecccchhHHHHhhh-cccccccccchhHHHHhhhh---hhccccceEEEEehhhhhcc
Confidence 999999999998888888888888887766655544 46899999999998887653 56788999999999998765
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.....+...+.... ...+++++|||....
T Consensus 141 ~~~~~~~~~~~~~~------------------------~~~~~l~~SATp~~~ 169 (200)
T d1wp9a1 141 YAYVFIAREYKRQA------------------------KNPLVIGLTASPGST 169 (200)
T ss_dssp CHHHHHHHHHHHHC------------------------SSCCEEEEESCSCSS
T ss_pred hhHHHHHHHHHhcC------------------------CCCcEEEEEecCCCc
Confidence 44444433333322 457899999998654
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1e-17 Score=142.66 Aligned_cols=166 Identities=24% Similarity=0.274 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHH---hcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020452 40 RLHPLLMKSIYR-LGFKEPTPIQKACIPAAA---HQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 113 (326)
Q Consensus 40 ~l~~~i~~~l~~-~g~~~p~~~Q~~~i~~~l---~~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 113 (326)
..+....+.+.. +.| .+|+-|..++..+. .++ .+.+++|.||||||.+|+..+...+
T Consensus 39 ~~~~~~~~~~~~~lP~-~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~---------------- 101 (233)
T d2eyqa3 39 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---------------- 101 (233)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH----------------
T ss_pred CCCHHHHHhhhhcccc-ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH----------------
Confidence 445666666655 566 89999999998763 233 3789999999999999999888876
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHh
Q 020452 114 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMS 189 (326)
Q Consensus 114 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~ 189 (326)
..+.++++++||..|+.|.++.+++++..+++.+..++|..........+ ....+|+|||-..+.
T Consensus 102 -------~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~---- 170 (233)
T d2eyqa3 102 -------DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ---- 170 (233)
T ss_dssp -------TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----
T ss_pred -------HcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc----
Confidence 23559999999999999999999999999999999999999876654443 346899999965542
Q ss_pred cCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 190 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 190 ~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
. ...++++.++|+||-|+.. + .+-+.+.... .++.++++|||..
T Consensus 171 ~----~~~f~~LgLiIiDEeH~fg---~-kQ~~~l~~~~-------------------------~~~~~l~~SATPi 214 (233)
T d2eyqa3 171 S----DVKFKDLGLLIVDEEHRFG---V-RHKERIKAMR-------------------------ANVDILTLTATPI 214 (233)
T ss_dssp S----CCCCSSEEEEEEESGGGSC---H-HHHHHHHHHH-------------------------TTSEEEEEESSCC
T ss_pred c----CCccccccceeeechhhhh---h-HHHHHHHhhC-------------------------CCCCEEEEecchh
Confidence 2 1557899999999999653 2 2223333222 4578999999986
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.78 E-value=3.5e-20 Score=165.25 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=96.7
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 020452 69 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 148 (326)
Q Consensus 69 l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 148 (326)
+..|+++++.||||||||++|+.+++...... +.++||++||++|+.|+++.++.+.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~----------------------~~~~lvi~Ptr~La~q~~~~l~~~~- 62 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------------------GLRTLILAPTRVVAAEMEEALRGLP- 62 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH----------------------TCCEEEEESSHHHHHHHHHHTTTSC-
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc----------------------CCEEEEEccHHHHHHHHHHHHhcCC-
Confidence 36899999999999999999988888766443 4489999999999999998876552
Q ss_pred CCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhC
Q 020452 149 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 228 (326)
Q Consensus 149 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l 228 (326)
..+.... ..........|+++|++.+...+... ..+.+++++|+||+|++..+++ ....++..+
T Consensus 63 ---~~~~~~~-------~~~~~~~~~~i~~~t~~~l~~~~~~~----~~~~~~~~vViDE~H~~~~~~~--~~~~~l~~~ 126 (305)
T d2bmfa2 63 ---IRYQTPA-------IRAEHTGREIVDLMCHATFTMRLLSP----IRVPNYNLIIMDEAHFTDPASI--AARGYISTR 126 (305)
T ss_dssp ---CBCCC---------------CCCSEEEEEHHHHHHHHTSS----SCCCCCSEEEEESTTCCSHHHH--HHHHHHHHH
T ss_pred ---cceeeeE-------EeecccCccccccCCcHHHHHHHhcC----ccccceeEEEeeeeeecchhhH--HHHHHHHHh
Confidence 2211111 11122345689999999987776543 4568899999999998875432 122222222
Q ss_pred CCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 229 PMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
.. ....|++++|||.+..
T Consensus 127 ~~----------------------~~~~~~v~~SAT~~~~ 144 (305)
T d2bmfa2 127 VE----------------------MGEAAGIFMTATPPGS 144 (305)
T ss_dssp HH----------------------HTSCEEEEECSSCTTC
T ss_pred hc----------------------cccceEEEeecCCCcc
Confidence 10 0468999999999854
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.78 E-value=2.3e-19 Score=158.66 Aligned_cols=153 Identities=23% Similarity=0.219 Sum_probs=110.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|.+++..++ ..+..++.+|||+|||++....+ ..+.... ..++||+||+++|
T Consensus 113 ~~rdyQ~~av~~~l-~~~~~il~~pTGsGKT~i~~~i~-~~~~~~~---------------------~~k~Liivp~~~L 169 (282)
T d1rifa_ 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLA-RYYLENY---------------------EGKILIIVPTTAL 169 (282)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEECCCTTSCHHHHHHHHH-HHHHHHC---------------------SSEEEEECSSHHH
T ss_pred ccchHHHHHHHHHH-hcCCceeEEEcccCccHHHHHHH-HHhhhcc---------------------cceEEEEEcCchh
Confidence 79999999999997 56778999999999998865433 3332221 2389999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+++.+..+.......+..+.++...... .....+|+|+|++.+..... ..++++++||+||||++-
T Consensus 170 v~Q~~~~f~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~~------~~~~~f~~VIvDEaH~~~-- 238 (282)
T d1rifa_ 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK------EWFSQFGMMMNDECHLAT-- 238 (282)
T ss_dssp HHHHHHHHHHHTSCCGGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSCG------GGGGGEEEEEEETGGGCC--
T ss_pred HHHHHHHHHHhhccccccceeecceeccccc---ccccceEEEEeeehhhhhcc------cccCCCCEEEEECCCCCC--
Confidence 9999999999876555556666665432211 12356899999987643321 346789999999999864
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeeccCc
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 268 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 268 (326)
...+..++..+. .....+++|||+.+.
T Consensus 239 --a~~~~~il~~~~------------------------~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 239 --GKSISSIISGLN------------------------NCMFKFGLSGSLRDG 265 (282)
T ss_dssp --HHHHHHHTTTCT------------------------TCCEEEEECSSCCTT
T ss_pred --chhHHHHHHhcc------------------------CCCeEEEEEeecCCC
Confidence 345666666554 223458999998644
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=7.5e-19 Score=152.54 Aligned_cols=139 Identities=24% Similarity=0.341 Sum_probs=112.2
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHh---cC--CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020452 43 PLLMKSIYRLGFKEPTPIQKACIPAAAH---QG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 117 (326)
Q Consensus 43 ~~i~~~l~~~g~~~p~~~Q~~~i~~~l~---~g--~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 117 (326)
+.+-+.++.+.| .+|+-|.+++..+.. ++ .+.+++|.||||||.+|+..++..+..
T Consensus 71 ~l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~------------------ 131 (264)
T d1gm5a3 71 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 131 (264)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc------------------
Confidence 334444566888 899999999988742 23 477999999999999999988877643
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCc
Q 020452 118 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEK 193 (326)
Q Consensus 118 ~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~ 193 (326)
+.++++++||..|+.|.++.+++++...++.+..++|+....+....+. +.++|+|||-.-+.+ .
T Consensus 132 -----g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~----~-- 200 (264)
T d1gm5a3 132 -----GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----D-- 200 (264)
T ss_dssp -----TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----C--
T ss_pred -----ccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcC----C--
Confidence 3489999999999999999999999999999999999998776554443 478999999755432 1
Q ss_pred ccccCCCeeEEeecchhHhh
Q 020452 194 HLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 194 ~~~~l~~l~~lViDEah~l~ 213 (326)
..+++++++|+||-|+..
T Consensus 201 --~~f~~LglviiDEqH~fg 218 (264)
T d1gm5a3 201 --VHFKNLGLVIIDEQHRFG 218 (264)
T ss_dssp --CCCSCCCEEEEESCCCC-
T ss_pred --CCccccceeeeccccccc
Confidence 457889999999999765
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.75 E-value=1.3e-18 Score=146.82 Aligned_cols=136 Identities=22% Similarity=0.159 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.|+++|++++..++ ++++.++.+|||+|||++++..+ ..+ +.++||+||+++|
T Consensus 70 ~Lr~yQ~eav~~~~-~~~~~ll~~~tG~GKT~~a~~~~-~~~-------------------------~~~~Liv~p~~~L 122 (206)
T d2fz4a1 70 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAI-NEL-------------------------STPTLIVVPTLAL 122 (206)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHH-HHS-------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hCCCcEEEeCCCCCceehHHhHH-HHh-------------------------cCceeEEEcccch
Confidence 68999999999985 67788899999999998875433 221 2379999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhC
Q 020452 136 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 215 (326)
Q Consensus 136 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~ 215 (326)
+.|+.+.++.+.. ..+....|+.. ...+|+|+|.+.+..... ...+++++||+||||++...
T Consensus 123 ~~q~~~~~~~~~~---~~~~~~~~~~~---------~~~~i~i~t~~~~~~~~~------~~~~~~~lvIiDEaH~~~a~ 184 (206)
T d2fz4a1 123 AEQWKERLGIFGE---EYVGEFSGRIK---------ELKPLTVSTYDSAYVNAE------KLGNRFMLLIFDEVHHLPAE 184 (206)
T ss_dssp HHHHHHHHGGGCG---GGEEEESSSCB---------CCCSEEEEEHHHHHHTHH------HHTTTCSEEEEECSSCCCTT
T ss_pred HHHHHHHHHhhcc---cchhhcccccc---------cccccccceehhhhhhhH------hhCCcCCEEEEECCeeCCcH
Confidence 9999999887643 23444444322 346799999988765543 22456889999999998543
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 216 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 216 ~~~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
. +..++..++ ....+++|||+
T Consensus 185 ~----~~~i~~~~~-------------------------~~~~lgLTATl 205 (206)
T d2fz4a1 185 S----YVQIAQMSI-------------------------APFRLGLTATF 205 (206)
T ss_dssp T----HHHHHHTCC-------------------------CSEEEEEEESC
T ss_pred H----HHHHHhccC-------------------------CCcEEEEecCC
Confidence 2 344555443 34678999997
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.75 E-value=2.2e-19 Score=141.16 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=90.7
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 020452 68 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147 (326)
Q Consensus 68 ~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 147 (326)
+++.|+++++++|||+|||.+++..++...... +.++++++|++++++|.++.+...
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~----------------------~~~vli~~p~~~l~~q~~~~~~~~- 59 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------------------RLRTLVLAPTRVVLSEMKEAFHGL- 59 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc----------------------CceeeeeecchhHHHHHHHHhhhh-
Confidence 357899999999999999988866666554322 448999999999999988776433
Q ss_pred cCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCH-HHHHHHHH
Q 020452 148 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF-RELQSIID 226 (326)
Q Consensus 148 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~-~~i~~il~ 226 (326)
+..+....+.... .....+.+.|...+....... ..+.+++++|+||||++...++. ..+...+.
T Consensus 60 ---~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~----~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~ 125 (140)
T d1yksa1 60 ---DVKFHTQAFSAHG-------SGREVIDAMCHATLTYRMLEP----TRVVNWEVIIMDEAHFLDPASIAARGWAAHRA 125 (140)
T ss_dssp ---CEEEESSCCCCCC-------CSSCCEEEEEHHHHHHHHTSS----SCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH
T ss_pred ---hhhhccccccccc-------ccccchhhhhHHHHHHHHhcc----ccccceeEEEEccccccChhhHHHHHHHHHHh
Confidence 3333222211111 123567778877776655332 56788999999999987533221 11222222
Q ss_pred hCCCCCCCCCCCcccccccccccccCCCCceEEEEeeecc
Q 020452 227 MLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 266 (326)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 266 (326)
.. ...+++++|||.|
T Consensus 126 ~~-------------------------~~~~~l~lTATPp 140 (140)
T d1yksa1 126 RA-------------------------NESATILMTATPP 140 (140)
T ss_dssp HT-------------------------TSCEEEEECSSCT
T ss_pred hC-------------------------CCCCEEEEEcCCC
Confidence 22 4689999999986
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.65 E-value=4.6e-17 Score=127.89 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=88.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 150 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 150 (326)
..+..++.+|||+|||..+...+. ..+.+++|++|+++|++|+.+.+.+.....
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~--------------------------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~ 60 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA--------------------------AQGYKVLVLNPSVAATLGFGAYMSKAHGVD 60 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH--------------------------TTTCCEEEEESCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH--------------------------HcCCcEEEEcChHHHHHHHHHHHHHHhhcc
Confidence 456779999999999976533221 114489999999999999999998876532
Q ss_pred CcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 151 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 151 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
.....++... .....++++|.+.+..... ..+++++++|+||+|++... ....+..+++.+..
T Consensus 61 ---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~------~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~ 123 (136)
T d1a1va1 61 ---PNIRTGVRTI-------TTGSPITYSTYGKFLADGG------CSGGAYDIIICDECHSTDAT-SILGIGTVLDQAET 123 (136)
T ss_dssp ---CEEECSSCEE-------CCCCSEEEEEHHHHHHTTG------GGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTT
T ss_pred ---cccccccccc-------ccccceEEEeeeeeccccc------hhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHH
Confidence 2223333221 1235688999887654332 45778999999999976432 23345566666552
Q ss_pred CCCCCCCCcccccccccccccCCCCceEEEEeeec
Q 020452 231 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 265 (326)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 265 (326)
. ...+++++|||.
T Consensus 124 ~----------------------~~~~~l~~TATP 136 (136)
T d1a1va1 124 A----------------------GARLVVLATATP 136 (136)
T ss_dssp T----------------------TCSEEEEEESSC
T ss_pred C----------------------CCCcEEEEeCCC
Confidence 1 467899999994
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.18 E-value=2.6e-10 Score=100.54 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHH--------hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 020452 56 EPTPIQKACIPAAA--------HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 127 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l--------~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (326)
.++|||.+++.-+. ..+...|+.-..|.|||+..+..+ ..+.... ........++|
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l-~~l~~~~---------------~~~~~~~~~~L 118 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI-WTLLKQS---------------PDCKPEIDKVI 118 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHH-HHHHHCC---------------TTSSCSCSCEE
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHH-HHHHHhc---------------ccccCCCCcEE
Confidence 68999999986442 234568999999999998765433 3332211 11112234699
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHH--Hh------cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 128 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL--LK------ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 128 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~--~~------~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
||||.. |+.|+.+++.+++.. ...+...+|+......... .. ...+++|+|.+.+...... ..-.
T Consensus 119 IV~P~s-l~~qW~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~-----l~~~ 191 (298)
T d1z3ix2 119 VVSPSS-LVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKG 191 (298)
T ss_dssp EEECHH-HHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTS
T ss_pred EEccch-hhHHHHHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc-----cccc
Confidence 999975 889999999998764 2344455555433222111 11 1357999998887654432 1123
Q ss_pred CeeEEeecchhHhhhC
Q 020452 200 TLSFFVLDEADRMIEN 215 (326)
Q Consensus 200 ~l~~lViDEah~l~~~ 215 (326)
+.+++|+||+|++-+.
T Consensus 192 ~~~~vI~DEaH~ikn~ 207 (298)
T d1z3ix2 192 KVGLVICDEGHRLKNS 207 (298)
T ss_dssp CCCEEEETTGGGCCTT
T ss_pred ceeeeecccccccccc
Confidence 4679999999998644
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.98 E-value=6.4e-10 Score=94.14 Aligned_cols=126 Identities=19% Similarity=0.157 Sum_probs=80.7
Q ss_pred CChHHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 56 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
.+.|+|.+++.-+. ..+...++.-++|.|||+..+..+ ..+... ....++||+||
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~-~~~~~~--------------------~~~~~~LIv~p- 69 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKE--------------------NELTPSLVICP- 69 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHT--------------------TCCSSEEEEEC-
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhh-hhhhhc--------------------ccccccceecc-
Confidence 58899999986432 345678999999999999875543 333221 11236899999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHh
Q 020452 133 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 212 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l 212 (326)
..+..|+.+.+..+.... .+....+..... ...+.+|+++|.+.+...-. ..--..+++|+||+|.+
T Consensus 70 ~~l~~~W~~e~~~~~~~~--~~~~~~~~~~~~-----~~~~~~vvi~~~~~~~~~~~------l~~~~~~~vI~DEah~~ 136 (230)
T d1z63a1 70 LSVLKNWEEELSKFAPHL--RFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNI 136 (230)
T ss_dssp STTHHHHHHHHHHHCTTS--CEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGG
T ss_pred hhhhhHHHHHHHhhcccc--cceeeccccchh-----hccCcCEEEeeHHHHHhHHH------HhcccceEEEEEhhhcc
Confidence 567888898888875532 333222211110 01246899999887643211 12234788999999998
Q ss_pred hhCC
Q 020452 213 IENG 216 (326)
Q Consensus 213 ~~~~ 216 (326)
-...
T Consensus 137 k~~~ 140 (230)
T d1z63a1 137 KNPQ 140 (230)
T ss_dssp SCTT
T ss_pred cccc
Confidence 7543
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.97 E-value=5.8e-09 Score=88.44 Aligned_cols=133 Identities=23% Similarity=0.323 Sum_probs=106.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 52 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 52 ~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
+|. +|+++|-..--.+ ..|+ +....||-|||++..+|+.-..+. |..+-|++.
T Consensus 77 lG~-RhyDVQLiGgi~L-~~G~--iaem~TGEGKTL~a~l~a~l~al~-----------------------g~~vhvvTv 129 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVAL-HDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------------------GKGVHVVTV 129 (273)
T ss_dssp HSC-CCCHHHHHHHHHH-HTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------------------SSCEEEEES
T ss_pred hce-EEehhHHHHHHHH-Hhhh--heeecCCCcchhHHHHHHHHHHhc-----------------------CCCceEEec
Confidence 576 8899998887665 5665 889999999999999988776543 336889999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHH-HHHHhcCCc---ccccCCCeeEEeec
Q 020452 132 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 207 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~ll~~~~~---~~~~l~~l~~lViD 207 (326)
+--||..=++++..+...+|++|++...+.......... .+||+.+|...+ .++|+.... .......+.+.|+|
T Consensus 130 NdyLA~RDae~m~~iy~~lGlsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvD 207 (273)
T d1tf5a3 130 NEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVID 207 (273)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEE
T ss_pred CccccchhhhHHhHHHHHcCCCccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEE
Confidence 999999999999999999999999999888876665555 489999999777 567765321 12234668999999
Q ss_pred chhHhh
Q 020452 208 EADRMI 213 (326)
Q Consensus 208 Eah~l~ 213 (326)
|+|.++
T Consensus 208 EvDsil 213 (273)
T d1tf5a3 208 EVDSIL 213 (273)
T ss_dssp THHHHH
T ss_pred cchhhh
Confidence 999887
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=2.9e-06 Score=75.85 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
...+.|..|+..++ .++-+++.||.|||||.+.. .++..+... ....+.++++++||..-
T Consensus 148 ~~~~~Q~~A~~~al-~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~------------------~~~~~~~I~l~ApTgkA 207 (359)
T d1w36d1 148 DEINWQKVAAAVAL-TRRISVISGGPGTGKTTTVA-KLLAALIQM------------------ADGERCRIRLAAPTGKA 207 (359)
T ss_dssp TSCCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHH-HHHHHHHHT------------------CSSCCCCEEEEBSSHHH
T ss_pred ccccHHHHHHHHHH-cCCeEEEEcCCCCCceehHH-HHHHHHHHH------------------HhccCCeEEEecCcHHH
Confidence 45778999999886 67788999999999998753 233333221 12345689999999998
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
+..+.+.......
T Consensus 208 A~~L~e~~~~~~~ 220 (359)
T d1w36d1 208 AARLTESLGKALR 220 (359)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8887777655443
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.69 E-value=3.5e-05 Score=66.33 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
+++|-|++++.. ....++|.|+.|||||.+.+--+...+ .... ...-+++|+++|+++
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll-~~~~------------------~~~~~ILvlt~tn~a 58 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLI-RGCG------------------YQARHIAAVTFTNKA 58 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHH-HHHC------------------CCGGGEEEEESSHHH
T ss_pred CcCHHHHHHHhC---CCCCEEEEeeCCccHHHHHHHHHHHHH-HhcC------------------CChhHEEEEeCcHHH
Confidence 478999999943 356799999999999988654444433 2210 112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
+..+...+.....
T Consensus 59 ~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 59 AREMKERVGQTLG 71 (306)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcC
Confidence 9999888877654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.45 E-value=0.00015 Score=62.72 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 020452 56 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 135 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 135 (326)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... ....-+++++++|+..
T Consensus 11 ~L~~eQ~~~v~~---~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~-------------------~~~p~~il~lt~t~~a 68 (318)
T d1pjra1 11 HLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-------------------HVAPWNILAITFTNKA 68 (318)
T ss_dssp TSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-------------------CCCGGGEEEEESSHHH
T ss_pred hCCHHHHHHHhC---CCCCEEEEecCCccHHHHHHHHHHHHHHcC-------------------CCCHHHeEeEeccHHH
Confidence 478999999964 356799999999999988755554443211 0112379999999999
Q ss_pred HHHHHHHHHHHHc
Q 020452 136 ALQVTDHLKEVAK 148 (326)
Q Consensus 136 ~~Q~~~~l~~~~~ 148 (326)
+..+...+.....
T Consensus 69 a~~~~~~~~~~~~ 81 (318)
T d1pjra1 69 AREMRERVQSLLG 81 (318)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhcc
Confidence 9999998877543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.002 Score=52.15 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHH---hcCC---cEEEEcCCCchHHHHHHHHH
Q 020452 57 PTPIQKACIPAAA---HQGK---DIIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 57 p~~~Q~~~i~~~l---~~g~---dvlv~apTGsGKT~~~~l~i 93 (326)
.+|||..++..+. .+++ .+++.||.|+|||..+...+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a 45 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHH
Confidence 3578877776542 3333 48999999999998764433
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.0057 Score=49.29 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=73.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++.||||..+-+...++.+++.+. +.++..++|.++..+..... ....+|+|||. .+..+ ++.
T Consensus 31 GgQvy~V~p~I~~~e~~~~~l~~~~p--~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEvG----iDv 99 (211)
T d2eyqa5 31 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 99 (211)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SCC
T ss_pred CCeEEEEEcCccchhhHHHHHHHhCC--ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhhhc----cCC
Confidence 56999999999999999999888865 57889999999877654433 35789999996 34444 778
Q ss_pred CCeeEEeecchhHhhhCCCHHHHHHHHHhCCC
Q 020452 199 HTLSFFVLDEADRMIENGHFRELQSIIDMLPM 230 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~~~~i~~il~~l~~ 230 (326)
.+..++|+.+||++. ..++..+..+..+
T Consensus 100 pnA~~iiI~~a~rfG----LaQLhQLRGRVGR 127 (211)
T d2eyqa5 100 PTANTIIIERADHFG----LAQLHQLRGRVGR 127 (211)
T ss_dssp TTEEEEEETTTTSSC----HHHHHHHHTTCCB
T ss_pred CCCcEEEEecchhcc----ccccccccceeee
Confidence 999999999999763 5667888777763
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.019 Score=47.03 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=30.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g---~dvlv~apTGsGKT~~~~l 91 (326)
.+|+++-.++.+.+.|+.. +.++ +.+++.||+|+|||..+.+
T Consensus 9 ~~~~dlig~~~~~~~L~~~----------------i~~~~~~~~~Ll~Gp~G~GKtt~a~~ 53 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANG----------------LSLGRIHHAYLFSGTRGVGKTSIARL 53 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHH----------------HHTTCCCSEEEEECSTTSSHHHHHHH
T ss_pred CCHHHccChHHHHHHHHHH----------------HHcCCCCeeEEEECCCCCcHHHHHHH
Confidence 4788888888888877542 1233 3489999999999987643
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=96.17 E-value=0.067 Score=41.51 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=62.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+-++||.|+|+.-|+.+.+.+... |+++..++|+.+..+....+ ....+|||+|- ++..| .+.
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~~----Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-----v~~~G----iDi 97 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG----LDI 97 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT----CCC
T ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCceEEEecccchHHHHHHHHHHHCCCeEEEEeee-----eeeee----ccC
Confidence 448999999999999998888875 89999999999977665444 35789999994 34444 788
Q ss_pred CCeeEEeecchhHh
Q 020452 199 HTLSFFVLDEADRM 212 (326)
Q Consensus 199 ~~l~~lViDEah~l 212 (326)
.+++++|+=.++..
T Consensus 98 p~V~~Vi~~~~~~~ 111 (174)
T d1c4oa2 98 PEVSLVAILDADKE 111 (174)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCcEEEEeccccc
Confidence 99999998777653
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.031 Score=44.50 Aligned_cols=31 Identities=16% Similarity=-0.068 Sum_probs=22.7
Q ss_pred HHHHHHHHHhc--CCcEEEEcCCCchHHHHHHH
Q 020452 61 QKACIPAAAHQ--GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 61 Q~~~i~~~l~~--g~dvlv~apTGsGKT~~~~l 91 (326)
|.+.+..+++. +.++++.||.|+|||..+..
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~ 34 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLE 34 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 45566666553 45899999999999977644
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.018 Score=46.53 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=28.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l~ 92 (326)
+|+++=.++.+++.|+.. +.++ .++++.||+|+|||.++-+.
T Consensus 13 ~~~d~ig~~~~~~~L~~~----------------~~~~~~~~~ll~Gp~G~GKTt~a~~l 56 (224)
T d1sxjb2 13 VLSDIVGNKETIDRLQQI----------------AKDGNMPHMIISGMPGIGKTTSVHCL 56 (224)
T ss_dssp SGGGCCSCTHHHHHHHHH----------------HHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred CHHHhcCCHHHHHHHHHH----------------HHcCCCCeEEEECCCCCCchhhHHHH
Confidence 466665666666665431 2333 37999999999999876443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.00 E-value=0.0097 Score=48.17 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=19.5
Q ss_pred CeeEEeecchhHhhhC-CCHHHHHHHHHhCC
Q 020452 200 TLSFFVLDEADRMIEN-GHFRELQSIIDMLP 229 (326)
Q Consensus 200 ~l~~lViDEah~l~~~-~~~~~i~~il~~l~ 229 (326)
..++|++|++|.+... .....+..++..+.
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~ 127 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLY 127 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHh
Confidence 4679999999988643 22344555555543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.028 Score=45.22 Aligned_cols=85 Identities=24% Similarity=0.260 Sum_probs=48.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc-HHHHHHHHHHHHHHHcCCCcE
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT-RELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt-~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
+++++|||+|||.+..-.+. ++. . .+..-+||-+-| |.=+ .++++.+++..++.
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~-~--------------------~g~kV~lit~Dt~R~gA---~eQL~~~a~~l~v~ 66 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFE-Q--------------------QGKSVMLAAGDTFRAAA---VEQLQVWGQRNNIP 66 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHH-T--------------------TTCCEEEECCCTTCHHH---HHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHH-HHH-H--------------------CCCcEEEEecccccccc---hhhhhhhhhhcCCc
Confidence 45699999999988655432 221 1 112234444444 3322 45566666667888
Q ss_pred EEEEEcCCCHHHHHHH-----HhcCCC-EEEeCcHHH
Q 020452 154 VVPIVGGMSTEKQERL-----LKARPE-LVVGTPGRL 184 (326)
Q Consensus 154 v~~~~g~~~~~~~~~~-----~~~~~~-IlV~Tp~~l 184 (326)
+.....+......... ..++.+ |+|=|+|+.
T Consensus 67 ~~~~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~ 103 (211)
T d2qy9a2 67 VIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRL 103 (211)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCG
T ss_pred ccccccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCc
Confidence 7766666654433221 123444 678999854
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.011 Score=48.47 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=31.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
.+|+++-.++.+.+.|+.+--. - ....++++.||.|+|||..+.
T Consensus 8 ~~~~diig~~~~~~~L~~~~~~------------~-~~~~~lll~Gp~G~GKTt~~~ 51 (252)
T d1sxje2 8 KSLNALSHNEELTNFLKSLSDQ------------P-RDLPHLLLYGPNGTGKKTRCM 51 (252)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTC------------T-TCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHccCcHHHHHHHHHHHHc------------C-CCCCeEEEECCCCCCHHHHHH
Confidence 3688888899999888754110 0 123469999999999997663
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.023 Score=45.83 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=29.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g--~dvlv~apTGsGKT~~~~l 91 (326)
++|+++=.++.+.+.|+.. +.++ .++++.||+|+|||.+..+
T Consensus 11 ~~~~divg~~~~~~~L~~~----------------i~~~~~~~lLl~Gp~G~GKttl~~~ 54 (227)
T d1sxjc2 11 ETLDEVYGQNEVITTVRKF----------------VDEGKLPHLLFYGPPGTGKTSTIVA 54 (227)
T ss_dssp SSGGGCCSCHHHHHHHHHH----------------HHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred CCHHHccCcHHHHHHHHHH----------------HHcCCCCeEEEECCCCCChhHHHHH
Confidence 3677777777777766542 2333 3699999999999976544
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.83 E-value=0.0049 Score=53.35 Aligned_cols=65 Identities=28% Similarity=0.297 Sum_probs=44.0
Q ss_pred HHHHHCCCC---CChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC
Q 020452 47 KSIYRLGFK---EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 123 (326)
Q Consensus 47 ~~l~~~g~~---~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (326)
..+.+.|+- ...+-+...+..++..+++++++|+||||||.. +-.++..+ ...
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i-----------------------~~~ 193 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFI-----------------------PKE 193 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGS-----------------------CTT
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhc-----------------------ccc
Confidence 345555543 234666667777778899999999999999965 34444433 123
Q ss_pred eEEEEEeCcHHH
Q 020452 124 LRALIITPTREL 135 (326)
Q Consensus 124 ~~~lil~Pt~~L 135 (326)
-+++.+--+.||
T Consensus 194 ~rivtiEd~~El 205 (323)
T d1g6oa_ 194 ERIISIEDTEEI 205 (323)
T ss_dssp CCEEEEESSCCC
T ss_pred cceeeccchhhh
Confidence 378888888886
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=95.79 E-value=0.015 Score=45.75 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=60.6
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.++++.-+..++..++.. |+++..++|+.+..+....+ ....+|||||- ++..| .+..
T Consensus 32 ~~~iif~~~~~~~~~~~~~l~~~----g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd-----v~~rG----iDip 98 (181)
T d1t5la2 32 ERTLVTTLTKKMAEDLTDYLKEA----GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LDIP 98 (181)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC-----CCSSS----CCCT
T ss_pred CeEEEEeehhhhhHHHHHHHHhC----CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh-----HHHcc----CCCC
Confidence 48999999999998888777655 89999999999987665444 35889999994 34444 7889
Q ss_pred CeeEEeecchhHh
Q 020452 200 TLSFFVLDEADRM 212 (326)
Q Consensus 200 ~l~~lViDEah~l 212 (326)
++++||.-+++..
T Consensus 99 ~v~~VI~~d~p~~ 111 (181)
T d1t5la2 99 EVSLVAILDADKE 111 (181)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEecCCcc
Confidence 9999998888753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.55 E-value=0.011 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=16.0
Q ss_pred CCcE-EEEcCCCchHHHHHHHHH
Q 020452 72 GKDI-IGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 72 g~dv-lv~apTGsGKT~~~~l~i 93 (326)
.+++ ++.+|||+|||.+..-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA 31 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLA 31 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 4454 569999999998765443
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=95.53 E-value=0.015 Score=51.79 Aligned_cols=68 Identities=28% Similarity=0.369 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHH---hcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 020452 56 EPTPIQKACIPAAA---HQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 131 (326)
Q Consensus 56 ~p~~~Q~~~i~~~l---~~g-~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 131 (326)
.|+-=|=++|..+. ..| ++.++.|-||||||++.. .++... +..+|||+|
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~-------------------------~rp~LVVt~ 64 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV-------------------------NKPTLVIAH 64 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH-------------------------TCCEEEECS
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh-------------------------CCCEEEEeC
Confidence 45556666655442 344 578999999999996652 223222 125899999
Q ss_pred cHHHHHHHHHHHHHHHcC
Q 020452 132 TRELALQVTDHLKEVAKG 149 (326)
Q Consensus 132 t~~L~~Q~~~~l~~~~~~ 149 (326)
+..+|.|+++.++.++..
T Consensus 65 n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 65 NKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp SHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 999999999999999653
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.059 Score=41.23 Aligned_cols=73 Identities=18% Similarity=0.394 Sum_probs=56.7
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|.++.-+.++++.+... ++.+..++|+.+..+....+. ....|+|+|- .+.+| .++.
T Consensus 28 ~k~iIF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td-----v~~rG----iDi~ 94 (162)
T d1fuka_ 28 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDVQ 94 (162)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCCC
T ss_pred CcEEEEEEEEchHHHHHHHHhhc----CceEEEeccCCchhhHHHHHHHHhhcccceeeccc-----ccccc----ccCC
Confidence 37999999999999998887665 788999999998876655443 4778999995 33444 7788
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
++++||.=+.
T Consensus 95 ~v~~VI~~d~ 104 (162)
T d1fuka_ 95 QVSLVINYDL 104 (162)
T ss_dssp SCSEEEESSC
T ss_pred CceEEEEecc
Confidence 8988886543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.05 Score=43.80 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
.++++.||+|+|||.....
T Consensus 34 ~~lll~Gp~G~GKTtl~~~ 52 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILA 52 (237)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHH
Confidence 4689999999999976543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.21 E-value=0.059 Score=43.31 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=46.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 020452 74 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 153 (326)
Q Consensus 74 dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 153 (326)
-+++++|||+|||.+..-.+ .++... +..-+||-+.|.-.+- .++++.+++.+++.
T Consensus 13 vi~lvGptGvGKTTTiAKLA-a~~~~~---------------------~~kV~lit~Dt~R~gA--~eQL~~~a~~l~i~ 68 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLA-KMFVDE---------------------GKSVVLAAADTFRAAA--IEQLKIWGERVGAT 68 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHHT---------------------TCCEEEEEECTTCHHH--HHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHC---------------------CCceEEEeecccccch--hHHHHHHhhhcCcc
Confidence 35679999999998865433 333221 1224555555433222 24455555556777
Q ss_pred EEEEEcCCCHHHH-----HHHHhcCCC-EEEeCcHH
Q 020452 154 VVPIVGGMSTEKQ-----ERLLKARPE-LVVGTPGR 183 (326)
Q Consensus 154 v~~~~g~~~~~~~-----~~~~~~~~~-IlV~Tp~~ 183 (326)
+.....+...... .....++.+ |+|=|+|+
T Consensus 69 ~~~~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr 104 (213)
T d1vmaa2 69 VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 104 (213)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ccccCCCCcHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 7655554443321 111223444 77999984
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.57 E-value=0.049 Score=43.58 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLP 92 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~ 92 (326)
++-+++++|||+|||.+..-.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKL 26 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKL 26 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 445678999999999886543
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.2 Score=38.40 Aligned_cols=75 Identities=7% Similarity=0.170 Sum_probs=57.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.|+++.-+..++..+... ++.+..++|+.+..+....+. ...+|+|||.- +.++ .++
T Consensus 32 ~~k~iVF~~~~~~~~~l~~~L~~~----g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~-----~~~G----id~ 98 (171)
T d1s2ma2 32 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-----LTRG----IDI 98 (171)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-----SSSS----CCC
T ss_pred CCceEEEEeeeehhhHhHHhhhcc----cccccccccccchhhhhhhhhhcccCccccccchhH-----hhhc----ccc
Confidence 348999999999999988888876 788999999998776655443 47889999962 3333 778
Q ss_pred CCeeEEeecchh
Q 020452 199 HTLSFFVLDEAD 210 (326)
Q Consensus 199 ~~l~~lViDEah 210 (326)
.+++++|.=++.
T Consensus 99 ~~v~~VI~~d~p 110 (171)
T d1s2ma2 99 QAVNVVINFDFP 110 (171)
T ss_dssp TTEEEEEESSCC
T ss_pred ceeEEEEecCCc
Confidence 899988865543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.49 E-value=0.03 Score=45.06 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=10.9
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPI 93 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~i 93 (326)
+++++|||+|||.+..-.+
T Consensus 15 i~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEECSCCC----HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5668999999998865443
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.09 Score=40.37 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=54.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|+++.-+..+++.+.+. +.++..++|+.+..+....+. ....|+|+|-- +..+ .++.
T Consensus 28 ~k~iIF~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~-----~~~G----id~~ 94 (168)
T d1t5ia_ 28 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGRG----MDIE 94 (168)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CSTT----CCGG
T ss_pred CeEEEEEeeeecchhhhhhhccc----cccccccccccchhhhhhhhhhhccccceeeecccc-----ccch----hhcc
Confidence 37999999999998888877664 788999999998876654433 46889999932 2232 6677
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
.++++|.=+.
T Consensus 95 ~~~~vi~~~~ 104 (168)
T d1t5ia_ 95 RVNIAFNYDM 104 (168)
T ss_dssp GCSEEEESSC
T ss_pred cchhhhhhhc
Confidence 7887776554
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.1 Score=40.10 Aligned_cols=73 Identities=18% Similarity=0.372 Sum_probs=56.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|.++.-+..++..++.. +..+..++|+.........+ ....+|+|+|- .+.+| .++.
T Consensus 35 ~k~iiF~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td-----~~~rG----iDi~ 101 (168)
T d2j0sa2 35 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDVP 101 (168)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCCT
T ss_pred CceEEEeeeHHHHHHHHHHhhhc----ccchhhhhhhhhHHHHHHHHHHHhcCCccEEeccc-----hhccc----cccc
Confidence 48999999999999988887765 77888999999887665444 34679999995 34444 7888
Q ss_pred CeeEEeecch
Q 020452 200 TLSFFVLDEA 209 (326)
Q Consensus 200 ~l~~lViDEa 209 (326)
++++||.=++
T Consensus 102 ~v~~VIn~d~ 111 (168)
T d2j0sa2 102 QVSLIINYDL 111 (168)
T ss_dssp TEEEEEESSC
T ss_pred CcceEEEecC
Confidence 9998885443
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.1 Score=41.42 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=53.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHH----hcCCCEEEeCcHHHHHHHhcCCcccccC
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 198 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~ll~~~~~~~~~l 198 (326)
+.++||.++|+.-+..++..+... ++.+..++|+.........+ ....+|+|+|- .+..+ .++
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd-----~~~~G----iD~ 96 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGMG----INK 96 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCTT----TCC
T ss_pred CCCEEEEEeeehhhHHhhhhhccC----CceeEEecCCCcHHHHHHHHHHHhcccceEEEecc-----hhhhc----cCC
Confidence 347999999999999888877665 78899999999876654433 34778999995 23333 778
Q ss_pred CCeeEEee
Q 020452 199 HTLSFFVL 206 (326)
Q Consensus 199 ~~l~~lVi 206 (326)
.++++||.
T Consensus 97 p~v~~VI~ 104 (200)
T d1oywa3 97 PNVRFVVH 104 (200)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 88888874
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.73 E-value=0.1 Score=39.36 Aligned_cols=71 Identities=17% Similarity=0.394 Sum_probs=53.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHh----cCCCEEEeCcHHHHHHHhcCCcccccCC
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 199 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~ll~~~~~~~~~l~ 199 (326)
.++||.|++++-+.++++.++.. ++.+..++|+....+....+. ....|+|+|-- +..| .++.
T Consensus 29 ~k~IIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~-----~~~G----id~~ 95 (155)
T d1hv8a2 29 FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MSRG----IDVN 95 (155)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HHHH----CCCS
T ss_pred CCEEEEECchHHHHHHHhhhccc----ccccccccccchhhhhhhhhhhhhcccceeeeehhH-----Hhhh----hhhc
Confidence 47999999999999888888765 788999999988776655443 46789999942 2222 6677
Q ss_pred CeeEEeec
Q 020452 200 TLSFFVLD 207 (326)
Q Consensus 200 ~l~~lViD 207 (326)
.++++|.=
T Consensus 96 ~v~~Vi~~ 103 (155)
T d1hv8a2 96 DLNCVINY 103 (155)
T ss_dssp CCSEEEES
T ss_pred cCcEEEEe
Confidence 78888743
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.066 Score=43.27 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=31.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHH
Q 020452 34 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 34 ~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~l 91 (326)
.+|+++--.+.+.+.|... +...... ..++++.||+|+|||.++-+
T Consensus 6 ~~~~divGqe~~~~~l~~~------------i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~ 54 (238)
T d1in4a2 6 KSLDEFIGQENVKKKLSLA------------LEAAKMRGEVLDHVLLAGPPGLGKTTLAHI 54 (238)
T ss_dssp SSGGGCCSCHHHHHHHHHH------------HHHHHHHTCCCCCEEEESSTTSSHHHHHHH
T ss_pred CcHHHcCChHHHHHHHHHH------------HHHHHhcCCCCCeEEEECCCCCcHHHHHHH
Confidence 3788888788887776542 1111112 35899999999999987643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.06 E-value=0.05 Score=48.17 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=30.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~-~g~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
..++++|++++.....+++ ++. .+.=+++.||||||||.+. ..++..+
T Consensus 134 ~~~l~~LG~~~~~~~~l~~----------------l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~ 182 (401)
T d1p9ra_ 134 RLDLHSLGMTAHNHDNFRR----------------LIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 182 (401)
T ss_dssp CCCGGGSCCCHHHHHHHHH----------------HHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred chhhhhhcccHHHHHHHHH----------------HHhhhhceEEEEcCCCCCccHHH-HHHhhhh
Confidence 3456777777666665543 332 3345788999999999775 3355544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.15 E-value=0.42 Score=38.14 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQ 95 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~ 95 (326)
.|.-+++.+++|+|||...+-.+.+
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567899999999999766443333
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.12 E-value=0.08 Score=42.56 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=30.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~l 91 (326)
+|+++-.++.+.+.|... +.. ....++++.||+|+|||.++-.
T Consensus 22 ~~~diig~~~~~~~l~~~------------i~~--~~~~~lll~Gp~G~GKTtla~~ 64 (231)
T d1iqpa2 22 RLDDIVGQEHIVKRLKHY------------VKT--GSMPHLLFAGPPGVGKTTAALA 64 (231)
T ss_dssp STTTCCSCHHHHHHHHHH------------HHH--TCCCEEEEESCTTSSHHHHHHH
T ss_pred CHHHccCcHHHHHHHHHH------------HHc--CCCCeEEEECCCCCcHHHHHHH
Confidence 688888888887776542 111 1235799999999999977643
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.91 E-value=0.033 Score=50.09 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~ 90 (326)
.+|+++.||||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 5699999999999998763
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.34 E-value=0.18 Score=40.62 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=29.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~l~~---g~dvlv~apTGsGKT~~~~ 90 (326)
+|+++--.+.+.+.|+.. +...... -.++++.||+|+|||..+-
T Consensus 7 ~~ddivGq~~~~~~L~~~------------i~~~~~~~~~~~~~Ll~GPpG~GKTtla~ 53 (239)
T d1ixsb2 7 TLDEYIGQERLKQKLRVY------------LEAAKARKEPLEHLLLFGPPGLGKTTLAH 53 (239)
T ss_dssp SGGGSCSCHHHHHHHHHH------------HHHHTTSSSCCCCEEEECCTTSCHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHH------------HHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 677776677777766442 2222111 2589999999999997764
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=91.28 E-value=0.24 Score=43.62 Aligned_cols=67 Identities=25% Similarity=0.399 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHH---HhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 020452 57 PTPIQKACIPAA---AHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 132 (326)
Q Consensus 57 p~~~Q~~~i~~~---l~~g~-dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 132 (326)
|+.=|-++|..+ +..|. ...+.|.+||+|+++.. .+.... +..+|||+|+
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~-------------------------~rp~LvVt~~ 62 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL-------------------------GRPALVLAPN 62 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH-------------------------TCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHh-------------------------CCCEEEEeCC
Confidence 444555555543 34565 46889999999995532 222211 1158999999
Q ss_pred HHHHHHHHHHHHHHHcC
Q 020452 133 RELALQVTDHLKEVAKG 149 (326)
Q Consensus 133 ~~L~~Q~~~~l~~~~~~ 149 (326)
...|.++++.+..++..
T Consensus 63 ~~~A~~l~~dL~~~l~~ 79 (408)
T d1c4oa1 63 KILAAQLAAEFRELFPE 79 (408)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999998653
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.031 Score=46.36 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=33.1
Q ss_pred ccccccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRL--GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~--g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~~ 90 (326)
--+|++++-.+.+.+.+.+. -+..+..+|..- . ...+.+++.||+|+|||+.+-
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~-~~~~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---G-KIPKGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC---------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---C-CCCCeEEeeCCCCCCccHHHH
Confidence 34899999888888777542 011111111111 1 234679999999999997753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.88 E-value=0.05 Score=46.34 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~ 90 (326)
..+.+++.||||+|||..+-
T Consensus 48 ~~~~iLl~GPpG~GKT~lAk 67 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIAR 67 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.16 Score=41.14 Aligned_cols=56 Identities=14% Similarity=-0.046 Sum_probs=31.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH--H--hcCCcEEEEcCCCchHHHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA--A--HQGKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~--l--~~g~dvlv~apTGsGKT~~~~l 91 (326)
+|+++-..+...+.|+..=- .........+... . .....+++.||+|+|||.++-.
T Consensus 12 ~~~dlig~~~~~~~L~~~l~-~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~ 71 (253)
T d1sxja2 12 NLQQVCGNKGSVMKLKNWLA-NWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71 (253)
T ss_dssp SGGGCCSCHHHHHHHHHHHH-THHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHH-hhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHH
Confidence 68999999998888765200 0000000000000 0 0124699999999999976543
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.17 Score=44.92 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 147 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 147 (326)
.+.++|.|..|||||.+..--++..++...... .....-..-.+|+|+=|+.-|.++.+++...+
T Consensus 16 ~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~-----------~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L 80 (485)
T d1w36b1 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSA-----------AFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (485)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSS-----------SCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCchHHHHHHHHHHHHHHhhCcccc-----------cccCCCCcccEeEeccHHHHHHHHHHHHHHHH
Confidence 457899999999999887666666553321000 00000011259999999998888888776554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.42 E-value=0.052 Score=44.69 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=32.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q 020452 33 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAA-AHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 33 ~~~f~~l~l~~~i~~~l~~~g~~~p~~~Q~~~i~~~-l~~g~dvlv~apTGsGKT~~~ 89 (326)
-.+|+++.-.+.+.+.|++. + .+ -.+.+.+... ....+.+++.||+|+|||..+
T Consensus 5 ~~~~~di~G~~~~k~~l~~~-i-~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 5 KVTFKDVAGAEEAKEELKEI-V-EF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp SCCGGGCCSCHHHHHHHHHH-H-HH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCcHHHHccHHHHHHHHHHH-H-HH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 36899998888877777542 0 00 0011112221 012356999999999999775
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.32 E-value=0.49 Score=41.26 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
..|+++.|++|.|||...
T Consensus 43 k~n~llvG~~GvGKtaiv 60 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIV 60 (387)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCCCeEECCCCCCHHHHH
Confidence 357999999999999664
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.29 E-value=0.14 Score=43.23 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=40.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 181 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp 181 (326)
+.+++|+||+..-+++++..+++. |.+|..++|.+....+........+|||+|.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~----g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCeEEEEcCcCcHhHHhhhhcCCcCEEEEec
Confidence 347999999999999999888775 6789999999887777777777889999995
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.13 Score=38.87 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=18.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l~il~~~ 97 (326)
+++++.||+|+|||... ..++..+
T Consensus 2 k~v~ItG~~GtGKTtl~-~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLI-HKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHH-HHHHHHH
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHH
Confidence 67999999999999744 4445544
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.57 E-value=0.13 Score=38.09 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=48.6
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHHHHHHHHhcCCCEEEeCcHHHHHHHhcCCcccccCCCeeE
Q 020452 124 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 203 (326)
Q Consensus 124 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~ 203 (326)
.++||.|+|+.-|+++++.|+.. ++++..++++...... .....+|+|||- .+..+ .+ .++++
T Consensus 36 ~k~IVFc~t~~~ae~la~~L~~~----G~~~~~~H~~~~~~~~---~~~~~~vlvaTd-----~~~~G----iD-~~v~~ 98 (138)
T d1jr6a_ 36 GRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSVI---PTNGDVVVVATD-----ALMTG----FT-GDFDS 98 (138)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCEEEEECTTCCSCCC---TTSSCEEEEESS-----SSCSS----SC-CCBSE
T ss_pred CCEEEEeCcHHHHHHHHHHHhcc----ccchhhhhccchhhhh---hhhhcceeehhH-----HHHhc----cc-cccce
Confidence 37999999999999999999876 8899999998875332 345678999994 33333 44 45766
Q ss_pred Ee
Q 020452 204 FV 205 (326)
Q Consensus 204 lV 205 (326)
||
T Consensus 99 Vi 100 (138)
T d1jr6a_ 99 VI 100 (138)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.56 E-value=0.1 Score=42.51 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
.++++.||+|+|||.+.
T Consensus 44 ~~lll~GppGtGKT~l~ 60 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL 60 (276)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999665
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.33 E-value=0.044 Score=45.37 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=28.9
Q ss_pred ccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 020452 35 AWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 35 ~f~~l~l~~~i~~~l~~~---g~~~p~~~Q~~~i~~~l~~g~dvlv~apTGsGKT~~~ 89 (326)
+|++.+--+.+.+.+++. .+..|.-++...+ .-.+.+++.||+|||||...
T Consensus 2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~----~~~~giLL~GppGtGKT~l~ 55 (258)
T d1e32a2 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV----KPPRGILLYGPPGTGKTLIA 55 (258)
T ss_dssp CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCC----CCCCEEEEECCTTSSHHHHH
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCC----CCCceeEEecCCCCCchHHH
Confidence 577776666666666552 1111111111110 12357999999999999764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.76 E-value=0.13 Score=38.00 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~~l 91 (326)
.+++++.||+|+|||..+-.
T Consensus 2 ~k~I~l~G~~GsGKSTvak~ 21 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQ 21 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999976643
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=0.2 Score=44.09 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~~l~il~~~~ 98 (326)
..+++++.|+||+|||.+. ..++..+.
T Consensus 49 ~~~H~~I~G~tGsGKT~~l-~~li~~~~ 75 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLL-RELAYTGL 75 (433)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred ccceEEEEeCCCCcHHHHH-HHHHHHHH
Confidence 4578999999999999764 44444443
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=88.57 E-value=0.2 Score=37.15 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=23.2
Q ss_pred CEEEeCcHHHHHHHhcCCcccccCCCeeEEeecchhHhh
Q 020452 175 ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 213 (326)
Q Consensus 175 ~IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah~l~ 213 (326)
.+.+.....+.+.+... ....+.+++.+||++-+.
T Consensus 58 ~~~~~~~~~~~~~~~~~----~~~~~~dvI~IDE~QFf~ 92 (139)
T d2b8ta1 58 SVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFFD 92 (139)
T ss_dssp CEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGSC
T ss_pred eEEeccchhhHHHHHhh----ccccCcCEEEechhhhcc
Confidence 35566666666666433 224578899999999763
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.30 E-value=1.5 Score=34.18 Aligned_cols=32 Identities=6% Similarity=0.002 Sum_probs=22.5
Q ss_pred EEEeCcHHHHHHHhcCCcccccCCCeeEEeecchh
Q 020452 176 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 176 IlV~Tp~~l~~ll~~~~~~~~~l~~l~~lViDEah 210 (326)
|.-+||+.+..++.... .....+..+-++|.+
T Consensus 155 IgatT~eey~~~~e~d~---aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 155 VGATTLDEYRQYIEKDA---ALERRFQKVFVAEPS 186 (195)
T ss_dssp EEEECHHHHHHHTTTCH---HHHTTEEEEECCCCC
T ss_pred EecCCHHHHHHHHHcCH---HHHhcCCEeecCCCC
Confidence 34678898887776542 345678888888875
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.62 E-value=0.14 Score=44.55 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
-.++++.||||+|||..+
T Consensus 68 ~~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CcceeeeCCCCccHHHHH
Confidence 368999999999999776
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=86.30 E-value=0.15 Score=37.61 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 020452 75 IIGAAETGSGKTLAF 89 (326)
Q Consensus 75 vlv~apTGsGKT~~~ 89 (326)
++++|++|||||..+
T Consensus 5 Iii~G~pGsGKTTla 19 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.22 E-value=0.12 Score=42.30 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
.+++.||+|+|||..+
T Consensus 34 ~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=85.90 E-value=0.17 Score=38.07 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
+.++++.||+|+|||..+
T Consensus 5 ~~~I~i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMA 22 (174)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 567999999999999765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.67 E-value=0.16 Score=38.49 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 020452 72 GKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 72 g~dvlv~apTGsGKT~~~ 89 (326)
-+.+++.||+|+|||..+
T Consensus 7 ~K~I~i~G~~GsGKTTla 24 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLV 24 (192)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 367999999999999665
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.99 E-value=0.15 Score=41.66 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 020452 73 KDIIGAAETGSGKTLAF 89 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~ 89 (326)
+.+++.||+|+|||..+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 36899999999999775
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=84.66 E-value=0.19 Score=37.52 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 020452 74 DIIGAAETGSGKTLAF 89 (326)
Q Consensus 74 dvlv~apTGsGKT~~~ 89 (326)
-+++.||+|||||..+
T Consensus 4 lI~i~G~~GsGKTTva 19 (176)
T d2bdta1 4 LYIITGPAGVGKSTTC 19 (176)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999765
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=84.66 E-value=0.96 Score=33.95 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=24.1
Q ss_pred CCeeEEeecchhHhhhCCC--HHHHHHHHHhCC
Q 020452 199 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 229 (326)
Q Consensus 199 ~~l~~lViDEah~l~~~~~--~~~i~~il~~l~ 229 (326)
...++||+||+-..++.++ .+.+..+++.-|
T Consensus 93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp 125 (157)
T d1g5ta_ 93 PLLDMVVLDELTYMVAYDYLPLEEVISALNARP 125 (157)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC
T ss_pred CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 4478999999999988776 566777776655
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=84.02 E-value=0.29 Score=36.58 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFG 90 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~ 90 (326)
.++++.||+|||||..+-
T Consensus 5 ~~I~i~G~pGsGKTTia~ 22 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGK 22 (173)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 578999999999997653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=83.42 E-value=0.2 Score=37.74 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 020452 71 QGKDIIGAAETGSGKTLAF 89 (326)
Q Consensus 71 ~g~dvlv~apTGsGKT~~~ 89 (326)
.|+-+++.||+|||||..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4666789999999999764
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.28 E-value=0.58 Score=44.20 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=46.4
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCCC--CC--hHHHHHHHHHHHhcC--Cc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFK--EP--TPIQKACIPAAAHQG--KD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~~--~p--~~~Q~~~i~~~l~~g--~d 74 (326)
.|+|-+|+.++..|+..... - .++..++..+..... .| ..+=..|+..++..+ +.
T Consensus 67 ~iYT~~G~iLiavNP~k~l~--------------i-----y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQs 127 (712)
T d1d0xa2 67 LIYTYSGLFLVAVNPFKRIP--------------I-----YTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQS 127 (712)
T ss_dssp CCEEEETTEEEEECCSSCCS--------------C-----CSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEE
T ss_pred CceeeECCEEEEECCCCCCC--------------C-----CCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCce
Confidence 47889999999998876331 0 123333333322221 22 233345565655444 57
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRLL 98 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~~ 98 (326)
+|+.|.+|+|||.+.-. +++.+.
T Consensus 128 IiisGeSGaGKTe~~k~-il~yL~ 150 (712)
T d1d0xa2 128 LLITGESGAGKTENTKK-VIQYLA 150 (712)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EEEeCCCCCCHHHHHHH-HHHHHH
Confidence 99999999999998744 444443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=83.23 E-value=0.55 Score=34.80 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=15.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+.+.|+.|||||... -.++..+
T Consensus 5 i~itG~~GSGKTTL~-~~L~~~l 26 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLL-KKLIPAL 26 (170)
T ss_dssp EEEECCTTSCHHHHH-HHHHHHH
T ss_pred EEEEcCCCCCHHHHH-HHHHHHH
Confidence 578999999999543 3344443
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=80.78 E-value=0.49 Score=35.47 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 020452 73 KDIIGAAETGSGKTLAFGL 91 (326)
Q Consensus 73 ~dvlv~apTGsGKT~~~~l 91 (326)
+++++.|++|+|||...-.
T Consensus 1 k~I~liG~~GsGKsTi~k~ 19 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARA 19 (161)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5789999999999977633
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=80.32 E-value=0.98 Score=42.57 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=44.9
Q ss_pred CccccccceeeecCCCCcchhhccCcccccccccccccCCCCHHHHHHHHHCCC----CCChHHHHHHHHHHHhc--CCc
Q 020452 1 MFHTNCGTVVVVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGF----KEPTPIQKACIPAAAHQ--GKD 74 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~i~~~l~~~g~----~~p~~~Q~~~i~~~l~~--g~d 74 (326)
.++|-+|++++..|+..... . .++..++..+.... .++..+=..|+..+... .+.
T Consensus 33 ~iYT~~G~iLiavNP~k~l~--~-----------------y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~ 93 (710)
T d1br2a2 33 LIYTYSGLFCVVINPYKQLP--I-----------------YSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQS 93 (710)
T ss_dssp CCEEECSSSEEEECCSSCCT--T-----------------CCHHHHHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEE
T ss_pred CceeeECCEEEEECCCCCCC--C-----------------CCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcE
Confidence 47888999999988876331 0 12222222221111 12233445566666544 357
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 020452 75 IIGAAETGSGKTLAFGLPIMQRL 97 (326)
Q Consensus 75 vlv~apTGsGKT~~~~l~il~~~ 97 (326)
+|+.|.+|+|||.+.-. +++.+
T Consensus 94 IiisGeSGaGKTe~~k~-il~yL 115 (710)
T d1br2a2 94 ILCTGESGAGKTENTKK-VIQYL 115 (710)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEEeCCCCCHHHHHHH-HHHHH
Confidence 99999999999998644 44444
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.32 E-value=5.9 Score=32.04 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=50.7
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCHH--------HH----HHHHhcCCCEEEeCcHHHHHHHhc
Q 020452 123 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE--------KQ----ERLLKARPELVVGTPGRLWELMSG 190 (326)
Q Consensus 123 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~--------~~----~~~~~~~~~IlV~Tp~~l~~ll~~ 190 (326)
+.++||.+.+++-+..+++.+.+. ++++..+.|..... .+ .......+.|+|+|- .+..
T Consensus 161 ~~k~iiF~~~~~~~~~~~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~-----~~~~ 231 (286)
T d1wp9a2 161 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 231 (286)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCcEEEEeCcHHhHHHHHHHHHHc----CCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEcc-----ceec
Confidence 458999999999998888877664 67777777754321 11 122234678999993 2333
Q ss_pred CCcccccCCCeeEEeecchh
Q 020452 191 GEKHLVELHTLSFFVLDEAD 210 (326)
Q Consensus 191 ~~~~~~~l~~l~~lViDEah 210 (326)
| .++..+++||.=+.+
T Consensus 232 G----ld~~~~~~Vi~~d~~ 247 (286)
T d1wp9a2 232 G----LDVPEVDLVVFYEPV 247 (286)
T ss_dssp G----GGSTTCCEEEESSCC
T ss_pred c----ccCCCCCEEEEeCCC
Confidence 3 778889999865544
|