Citrus Sinensis ID: 020454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcccccEEEEEEcccccccccEEEcccccccccEEEEEEEcccccccEEEEEEcccEEEEEEcccccEEEEEEcccccccccccccEEEEEEEEEEEEEEcccccEEEEEccccEEEEEEccccEEEEcccccEEEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccEEEEEEEEEEcccccEEEEEEcccEEEEEEcccccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccEEEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEcccccccccEEEEEccccEEEEEEEccccccccHHHHccccccHHccEEEEEEcccccccEEEEEEcccEEEEEEccccccEEEEccccccccccccccEEEEEEEccccccccccccEEEEEEcccEEEEEEccccccccccccccccEEEEccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccccccccccEEEEcEEEEccccccEEEEEccccEEEEEccccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEEEEccc
Coil and Loop (DISEMBL)
mprtttlecpgcpplraltfdSLGLIKVIEArgehggvpkvverwgdphssncvlaasiddsqndpLLAVARKNgltdilnplnGDLRVAIsnagdsgaqpeddgivGLHLFKrqreesssrsrtlltcttkgkasmrsIEVTKVSAESscstvkswnvcasgtiafskvdisekfslfggkgvevnvwdldkcekiwtakpppknslgiftptwftsaaflsiddhrkfvagtndhqvrlydtsaqrrpvmsfdfretpikavaeepdsfniyigngsgdlasvdirTGKLLGCfigkcsgsirsiarhptlpiiascgfleaas
Flexible Loop (DISEMBL)
mprtttlecpgcpplralTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAgdsgaqpeddGIVGLHLFkrqreesssrsrtlltcttkgkasmrsievtkvsaesscstvkswnVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWtakpppknslGIFTPTWFTSAAFLSIDDHRKFVAGtndhqvrlydtsaqrrpvmsfDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGsirsiarhptlpiiascgfleaas
Low Complexity Region (SEG)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKrqreesssrsrtlltcttKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS
Disordered region (IsUnstruct)
*******ECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI**************IVGLHL**************************************SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL****
Disordered Region (DISOPRED)
*PRTTTLECPGCPPLRALTFDSLGLIKVIEARGE**G*********DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA*
Disordered Region (DISEMBL)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR************LTCTTKGKASMRSIE*************KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS
Disordered Region (DISPRO)
*****TLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q58D06	385	WD repeat-containing prot	yes	no	0.426	0.361	0.402	2e-22
Q6RFH5	385	WD repeat-containing prot	yes	no	0.426	0.361	0.388	4e-21
Q8VCG3	384	WD repeat-containing prot	yes	no	0.423	0.359	0.391	8e-21
Q54FW9	508	WD repeat-containing prot	yes	no	0.432	0.277	0.287	5e-11
O94698	387	Ribosome biogenesis prote	yes	no	0.349	0.294	0.267	1e-05
A3LVX0	430	Ribosome biogenesis prote	yes	no	0.248	0.188	0.333	1e-05
A5DKC4	398	Ribosome biogenesis prote	N/A	no	0.426	0.349	0.254	0.0001
Q6CKH7	436	Ribosome biogenesis prote	yes	no	0.435	0.325	0.256	0.0006

>sp|Q58D06|WDR74_BOVIN WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 5/144 (3%)

Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct: 149 GGKENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLP--ESQKLVTCTGYHQ 206

Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
           VR+YD  S QRRPV+   + E P+ AV   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct: 207 VRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query: 298 GKCSGSIRSIARHPTLPIIASCGF 321
           G  +GS+R +  HP+ P++ASCG 
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGL 289

Bos taurus (taxid: 9913)

>sp|Q6RFH5|WDR74_HUMAN WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 5/144 (3%)

Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct: 149 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 206

Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
           VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct: 207 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query: 298 GKCSGSIRSIARHPTLPIIASCGF 321
           G  +GS+R +  HP+ P++ASCG 
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGL 289

Homo sapiens (taxid: 9606)

>sp|Q8VCG3|WDR74_MOUSE WD repeat-containing protein 74 OS=Mus musculus GN=Wdr74 PE=2 SV=1

 Score =  101 bits (251), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 5/143 (3%)

Query: 181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct: 150 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLP--GSQKLVTCTGYHQV 207

Query: 240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
           R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct: 208 RVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 267

Query: 299 KCSGSIRSIARHPTLPIIASCGF 321
             +GS+R +  HP+ P++ASCG 
Sbjct: 268 -LAGSVRGLQCHPSKPLLASCGL 289

Mus musculus (taxid: 10090)

>sp|Q54FW9|Y0555_DICDI WD repeat-containing protein DDB_G0290555 OS=Dictyostelium discoideum GN=DDB_G0290555 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 12/153 (7%)

Query: 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232
           ++KF+ FGGK V + +WDL+K  K ++AK    + L +  P       +++ D   K + 
Sbjct: 173 NDKFA-FGGKDVNLTIWDLEKQVKTYSAK-FKHDFLNLQEPVSINVVKYMNDD---KILI 227

Query: 233 GTNDHQVRLYD--TSAQRRPVMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIR 288
           G+ D +++ YD  +   R   +   F + PI+++    + + +  Y  +  G +   D+R
Sbjct: 228 GS-DFRIKAYDLRSKTNRSSFLDVSFSKHPIQSIQYTNQKEHY-FYASDSIGKVFCYDVR 285

Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321
           T + +G F    +GS++ IA HPTLP++A+ G 
Sbjct: 286 TSRQVGSF-KDSAGSVKDIAIHPTLPLLATVGL 317

Dictyostelium discoideum (taxid: 44689)

>sp|O94698|NSA1_SCHPO Ribosome biogenesis protein nsa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsa1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 13/127 (10%)

Query: 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL----------SIDDHR---KFV 231
           E+ +W  +   K++  K    +SL +    W T   F           S DD      F 
Sbjct: 167 ELELWRTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTEDIINVIDGKSEDDESLCFHFA 226

Query: 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291
             T+  Q+R YDT   RRPV +FD   +P+  V   P    +Y  +    ++  D    K
Sbjct: 227 TITHYGQLRFYDTKHGRRPVSTFDVSTSPLSHVGLLPSIKLLYFADKRAQISIFDHSKKK 286

Query: 292 LLGCFIG 298
           ++G F G
Sbjct: 287 VIGRFQG 293

Involved in the biogenesis of the 60S ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A3LVX0|NSA1_PICST Ribosome biogenesis protein NSA1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=NSA1 PE=3 SV=2

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--KFVAGT 234
            +F  + VE N     K E ++TAK    + L +  P W T   F +    +  KF+  T
Sbjct: 185 EIFDTENVENNF----KSEVVFTAKNVKNDHLDLRVPVWITKIRFFTEQPEKGYKFITAT 240

Query: 235 NDHQVRLYDTSAQRRPVMSFDFRETPI 261
           +  Q+R+YDT+  RRPV  F   + PI
Sbjct: 241 HYGQIRVYDTNHGRRPVRDFTVCQKPI 267

Involved in the biogenesis of the 60S ribosomal subunit.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

>sp|A5DKC4|NSA1_PICGU Ribosome biogenesis protein NSA1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=NSA1 PE=3 SV=2

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 30/169 (17%)

Query: 107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV--------KSWN 158
           V LH+F        S    L+     GKA++  +   K + E  C  V        +++ 
Sbjct: 98  VSLHVF--------SEFDALVMGLDSGKAAL--VGFHKNTLEKECQIVDLPGGKPIEAFE 147

Query: 159 VCAS--GTIAF----SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212
            C S  G  A+    + + I + F +  GK V++    L+  E ++ AK    + L +  
Sbjct: 148 ACPSQPGVFAYGGKENDLRIVKMFEV--GKKVKL----LESVEVLFAAKNVKNDHLDLRV 201

Query: 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261
           P W T   F+S  +  K +  T   Q+R+YDT+  R+P   +     PI
Sbjct: 202 PIWITKIRFISSKNSYKLITATRYGQLRIYDTNHGRKPAHDYQVCTNPI 250

Involved in the biogenesis of the 60S ribosomal subunit.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|Q6CKH7|NSA1_KLULA Ribosome biogenesis protein NSA1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NSA1 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA- 161
           +D  V L+L K+     S+++   L  T  G  ++  +++      +  S + S  + A 
Sbjct: 121 EDQFVELYLIKK-----SAKNPIFLAATKSGNVTIIEVDL----HSTKISKIASHKIKAP 171

Query: 162 SGTIAFSKVDISEKFSL-FGGKGVEVNVW----DLDKCEKIWTAKPPPKNSLGIFTPTWF 216
              +    +D S+KF + +GG+   V +     D  +   IW AK  P +++G+  P W 
Sbjct: 172 VEFVTLYDLDKSDKFVMAYGGEENLVRLIELSSDFKEISDIWAAKNVPFDNIGLRVPAWD 231

Query: 217 TSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQR-RPVMS 253
            +  FL  + +    F+  T   Q+R Y T+A+  RPV S
Sbjct: 232 VALRFLESEKNGVYNFITITKYAQLRKYSTNAEDCRPVKS 271

Involved in the biogenesis of the 60S ribosomal subunit.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
225427147	421	PREDICTED: WD repeat-containing protein	0.984	0.762	0.736	1e-138
224133888	365	predicted protein [Populus trichocarpa]	0.972	0.868	0.742	1e-135
307136107	422	WD-repeat protein [Cucumis melo subsp. m	0.984	0.760	0.698	1e-129
356560339	550	PREDICTED: WD repeat-containing protein	0.984	0.583	0.683	1e-129
224119618	355	predicted protein [Populus trichocarpa]	0.941	0.864	0.711	1e-127
356520388	445	PREDICTED: WD repeat-containing protein	0.978	0.716	0.679	1e-126
255540311	406	WD-repeat protein, putative [Ricinus com	0.972	0.780	0.678	1e-126
15218889	468	WD40 domain-containing protein [Arabidop	0.984	0.685	0.621	1e-113
297845852	471	transducin family protein [Arabidopsis l	0.984	0.681	0.624	1e-113
357122699	497	PREDICTED: WD repeat-containing protein	0.978	0.641	0.575	1e-107

>gi|225427147|ref|XP_002277288.1| PREDICTED: WD repeat-containing protein 74 [Vitis vinifera] gi|297742065|emb|CBI33852.3| unnamed protein product [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/322 (73%), Positives = 276/322 (85%), Gaps = 1/322 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRT+TLECPGCPP+RALTFD LGL+KV EAR + GG+PKVV+RWG+P SS C+LAASID
Sbjct: 1   MPRTSTLECPGCPPIRALTFDVLGLVKVTEARSKEGGIPKVVDRWGEPDSSKCILAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLA+AR+ GL +ILNPLNG   ++ISN  D+G +P DD IVGLHLFK+Q  + S
Sbjct: 61  DRKSGPLLAIAREGGLIEILNPLNGHPCLSISNIIDNGPEPGDDAIVGLHLFKKQNLDLS 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVCASGTIAFSKVDISEKFSLF 179
           SRS TLLTCTTKG ASMRS+E+T   A+S+ S + ++WNVCASG I  S+VD +E ++LF
Sbjct: 121 SRSHTLLTCTTKGNASMRSVELTSSHADSTSSVSSRTWNVCASGNILCSQVDGNENYALF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVNVWDL++  KIWTAK PPKNSLG+FTPTWFTSA FLS DDHRKFVAGTN HQV
Sbjct: 181 GGKGVEVNVWDLEQGTKIWTAKSPPKNSLGLFTPTWFTSATFLSKDDHRKFVAGTNSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRETPIKAVAE+ D + IYIGNGSGDLASVD+RTGKLLGCF+GK
Sbjct: 241 RLYDISAQRRPVISFDFRETPIKAVAEDQDGYTIYIGNGSGDLASVDMRTGKLLGCFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGF 321
           CSGSIRSIARHP LP+IASCG 
Sbjct: 301 CSGSIRSIARHPELPVIASCGL 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133888|ref|XP_002321685.1| predicted protein [Populus trichocarpa] gi|222868681|gb|EEF05812.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/322 (74%), Positives = 265/322 (82%), Gaps = 5/322 (1%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLECPGCPPLRALTFDSLGLIKVIE+RGE G +P+VVERWGDP SS CVLAASID
Sbjct: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERG-IPQVVERWGDPDSSKCVLAASID 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DPLLAVARKNG  ++LNPLNG++RV  SN  + G QPEDD I GLHLFKR+R   S
Sbjct: 60  DRKKDPLLAVARKNGEVEVLNPLNGEIRVVFSNVVEDGVQPEDDAIAGLHLFKRER---S 116

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAE-SSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           + S  LLTCTTKG ASMRSI V K  A+ ++ S  K+W VC SG +  SKVD SE +++F
Sbjct: 117 TGSCALLTCTTKGNASMRSIGVDKSMADVANTSVTKTWKVCGSGNVLCSKVDGSENYAVF 176

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+WDL+   KIWTAKPPPKNSLGIFTPTWFT   FLS DDHRKF AGTN HQV
Sbjct: 177 GGKGVEVNLWDLESSTKIWTAKPPPKNSLGIFTPTWFTCTTFLSNDDHRKFAAGTNIHQV 236

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRET IKAV E+ D   IYIGNGSGDLAS D+RTGKLLGCFIGK
Sbjct: 237 RLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGK 296

Query: 300 CSGSIRSIARHPTLPIIASCGF 321
           CSGSIRS+ARHP LP+IASCG 
Sbjct: 297 CSGSIRSMARHPELPVIASCGL 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136107|gb|ADN33953.1| WD-repeat protein [Cucumis melo subsp. melo]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/322 (69%), Positives = 264/322 (81%), Gaps = 1/322 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTL+CPGCPPLRALTFD LGL+KVIEARG+ G +PKVVERWG+P  S  VLAAS+ 
Sbjct: 1   MPRTTTLDCPGCPPLRALTFDVLGLVKVIEARGKEGEIPKVVERWGEPDFSKSVLAASLA 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DPLLAVARKNGL ++LNPLNG+L VAIS+  D+   P+D+ IVG+HLF +   E  
Sbjct: 61  DRKFDPLLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVE 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           SR  TLL+CTTKG ASMRSIE +  S+ ++S + VK+W VC SG +  SKVD SE  +LF
Sbjct: 121 SRRCTLLSCTTKGNASMRSIEFSSSSSRDASTNLVKTWKVCGSGDVMCSKVDGSETHALF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+W+L++C KIWTAK P KN+LGIFTPTWFTSA FLS DDHRKF AGTN HQV
Sbjct: 181 GGKGVEVNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQ+RPV+SFDFRETPIK++AE+ D   I++GN SGDLAS DIR GKLLGCF+GK
Sbjct: 241 RLYDISAQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGF 321
           CSGSIRSIARHP LP+IASCG 
Sbjct: 301 CSGSIRSIARHPELPVIASCGL 322

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560339|ref|XP_003548450.1| PREDICTED: WD repeat-containing protein 74-like [Glycine max]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/322 (68%), Positives = 261/322 (81%), Gaps = 1/322 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRT+TLEC GCPPLRALTFD+LGLIKV+EAR +  G P+VVERWGD  SS CV+A S+ 
Sbjct: 105 MPRTSTLECSGCPPLRALTFDALGLIKVVEARDKQRGAPQVVERWGDLESSKCVMAVSMI 164

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLAVARKN   ++L+P+NGD++  I++A D   Q E + IVGLHLF +Q  E +
Sbjct: 165 DRESHPLLAVARKNNQIEVLSPVNGDIQATITDANDLDVQSEVNNIVGLHLFAKQNSELA 224

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
           SR  TLLTCTTKG AS+RSIE+   S  SSC  + K WNVC+ G I   KVD +EKF+LF
Sbjct: 225 SRDCTLLTCTTKGNASIRSIELVDSSTVSSCIDSPKIWNVCSGGNILCCKVDGNEKFALF 284

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVE+N+WDL+   KIW +KPPPK++LGIFTPTWFTSA FL  DDHRKFVAGTN HQV
Sbjct: 285 GGKGVEMNIWDLNNFTKIWNSKPPPKDNLGIFTPTWFTSATFLMKDDHRKFVAGTNSHQV 344

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRETPIKA+AE+ D ++IY+GNGSGD+ASVDIRTGK+LGCF GK
Sbjct: 345 RLYDMSAQRRPVLSFDFRETPIKALAEDIDGYSIYVGNGSGDMASVDIRTGKMLGCFSGK 404

Query: 300 CSGSIRSIARHPTLPIIASCGF 321
           CSGSIRSI RHP LP+IASCG 
Sbjct: 405 CSGSIRSIVRHPELPVIASCGL 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119618|ref|XP_002318118.1| predicted protein [Populus trichocarpa] gi|222858791|gb|EEE96338.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/322 (71%), Positives = 257/322 (79%), Gaps = 15/322 (4%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLECPGCPPLRALTFDSLGLIKVIE+RGE G  P+VVERWGDP SS CVLAAS D
Sbjct: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERG-TPQVVERWGDPVSSKCVLAASFD 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DP+          +++NPLNG++ V  SN G+ G QPEDD I GLHLF+R+R   S
Sbjct: 60  DRKKDPV----------EVVNPLNGEIHVVFSNVGEDGVQPEDDAISGLHLFRRER---S 106

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           S S TLLTCT+KG AS+RSI V K++A+S S S  K+W VC SG +  SKVD SE +++F
Sbjct: 107 SGSCTLLTCTSKGNASVRSIGVDKLTADSASISVTKTWKVCGSGNVLCSKVDGSENYAVF 166

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+WDL+   KIWTAKPPPKNSLGIFTPTWFT   FLS DDH KFVAGTN HQV
Sbjct: 167 GGKGVEVNLWDLENSTKIWTAKPPPKNSLGIFTPTWFTCTTFLSNDDHHKFVAGTNSHQV 226

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
            LYD SAQRRPV+SFDFRET IKAV E+ D   IYIGNGSGDLAS D+RTGKLLGCFIGK
Sbjct: 227 HLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGK 286

Query: 300 CSGSIRSIARHPTLPIIASCGF 321
           CSGSIRSIARHP LP+IASCG 
Sbjct: 287 CSGSIRSIARHPELPVIASCGL 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520388|ref|XP_003528844.1| PREDICTED: WD repeat-containing protein 74-like [Glycine max]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/321 (67%), Positives = 259/321 (80%), Gaps = 2/321 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLEC GCPPLRALTFD+LGLIKV+EAR +  G P VVERWGDP SS CV+A S+ 
Sbjct: 1   MPRTTTLECSGCPPLRALTFDALGLIKVVEARDKQRGAPLVVERWGDPESSKCVMAVSMI 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLAVARKN   ++L+P+NGD++  IS+A D   Q E++ IVGLHLF +Q  E +
Sbjct: 61  DRKSHPLLAVARKNNQIEVLSPVNGDIQATISDANDLDVQSEENNIVGLHLFAKQNSELA 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180
            R  TLLTCTTKG AS+RSIE+   S  SSC  +K+WNVC+ G I   KVD +EKF+LFG
Sbjct: 121 FRDCTLLTCTTKGNASIRSIELADSSKGSSC--IKTWNVCSGGNILCCKVDGNEKFALFG 178

Query: 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240
           GK VE+N+WDL+   KIW +KPP K++LGIFTPT FTSA FL  DDHRKFVAGTN HQVR
Sbjct: 179 GKCVEMNIWDLNNFTKIWNSKPPTKDNLGIFTPTCFTSATFLMKDDHRKFVAGTNSHQVR 238

Query: 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300
           LYD SAQRRPV+SFDFRETPIKA+AE+ D ++IY+GNGSGD+ASVDIRTGK+LGCF GKC
Sbjct: 239 LYDVSAQRRPVLSFDFRETPIKALAEDIDGYSIYVGNGSGDMASVDIRTGKMLGCFSGKC 298

Query: 301 SGSIRSIARHPTLPIIASCGF 321
           SGSIRSI +HP LP+IASCG 
Sbjct: 299 SGSIRSIVKHPELPVIASCGL 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540311|ref|XP_002511220.1| WD-repeat protein, putative [Ricinus communis] gi|223550335|gb|EEF51822.1| WD-repeat protein, putative [Ricinus communis]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/323 (67%), Positives = 261/323 (80%), Gaps = 6/323 (1%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTT+E PGCP LRALTFD+LG  KVIE+RG+ G +P+VV+RWGDP  S CVLA SID
Sbjct: 1   MPRTTTVETPGCPQLRALTFDALGFTKVIESRGDRG-IPQVVQRWGDPDPSKCVLAVSID 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-QPEDDGIVGLHLFKRQREES 119
           D + DPLLAV RK+G+ +++N LNG ++ +ISN GD+ A +P+DD + GLHLF+RQR   
Sbjct: 60  DHKQDPLLAVGRKDGVIEVMNTLNGQIQASISNVGDADAVKPQDDAVAGLHLFRRQRLSG 119

Query: 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCASGTIAFSKVDISEKFSL 178
           S     LLTCT KG AS+R +E    SA+++ S  +++W VCASG I  SKVD SE ++L
Sbjct: 120 SC---NLLTCTMKGNASIRPLEFNGSSADNASSDGLRNWKVCASGNIFCSKVDGSENYAL 176

Query: 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           FGGK VE+N+WDL+KC +IW AK PPKNSLGIFTPTWFTSA FLS DDHRKF AGT++HQ
Sbjct: 177 FGGKSVELNLWDLEKCSRIWNAKSPPKNSLGIFTPTWFTSATFLSNDDHRKFAAGTSNHQ 236

Query: 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
           VRLYDTSA RRPV+SFDFRE PIKAV E+ D + IYIGNGSGDLASVDIRTGKLLGCF+G
Sbjct: 237 VRLYDTSALRRPVISFDFREAPIKAVTEDQDGYTIYIGNGSGDLASVDIRTGKLLGCFLG 296

Query: 299 KCSGSIRSIARHPTLPIIASCGF 321
           KCSGSIRSIARHP LP+I SCG 
Sbjct: 297 KCSGSIRSIARHPELPLIGSCGL 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218889|ref|NP_174226.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|111074196|gb|ABH04471.1| At1g29320 [Arabidopsis thaliana] gi|332192951|gb|AEE31072.1| WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/322 (62%), Positives = 238/322 (73%), Gaps = 1/322 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPR    E  GCPP RALTFDSLGLIKV EARG+  G+P VV  WG+ ++S  VLAASID
Sbjct: 1   MPRVIPPENLGCPPFRALTFDSLGLIKVTEARGQERGIPTVVNTWGEMNASRSVLAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D   +PLLAVARK+G  +++NP NGDL  + S  GD G  PED+ I  LHLF+++ ++ +
Sbjct: 61  DRLRNPLLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQT 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
            RS TLLTCT KG  S+RS++       S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct: 121 ERSCTLLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGK VE N+WDL++C KIW+AK PPKN+LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct: 181 GGKRVEANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD S QRRPV+SFDFRET I ++AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct: 241 RLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGF 321
           CSGSIRS+ RHP   +IASCG 
Sbjct: 301 CSGSIRSVVRHPQHQVIASCGL 322

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845852|ref|XP_002890807.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297336649|gb|EFH67066.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/322 (62%), Positives = 239/322 (74%), Gaps = 1/322 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPR    E  GCPP+RALTFDSLGLIKV EARG+  G P VV  WG+ ++S  VLAASID
Sbjct: 1   MPRVIPPENLGCPPIRALTFDSLGLIKVTEARGKERGTPTVVNTWGEMNASRTVLAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D   +PLLAVARK+G  ++LNP NGDL  + S  GD G  PED+ I  LHLF+++ ++ +
Sbjct: 61  DRLRNPLLAVARKDGNVEVLNPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQA 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
            RS TLLTCT KG  S+RS++      +S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct: 121 ERSCTLLTCTKKGDVSLRSVKFPDSHGDSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGK VE N+WDL++C KIW+AK PPK++LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct: 181 GGKRVEANIWDLEQCTKIWSAKSPPKDNLGIFTPTWFTSATFLSNDDHRKFVTGTKSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD S QRRPV+SFDFRET I A+AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct: 241 RLYDISTQRRPVLSFDFRETAITAIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGF 321
           CSGSIRS+ RHP   +IASCG 
Sbjct: 301 CSGSIRSVVRHPQHQVIASCGL 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122699|ref|XP_003563052.1| PREDICTED: WD repeat-containing protein 74-like [Brachypodium distachyon]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 235/323 (72%), Gaps = 4/323 (1%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPR T++E PGCPPLRA+T D LGL+KV+EAR    GV KVVE WG+P +S  +L AS+ 
Sbjct: 1   MPRLTSVESPGCPPLRAITTDVLGLVKVVEARARPAGVAKVVETWGEPDASRSILVASLA 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA--GDSGAQPEDDGIVGLHLFKRQREE 118
           D   DP+LAVARKNG+ ++LNPLNGD   A+ ++    +     DD +V LHLFK+Q  +
Sbjct: 61  DRAVDPVLAVARKNGVVELLNPLNGDALAAVKSSWPEQTDGAAGDDPLVALHLFKKQAPD 120

Query: 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178
           S  R  T L CT KGKA +RS+     +++       +W+VC +G + FS VD  E +++
Sbjct: 121 S--RLGTFLACTDKGKACVRSVAKENTASDLDVGPSSTWDVCNAGKLQFSSVDAGENYAM 178

Query: 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           FGGKG+EVN+WD+  C KIW+AK P  NSLGIFT  WFT+  FL  DDHRK VA TN+HQ
Sbjct: 179 FGGKGIEVNLWDITSCSKIWSAKCPRANSLGIFTRPWFTAGTFLCKDDHRKIVACTNNHQ 238

Query: 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
           VRLYDT++QRRPV+S DFRE+PIKAV E+PD   IYIG G+GDLAS D+RTGKLLGC++G
Sbjct: 239 VRLYDTASQRRPVISVDFRESPIKAVVEDPDGHTIYIGTGTGDLASFDMRTGKLLGCYVG 298

Query: 299 KCSGSIRSIARHPTLPIIASCGF 321
           KC GSIRSI +HP LP+IASCG 
Sbjct: 299 KCCGSIRSIVKHPELPLIASCGL 321

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2013678	468	AT1G29320 "AT1G29320" [Arabido	0.981	0.683	0.598	2.1e-100
ZFIN|ZDB-GENE-060929-1138	375	wdr74 "WD repeat domain 74" [D	0.524	0.456	0.383	7.4e-27
UNIPROTKB|Q58D06	385	WDR74 "WD repeat-containing pr	0.423	0.358	0.405	4.8e-23
UNIPROTKB|I3LD53	385	WDR74 "Uncharacterized protein	0.423	0.358	0.398	1e-22
UNIPROTKB|E2R2B7	383	WDR74 "Uncharacterized protein	0.423	0.360	0.398	1.6e-22
UNIPROTKB|E9PS41	328	WDR74 "WD repeat-containing pr	0.423	0.420	0.391	5.5e-22
UNIPROTKB|Q6RFH5	385	WDR74 "WD repeat-containing pr	0.423	0.358	0.391	6.1e-22
RGD|1582881	366	Wdr74 "WD repeat domain 74" [R	0.420	0.374	0.394	1.1e-21
MGI|MGI:2147427	384	Wdr74 "WD repeat domain 74" [M	0.420	0.356	0.394	1.4e-21
WB|WBGene00011538	431	T06E6.1 [Caenorhabditis elegan	0.423	0.320	0.373	2.8e-16

TAIR|locus:2013678 AT1G29320 "AT1G29320" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 192/321 (59%), Positives = 225/321 (70%)

Query:     1 MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
             MPR    E  GCPP RALTFDSLGLIKV EARG+  G+P VV  WG+ ++S  VLAASID
Sbjct:     1 MPRVIPPENLGCPPFRALTFDSLGLIKVTEARGQERGIPTVVNTWGEMNASRSVLAASID 60

Query:    61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKXXXXXXX 120
             D   +PLLAVARK+G  +++NP NGDL  + S  GD G  PED+ I  LHLF+       
Sbjct:    61 DRLRNPLLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQT 120

Query:   121 XXXXXXXXXXXKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
                        KG  S+RS++       S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct:   121 ERSCTLLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query:   180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GGK VE N+WDL++C KIW+AK PPKN+LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct:   181 GGKRVEANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQV 240

Query:   240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
             RLYD S QRRPV+SFDFRET I ++AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct:   241 RLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query:   300 CSGSIRSIARHPTLPIIASCG 320
             CSGSIRS+ RHP   +IASCG
Sbjct:   301 CSGSIRSVVRHPQHQVIASCG 321

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-060929-1138 wdr74 "WD repeat domain 74" [Danio rerio (taxid:7955)]

 Score = 275 (101.9 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 69/180 (38%), Positives = 103/180 (57%)

Query:   144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEK-IWTAK 201
             KV  E S  TV+  NV     I   + + S++  +  GGK   + VWDL+K +K I+TAK
Sbjct:   110 KVWKEGSTDTVEV-NV--GKDICKMRQNQSQRHHVATGGKENPLKVWDLEKPDKPIFTAK 166

Query:   202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETP 260
                 + L +  P W    +F++  D  K V  T  H+VR+YD S  QRRPV+  DF E P
Sbjct:   167 NVAHDWLEMRVPVWVRDISFIADSD--KIVTCTGHHKVRVYDPSTPQRRPVLEADFGEYP 224

Query:   261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
             + A++       + +GN  G+LA +D+R G + GCF G  +G++R +  HP+LP++ASCG
Sbjct:   225 LTALSLPASQDAVVVGNTHGELAILDLRKGLVRGCFKG-LAGAVRGLQCHPSLPLVASCG 283

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58D06 WDR74 "WD repeat-containing protein 74" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 58/143 (40%), Positives = 83/143 (58%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   149 GGKENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLP--ESQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ AV   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCG 320
             G  +GS+R +  HP+ P++ASCG
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCG 288

GO:0005730 "nucleolus" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|I3LD53 WDR74 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 57/143 (39%), Positives = 83/143 (58%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   149 GGKENALKVWDLQGSEEPVFKAKNVRNDWLDLRVPIWDQDIQFLP--ESQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCG 320
             G  +GS+R +  HP+ P++ASCG
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCG 288

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|E2R2B7 WDR74 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 57/143 (39%), Positives = 82/143 (57%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   150 GGKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--ESQKLVTCTGYHQ 207

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   208 VRVYDPASPQRRPVLEVTYGEYPLMAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 267

Query:   298 GKCSGSIRSIARHPTLPIIASCG 320
             G  +GS+R +  HP+ P++ASCG
Sbjct:   268 G-LAGSVRGLQCHPSKPLLASCG 289

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|E9PS41 WDR74 "WD repeat-containing protein 74" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 56/143 (39%), Positives = 81/143 (56%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct:    92 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 149

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   150 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 209

Query:   298 GKCSGSIRSIARHPTLPIIASCG 320
             G  +GS+R +  HP+ P++ASCG
Sbjct:   210 G-LAGSVRGLQCHPSKPLLASCG 231

GO:0001825 "blastocyst formation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|Q6RFH5 WDR74 "WD repeat-containing protein 74" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 6.1e-22, P = 6.1e-22
 Identities = 56/143 (39%), Positives = 81/143 (56%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct:   149 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCG 320
             G  +GS+R +  HP+ P++ASCG
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCG 288

GO:0001825 "blastocyst formation" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1582881 Wdr74 "WD repeat domain 74" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 56/142 (39%), Positives = 80/142 (56%)

Query:   181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct:   151 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQV 208

Query:   240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
             R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct:   209 RIYDPASPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 268

Query:   299 KCSGSIRSIARHPTLPIIASCG 320
               +GS+R +  HP+ P++ASCG
Sbjct:   269 -LAGSVRGLQCHPSKPLLASCG 289

GO:0001825 "blastocyst formation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016070 "RNA metabolic process" evidence=IEA;ISO

MGI|MGI:2147427 Wdr74 "WD repeat domain 74" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 56/142 (39%), Positives = 80/142 (56%)

Query:   181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct:   150 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLP--GSQKLVTCTGYHQV 207

Query:   240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
             R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct:   208 RVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 267

Query:   299 KCSGSIRSIARHPTLPIIASCG 320
               +GS+R +  HP+ P++ASCG
Sbjct:   268 -LAGSVRGLQCHPSKPLLASCG 288

GO:0001825 "blastocyst formation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0016070 "RNA metabolic process" evidence=IMP

WB|WBGene00011538 T06E6.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 218 (81.8 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 53/142 (37%), Positives = 73/142 (51%)

Query:   180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GG    +  W+L+  ++ W+AK  P + LG+  P   T A F  I      +  T  H++
Sbjct:   136 GGMKNLLKTWNLETGQQTWSAKNVPPDMLGLEIPIMITDARF--IPGQNTILEATKLHEM 193

Query:   240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIG 298
             RLYD  AQRRPV    F E PI   +    +  I   N  G++   D+R+     C F G
Sbjct:   194 RLYDPRAQRRPVKKIPFMENPIMCTSLTYKTNQILAANSIGEMGLFDLRSKVHPMCKFKG 253

Query:   299 KCSGSIRSIARHPTLPIIASCG 320
             + +GSIRSI  HPTLP+ AS G
Sbjct:   254 Q-AGSIRSITAHPTLPLAASVG 274

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015713001 SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (415 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 222 LSIDDHRKFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280
           ++      FVA  + D  ++L+D    +  V +       + +VA  PD   +   +  G
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Query: 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF 321
            +   D+ TGK LG   G     + S+A  P   ++AS   
Sbjct: 200 TIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSE 239

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + +WDL   + + T                  S AF    D  K ++ ++D  ++L+D S
Sbjct: 159 IKLWDLRTGKCVATLTGHTG---------EVNSVAFS--PDGEKLLSSSSDGTIKLWDLS 207

Query: 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305
             +  + +    E  + +VA  PD + +  G+  G +   D+RTG+ +    G  + S+ 
Sbjct: 208 TGK-CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVT 265

Query: 306 SIARHPTLPIIASCGF 321
           S+A  P    +AS   
Sbjct: 266 SLAWSPDGKRLASGSA 281

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 25/189 (13%)

Query: 145 VSAESSCSTVKSWNVCASGTIAF--------SKVDISEKFSLF---GGKGVEVNVWDLDK 193
            S  S   T+K W++     ++         S +  S    L    G     + +WDL  
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 194 CEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252
            + + +       + +  F+P            D     +G++D  +RL+D  +    + 
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSP------------DGSLLASGSSDGTIRLWDLRSSSSLLR 278

Query: 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHP 311
           +     + + +VA  PD   +  G+  G +   D+ TGKLL     K   G + S++  P
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 312 TLPIIASCG 320
              ++ S G
Sbjct: 339 DGSLLVSGG 347

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 10/161 (6%)

Query: 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221
             +I         +  L G     + +WDLD  EK+         SL     +  +  A 
Sbjct: 65  EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI-------KSLEGLHDSSVSKLAL 117

Query: 222 LSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGS 279
            S D +   +A ++ D  V+L+D S   + + + +     + ++A  PD        +  
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
           G +   D+RTGK L    G  +  + S+A  P   ++ + G
Sbjct: 178 GTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGLLIASG 217

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
PTZ00420	568	coronin; Provisional	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG1273	405	consensus WD40 repeat protein [General function pr	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.71
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
COG2319	466	FOG: WD40 repeat [General function prediction only	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
KOG1963	792	consensus WD40 repeat protein [General function pr	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.6
KOG4227	609	consensus WD40 repeat protein [General function pr	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.57
PRK01742	429	tolB translocation protein TolB; Provisional	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.53
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.52
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.52
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.52
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.5
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.44
KOG4547	541	consensus WD40 repeat-containing protein [General	99.43
KOG1963	792	consensus WD40 repeat protein [General function pr	99.42
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.41
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.4
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.39
KOG1334	559	consensus WD40 repeat protein [General function pr	99.38
PRK03629	429	tolB translocation protein TolB; Provisional	99.38
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
PRK04922	433	tolB translocation protein TolB; Provisional	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.33
KOG2321	703	consensus WD40 repeat protein [General function pr	99.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.27
PRK04922	433	tolB translocation protein TolB; Provisional	99.27
PRK02889	427	tolB translocation protein TolB; Provisional	99.26
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.24
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.22
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.22
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.22
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.15
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.12
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.11
KOG2315	566	consensus Predicted translation initiation factor	99.08
PRK05137	435	tolB translocation protein TolB; Provisional	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.08
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.05
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.05
PRK00178	430	tolB translocation protein TolB; Provisional	99.01
COG4946	668	Uncharacterized protein related to the periplasmic	99.0
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.99
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.98
PRK04792	448	tolB translocation protein TolB; Provisional	98.97
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.97
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.97
PRK00178	430	tolB translocation protein TolB; Provisional	98.96
PRK01029	428	tolB translocation protein TolB; Provisional	98.96
KOG2314	698	consensus Translation initiation factor 3, subunit	98.93
PRK01029	428	tolB translocation protein TolB; Provisional	98.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.93
KOG2695	425	consensus WD40 repeat protein [General function pr	98.9
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.89
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.87
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.85
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.8
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.79
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.78
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.76
PRK04792	448	tolB translocation protein TolB; Provisional	98.76
KOG2695	425	consensus WD40 repeat protein [General function pr	98.75
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.75
KOG2314	698	consensus Translation initiation factor 3, subunit	98.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.72
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.72
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.7
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.7
COG4946	668	Uncharacterized protein related to the periplasmic	98.68
KOG2315	566	consensus Predicted translation initiation factor	98.68
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.66
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.62
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.61
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.59
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.58
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.57
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.52
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.47
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.46
PRK04043	419	tolB translocation protein TolB; Provisional	98.45
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.42
PRK02888	635	nitrous-oxide reductase; Validated	98.41
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.36
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.33
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.27
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.21
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.21
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.19
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.17
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.16
PRK04043	419	tolB translocation protein TolB; Provisional	98.11
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.08
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.04
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.03
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.99
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.96
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.96
PRK02888	635	nitrous-oxide reductase; Validated	97.95
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.95
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.89
KOG3621	726	consensus WD40 repeat-containing protein [General	97.86
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.62
KOG3621	726	consensus WD40 repeat-containing protein [General	97.61
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.56
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.55
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.49
KOG2444	238	consensus WD40 repeat protein [General function pr	97.48
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.46
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.41
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.4
KOG2395	644	consensus Protein involved in vacuole import and d	97.33
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.31
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.27
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.09
KOG2395	644	consensus Protein involved in vacuole import and d	97.06
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.04
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.83
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.75
KOG2444	238	consensus WD40 repeat protein [General function pr	96.69
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.61
COG3391	381	Uncharacterized conserved protein [Function unknow	96.59
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.58
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.5
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.49
PHA02713	557	hypothetical protein; Provisional	96.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.32
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.28
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.27
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.19
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.08
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.98
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.84
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.8
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.66
PRK13616	591	lipoprotein LpqB; Provisional	95.6
PHA02713	557	hypothetical protein; Provisional	95.6
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.6
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.57
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.55
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.55
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.54
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.47
COG3391	381	Uncharacterized conserved protein [Function unknow	95.45
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.25
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.24
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.14
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.13
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.97
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.85
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.68
PRK13616	591	lipoprotein LpqB; Provisional	94.65
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.42
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.21
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.16
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.15
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.25
COG5167	776	VID27 Protein involved in vacuole import and degra	93.13
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.97
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.93
KOG2247	615	consensus WD40 repeat-containing protein [General	92.79
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	92.63
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.59
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.51
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.3
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.2
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.44
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.32
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.26
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.79
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.7
COG5167	776	VID27 Protein involved in vacuole import and degra	90.67
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.66
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.19
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.15
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.64
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.46
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.45
PHA03098	534	kelch-like protein; Provisional	89.15
PHA03098	534	kelch-like protein; Provisional	89.09
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.01
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.82
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.27
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.25
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.06
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.62
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.41
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.31
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.1
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.98
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.86
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.84
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	85.44
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.34
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.21
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.84
PHA02790	480	Kelch-like protein; Provisional	84.46
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.33
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.24
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	83.82
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.6
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.24
PRK10115	686	protease 2; Provisional	83.06
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	83.03
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	82.95
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	82.9
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	82.63
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	81.9
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	81.72
COG4590	733	ABC-type uncharacterized transport system, permeas	80.85
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	80.45

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-41  Score=264.46  Aligned_cols=279  Identities=18%  Similarity=0.182  Sum_probs=223.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .+|++|+-|.++|+||+.++     ...++.  +.+..=++  |.+++++++.||+|+.||+|++||..+++.+..-.  
T Consensus       128 ~~l~tGsGD~TvR~WD~~Te-----Tp~~t~--KgH~~WVl--cvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l--  196 (480)
T KOG0271|consen  128 SRLVTGSGDTTVRLWDLDTE-----TPLFTC--KGHKNWVL--CVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL--  196 (480)
T ss_pred             ceEEecCCCceEEeeccCCC-----Ccceee--cCCccEEE--EEEECCCcchhhccccCCeEEEecCCCCCcccccc--
Confidence            68999999999999999976     222122  23444444  44566777799999999999999998887654433  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------ccccccc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------SAESSCS  152 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------~~~~~~~  152 (326)
                           ..|...|.+|++-+-+.   .+...++++++.||.++|||+.....                      .+++.|+
T Consensus       197 -----~gH~K~It~Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr  268 (480)
T KOG0271|consen  197 -----RGHKKWITALAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR  268 (480)
T ss_pred             -----cCcccceeEEeeccccc---CCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence                 27889999999755322   22445899999999999999876432                      5677888


Q ss_pred             eEEEEEccCCC----------ceEEEEEc-----------CCCC-------------------------EEEEecCCCeE
Q 020454          153 TVKSWNVCASG----------TIAFSKVD-----------ISEK-------------------------FSLFGGKGVEV  186 (326)
Q Consensus       153 ~~~~~~~~~~~----------~v~~~~~~-----------~~~~-------------------------~l~sg~~d~~i  186 (326)
                      +|++|+...+.          -|+.++.+           |.++                         .|++|+.|.++
T Consensus       269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl  348 (480)
T KOG0271|consen  269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL  348 (480)
T ss_pred             eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence            88888865421          25555554           3333                         48888888888


Q ss_pred             EEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEE
Q 020454          187 NVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA  265 (326)
Q Consensus       187 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~  265 (326)
                      .+|+... .+++.+..+|.         .-|..+.|+|  +++++|+++.|+.|++||.+++ +.+.+|.+|-.+|+.++
T Consensus       349 flW~p~~~kkpi~rmtgHq---------~lVn~V~fSP--d~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqva  416 (480)
T KOG0271|consen  349 FLWNPFKSKKPITRMTGHQ---------ALVNHVSFSP--DGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVA  416 (480)
T ss_pred             EEecccccccchhhhhchh---------hheeeEEECC--CccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEE
Confidence            8888654 34666666655         4488999999  6789999999999999999998 67899999999999999


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       266 ~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |+.|.++|++|+.|.++++||+++.++...++|| .+.|.+++|+|||..+++||.|+..
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh-~DEVf~vDwspDG~rV~sggkdkv~  475 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH-ADEVFAVDWSPDGQRVASGGKDKVL  475 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeeeeecccCCCC-CceEEEEEecCCCceeecCCCceEE
Confidence            9999999999999999999999999999999998 9999999999999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.1e-42  Score=269.69  Aligned_cols=266  Identities=16%  Similarity=0.147  Sum_probs=227.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..++||+-.|.+|||+....     .....+..+...  +.++-|.+..++.-|++++.||++++|++.+...+..+.  
T Consensus       188 ~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~--  258 (459)
T KOG0272|consen  188 KHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSR--VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE--  258 (459)
T ss_pred             CeEEEeecCCceeEeecCCc-----ceeEEEeccccc--eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh--
Confidence            77999999999999999876     444455544443  334444443334469999999999999998777666665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            +|...|..+++.+        ++.+|.+++.|.+-++||++....         .+..-.|...|.+++|+|+|
T Consensus       259 ------gH~~RVs~VafHP--------sG~~L~TasfD~tWRlWD~~tk~E---------lL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  259 ------GHLARVSRVAFHP--------SGKFLGTASFDSTWRLWDLETKSE---------LLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             ------cchhhheeeeecC--------CCceeeecccccchhhcccccchh---------hHhhcccccccceeEecCCC
Confidence                  5567888788765        778999999999999999886542         22333567789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      .++++||.|..-+|||+++++++..+.+|.         ..|.+|+|+|  +|..+|+|+.|++++|||+|.- +++..+
T Consensus       316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~---------k~I~~V~fsP--NGy~lATgs~Dnt~kVWDLR~r-~~ly~i  383 (459)
T KOG0272|consen  316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHI---------KEILSVAFSP--NGYHLATGSSDNTCKVWDLRMR-SELYTI  383 (459)
T ss_pred             ceeeccCccchhheeecccCcEEEEecccc---------cceeeEeECC--CceEEeecCCCCcEEEeeeccc-ccceec
Confidence            999999999999999999999999998876         4578999999  6889999999999999999965 679999


Q ss_pred             eecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..|..-|+.|.|+| .|.+|++++.|++++||.-++..+++.+.|| ++.|.+++.+|++.+|+|+|.|++.
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCcee
Confidence            99999999999999 5889999999999999999999999999999 9999999999999999999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.7e-38  Score=247.86  Aligned_cols=234  Identities=15%  Similarity=0.173  Sum_probs=200.9

Q ss_pred             EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g  133 (326)
                      +..+.+.  .+++.|++|+-+|.+++|+..+...+..+.        +|...+.++.+.+..      .+..+++|+.||
T Consensus       178 is~~~fS--~ds~~laT~swsG~~kvW~~~~~~~~~~l~--------gH~~~v~~~~fhP~~------~~~~lat~s~Dg  241 (459)
T KOG0272|consen  178 ISGCSFS--RDSKHLATGSWSGLVKVWSVPQCNLLQTLR--------GHTSRVGAAVFHPVD------SDLNLATASADG  241 (459)
T ss_pred             ceeeEee--cCCCeEEEeecCCceeEeecCCcceeEEEe--------ccccceeeEEEccCC------CccceeeeccCC
Confidence            3344443  345589999999999999999887777766        777889888876521      356899999999


Q ss_pred             cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (326)
Q Consensus       134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  213 (326)
                      .+++|+++....        +.-+. .|...|..++|||+|++|+|++.|.+-++||++++..+....+|.         
T Consensus       242 tvklw~~~~e~~--------l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs---------  303 (459)
T KOG0272|consen  242 TVKLWKLSQETP--------LQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS---------  303 (459)
T ss_pred             ceeeeccCCCcc--------hhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc---------
Confidence            999999876432        21111 345689999999999999999999999999999998887777765         


Q ss_pred             CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~  293 (326)
                      ..|.+++|+|  +|.++++|+.|..-+|||+|++ +++..+.+|..+|.+|+|+|+|..|++|+.|++++|||++..+.+
T Consensus       304 ~~v~~iaf~~--DGSL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  304 KGVFSIAFQP--DGSLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL  380 (459)
T ss_pred             cccceeEecC--CCceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence            5588999998  6779999999999999999998 678999999999999999999999999999999999999999999


Q ss_pred             EEEcceecceEEEEEECC-CCCEEEEeccCccC
Q 020454          294 GCFIGKCSGSIRSIARHP-TLPIIASCGFLEAA  325 (326)
Q Consensus       294 ~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~~  325 (326)
                      +.+++| ..-|+.+.|+| .|.+|+|||+|.++
T Consensus       381 y~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  381 YTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             eecccc-cchhhheEecccCCeEEEEcccCcce
Confidence            999998 99999999998 78999999999876

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-37  Score=241.87  Aligned_cols=249  Identities=14%  Similarity=0.207  Sum_probs=208.8

Q ss_pred             CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (326)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~  127 (326)
                      +.+.+.++++.|.+  .+..|++|+.|-++|+||+.+.......+        .|...|.++++.+        ++..|+
T Consensus       112 ~GH~e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--------gH~~WVlcvawsP--------Dgk~iA  173 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTETPLFTCK--------GHKNWVLCVAWSP--------DGKKIA  173 (480)
T ss_pred             CCCCCcEEEEEecC--CCceEEecCCCceEEeeccCCCCcceeec--------CCccEEEEEEECC--------Ccchhh
Confidence            45666777777765  55689999999999999998877666655        7789999999877        778999


Q ss_pred             EEecCCcEEEEEcccccc-----------------------------ccccccceEEEEEccCC----------CceEEE
Q 020454          128 TCTTKGKASMRSIEVTKV-----------------------------SAESSCSTVKSWNVCAS----------GTIAFS  168 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~----------~~v~~~  168 (326)
                      +++.||.|.+||....+.                             ++.+.|+.+++|+....          .+|+|+
T Consensus       174 SG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  174 SGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             ccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence            999999999999665433                             56678999999998653          357777


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe-----------ec-------------
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL-----------SI-------------  224 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~-------------  224 (326)
                      .|-. ..+|++|+.|++|++|+...++....+++|.         .||+.++.+           |.             
T Consensus       254 rwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHa---------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  254 RWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHA---------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             EEcC-CceEEecCCCceEEEEEccchhHHHhhcccc---------hheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            7752 4789999999999999999988888887764         445555433           21             


Q ss_pred             ----------CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454          225 ----------DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (326)
Q Consensus       225 ----------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~  294 (326)
                                ..+..|++|+.|.++.+|+....++|+..+.+|..-|+.+.||||+++|++++.|..|++||-++|+.+.
T Consensus       324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la  403 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA  403 (480)
T ss_pred             HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh
Confidence                      1234699999999999999987778999999999999999999999999999999999999999999999


Q ss_pred             EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          295 CFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .|+|| .++|..++|+.|.++|++||.|.+.
T Consensus       404 sfRGH-v~~VYqvawsaDsRLlVS~SkDsTL  433 (480)
T KOG0271|consen  404 SFRGH-VAAVYQVAWSADSRLLVSGSKDSTL  433 (480)
T ss_pred             hhhhc-cceeEEEEeccCccEEEEcCCCceE
Confidence            99999 9999999999999999999999763

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-35  Score=223.86  Aligned_cols=266  Identities=15%  Similarity=0.197  Sum_probs=217.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce--e-eee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--R-VAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~--~-~~~   91 (326)
                      -++|++++||.+-|||.-+.+.    + ...  +-...=++++.+.  ++++++|+|+.|+...||++.+.+.  . ...
T Consensus        68 r~ivSaSqDGklIvWDs~TtnK----~-hai--pl~s~WVMtCA~s--PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~  138 (343)
T KOG0286|consen   68 RRIVSASQDGKLIVWDSFTTNK----V-HAI--PLPSSWVMTCAYS--PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS  138 (343)
T ss_pred             CeEEeeccCCeEEEEEcccccc----e-eEE--ecCceeEEEEEEC--CCCCeEEecCcCceeEEEecccccccccceee
Confidence            6799999999999999876611    1 111  2334445556554  5566899999999999999974421  1 111


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      +.     ...|.+.+.+..+.         +++.|++++.|.+..+||++...        .+..+. .|.+.|.+++++
T Consensus       139 r~-----l~gHtgylScC~f~---------dD~~ilT~SGD~TCalWDie~g~--------~~~~f~-GH~gDV~slsl~  195 (343)
T KOG0286|consen  139 RE-----LAGHTGYLSCCRFL---------DDNHILTGSGDMTCALWDIETGQ--------QTQVFH-GHTGDVMSLSLS  195 (343)
T ss_pred             ee-----ecCccceeEEEEEc---------CCCceEecCCCceEEEEEcccce--------EEEEec-CCcccEEEEecC
Confidence            11     12777888877764         46789999999999999998755        455555 567899999999


Q ss_pred             C-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454          172 I-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       172 ~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      | +++.+++|+-|+..++||++.+..+..+.+|.         ..|+++.|.|  +|.-|++|+.|++.|+||+|.. +.
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe---------sDINsv~ffP--~G~afatGSDD~tcRlyDlRaD-~~  263 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE---------SDINSVRFFP--SGDAFATGSDDATCRLYDLRAD-QE  263 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcceeEeecccc---------cccceEEEcc--CCCeeeecCCCceeEEEeecCC-cE
Confidence            9 88999999999999999999999999888876         4578999999  5668999999999999999986 44


Q ss_pred             eeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          251 VMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       251 ~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..+.  ....+|++++||..|++|++|..|.++.+||.-.++.+..+.+| +++|.+|..+|||.-|+|||.|...
T Consensus       264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhHhe
Confidence            55554  34468999999999999999999999999999999999999998 9999999999999999999999765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.8e-35  Score=216.13  Aligned_cols=269  Identities=13%  Similarity=0.119  Sum_probs=212.8

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      ++.-|++++.|-+||+|.+.++     +-..++..++..+..+  ....+  .+.|| +...-.||+||+.+++... ..
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrL--eiTpd--k~~LA-aa~~qhvRlyD~~S~np~P-v~   77 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRL--EITPD--KKDLA-AAGNQHVRLYDLNSNNPNP-VA   77 (311)
T ss_pred             CceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeE--EEcCC--cchhh-hccCCeeEEEEccCCCCCc-ee
Confidence            7799999999999999999998     5555666555555544  33322  33444 4555889999998776532 22


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                      .+     ..+.+.|..+.|-.        ++..++++++||.++|||++...        .-+.++  +..+|+++..||
T Consensus        78 t~-----e~h~kNVtaVgF~~--------dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~--~~spVn~vvlhp  134 (311)
T KOG0315|consen   78 TF-----EGHTKNVTAVGFQC--------DGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQ--HNSPVNTVVLHP  134 (311)
T ss_pred             EE-----eccCCceEEEEEee--------cCeEEEecCCCceEEEEeccCcc--------cchhcc--CCCCcceEEecC
Confidence            22     15567788777654        66789999999999999988633        334444  357999999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-----
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----  247 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-----  247 (326)
                      +...|++|..+|.|++||+........+-...        ...|.++...|  +|.+++.+..-|..++|++-..     
T Consensus       135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~--------~~~i~sl~v~~--dgsml~a~nnkG~cyvW~l~~~~~~s~  204 (311)
T KOG0315|consen  135 NQTELISGDQSGNIRVWDLGENSCTHELIPED--------DTSIQSLTVMP--DGSMLAAANNKGNCYVWRLLNHQTASE  204 (311)
T ss_pred             CcceEEeecCCCcEEEEEccCCccccccCCCC--------CcceeeEEEcC--CCcEEEEecCCccEEEEEccCCCcccc
Confidence            99999999999999999998765544433222        14588888888  6779999999999999997642     


Q ss_pred             CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      -.|+.+++.|+..+....+||++++|++++.|.+++||+..+. +....+.+| ...++..+|+.+++||+|+|.|+.|+
T Consensus       205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~r  283 (311)
T KOG0315|consen  205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTAR  283 (311)
T ss_pred             ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCCcee
Confidence            2477888999999999999999999999999999999999987 556678898 99999999999999999999998764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.1e-36  Score=236.86  Aligned_cols=264  Identities=16%  Similarity=0.169  Sum_probs=215.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      =||++|++.|..-+|+....       .+..-...+...+-++.|  +.++.++++|..+|.|++|+..-..+ ..+.. 
T Consensus       109 RRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~a-  177 (464)
T KOG0284|consen  109 RRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNV-KIIQA-  177 (464)
T ss_pred             ceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEE--ccCCCEEEEcCCCceEEecccchhhh-HHhhH-
Confidence            57999999999999998643       112112334444445555  45566999999999999999864444 44442 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...|+++++.+        .+..+++|+.||.|+|||.......        ++. ..++-.|.+++|||..
T Consensus       178 ------hh~eaIRdlafSp--------nDskF~t~SdDg~ikiWdf~~~kee--------~vL-~GHgwdVksvdWHP~k  234 (464)
T KOG0284|consen  178 ------HHAEAIRDLAFSP--------NDSKFLTCSDDGTIKIWDFRMPKEE--------RVL-RGHGWDVKSVDWHPTK  234 (464)
T ss_pred             ------hhhhhhheeccCC--------CCceeEEecCCCeEEEEeccCCchh--------hee-ccCCCCcceeccCCcc
Confidence                  4447899999866        6789999999999999997654321        111 2456679999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      .+|++|++|+.|++||.++++++.++..|+         ..|.++.|.|+  +++|++++.|..+++||+|+. +.+..+
T Consensus       235 gLiasgskDnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f~~n--~N~Llt~skD~~~kv~DiR~m-kEl~~~  302 (464)
T KOG0284|consen  235 GLIASGSKDNLVKLWDPRSGSCLATLHGHK---------NTVLAVKFNPN--GNWLLTGSKDQSCKVFDIRTM-KELFTY  302 (464)
T ss_pred             ceeEEccCCceeEeecCCCcchhhhhhhcc---------ceEEEEEEcCC--CCeeEEccCCceEEEEehhHh-HHHHHh
Confidence            999999999999999999999999988876         55889999985  469999999999999999976 568899


Q ss_pred             eecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++|+..+++++|+|- ..+|.+|+.||.|..|.+...+++..+. +| .+.|++++|+|-|.+|++|+.|+.+
T Consensus       303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlGhil~tgsnd~t~  374 (464)
T KOG0284|consen  303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLGHILATGSNDRTV  374 (464)
T ss_pred             hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccceeEeecCCCcce
Confidence            999999999999996 5677799999999999998777776665 56 9999999999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.4e-34  Score=228.75  Aligned_cols=264  Identities=13%  Similarity=0.215  Sum_probs=218.3

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      .-.|++|.++|.+|+|+..+.      +...++.+..  .++++  -|+..+.||++++.||++.+||..+++....+..
T Consensus       247 G~~LatG~~~G~~riw~~~G~------l~~tl~~Hkg--PI~sl--KWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKDGN------LISTLGQHKG--PIFSL--KWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             CCeEEEeecCcEEEEEecCch------hhhhhhccCC--ceEEE--EEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence            367999999999999999876      4445554433  34444  5567788999999999999999988888777664


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                              +..+-..+.|.         .+..+++++.||.|+++.+....        +++.+.- |.++|.++.|+|.
T Consensus       317 --------~s~~~lDVdW~---------~~~~F~ts~td~~i~V~kv~~~~--------P~~t~~G-H~g~V~alk~n~t  370 (524)
T KOG0273|consen  317 --------HSAPALDVDWQ---------SNDEFATSSTDGCIHVCKVGEDR--------PVKTFIG-HHGEVNALKWNPT  370 (524)
T ss_pred             --------ccCCccceEEe---------cCceEeecCCCceEEEEEecCCC--------cceeeec-ccCceEEEEECCC
Confidence                    22332334443         45689999999999999977544        5666654 7889999999999


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-------CCcEEEEEeCCCeEEEEeCCC
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-------DHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      +.+|++++.|++++||..........++.|.++         |+.+.|+|..       .+..+++++.|++|++||+..
T Consensus       371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske---------i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~  441 (524)
T KOG0273|consen  371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE---------IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES  441 (524)
T ss_pred             CceEEEecCCCeeEeeecCCCcchhhhhhhccc---------eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence            999999999999999999888777777776644         5566776642       345899999999999999998


Q ss_pred             CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       247 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      + .+++.|..|..+|++++|+|+|+++++|+.||.|.+|+.+++++.+.+.+  .+.|..|.|+-+|..|..+-.|+.+
T Consensus       442 g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  442 G-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             C-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCCc
Confidence            8 78999999999999999999999999999999999999999999999996  6779999999999999988888765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-34  Score=223.80  Aligned_cols=267  Identities=12%  Similarity=0.156  Sum_probs=212.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..++++++++.|++||..++     .+.....  .+...+..+++.  ..+++|++++.|=.+++||..+- + ..++..
T Consensus       121 ~~v~~as~d~tikv~D~~tg-----~~e~~Lr--GHt~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~-~-~c~ks~  189 (406)
T KOG0295|consen  121 ALVVSASEDATIKVFDTETG-----ELERSLR--GHTDSVFDISFD--ASGKYLATCSSDLSAKLWDFDTF-F-RCIKSL  189 (406)
T ss_pred             eEEEEecCCceEEEEEccch-----hhhhhhh--ccccceeEEEEe--cCccEEEecCCccchhheeHHHH-H-HHHHHh
Confidence            44677889999999999988     4432232  333335555554  45579999999999999998642 1 222221


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           ..++..|.+..+.+        .++++++++.|.+|+.|+++...        .++.+. .+.+-|..++.+.||
T Consensus       190 -----~gh~h~vS~V~f~P--------~gd~ilS~srD~tik~We~~tg~--------cv~t~~-~h~ewvr~v~v~~DG  247 (406)
T KOG0295|consen  190 -----IGHEHGVSSVFFLP--------LGDHILSCSRDNTIKAWECDTGY--------CVKTFP-GHSEWVRMVRVNQDG  247 (406)
T ss_pred             -----cCcccceeeEEEEe--------cCCeeeecccccceeEEecccce--------eEEecc-CchHhEEEEEecCCe
Confidence                 15556788788777        56899999999999999987654        444444 345578999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec-------------CCCcEEEEEeCCCeEEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-------------DDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------------~~~~~l~~~~~dg~v~i  241 (326)
                      .++|+++.|.+|++|-+.++++...+..|.         -.|.+++|.|.             +.+.++.+++.|++|++
T Consensus       248 ti~As~s~dqtl~vW~~~t~~~k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~  318 (406)
T KOG0295|consen  248 TIIASCSNDQTLRVWVVATKQCKAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI  318 (406)
T ss_pred             eEEEecCCCceEEEEEeccchhhhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence            999999999999999999886655544443         23445555442             22358999999999999


Q ss_pred             EeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ||+.++ .++.++.+|...|..++|+|.|+||+++.+|+++++||++++++...+..| ..-|++++|+.+.++++|||.
T Consensus       319 wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p~VvTGsV  396 (406)
T KOG0295|consen  319 WDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAPYVVTGSV  396 (406)
T ss_pred             EeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCceEEeccc
Confidence            999998 789999999999999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             CccC
Q 020454          322 LEAA  325 (326)
Q Consensus       322 D~~~  325 (326)
                      |-.+
T Consensus       397 dqt~  400 (406)
T KOG0295|consen  397 DQTV  400 (406)
T ss_pred             ccee
Confidence            8654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.2e-35  Score=249.46  Aligned_cols=195  Identities=17%  Similarity=0.237  Sum_probs=177.7

Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  180 (326)
                      +|.++|.+..+.+        +.++|++|++|+++++|++....        .+-.+. .|..+|..+.|+|.|-||||+
T Consensus       449 GH~GPVyg~sFsP--------d~rfLlScSED~svRLWsl~t~s--------~~V~y~-GH~~PVwdV~F~P~GyYFata  511 (707)
T KOG0263|consen  449 GHSGPVYGCSFSP--------DRRFLLSCSEDSSVRLWSLDTWS--------CLVIYK-GHLAPVWDVQFAPRGYYFATA  511 (707)
T ss_pred             cCCCceeeeeecc--------cccceeeccCCcceeeeecccce--------eEEEec-CCCcceeeEEecCCceEEEec
Confidence            7889999999877        67899999999999999988755        455555 567899999999999999999


Q ss_pred             cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (326)
Q Consensus       181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  260 (326)
                      +.|++.++|......++..+.+|.         ..|.++.|+|+  .+++++||.|.+||+||..++ ..++.|.+|.++
T Consensus       512 s~D~tArLWs~d~~~PlRifaghl---------sDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~  579 (707)
T KOG0263|consen  512 SHDQTARLWSTDHNKPLRIFAGHL---------SDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGP  579 (707)
T ss_pred             CCCceeeeeecccCCchhhhcccc---------cccceEEECCc--ccccccCCCCceEEEEEcCCC-cEEEEecCCCCc
Confidence            999999999999888888777765         44779999995  459999999999999999988 569999999999


Q ss_pred             eEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       261 i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |++++|||+|++|++|+.||.|.+||+.+++++..+.+| .+.|.+|.|+.+|.+||+||.|..+
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeE
Confidence            999999999999999999999999999999999999999 9999999999999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-32  Score=207.11  Aligned_cols=269  Identities=9%  Similarity=0.055  Sum_probs=207.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      --+++++.|-.+-+|++...+...-....++..+++...-+++    ++++++.++++.|+++++||+.+++....+.  
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~----s~dg~~alS~swD~~lrlWDl~~g~~t~~f~--  102 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL----SSDGNFALSASWDGTLRLWDLATGESTRRFV--  102 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE----ccCCceEEeccccceEEEEEecCCcEEEEEE--
Confidence            4578899999999999987644433444455554443332322    3456689999999999999999987766665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  173 (326)
                            .|..-|.++++.+        ++..+++++.|.++.+|+.-...        ...+-+..+.+-|.|+.|+|+ 
T Consensus       103 ------GH~~dVlsva~s~--------dn~qivSGSrDkTiklwnt~g~c--------k~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen  103 ------GHTKDVLSVAFST--------DNRQIVSGSRDKTIKLWNTLGVC--------KYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ------ecCCceEEEEecC--------CCceeecCCCcceeeeeeecccE--------EEEEecCCCcCcEEEEEEcCCC
Confidence                  6668899898765        67799999999999999965433        233333323567999999998 


Q ss_pred             -CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          174 -EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       174 -~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                       ..+|++++.|+++++||+++.+......+|.         ..++.++++|  ||.++++|+.||.+.+||++.+ +.+.
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---------~~v~t~~vSp--DGslcasGgkdg~~~LwdL~~~-k~ly  228 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---------GYVNTVTVSP--DGSLCASGGKDGEAMLWDLNEG-KNLY  228 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchhhcccccc---------ccEEEEEECC--CCCEEecCCCCceEEEEEccCC-ceeE
Confidence             5899999999999999999988777665544         6799999998  7789999999999999999987 5566


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee--------cceEEEEEECCCCCEEEEeccCcc
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--------SGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~--------~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      ++ .+...|.+++|+|+.-.|+.+. +-.|+|||+.+++++..++...        .-...+++|+++|..|++|=.|+.
T Consensus       229 sl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  229 SL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             ec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            66 4558999999999876665554 4469999999988776654211        113457899999999999988876


Q ss_pred             C
Q 020454          325 A  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       307 i  307 (315)
T KOG0279|consen  307 I  307 (315)
T ss_pred             E
Confidence            5

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.3e-33  Score=210.54  Aligned_cols=266  Identities=17%  Similarity=0.186  Sum_probs=213.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.|-.|.+|++......      .|.-+.++..++.+-+.  .+++.+++++.|.+|+.||.++|+....++  
T Consensus        60 s~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~l~~~--~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--  129 (338)
T KOG0265|consen   60 SCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVMELHGM--RDGSHILSCGTDKTVRGWDAETGKRIRKHK--  129 (338)
T ss_pred             CeEeecCCcceEEEEeccccccc------eeeeccccceeEeeeec--cCCCEEEEecCCceEEEEecccceeeehhc--
Confidence            46899999999999998765111      22234666777666554  455589999999999999999999877766  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|.+-+..+.....       ....+.+++.||++++||++.++        .++.+.  .+-+++++.|..++
T Consensus       130 ------~h~~~vNs~~p~rr-------g~~lv~SgsdD~t~kl~D~R~k~--------~~~t~~--~kyqltAv~f~d~s  186 (338)
T KOG0265|consen  130 ------GHTSFVNSLDPSRR-------GPQLVCSGSDDGTLKLWDIRKKE--------AIKTFE--NKYQLTAVGFKDTS  186 (338)
T ss_pred             ------cccceeeecCcccc-------CCeEEEecCCCceEEEEeecccc--------hhhccc--cceeEEEEEecccc
Confidence                  44455555553221       23467888999999999998765        333332  24579999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---CCce
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---RRPV  251 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~---~~~~  251 (326)
                      ..+.+|+-|+.|++||++.+..++.+++|.         ..|+.+..+|  +|..+.+-+.|.++++||+|..   .+++
T Consensus       187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~---------DtIt~lsls~--~gs~llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHA---------DTITGLSLSR--YGSFLLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             cceeeccccCceeeeccccCcceEEeeccc---------CceeeEEecc--CCCccccccccceEEEEEecccCCCCceE
Confidence            999999999999999999999999999976         5688999988  5669999999999999998853   2345


Q ss_pred             eEEeecCC----ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          252 MSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       252 ~~~~~~~~----~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..+.++..    .....+|+|+++++.+|+.|..+++||......++.++|| .+.|++++|+|..++|.+|+.|+++
T Consensus       256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcEEEEeccCcee
Confidence            56665422    3345689999999999999999999999999999999999 9999999999999999999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-32  Score=205.59  Aligned_cols=235  Identities=12%  Similarity=0.152  Sum_probs=188.5

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc-----ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCC
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  123 (326)
                      .+..-+.+...... ....+++++.|.++.+|++...     ..++.+.        +|+..|..+....        ++
T Consensus        13 gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--------GHsH~v~dv~~s~--------dg   75 (315)
T KOG0279|consen   13 GHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--------GHSHFVSDVVLSS--------DG   75 (315)
T ss_pred             CCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeee--------ccceEecceEEcc--------CC
Confidence            34444445554443 3447999999999999988533     2333333        5667777777655        77


Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      ++.++++.|+.+++||+....        +.+.+. .|...|.+++++++.+.+++|+.|++|++|++........ ...
T Consensus        76 ~~alS~swD~~lrlWDl~~g~--------~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~-~~~  145 (315)
T KOG0279|consen   76 NFALSASWDGTLRLWDLATGE--------STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI-HED  145 (315)
T ss_pred             ceEEeccccceEEEEEecCCc--------EEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEE-ecC
Confidence            899999999999999987643        344444 4577899999999999999999999999999875544333 322


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~  283 (326)
                      .       +..||+++.|+|+.+..+|++++.|++|++||+++. +....+.+|.+.++.+++||||...++|+.||.+.
T Consensus       146 ~-------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~  217 (315)
T KOG0279|consen  146 S-------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM  217 (315)
T ss_pred             C-------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence            1       137899999999876679999999999999999987 66788889999999999999999999999999999


Q ss_pred             EEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      +||++.++.++.+. | ...|.+++|+|+...|+.+-
T Consensus       218 LwdL~~~k~lysl~-a-~~~v~sl~fspnrywL~~at  252 (315)
T KOG0279|consen  218 LWDLNEGKNLYSLE-A-FDIVNSLCFSPNRYWLCAAT  252 (315)
T ss_pred             EEEccCCceeEecc-C-CCeEeeEEecCCceeEeecc
Confidence            99999999998887 3 88999999999987776653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.6e-31  Score=216.16  Aligned_cols=289  Identities=16%  Similarity=0.165  Sum_probs=215.8

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      -|+|++||++|+.|-+|+-...     |...++.++..  -+.++.+.  +++.++++.+.||.|.+||-.+++.+..+.
T Consensus       159 RPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~Hsk--FV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~  229 (603)
T KOG0318|consen  159 RPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSK--FVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELE  229 (603)
T ss_pred             CceEEEeccCCCeEEEeeCCCe-----eeeeccccccc--ceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence            3599999999999999997765     66555555444  44444443  446689999999999999999999988887


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc------------------------cc
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------AE  148 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~------------------------~~  148 (326)
                      .     ...|.+.|.++.|.+        +...+++++.|.++++||+......                        +-
T Consensus       230 ~-----~~aHkGsIfalsWsP--------Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV  296 (603)
T KOG0318|consen  230 D-----SDAHKGSIFALSWSP--------DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV  296 (603)
T ss_pred             C-----CCCccccEEEEEECC--------CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence            4     247889999999877        7789999999999999998875431                        11


Q ss_pred             cccceEEEEEcc----------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee-----------eeecCCC---
Q 020454          149 SSCSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-----------WTAKPPP---  204 (326)
Q Consensus       149 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-----------~~~~~~~---  204 (326)
                      +-.+.+..++..          |...|+++..++++++|++|+.||.|.-||..++..-           ..+....   
T Consensus       297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~  376 (603)
T KOG0318|consen  297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE  376 (603)
T ss_pred             EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence            122333333332          2345999999999999999999999999999865210           0000000   


Q ss_pred             ---------------------CC----------CC------------------CcC---------CCCceeeeEEeecCC
Q 020454          205 ---------------------KN----------SL------------------GIF---------TPTWFTSAAFLSIDD  226 (326)
Q Consensus       205 ---------------------~~----------~~------------------~~~---------~~~~v~~~~~~p~~~  226 (326)
                                           ..          .+                  -++         ..-...+++++|  +
T Consensus       377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~--~  454 (603)
T KOG0318|consen  377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP--D  454 (603)
T ss_pred             EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC--C
Confidence                                 00          00                  000         001234566777  5


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~  305 (326)
                      +..+++|+.|+.|++|.+.... ........|..+|++++||||+.||++|+..+.+.+||+.+.+......+.|...|.
T Consensus       455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~  534 (603)
T KOG0318|consen  455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN  534 (603)
T ss_pred             CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence            6699999999999999998642 233455678899999999999999999999999999999998875444443399999


Q ss_pred             EEEECCCCCEEEEeccCccC
Q 020454          306 SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++|+|++..+||||.|-.+
T Consensus       535 ~~aWsP~n~~vATGSlDt~V  554 (603)
T KOG0318|consen  535 CVAWSPNNKLVATGSLDTNV  554 (603)
T ss_pred             EEEeCCCceEEEeccccceE
Confidence            99999999999999999653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=228.33  Aligned_cols=229  Identities=15%  Similarity=0.165  Sum_probs=198.0

Q ss_pred             eeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEE
Q 020454           59 IDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR  138 (326)
Q Consensus        59 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~  138 (326)
                      ..|.++++.|++|+..|.+.+|+...-.+...        .|.|+.+|.++.+..        ++..++++..+|.|++|
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti--------lQaHDs~Vr~m~ws~--------~g~wmiSgD~gG~iKyW  165 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI--------LQAHDSPVRTMKWSH--------NGTWMISGDKGGMIKYW  165 (464)
T ss_pred             EEEcCCCceeEeecccccEEEecCceeeHHHH--------hhhhcccceeEEEcc--------CCCEEEEcCCCceEEec
Confidence            35677788999999999999999843332111        147889999999876        67899999999999999


Q ss_pred             EccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceee
Q 020454          139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (326)
                      +.+.+.         +++....+...|++++|+|+...|++++.|++|+|||....+....+.+|.-         .|.+
T Consensus       166 qpnmnn---------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw---------dVks  227 (464)
T KOG0284|consen  166 QPNMNN---------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW---------DVKS  227 (464)
T ss_pred             ccchhh---------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC---------Ccce
Confidence            977653         4555556668999999999999999999999999999998887777777653         4789


Q ss_pred             eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      +.|+|...  ++++++.|..|++||.+++ .++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+++
T Consensus       228 vdWHP~kg--LiasgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~  304 (464)
T KOG0284|consen  228 VDWHPTKG--LIASGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG  304 (464)
T ss_pred             eccCCccc--eeEEccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence            99999743  9999999999999999998 78999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEEEEECC-CCCEEEEeccCccC
Q 020454          299 KCSGSIRSIARHP-TLPIIASCGFLEAA  325 (326)
Q Consensus       299 ~~~~~v~~l~~~p-~~~~l~s~s~D~~~  325 (326)
                      | ...|+++.|+| ...++.+||.||.+
T Consensus       305 H-kkdv~~~~WhP~~~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  305 H-KKDVTSLTWHPLNESLFTSGGSDGSV  331 (464)
T ss_pred             c-hhhheeeccccccccceeeccCCCce
Confidence            8 99999999999 55689999999864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-32  Score=229.69  Aligned_cols=273  Identities=12%  Similarity=0.143  Sum_probs=225.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .++++...+-.+-++|.+..     ++...+-  .....+..+++... ..++|++++..+.+|+|+..+.... .+.  
T Consensus       294 ~~~l~vtaeQnl~l~d~~~l-----~i~k~iv--G~ndEI~Dm~~lG~-e~~~laVATNs~~lr~y~~~~~~c~-ii~--  362 (775)
T KOG0319|consen  294 SQLLLVTAEQNLFLYDEDEL-----TIVKQIV--GYNDEILDMKFLGP-EESHLAVATNSPELRLYTLPTSYCQ-IIP--  362 (775)
T ss_pred             CceEEEEccceEEEEEcccc-----EEehhhc--CCchhheeeeecCC-ccceEEEEeCCCceEEEecCCCceE-EEe--
Confidence            34555556667888877755     3433332  23344556666433 4458999999999999988665543 222  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------------c
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------------S  146 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------------~  146 (326)
                            +|+..|.++..+.        .+..|++|+.|.++++|.++....                            +
T Consensus       363 ------GH~e~vlSL~~~~--------~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv  428 (775)
T KOG0319|consen  363 ------GHTEAVLSLDVWS--------SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV  428 (775)
T ss_pred             ------Cchhheeeeeecc--------cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence                  7778898888554        445899999999999999844322                            5


Q ss_pred             cccccceEEEEEccC-------------------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC
Q 020454          147 AESSCSTVKSWNVCA-------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~  207 (326)
                      +.+.|.++++|.+..                   ...|++++++|+.+++|||+.|.+.+||+++..+....+++|+   
T Consensus       429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~---  505 (775)
T KOG0319|consen  429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT---  505 (775)
T ss_pred             EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc---
Confidence            677899999999865                   2359999999999999999999999999999999999999987   


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                            ..|-++.|+|.  .+.++++|.|++|+||.+.+. .++++|.+|...|..+.|-.+|.+|++++.||.|++|++
T Consensus       506 ------RGvw~V~Fs~~--dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  506 ------RGVWCVSFSKN--DQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             ------cceEEEEeccc--cceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence                  44679999985  349999999999999999988 789999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++++++.++.+| .+.|++++.+|....++|||.||.+
T Consensus       577 kt~eC~~tlD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i  613 (775)
T KOG0319|consen  577 KTNECEMTLDAH-NDRVWALSVSPLLDMFVTGGGDGRI  613 (775)
T ss_pred             cchhhhhhhhhc-cceeEEEeecCccceeEecCCCeEE
Confidence            999999999998 9999999999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7e-32  Score=200.20  Aligned_cols=259  Identities=11%  Similarity=0.097  Sum_probs=194.6

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      |.-+.+++.-.-.||+||+++. ...+.  ..|.  .+...+.+++|..  .++++++|+.||+++|||++.-...+.+.
T Consensus        50 pdk~~LAaa~~qhvRlyD~~S~-np~Pv--~t~e--~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR~~~  122 (311)
T KOG0315|consen   50 PDKKDLAAAGNQHVRLYDLNSN-NPNPV--ATFE--GHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ  122 (311)
T ss_pred             CCcchhhhccCCeeEEEEccCC-CCCce--eEEe--ccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccchhcc
Confidence            3345666667778999999987 22232  2444  3345566677653  45699999999999999998755544444


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                      .         ..+|..+...+        +...|+++..+|.|++||+.....        .+..-......|.++.+.|
T Consensus       123 ~---------~spVn~vvlhp--------nQteLis~dqsg~irvWDl~~~~c--------~~~liPe~~~~i~sl~v~~  177 (311)
T KOG0315|consen  123 H---------NSPVNTVVLHP--------NQTELISGDQSGNIRVWDLGENSC--------THELIPEDDTSIQSLTVMP  177 (311)
T ss_pred             C---------CCCcceEEecC--------CcceEEeecCCCcEEEEEccCCcc--------ccccCCCCCcceeeEEEcC
Confidence            3         36788777665        456899999999999999876532        1222233456899999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      +|.+|+.+...|...+|++-+......+....+   --.+...+..+.++|  ++++|++++.|.+++||+....-+...
T Consensus       178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k---~~ah~~~il~C~lSP--d~k~lat~ssdktv~iwn~~~~~kle~  252 (311)
T KOG0315|consen  178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHK---FQAHNGHILRCLLSP--DVKYLATCSSDKTVKIWNTDDFFKLEL  252 (311)
T ss_pred             CCcEEEEecCCccEEEEEccCCCccccceEhhh---eecccceEEEEEECC--CCcEEEeecCCceEEEEecCCceeeEE
Confidence            999999999999999999976432222211110   011346788889998  678999999999999999987644456


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~  309 (326)
                      .+++|+..+...+||.||+||++|+.|+.+++||++.++.+..+.+| ..+..+++.
T Consensus       253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh-~K~~vc~~l  308 (311)
T KOG0315|consen  253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH-HKAAVCVAL  308 (311)
T ss_pred             EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc-ccccEEEEe
Confidence            77889999999999999999999999999999999999999999999 444445554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-32  Score=228.94  Aligned_cols=291  Identities=14%  Similarity=0.108  Sum_probs=205.9

Q ss_pred             ccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454            6 TLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (326)
Q Consensus         6 ~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~   85 (326)
                      +.+..+|. ..+.+|+.||.++|||+..+     .....+.  .++..+.++.|.+.....+|++|..|++|++||+++.
T Consensus       110 ~ma~~~~g-~LlAtggaD~~v~VWdi~~~-----~~th~fk--G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~  181 (775)
T KOG0319|consen  110 TMAFDPTG-TLLATGGADGRVKVWDIKNG-----YCTHSFK--GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK  181 (775)
T ss_pred             EEEEcCCC-ceEEeccccceEEEEEeeCC-----EEEEEec--CCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence            33444444 77899999999999999987     4545555  4455556677776666678999999999999999755


Q ss_pred             ce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-------------------
Q 020454           86 DL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-------------------  145 (326)
Q Consensus        86 ~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-------------------  145 (326)
                      .. +..+.        .|...++++.+.+        ++..+++++.|..+.+||+.....                   
T Consensus       182 ~tcl~~~~--------~H~S~vtsL~~~~--------d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~  245 (775)
T KOG0319|consen  182 RTCLHTMI--------LHKSAVTSLAFSE--------DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREE  245 (775)
T ss_pred             chHHHHHH--------hhhhheeeeeecc--------CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechh
Confidence            43 22222        4557788887655        556777777777777777643221                   


Q ss_pred             --------ccccccceEEEEEccCC-------------------------------------------------------
Q 020454          146 --------SAESSCSTVKSWNVCAS-------------------------------------------------------  162 (326)
Q Consensus       146 --------~~~~~~~~~~~~~~~~~-------------------------------------------------------  162 (326)
                              .+.+..+.++.|+....                                                       
T Consensus       246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE  325 (775)
T KOG0319|consen  246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE  325 (775)
T ss_pred             cCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence                    00111222222222110                                                       


Q ss_pred             ----------------------------------------CceEEEEEcCCCCEEEEecCCCeEEEEECCCce-------
Q 020454          163 ----------------------------------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------  195 (326)
Q Consensus       163 ----------------------------------------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-------  195 (326)
                                                              +.|.+++...+|.+|++|++|+++++|.++++.       
T Consensus       326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a  405 (775)
T KOG0319|consen  326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA  405 (775)
T ss_pred             heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence                                                    014445433455566666666666666653220       


Q ss_pred             -------------------------------eeeeecC--CCC--C-----CCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454          196 -------------------------------KIWTAKP--PPK--N-----SLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (326)
Q Consensus       196 -------------------------------~~~~~~~--~~~--~-----~~~~~~~~~v~~~~~~p~~~~~~l~~~~~  235 (326)
                                                     .++.+..  ...  .     .....|...|++++.+|+  .+++++||.
T Consensus       406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~Sq  483 (775)
T KOG0319|consen  406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQ  483 (775)
T ss_pred             hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEeccc
Confidence                                           0111110  000  0     011235678999999995  449999999


Q ss_pred             CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCE
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  315 (326)
                      |++.+||++... +....+.+|...+.+|.|+|..+.++++|.|++|+||.+.+..++++|.|| ...|....|-.++..
T Consensus       484 DktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~~q  561 (775)
T KOG0319|consen  484 DKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNGKQ  561 (775)
T ss_pred             ccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCCcE
Confidence            999999999955 678899999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             EEEeccCcc
Q 020454          316 IASCGFLEA  324 (326)
Q Consensus       316 l~s~s~D~~  324 (326)
                      |+||+.||-
T Consensus       562 liS~~adGl  570 (775)
T KOG0319|consen  562 LISAGADGL  570 (775)
T ss_pred             EEeccCCCc
Confidence            999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-32  Score=223.31  Aligned_cols=278  Identities=14%  Similarity=0.103  Sum_probs=228.7

Q ss_pred             cccccCCCCCCC--eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454            3 RTTTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL   80 (326)
Q Consensus         3 ~~~~~~~~~~~~--~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~   80 (326)
                      |+..|.|..-.|  -.++++=.+|.|.|||.++.     .++..+.-.+.+..  ++.|..+.+  ++++|+.|..|+||
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-----tmVksfeV~~~PvR--a~kfiaRkn--Wiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-----TMVKSFEVSEVPVR--AAKFIARKN--WIVTGSDDMQIRVF   82 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccc-----eeeeeeeecccchh--hheeeeccc--eEEEecCCceEEEE
Confidence            344555555444  66899999999999999987     55544443222222  344443433  89999999999999


Q ss_pred             eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc
Q 020454           81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~  160 (326)
                      +..+++.+..++        .|.+.|++++..+        ...++++++.|-.|++|+.+..-.       ..+.+. .
T Consensus        83 nynt~ekV~~Fe--------AH~DyIR~iavHP--------t~P~vLtsSDDm~iKlW~we~~wa-------~~qtfe-G  138 (794)
T KOG0276|consen   83 NYNTGEKVKTFE--------AHSDYIRSIAVHP--------TLPYVLTSSDDMTIKLWDWENEWA-------CEQTFE-G  138 (794)
T ss_pred             ecccceeeEEee--------ccccceeeeeecC--------CCCeEEecCCccEEEEeeccCcee-------eeeEEc-C
Confidence            999999888887        6778999999877        556999999999999999876432       333444 3


Q ss_pred             CCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454          161 ASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (326)
Q Consensus       161 ~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v  239 (326)
                      |..-|.+++|+|.. +.+|+++.|++|++|.+.+..+.+++++|.         ..|+++.|-+..+..+|++|+.|.+|
T Consensus       139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe---------kGVN~Vdyy~~gdkpylIsgaDD~ti  209 (794)
T KOG0276|consen  139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE---------KGVNCVDYYTGGDKPYLISGADDLTI  209 (794)
T ss_pred             cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc---------cCcceEEeccCCCcceEEecCCCceE
Confidence            45579999999965 899999999999999999999999999876         55889999987777799999999999


Q ss_pred             EEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ++||..+. .+++++++|...|..+.|+|.-..|++|++||+++||+..+-++...+.-. .++|++|+-.+.+..++.|
T Consensus       210 KvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k~~~~i~vG  287 (794)
T KOG0276|consen  210 KVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHKGDGKIAVG  287 (794)
T ss_pred             EEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecCCCCeEEEe
Confidence            99999986 889999999999999999999999999999999999999998888877765 7899999999988888877


Q ss_pred             ccCcc
Q 020454          320 GFLEA  324 (326)
Q Consensus       320 s~D~~  324 (326)
                      ...|.
T Consensus       288 ~Deg~  292 (794)
T KOG0276|consen  288 FDEGS  292 (794)
T ss_pred             ccCCc
Confidence            66554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-31  Score=213.89  Aligned_cols=267  Identities=13%  Similarity=0.131  Sum_probs=208.7

Q ss_pred             eeeecCcccEEEEEecCC-cCC----CcceeeeccCCCC--CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454           17 ALTFDSLGLIKVIEARGE-HGG----VPKVVERWGDPHS--SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~-~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      +.+|..+-..|+|++... ..+    .++.+...+.+..  ...+  .+.+|+.++.+||+|+.||.++||+. +|.++.
T Consensus       194 lasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdV--T~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~  270 (524)
T KOG0273|consen  194 LASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDV--TSLDWNNDGTLLATGSEDGEARIWNK-DGNLIS  270 (524)
T ss_pred             hhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCc--ceEEecCCCCeEEEeecCcEEEEEec-Cchhhh
Confidence            567788888999998741 011    1111112222221  2333  34466777889999999999999998 677767


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  169 (326)
                      .+.        .|.+||.++.+-.        .+++|++++.|+++.+||.....        ....+.. +..+-..+.
T Consensus       271 tl~--------~HkgPI~slKWnk--------~G~yilS~~vD~ttilwd~~~g~--------~~q~f~~-~s~~~lDVd  325 (524)
T KOG0273|consen  271 TLG--------QHKGPIFSLKWNK--------KGTYILSGGVDGTTILWDAHTGT--------VKQQFEF-HSAPALDVD  325 (524)
T ss_pred             hhh--------ccCCceEEEEEcC--------CCCEEEeccCCccEEEEeccCce--------EEEeeee-ccCCccceE
Confidence            766        6779999998755        67899999999999999965432        1122222 233345566


Q ss_pred             EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      |- +..-|++++.|+.|+++.+...+++.++.+|.         ..|.++.|.|  .+.+|++++.|++++||..... .
T Consensus       326 W~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~---------g~V~alk~n~--tg~LLaS~SdD~TlkiWs~~~~-~  392 (524)
T KOG0273|consen  326 WQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH---------GEVNALKWNP--TGSLLASCSDDGTLKIWSMGQS-N  392 (524)
T ss_pred             Ee-cCceEeecCCCceEEEEEecCCCcceeeeccc---------CceEEEEECC--CCceEEEecCCCeeEeeecCCC-c
Confidence            65 34667899999999999999999998888866         5588999998  4669999999999999998865 5


Q ss_pred             ceeEEeecCCceEEEEecCC---------CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          250 PVMSFDFRETPIKAVAEEPD---------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~---------~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ....+..|...|..+.|+|+         +..+++++.|++|++||+..+.+++.|..| ..+|.+++|+|+++++|+|+
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g~ylAsGs  471 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNGRYLASGS  471 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCCcEEEecC
Confidence            68899999999999999986         347889999999999999999999999988 99999999999999999999


Q ss_pred             cCccC
Q 020454          321 FLEAA  325 (326)
Q Consensus       321 ~D~~~  325 (326)
                      .||.+
T Consensus       472 ~dg~V  476 (524)
T KOG0273|consen  472 LDGCV  476 (524)
T ss_pred             CCCee
Confidence            99964

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.4e-31  Score=206.80  Aligned_cols=277  Identities=13%  Similarity=0.080  Sum_probs=208.4

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee-CCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD-SQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      +-.+++|.+||.+|+|+..+.      ......  .+...+..+.+.. ++....|++++.|.++++|..+.++.+....
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk------~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~  186 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGK------SIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL  186 (423)
T ss_pred             CceEEEeecCCeeEEEecCCc------eEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence            467999999999999999876      222332  2333333333332 2333479999999999999998776544332


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc--cc--------------ccccceEEE
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SA--------------ESSCSTVKS  156 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--~~--------------~~~~~~~~~  156 (326)
                      ..    .++|...|.++....        ++..+++++.|..+.+|+......  ..              ....+...+
T Consensus       187 ~~----~~GHk~~V~sVsv~~--------sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  187 KV----CRGHKRSVDSVSVDS--------SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             hH----hcccccceeEEEecC--------CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            21    136778888877654        678999999999999999332211  00              011122223


Q ss_pred             EEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454          157 WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       157 ~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                      .-..|.++|.++.|.+ ...+++++.|.+|+.||+.++..+..+...          ....++.++|  ..++|++|+.|
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~----------ksl~~i~~~~--~~~Ll~~gssd  321 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN----------KSLNCISYSP--LSKLLASGSSD  321 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC----------cceeEeeccc--ccceeeecCCC
Confidence            3335567899999997 778889999999999999998887765442          3467888888  44599999999


Q ss_pred             CeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEECCC
Q 020454          237 HQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       237 g~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      ..+++||+|++..  +.+++.+|...|.++.|+|... +|++|+.|+++++||+++.+ +++.+.+| ...|.++.|+ +
T Consensus       322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~-~  399 (423)
T KOG0313|consen  322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN-E  399 (423)
T ss_pred             CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc-C
Confidence            9999999997533  4567889999999999999755 56699999999999999887 89999998 9999999996 4


Q ss_pred             CCEEEEeccCccC
Q 020454          313 LPIIASCGFLEAA  325 (326)
Q Consensus       313 ~~~l~s~s~D~~~  325 (326)
                      +.+|+|||.|...
T Consensus       400 ~~~IvSGGaD~~l  412 (423)
T KOG0313|consen  400 GGLIVSGGADNKL  412 (423)
T ss_pred             CceEEeccCcceE
Confidence            5689999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-30  Score=197.76  Aligned_cols=234  Identities=15%  Similarity=0.149  Sum_probs=192.9

Q ss_pred             EeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454           58 SIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      ++.|..+.++|++++.||.+.|||.-+..-...+..        ....|...++.+        .++.++.++.|+...|
T Consensus        60 ~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--------~s~WVMtCA~sP--------Sg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   60 AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--------PSSWVMTCAYSP--------SGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------CceeEEEEEECC--------CCCeEEecCcCceeEE
Confidence            345566677999999999999999876665555442        236788888766        6778999999999999


Q ss_pred             EEccccccccccccceEEEE--EccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454          138 RSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  215 (326)
                      |++...+.     ++.+++-  -..|.+-+.|..|-+ ...|+|++-|.++.+||+++++.+..+.+|.         ..
T Consensus       124 y~ls~~d~-----~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~---------gD  188 (343)
T KOG0286|consen  124 YPLSTRDA-----EGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHT---------GD  188 (343)
T ss_pred             Eecccccc-----cccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCc---------cc
Confidence            99885421     2222221  234567799999987 5567799999999999999999999999887         44


Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~  295 (326)
                      |.++.++|. +++.|++|+.|+..++||+|.+ ..+++|.+|++.|++|+|.|+|.-+++|+.|++.++||++..+.+..
T Consensus       189 V~slsl~p~-~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~  266 (343)
T KOG0286|consen  189 VMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV  266 (343)
T ss_pred             EEEEecCCC-CCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence            778899986 6779999999999999999988 78999999999999999999999999999999999999999998888


Q ss_pred             Ecce-ecceEEEEEECCCCCEEEEeccCcc
Q 020454          296 FIGK-CSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       296 ~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      |... ...+|++++|+..|++|++|..|..
T Consensus       267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~  296 (343)
T KOG0286|consen  267 YSHDSIICGITSVAFSKSGRLLFAGYDDFT  296 (343)
T ss_pred             eccCcccCCceeEEEcccccEEEeeecCCc
Confidence            7621 2568999999999999999977754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.2e-32  Score=209.84  Aligned_cols=225  Identities=14%  Similarity=0.271  Sum_probs=194.0

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      +-++.+.+|++|+.|++|+|||+.+++++.++.        +|...+.++++.+        ...+++++++|+.|+.||
T Consensus       158 avdP~n~wf~tgs~DrtikIwDlatg~Lkltlt--------Ghi~~vr~vavS~--------rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLT--------GHIETVRGVAVSK--------RHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eeCCCceeEEecCCCceeEEEEcccCeEEEeec--------chhheeeeeeecc--------cCceEEEecCCCeeEEEe
Confidence            334556799999999999999999999987776        5557888888766        345999999999999999


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      ++.++        .|+-|. .+-..|+|++.+|.-..|++|+.|.++++||+++...+..+.+|.         ..|.++
T Consensus       222 Le~nk--------vIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~---------~~V~~V  283 (460)
T KOG0285|consen  222 LEYNK--------VIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT---------NPVASV  283 (460)
T ss_pred             chhhh--------hHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC---------CcceeE
Confidence            98765        344443 345689999999999999999999999999999999999999987         557888


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~  299 (326)
                      .+.|. ++ .+++|+.|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..|+.++.+.+|
T Consensus       284 ~~~~~-dp-qvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  284 MCQPT-DP-QVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             EeecC-CC-ceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc
Confidence            88875 34 7999999999999999988 5577888999999999999999999998888 7999999999999999998


Q ss_pred             ecceEEEEEECCCCCEEEEeccCcc
Q 020454          300 CSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       300 ~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                       ..-|++++.+.|+ ++++|+..|.
T Consensus       360 -~~iintl~~nsD~-v~~~G~dng~  382 (460)
T KOG0285|consen  360 -NAIINTLSVNSDG-VLVSGGDNGS  382 (460)
T ss_pred             -cceeeeeeeccCc-eEEEcCCceE
Confidence             9999999998876 7778876654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-30  Score=218.92  Aligned_cols=260  Identities=17%  Similarity=0.250  Sum_probs=209.5

Q ss_pred             ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCC
Q 020454           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA   99 (326)
Q Consensus        20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~   99 (326)
                      ++.-|++-||+....     ..+.  ..+.+...+.++  +.++++.++++|+.||.|+|||...+-+..++.       
T Consensus       326 ~~klgQLlVweWqsE-----sYVl--KQQgH~~~i~~l--~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-------  389 (893)
T KOG0291|consen  326 CSKLGQLLVWEWQSE-----SYVL--KQQGHSDRITSL--AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-------  389 (893)
T ss_pred             CCccceEEEEEeecc-----ceee--eccccccceeeE--EECCCCcEEEeccCCCcEEEEeccCceEEEEec-------
Confidence            445699999999976     3322  233444444433  445667799999999999999998888877776       


Q ss_pred             CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  179 (326)
                       .|...++++.+..        .++.+++.+-||+|+.||+....        ..+.+....+....|++.+|.|.++..
T Consensus       390 -eHts~Vt~v~f~~--------~g~~llssSLDGtVRAwDlkRYr--------NfRTft~P~p~QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  390 -EHTSGVTAVQFTA--------RGNVLLSSSLDGTVRAWDLKRYR--------NFRTFTSPEPIQFSCVAVDPSGELVCA  452 (893)
T ss_pred             -cCCCceEEEEEEe--------cCCEEEEeecCCeEEeeeecccc--------eeeeecCCCceeeeEEEEcCCCCEEEe
Confidence             5668899998766        56789999999999999987644        567777777778899999999999999


Q ss_pred             ecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454          180 GGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (326)
Q Consensus       180 g~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  258 (326)
                      |+.|.. |.+|++++|+.+-.+++|.         .+|.+++|+|  .+..|++++.|++||+||+-.....+.+++. .
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHE---------gPVs~l~f~~--~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-~  520 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHE---------GPVSGLSFSP--DGSLLASGSWDKTVRIWDIFSSSGTVETLEI-R  520 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCC---------CcceeeEEcc--ccCeEEeccccceEEEEEeeccCceeeeEee-c
Confidence            999866 9999999999999999876         6788999998  5569999999999999998755445566644 4


Q ss_pred             CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-------------------ecceEEEEEECCCCCEEEEe
Q 020454          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------CSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-------------------~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ..+..++|+|+|+.|++++.||.|.+||.+.+.....+.+.                   .....+.|++++||.+|++|
T Consensus       521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg  600 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG  600 (893)
T ss_pred             cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence            77899999999999999999999999999876554333321                   12468899999999999999


Q ss_pred             ccCcc
Q 020454          320 GFLEA  324 (326)
Q Consensus       320 s~D~~  324 (326)
                      |..+.
T Consensus       601 G~sn~  605 (893)
T KOG0291|consen  601 GESNS  605 (893)
T ss_pred             CCccc
Confidence            97654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.2e-30  Score=208.97  Aligned_cols=264  Identities=17%  Similarity=0.210  Sum_probs=206.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.+|.+++|++..+     +.......+.  ..+..+.+.  +.++++++++.||.|++|++.+++....+.  
T Consensus        22 ~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~~~--~~i~~~~~~--~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--   90 (289)
T cd00200          22 KLLATGSGDGTIKVWDLETG-----ELLRTLKGHT--GPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVRTLT--   90 (289)
T ss_pred             CEEEEeecCcEEEEEEeeCC-----CcEEEEecCC--cceeEEEEC--CCCCEEEEEcCCCeEEEEEcCcccceEEEe--
Confidence            56888889999999999876     2322332222  223344443  344689999999999999998766555554  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...+.++.+.+        ....+++++.+|.+.+|++....        .+..+. .+...+.++.++|++
T Consensus        91 ------~~~~~i~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~  147 (289)
T cd00200          91 ------GHTSYVSSVAFSP--------DGRILSSSSRDKTIKVWDVETGK--------CLTTLR-GHTDWVNSVAFSPDG  147 (289)
T ss_pred             ------ccCCcEEEEEEcC--------CCCEEEEecCCCeEEEEECCCcE--------EEEEec-cCCCcEEEEEEcCcC
Confidence                  3345788888755        33566666669999999987432        333333 346689999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      .++++++.|+.|++||+++++.+..+..+.         ..+.++.|+|  +++.+++++.++.|++||++.. +++..+
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~-~~~~~~  215 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTGKCVATLTGHT---------GEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTG-KCLGTL  215 (289)
T ss_pred             CEEEEEcCCCcEEEEEccccccceeEecCc---------cccceEEECC--CcCEEEEecCCCcEEEEECCCC-ceecch
Confidence            999998889999999999877766655432         4578899988  4558888888999999999976 567777


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..+...+.+++|+|++.++++++.+|.|++||+.+++....+..| ...|.+++|+|++++|++++.||.+
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i  285 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTI  285 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeE
Confidence            778889999999999888889888999999999999999999887 8899999999999999999999865

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.8e-30  Score=216.58  Aligned_cols=283  Identities=16%  Similarity=0.176  Sum_probs=218.3

Q ss_pred             CCeeeeeecCcccEEEEEecCCcC---CCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHG---GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      |..++++.+-...+.||...+...   .++.+..++.  .+..-+.++  .|+.+.++|++|+.|-++++|.+...+-..
T Consensus       106 Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~--g~fddi~si--~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~  181 (893)
T KOG0291|consen  106 PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYL--GHFDDITSI--DWSDDSRLLVTGSRDLSARLFGVDGNKNLF  181 (893)
T ss_pred             CCCcEEEEEecceeEEEecCcchhcccCcceEeeeec--CCccceeEE--EeccCCceEEeccccceEEEEEeccccccc
Confidence            446777777888999999887622   1222322332  333344444  445556699999999999999997555434


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc------------------------ccc
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV------------------------TKV  145 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~------------------------~~~  145 (326)
                      .+..      ..|.++|.+.-+-.        +...+++.+.||.+.+|..+.                        ++.
T Consensus       182 ~~~l------~gHkd~VvacfF~~--------~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek  247 (893)
T KOG0291|consen  182 TYAL------NGHKDYVVACFFGA--------NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK  247 (893)
T ss_pred             eEec------cCCCcceEEEEecc--------CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence            4333      27778898665433        445799999999999998871                        110


Q ss_pred             ----------------------------------------------------------------------------cccc
Q 020454          146 ----------------------------------------------------------------------------SAES  149 (326)
Q Consensus       146 ----------------------------------------------------------------------------~~~~  149 (326)
                                                                                                  ..++
T Consensus       248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~  327 (893)
T KOG0291|consen  248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS  327 (893)
T ss_pred             hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence                                                                                        1122


Q ss_pred             ccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          150 SCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       150 ~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      .-+.+.+|+...          ...+.+++++|||+++|+|+.|+.|+|||..++-++.++..|.         ..|+++
T Consensus       328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt---------s~Vt~v  398 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT---------SGVTAV  398 (893)
T ss_pred             ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC---------CceEEE
Confidence            334555665432          2348899999999999999999999999999999988888776         668999


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCc-EEEEECCCCeEEEEEc
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI  297 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~-v~iwd~~~~~~~~~~~  297 (326)
                      .|+.  .++.+++.+.||+|+.||+... +..+++... .-+..+++..|.|..+.+|+.|.. |++|++++|+++..+.
T Consensus       399 ~f~~--~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  399 QFTA--RGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EEEe--cCCEEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence            9997  5679999999999999999977 567777654 346788899999999999999874 9999999999999999


Q ss_pred             ceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          298 GKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      || ++||.+|+|+|.+..|+|+|+|++++
T Consensus       476 GH-EgPVs~l~f~~~~~~LaS~SWDkTVR  503 (893)
T KOG0291|consen  476 GH-EGPVSGLSFSPDGSLLASGSWDKTVR  503 (893)
T ss_pred             CC-CCcceeeEEccccCeEEeccccceEE
Confidence            99 99999999999999999999999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-31  Score=221.13  Aligned_cols=230  Identities=17%  Similarity=0.202  Sum_probs=199.7

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      +-++..++++++--+|.|.|||.++...++.++.        .+-||++..+..        ..+-+++|+.|..|++|+
T Consensus        20 d~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------~~~PvRa~kfia--------RknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen   20 DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------SEVPVRAAKFIA--------RKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             ecCCCCceEEEeeecCeeEEEecccceeeeeeee--------cccchhhheeee--------ccceEEEecCCceEEEEe
Confidence            3456677999999999999999998888888774        235777666665        456899999999999999


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceee
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTS  218 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~  218 (326)
                      ++..+        .++.+.. |..-|++++.||...++++++.|-+|++||.+..- +...+.+|.         .+|..
T Consensus        84 ynt~e--------kV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~---------HyVMq  145 (794)
T KOG0276|consen   84 YNTGE--------KVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE---------HYVMQ  145 (794)
T ss_pred             cccce--------eeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc---------eEEEE
Confidence            98765        6777774 57899999999999999999999999999998653 344455543         67999


Q ss_pred             eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC--CeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~--~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      ++|.|. |.+.+++++-|++|++|.+.+. .|..++++|+..|++|.|-+-|  .+|++|+.|..++|||.++..+++++
T Consensus       146 v~fnPk-D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  146 VAFNPK-DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             EEecCC-CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence            999997 5669999999999999999977 7899999999999999998754  69999999999999999999999999


Q ss_pred             cceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          297 IGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       297 ~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      .|| ...|..+.|+|.-++|+|||.||+++
T Consensus       224 eGH-t~Nvs~v~fhp~lpiiisgsEDGTvr  252 (794)
T KOG0276|consen  224 EGH-TNNVSFVFFHPELPIIISGSEDGTVR  252 (794)
T ss_pred             hcc-cccceEEEecCCCcEEEEecCCccEE
Confidence            999 99999999999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-30  Score=203.11  Aligned_cols=273  Identities=16%  Similarity=0.128  Sum_probs=205.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..++||+.|..-.+|++.++     .......  .+...+.++.|..  ++.+||+|..+|.|+||+..++.....+.. 
T Consensus        77 ~l~aTGGgDD~AflW~~~~g-----e~~~elt--gHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~~stg~~~~~~~~-  146 (399)
T KOG0296|consen   77 NLVATGGGDDLAFLWDISTG-----EFAGELT--GHKDSVTCCSFSH--DGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-  146 (399)
T ss_pred             ceEEecCCCceEEEEEccCC-----cceeEec--CCCCceEEEEEcc--CceEEEecCCCccEEEEEcccCceEEEeec-
Confidence            55788999999999999988     3333333  3444555555543  455999999999999999998887666641 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                             .-..+.=+.+.+        ....+++|+.||.+.+|.+....        ..+++. .+..++++=.|.|+|
T Consensus       147 -------e~~dieWl~WHp--------~a~illAG~~DGsvWmw~ip~~~--------~~kv~~-Gh~~~ct~G~f~pdG  202 (399)
T KOG0296|consen  147 -------EVEDIEWLKWHP--------RAHILLAGSTDGSVWMWQIPSQA--------LCKVMS-GHNSPCTCGEFIPDG  202 (399)
T ss_pred             -------ccCceEEEEecc--------cccEEEeecCCCcEEEEECCCcc--------eeeEec-CCCCCcccccccCCC
Confidence                   113344355444        55789999999999999987642        445554 357789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCC---CCC---------------------------------------CCcCC
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPP---KNS---------------------------------------LGIFT  212 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~---~~~---------------------------------------~~~~~  212 (326)
                      +.++++..|++|++||+.+++++..+....   ..+                                       +...+
T Consensus       203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ  282 (399)
T ss_pred             ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence            999999999999999999998877665110   000                                       00011


Q ss_pred             CCceeeeEEeecC-CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          213 PTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       213 ~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                      ...+.++.+.|.. .-.++|+|+.||+|.|||+... . ++..-.|+..|+.+.|-+ ..+|++++.+|.|+.||.++|+
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-T-LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccc-h-hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence            1123333343321 1136788999999999999876 4 344446778899999988 7899999999999999999999


Q ss_pred             EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++..+.|| ..+|.+++++|+.++++|+|.|+.|
T Consensus       360 l~~~y~GH-~~~Il~f~ls~~~~~vvT~s~D~~a  392 (399)
T KOG0296|consen  360 LKFTYTGH-QMGILDFALSPQKRLVVTVSDDNTA  392 (399)
T ss_pred             eEEEEecC-chheeEEEEcCCCcEEEEecCCCeE
Confidence            99999999 9999999999999999999999876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-30  Score=219.54  Aligned_cols=271  Identities=14%  Similarity=0.130  Sum_probs=223.8

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      .++..+..+.+++|+..+.     +-+.+...    ..+++.+|.  +.++++++|..+|.+.+||+....++..++   
T Consensus       386 ~~~~Sga~~SikiWn~~t~-----kciRTi~~----~y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~---  451 (888)
T KOG0306|consen  386 ILLASGAGESIKIWNRDTL-----KCIRTITC----GYILASKFV--PGDRYIVLGTKNGELQVFDLASASLVETIR---  451 (888)
T ss_pred             eeeeecCCCcEEEEEccCc-----ceeEEecc----ccEEEEEec--CCCceEEEeccCCceEEEEeehhhhhhhhh---
Confidence            3555566789999999976     44444432    255666665  345589999999999999998888877766   


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE---ccCCCceEEEEEcC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVDI  172 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~  172 (326)
                           .|++.|..++..+        ++..+++++.|.+|++|++.......+.....+.+-.   +.-...|.|++++|
T Consensus       452 -----AHdgaIWsi~~~p--------D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  452 -----AHDGAIWSISLSP--------DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             -----ccccceeeeeecC--------CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence                 6779999988766        6678999999999999998765433233322222211   11246799999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      ++++||++-.|+++++|-+.+.+....+.+|.         -+|.++..+|  ++++++||+.|+.|++|-+.-+ .+-+
T Consensus       519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHk---------LPV~smDIS~--DSklivTgSADKnVKiWGLdFG-DCHK  586 (888)
T KOG0306|consen  519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK---------LPVLSMDISP--DSKLIVTGSADKNVKIWGLDFG-DCHK  586 (888)
T ss_pred             CCcEEEEEeccCeEEEEEecceeeeeeecccc---------cceeEEeccC--CcCeEEeccCCCceEEeccccc-hhhh
Confidence            99999999999999999999999888888876         4588899998  6779999999999999999977 6778


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      ++-.|+..|.++.|-|+...+++++.|+.|+-||-..-+.++.+.+| ...|++++..|+|.+++|+|.|..++
T Consensus       587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~~G~~vvs~shD~sIR  659 (888)
T KOG0306|consen  587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSPNGSFVVSSSHDKSIR  659 (888)
T ss_pred             hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcCCCCeEEeccCCceeE
Confidence            88899999999999999999999999999999999999999999998 99999999999999999999998753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.4e-33  Score=214.48  Aligned_cols=255  Identities=14%  Similarity=0.232  Sum_probs=200.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|..|.+|+|||..+.     .......  .+...++++.++..    ++++|+.|.+|++||.++++.+..+.  
T Consensus       208 ~kiVSGlrDnTikiWD~n~~-----~c~~~L~--GHtGSVLCLqyd~r----viisGSSDsTvrvWDv~tge~l~tli--  274 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSL-----ECLKILT--GHTGSVLCLQYDER----VIVSGSSDSTVRVWDVNTGEPLNTLI--  274 (499)
T ss_pred             hhhhcccccCceEEeccccH-----HHHHhhh--cCCCcEEeeeccce----EEEecCCCceEEEEeccCCchhhHHh--
Confidence            56899999999999998865     2211222  34444555555433    79999999999999999999887766  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|...|.++.+          ..+++++++.|..+.+|++....      +-+++..-..+...|+.+.|+  .
T Consensus       275 ------hHceaVLhlrf----------~ng~mvtcSkDrsiaVWdm~sps------~it~rrVLvGHrAaVNvVdfd--~  330 (499)
T KOG0281|consen  275 ------HHCEAVLHLRF----------SNGYMVTCSKDRSIAVWDMASPT------DITLRRVLVGHRAAVNVVDFD--D  330 (499)
T ss_pred             ------hhcceeEEEEE----------eCCEEEEecCCceeEEEeccCch------HHHHHHHHhhhhhheeeeccc--c
Confidence                  45578988887          55899999999999999987533      112222223445678888885  5


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      +++++++.|.+|++|++.+++.+..+.+|+..         |.++.+    .++++++|+.|.+|++||+..+ .++..+
T Consensus       331 kyIVsASgDRTikvW~~st~efvRtl~gHkRG---------IAClQY----r~rlvVSGSSDntIRlwdi~~G-~cLRvL  396 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG---------IACLQY----RDRLVVSGSSDNTIRLWDIECG-ACLRVL  396 (499)
T ss_pred             ceEEEecCCceEEEEeccceeeehhhhccccc---------ceehhc----cCeEEEecCCCceEEEEecccc-HHHHHH
Confidence            79999999999999999999999999888744         444444    4669999999999999999988 678999


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---------EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++|+.-|.++.|  |.+.|++|..||+|++||+.++.         ++..+..| .+.|..+.|  |...|++++.|.++
T Consensus       397 eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsssHddtI  471 (499)
T KOG0281|consen  397 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSSHDDTI  471 (499)
T ss_pred             hchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEeccCCCeE
Confidence            999999999999  67899999999999999998753         23445566 999999999  55678888887653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.5e-29  Score=232.61  Aligned_cols=269  Identities=13%  Similarity=0.117  Sum_probs=200.3

Q ss_pred             eeeeeecCcccEEEEEecCCc---CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           15 LRALTFDSLGLIKVIEARGEH---GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      -.+++|+.||.|+||+.....   ............   ...+..++|... .+.+|++++.||+|++||+.+++.+..+
T Consensus       496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~~  571 (793)
T PLN00181        496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTEM  571 (793)
T ss_pred             CEEEEEeCCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            458899999999999976420   000000111111   123344555322 2457999999999999999888776665


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      .        .|.+.|.++.+.+.       ++..|++++.||.|++||+....        .+..+.  ....+.++.|+
T Consensus       572 ~--------~H~~~V~~l~~~p~-------~~~~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~~  626 (793)
T PLN00181        572 K--------EHEKRVWSIDYSSA-------DPTLLASGSDDGSVKLWSINQGV--------SIGTIK--TKANICCVQFP  626 (793)
T ss_pred             c--------CCCCCEEEEEEcCC-------CCCEEEEEcCCCEEEEEECCCCc--------EEEEEe--cCCCeEEEEEe
Confidence            4        56688999987541       34689999999999999986533        233333  24578899995


Q ss_pred             -CCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC--
Q 020454          172 -ISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--  247 (326)
Q Consensus       172 -~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~--  247 (326)
                       +++.+|++|+.|+.|++||+++.+ ++..+.+|.         ..|+.+.|.   ++.+|++++.|++|++||++..  
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~---------~~V~~v~f~---~~~~lvs~s~D~~ikiWd~~~~~~  694 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS---------KTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSIS  694 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC---------CCEEEEEEe---CCCEEEEEECCCEEEEEeCCCCcc
Confidence             468999999999999999998765 344444433         568899996   3458999999999999998742  


Q ss_pred             ---CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE-------------cceecceEEEEEECC
Q 020454          248 ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------------IGKCSGSIRSIARHP  311 (326)
Q Consensus       248 ---~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-------------~~~~~~~v~~l~~~p  311 (326)
                         ..++.++.+|...+..++|+|++.+|++|+.||.|++|+.....++..+             ..+ ...|.+++|+|
T Consensus       695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~  773 (793)
T PLN00181        695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRG  773 (793)
T ss_pred             ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcC
Confidence               2467888899999999999999999999999999999998765443222             123 56799999999


Q ss_pred             CCCEEEEeccCccC
Q 020454          312 TLPIIASCGFLEAA  325 (326)
Q Consensus       312 ~~~~l~s~s~D~~~  325 (326)
                      ++..|++|+.||.+
T Consensus       774 ~~~~lva~~~dG~I  787 (793)
T PLN00181        774 QSSTLVAANSTGNI  787 (793)
T ss_pred             CCCeEEEecCCCcE
Confidence            99999999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=1.1e-30  Score=222.13  Aligned_cols=230  Identities=14%  Similarity=0.150  Sum_probs=192.0

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...++.++|.+  +.++|++++.|++||+|.+.+...+-.+.        +|..||..+.+.+        .+-+++++
T Consensus       450 H~GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P--------~GyYFata  511 (707)
T KOG0263|consen  450 HSGPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------GHLAPVWDVQFAP--------RGYYFATA  511 (707)
T ss_pred             CCCceeeeeecc--cccceeeccCCcceeeeecccceeEEEec--------CCCcceeeEEecC--------CceEEEec
Confidence            344555666654  45589999999999999998887766666        6668888777654        56789999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      +.|++.++|..+...        ++|++. .+...|.|++|||+.+|+++|+.|.++++||+.++..+..+.+|.     
T Consensus       512 s~D~tArLWs~d~~~--------PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-----  577 (707)
T KOG0263|consen  512 SHDQTARLWSTDHNK--------PLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-----  577 (707)
T ss_pred             CCCceeeeeecccCC--------chhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-----
Confidence            999999999966533        556654 456789999999999999999999999999999999999888866     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                          ..|++++|+|  +|++|++|+.||.|++||+.++ .++..+..|.+.|.++.|+.+|..|++|+.|.+|++||+..
T Consensus       578 ----~~V~al~~Sp--~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  578 ----GPVTALAFSP--CGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ----CceEEEEEcC--CCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence                6799999999  7889999999999999999987 67889999999999999999999999999999999999864


Q ss_pred             C------------------------eEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          290 G------------------------KLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       290 ~------------------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      -                        .++..|... ..+|.+|.|...+-.|+.|
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK-~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  651 VIELLNLGHISTSNSAITQENNASSLLLGSFYTK-NTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             hcccccccccccccccccccCCCCcceeeeeeec-CceEEEEEEeccceeEEec
Confidence            2                        145566665 7789999998766555544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.3e-31  Score=205.30  Aligned_cols=227  Identities=16%  Similarity=0.232  Sum_probs=194.0

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      .+...++++++.|++|++||..++++...++        +|.+.+..+.+..        .+..+++++.|=.+++||++
T Consensus       117 hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr--------GHt~sv~di~~~a--------~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  117 HPSEALVVSASEDATIKVFDTETGELERSLR--------GHTDSVFDISFDA--------SGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             ccCceEEEEecCCceEEEEEccchhhhhhhh--------ccccceeEEEEec--------CccEEEecCCccchhheeHH
Confidence            4555578888999999999999999966666        6667788888755        56789999999999999987


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                      ....       .++. ...+...|.++.|-|.+.++++++.|.+|+.|++.++-+++++.+|.         .||..+..
T Consensus       181 ~~~~-------c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~---------ewvr~v~v  243 (406)
T KOG0295|consen  181 TFFR-------CIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS---------EWVRMVRV  243 (406)
T ss_pred             HHHH-------HHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch---------HhEEEEEe
Confidence            6321       1111 12445679999999999999999999999999999999999988865         58888876


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC---------------CCeEEEEcCCCcEEEEE
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD---------------SFNIYIGNGSGDLASVD  286 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~---------------~~~l~~g~~dg~v~iwd  286 (326)
                      +  .||.++++++.|.+|++|-+.+. ++...+..|+.+|.+++|.|.               +.++.+++.|++|++||
T Consensus       244 ~--~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  244 N--QDGTIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             c--CCeeEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence            5  48889999999999999999976 667788899999999999752               25889999999999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.++.++.++.+| ...|+.++|+|.|+||+||..|++.
T Consensus       321 v~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktl  358 (406)
T KOG0295|consen  321 VSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTL  358 (406)
T ss_pred             ccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcE
Confidence            9999999999998 9999999999999999999999975

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=4.7e-30  Score=199.82  Aligned_cols=263  Identities=13%  Similarity=0.108  Sum_probs=212.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.|++++|||+.++     ++..+...+  ...+-.+.+  +...+||++++.|+.|+.||++.+++++.+.  
T Consensus       164 ~wf~tgs~DrtikIwDlatg-----~LkltltGh--i~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh--  232 (460)
T KOG0285|consen  164 EWFATGSADRTIKIWDLATG-----QLKLTLTGH--IETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH--  232 (460)
T ss_pred             eeEEecCCCceeEEEEcccC-----eEEEeecch--hheeeeeee--cccCceEEEecCCCeeEEEechhhhhHHHhc--
Confidence            56899999999999999988     665555533  333333333  2345699999999999999999999988877  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            +|-..|.++...+        ..+.|++++.|..+++||++...        .+.+.. .+..+|..+.+.|..
T Consensus       233 ------GHlS~V~~L~lhP--------Tldvl~t~grDst~RvWDiRtr~--------~V~~l~-GH~~~V~~V~~~~~d  289 (460)
T KOG0285|consen  233 ------GHLSGVYCLDLHP--------TLDVLVTGGRDSTIRVWDIRTRA--------SVHVLS-GHTNPVASVMCQPTD  289 (460)
T ss_pred             ------cccceeEEEeccc--------cceeEEecCCcceEEEeeecccc--------eEEEec-CCCCcceeEEeecCC
Confidence                  5667888898766        67799999999999999998765        333333 357789999999988


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ..+++|+.|++|++||++.++....+..|.         ..|.+++.+|..  +.||+++.| .|+-|++..+ ..+..+
T Consensus       290 pqvit~S~D~tvrlWDl~agkt~~tlt~hk---------ksvral~lhP~e--~~fASas~d-nik~w~~p~g-~f~~nl  356 (460)
T KOG0285|consen  290 PQVITGSHDSTVRLWDLRAGKTMITLTHHK---------KSVRALCLHPKE--NLFASASPD-NIKQWKLPEG-EFLQNL  356 (460)
T ss_pred             CceEEecCCceEEEeeeccCceeEeeeccc---------ceeeEEecCCch--hhhhccCCc-cceeccCCcc-chhhcc
Confidence            889999999999999999999888877765         457888999853  378888766 4899999977 557778


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-----ce--ecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GK--CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-----~~--~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+|...|.+++...|+ ++++|+.+|.+.+||.++|-..+..+     |-  -+..|.+.+|...+..|+||..|+++
T Consensus       357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtI  433 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTI  433 (460)
T ss_pred             ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcce
Confidence            8999999999987665 88899999999999999986554432     10  14568899999999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1e-28  Score=201.17  Aligned_cols=285  Identities=16%  Similarity=0.134  Sum_probs=215.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeecc-CCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      -++++.+.||.+.+||-.++     ..+..+. +..+...+++++|.++  +..+++++.|.+++|||+.+++++.++..
T Consensus       203 ~~Fat~gsDgki~iyDGktg-----e~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTG-----EKVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             CeEEEecCCccEEEEcCCCc-----cEEEEecCCCCccccEEEEEECCC--CceEEEecCCceEEEEEeeccceEEEeec
Confidence            78999999999999998877     4444554 4566777888887644  44799999999999999988776555432


Q ss_pred             cCC-----------------------------------CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEE
Q 020454           94 AGD-----------------------------------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR  138 (326)
Q Consensus        94 ~~~-----------------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~  138 (326)
                      -..                                   ....+|...|++|...+        +..+|++++.||.|.-|
T Consensus       276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~--------d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP--------DGKTIYSGSYDGHINSW  347 (603)
T ss_pred             CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC--------CCCEEEeeccCceEEEE
Confidence            100                                   01245677788887655        66899999999999999


Q ss_pred             Ecccccc-----------------------ccccccceEEEEEccCCC--------------------------------
Q 020454          139 SIEVTKV-----------------------SAESSCSTVKSWNVCASG--------------------------------  163 (326)
Q Consensus       139 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~--------------------------------  163 (326)
                      +......                       .+.+.|.++++......+                                
T Consensus       348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            9765321                       122344455554331110                                


Q ss_pred             -----------------ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          164 -----------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       164 -----------------~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                                       ...+++++|+++.+++|+.|+.|+||.+.........+       .+.++..|+.++|+|  +
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-------~~~h~a~iT~vaySp--d  498 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-------LLEHRAAITDVAYSP--D  498 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee-------eecccCCceEEEECC--C
Confidence                             14589999999999999999999999998765433322       133557899999998  6


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-ceecceEE
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIR  305 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~  305 (326)
                      +.+||++...+.+.+||..+.+.....+.+|...|.+++|+|+..++|+|+.|-.|.||++......-.++ +| ...|+
T Consensus       499 ~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH-~~gVn  577 (603)
T KOG0318|consen  499 GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH-LGGVN  577 (603)
T ss_pred             CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc-ccCce
Confidence            77999999999999999987655556677899999999999999999999999999999998754433344 56 77799


Q ss_pred             EEEECCCCCEEEEeccCccC
Q 020454          306 SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+.|- +...|++.|.|-.+
T Consensus       578 ~v~wl-de~tvvSsG~Da~i  596 (603)
T KOG0318|consen  578 SVAWL-DESTVVSSGQDANI  596 (603)
T ss_pred             eEEEe-cCceEEeccCccee
Confidence            99996 45578888888654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.4e-29  Score=186.57  Aligned_cols=266  Identities=14%  Similarity=0.135  Sum_probs=216.3

Q ss_pred             CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      |..-++++|+.++.++||+++..     ++...+....+...+..++|.+. ..++|++++.|.+|++||...++....+
T Consensus        30 ~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~wd~r~~k~~~~i  103 (313)
T KOG1407|consen   30 CDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIWDIRSGKCTARI  103 (313)
T ss_pred             ccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEEEeccCcEEEEe
Confidence            44578999999999999999976     45445555555555556666544 3457999999999999999999987777


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      ..       .. +.+. +.+.+        ++++++++..|..|.+.|.....        .+...+  ....+.-+.|+
T Consensus       104 ~~-------~~-eni~-i~wsp--------~g~~~~~~~kdD~it~id~r~~~--------~~~~~~--~~~e~ne~~w~  156 (313)
T KOG1407|consen  104 ET-------KG-ENIN-ITWSP--------DGEYIAVGNKDDRITFIDARTYK--------IVNEEQ--FKFEVNEISWN  156 (313)
T ss_pred             ec-------cC-cceE-EEEcC--------CCCEEEEecCcccEEEEEecccc--------eeehhc--ccceeeeeeec
Confidence            64       22 3344 55555        78899999999999999976543        111111  13457778888


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      .+++++......|.|.|.....-+++..++.|+.+++         ++.|.|  +|++||+|+.|-.+.+||+... -++
T Consensus       157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi---------cI~f~p--~GryfA~GsADAlvSLWD~~EL-iC~  224 (313)
T KOG1407|consen  157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI---------CIEFDP--DGRYFATGSADALVSLWDVDEL-ICE  224 (313)
T ss_pred             CCCCEEEEecCCceEEEEeccccccccccccCCcceE---------EEEECC--CCceEeeccccceeeccChhHh-hhh
Confidence            7777776666779999999999999999998886653         789988  7889999999999999999976 678


Q ss_pred             eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       252 ~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +.+.-++-+|+.+.|+.+|++||+|++|..|-|=++++|..+..++  +.++-..++|||...+||-++.|+.
T Consensus       225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCC
Confidence            8998899999999999999999999999999999999999999988  5999999999999999999988864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.8e-29  Score=215.13  Aligned_cols=269  Identities=15%  Similarity=0.195  Sum_probs=212.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec-cccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP-LNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~-~~~~~~~~~~~   93 (326)
                      ..+++++.++.+++|+......   .+....  ..+...+..++|..+.  .++++++.|++|+|||+ ..+..+..+. 
T Consensus       172 ~~l~~~~~~~~i~~~~~~~~~~---~~~~~l--~~h~~~v~~~~fs~d~--~~l~s~s~D~tiriwd~~~~~~~~~~l~-  243 (456)
T KOG0266|consen  172 RALAAASSDGLIRIWKLEGIKS---NLLREL--SGHTRGVSDVAFSPDG--SYLLSGSDDKTLRIWDLKDDGRNLKTLK-  243 (456)
T ss_pred             CeEEEccCCCcEEEeecccccc---hhhccc--cccccceeeeEECCCC--cEEEEecCCceEEEeeccCCCeEEEEec-
Confidence            4488999999999999965511   122222  3455566666665444  48999999999999999 4446666665 


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                             .|...|.++.+.+        .++.+++|+.|+.|++|++....        .++.+.. +.+.|.+++|+++
T Consensus       244 -------gH~~~v~~~~f~p--------~g~~i~Sgs~D~tvriWd~~~~~--------~~~~l~~-hs~~is~~~f~~d  299 (456)
T KOG0266|consen  244 -------GHSTYVTSVAFSP--------DGNLLVSGSDDGTVRIWDVRTGE--------CVRKLKG-HSDGISGLAFSPD  299 (456)
T ss_pred             -------CCCCceEEEEecC--------CCCEEEEecCCCcEEEEeccCCe--------EEEeeec-cCCceEEEEECCC
Confidence                   6778999999766        55799999999999999987633        5566664 4679999999999


Q ss_pred             CCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      +++|++++.|+.|++||+.++..  +..+..+...       ..++.+.|+|  ++.++++++.|+.+++||++.. ...
T Consensus       300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~fsp--~~~~ll~~~~d~~~~~w~l~~~-~~~  369 (456)
T KOG0266|consen  300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS-------APVTSVQFSP--NGKYLLSASLDRTLKLWDLRSG-KSV  369 (456)
T ss_pred             CCEEEEcCCCccEEEEECCCCceeeeecccCCCCC-------CceeEEEECC--CCcEEEEecCCCeEEEEEccCC-cce
Confidence            99999999999999999999883  4444433211       1588999998  5679999999999999999977 557


Q ss_pred             eEEeecCCc---eEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec--cCccC
Q 020454          252 MSFDFRETP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--FLEAA  325 (326)
Q Consensus       252 ~~~~~~~~~---i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s--~D~~~  325 (326)
                      ..+..|...   +.+...++.+.++++|+.|+.|++||+.++..+..+.+|-...+..+.++|..+++++++  .|+.+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~  448 (456)
T KOG0266|consen  370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLI  448 (456)
T ss_pred             eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceE
Confidence            777777663   444455778999999999999999999999999999986467889999999999999998  56543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=184.57  Aligned_cols=256  Identities=13%  Similarity=0.109  Sum_probs=204.6

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      -.+|++.|-+||+|+...+     .++.+|..+.+...-.+.+++.    ..+++|+.|..|.+||+++|+..+.+.   
T Consensus        31 Y~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dn----skf~s~GgDk~v~vwDV~TGkv~Rr~r---   98 (307)
T KOG0316|consen   31 YCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDN----SKFASCGGDKAVQVWDVNTGKVDRRFR---   98 (307)
T ss_pred             EEEEcCCCceEEeeccccc-----ceeeeecCCCceeeeccccccc----cccccCCCCceEEEEEcccCeeeeecc---
Confidence            4789999999999999988     7777887665554434444332    248999999999999999999988887   


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  175 (326)
                           .|.+.|..+.+..        ....+++++.|..+++||-+...      -.++.+++.. ...|.++.+.  +.
T Consensus        99 -----gH~aqVNtV~fNe--------esSVv~SgsfD~s~r~wDCRS~s------~ePiQildea-~D~V~Si~v~--~h  156 (307)
T KOG0316|consen   99 -----GHLAQVNTVRFNE--------ESSVVASGSFDSSVRLWDCRSRS------FEPIQILDEA-KDGVSSIDVA--EH  156 (307)
T ss_pred             -----cccceeeEEEecC--------cceEEEeccccceeEEEEcccCC------CCccchhhhh-cCceeEEEec--cc
Confidence                 6668888777543        45678999999999999976543      2356666532 4568888774  68


Q ss_pred             EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                      .|+.|+.||+++.||++.++......++           +|++++|++  +++..++++.|+++++.|-.++ +.+.+++
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~sDy~g~-----------pit~vs~s~--d~nc~La~~l~stlrLlDk~tG-klL~sYk  222 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSSDYFGH-----------PITSVSFSK--DGNCSLASSLDSTLRLLDKETG-KLLKSYK  222 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeehhhcCC-----------cceeEEecC--CCCEEEEeeccceeeecccchh-HHHHHhc
Confidence            8999999999999999998876665553           488999997  6778999999999999999988 6678888


Q ss_pred             ecCCceE--EEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce-EEEEEECCCCCEEEEec
Q 020454          256 FRETPIK--AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTLPIIASCG  320 (326)
Q Consensus       256 ~~~~~i~--~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~p~~~~l~s~s  320 (326)
                      +|...-.  ..+++.....+++|++||.|++||+.....+..++.+ ... |.+++++|...-++++.
T Consensus       223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-STVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-CceeEEeeecccCccceeEec
Confidence            8765332  3367777889999999999999999999999999976 666 89999999776655554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.6e-29  Score=206.62  Aligned_cols=264  Identities=14%  Similarity=0.120  Sum_probs=211.5

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      .+++.+..-.|.+|+...+     .+..-....  ...+..+  .+..++.+|++|..+|.|.|||..+.+.+..+..  
T Consensus       189 n~laValg~~vylW~~~s~-----~v~~l~~~~--~~~vtSv--~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--  257 (484)
T KOG0305|consen  189 NVLAVALGQSVYLWSASSG-----SVTELCSFG--EELVTSV--KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--  257 (484)
T ss_pred             CeEEEEecceEEEEecCCC-----ceEEeEecC--CCceEEE--EECCCCCEEEEeecCCeEEEEehhhccccccccC--
Confidence            3566666668999999877     222111111  3343444  4456677999999999999999987776666653  


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  175 (326)
                           .|...|-++++          ....+.+|+.++.|..+|++.......       . ...|...|..++|+++++
T Consensus       258 -----~h~~rvg~laW----------~~~~lssGsr~~~I~~~dvR~~~~~~~-------~-~~~H~qeVCgLkws~d~~  314 (484)
T KOG0305|consen  258 -----SHASRVGSLAW----------NSSVLSSGSRDGKILNHDVRISQHVVS-------T-LQGHRQEVCGLKWSPDGN  314 (484)
T ss_pred             -----CcCceeEEEec----------cCceEEEecCCCcEEEEEEecchhhhh-------h-hhcccceeeeeEECCCCC
Confidence                 36688998997          567899999999999999987654221       1 224578999999999999


Q ss_pred             EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEEEeCCCCCCceeE
Q 020454          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~  253 (326)
                      ++|+|+.|+.+.|||....++++.+..|.         ..|.+++|+|-..+ +||+|+  .|+.|++||..++ ..+..
T Consensus       315 ~lASGgnDN~~~Iwd~~~~~p~~~~~~H~---------aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g-~~i~~  383 (484)
T KOG0305|consen  315 QLASGGNDNVVFIWDGLSPEPKFTFTEHT---------AAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTG-ARIDS  383 (484)
T ss_pred             eeccCCCccceEeccCCCccccEEEeccc---------eeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCC-cEecc
Confidence            99999999999999998888888877765         66889999997555 899874  6999999999987 55666


Q ss_pred             EeecCCceEEEEecCCCCeEE--EEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          254 FDFRETPIKAVAEEPDSFNIY--IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~--~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      +... +.|+++.|++..+-|+  .|..++.|.||+..+.+++..+.+| ..+|..++++|++..|++|+.|++++
T Consensus       384 vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  384 VDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSPDGETIVTGAADETLR  456 (484)
T ss_pred             cccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECCCCCEEEEecccCcEE
Confidence            6544 7899999999987676  4556789999999999999999998 99999999999999999999999763

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=4.9e-30  Score=206.74  Aligned_cols=267  Identities=16%  Similarity=0.177  Sum_probs=202.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.||.|+||++...    .+.+.+|..+..++  -.++|.  +.+..+++++-|+.|++||+++|+.+..+.. 
T Consensus       228 hLlLS~gmD~~vklW~vy~~----~~~lrtf~gH~k~V--rd~~~s--~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-  298 (503)
T KOG0282|consen  228 HLLLSGGMDGLVKLWNVYDD----RRCLRTFKGHRKPV--RDASFN--NCGTSFLSASFDRFLKLWDTETGQVLSRFHL-  298 (503)
T ss_pred             eEEEecCCCceEEEEEEecC----cceehhhhcchhhh--hhhhcc--ccCCeeeeeecceeeeeeccccceEEEEEec-
Confidence            45899999999999998763    14555666544443  344443  3444699999999999999999999888876 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                               +.+.....+++.      +.+.+++|..|+.|+.||++..+.        +..++ ++-+.|..+.|-+++
T Consensus       299 ---------~~~~~cvkf~pd------~~n~fl~G~sd~ki~~wDiRs~kv--------vqeYd-~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  299 ---------DKVPTCVKFHPD------NQNIFLVGGSDKKIRQWDIRSGKV--------VQEYD-RHLGAILDITFVDEG  354 (503)
T ss_pred             ---------CCCceeeecCCC------CCcEEEEecCCCcEEEEeccchHH--------HHHHH-hhhhheeeeEEccCC
Confidence                     333333334422      237899999999999999887652        22222 235688999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--cee
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVM  252 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~  252 (326)
                      +.+++.+.|+.++||+.+.+.++.....+..        ....++..+|  .+.+++.-+.|+.|.+|.+....+  .-.
T Consensus       355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~--------hsmP~~~~~P--~~~~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  355 RRFISSSDDKSVRIWENRIPVPIKNIADPEM--------HTMPCLTLHP--NGKWFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             ceEeeeccCccEEEEEcCCCccchhhcchhh--------ccCcceecCC--CCCeehhhccCceEEEEecccccccCHhh
Confidence            9999999999999999987766544322211        1234667787  455999999999999999663211  123


Q ss_pred             EEeecC--CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEeccCccC
Q 020454          253 SFDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAA  325 (326)
Q Consensus       253 ~~~~~~--~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~  325 (326)
                      .|++|.  +.-..+.|||||++|++|+.||.+.+||.++-+++..+++| .+++..+.|+|.. ..+||||.||.+
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~I  499 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLI  499 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCcee
Confidence            455553  34456799999999999999999999999999999999998 9999999999954 589999999975

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=212.20  Aligned_cols=231  Identities=18%  Similarity=0.205  Sum_probs=190.7

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      .-+..+.++++++.|+.+++|+....+  ....+        ..|...|.++.+.+        ++..+++++.|+++++
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--------~~h~~~v~~~~fs~--------d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL--------SGHTRGVSDVAFSP--------DGSYLLSGSDDKTLRI  229 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccc--------cccccceeeeEECC--------CCcEEEEecCCceEEE
Confidence            345566689999999999999996665  33332        16678899999876        6679999999999999


Q ss_pred             EEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                      ||+....       ..++... .|...|++++|+|+++++++|+.|++|+|||+++++++..++.|.         ..|+
T Consensus       230 wd~~~~~-------~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs---------~~is  292 (456)
T KOG0266|consen  230 WDLKDDG-------RNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS---------DGIS  292 (456)
T ss_pred             eeccCCC-------eEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC---------CceE
Confidence            9983321       2556666 678899999999999999999999999999999999999988876         5688


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEeecCC--ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~  294 (326)
                      +++|.+  ++++|++++.|+.|++||+.++.. ++..+..++.  ++++++|+|++.++++++.|+.+++||++.++.+.
T Consensus       293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~  370 (456)
T KOG0266|consen  293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG  370 (456)
T ss_pred             EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence            999988  667999999999999999998732 3455555544  49999999999999999999999999999999999


Q ss_pred             EEcceecc--eEEEEEECCCCCEEEEeccCccC
Q 020454          295 CFIGKCSG--SIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       295 ~~~~~~~~--~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+.+|..+  .+.+...++.++++++++.|+.+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV  403 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence            99998333  34444557899999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=200.97  Aligned_cols=223  Identities=13%  Similarity=0.192  Sum_probs=183.5

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ...+.++.+++.    .+++|..|++|+|||..+...+..+.        +|.+.|.++.+          +...+++|+
T Consensus       197 skgVYClQYDD~----kiVSGlrDnTikiWD~n~~~c~~~L~--------GHtGSVLCLqy----------d~rviisGS  254 (499)
T KOG0281|consen  197 SKGVYCLQYDDE----KIVSGLRDNTIKIWDKNSLECLKILT--------GHTGSVLCLQY----------DERVIVSGS  254 (499)
T ss_pred             CCceEEEEecch----hhhcccccCceEEeccccHHHHHhhh--------cCCCcEEeeec----------cceEEEecC
Confidence            445555555433    58999999999999997766655544        78899999997          557899999


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee---eeecCCCCCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNS  207 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~~~~~~~  207 (326)
                      .|.+|++||++..+        +++.+ ..+.+.|..+.|+  ..++++++.|.+|.+||+.....+   ..+.+|.   
T Consensus       255 SDsTvrvWDv~tge--------~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr---  320 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGE--------PLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---  320 (499)
T ss_pred             CCceEEEEeccCCc--------hhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh---
Confidence            99999999988755        22222 2456788889996  589999999999999999865422   2233433   


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                            ..|+.+.|.    .+++++++.|.+|++|++.+. ..+.++.+|...|-|+.+  .++++++|+.|.+|++||+
T Consensus       321 ------AaVNvVdfd----~kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  321 ------AAVNVVDFD----DKYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             ------hheeeeccc----cceEEEecCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEec
Confidence                  567888885    349999999999999999988 679999999999999887  6899999999999999999


Q ss_pred             CCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..|.++..++|| +.-|+++.|  +.+.|++|+.||.+
T Consensus       388 ~~G~cLRvLeGH-EeLvRciRF--d~krIVSGaYDGki  422 (499)
T KOG0281|consen  388 ECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKI  422 (499)
T ss_pred             cccHHHHHHhch-HHhhhheee--cCceeeeccccceE
Confidence            999999999998 999999999  56789999999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1e-27  Score=221.98  Aligned_cols=261  Identities=17%  Similarity=0.163  Sum_probs=195.7

Q ss_pred             cccEEEEEecCCcCCCcceeeec--cC-CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce----ee-eeccc
Q 020454           23 LGLIKVIEARGEHGGVPKVVERW--GD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RV-AISNA   94 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~----~~-~~~~~   94 (326)
                      +|..++|+...-     ++....  ++ ..+...+.+++|.  +++++|++|+.|+.|+||+......    .. .....
T Consensus       457 ~gl~~~~~~~~~-----~~~~~~~~~~~~~~~~~V~~i~fs--~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~  529 (793)
T PLN00181        457 EGLCKYLSFSKL-----RVKADLKQGDLLNSSNLVCAIGFD--RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL  529 (793)
T ss_pred             hhhhhhhcccce-----EEEEeeccccccCCCCcEEEEEEC--CCCCEEEEEeCCCEEEEEECCcccccccccccceEEe
Confidence            678888887754     221111  11 1234455566665  4566999999999999999753210    00 00000


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  173 (326)
                            .+...+.++.+.+.       ....+++++.||.|++||+....        .+..+. .+...|.+++|+| +
T Consensus       530 ------~~~~~v~~l~~~~~-------~~~~las~~~Dg~v~lWd~~~~~--------~~~~~~-~H~~~V~~l~~~p~~  587 (793)
T PLN00181        530 ------ASRSKLSGICWNSY-------IKSQVASSNFEGVVQVWDVARSQ--------LVTEMK-EHEKRVWSIDYSSAD  587 (793)
T ss_pred             ------cccCceeeEEeccC-------CCCEEEEEeCCCeEEEEECCCCe--------EEEEec-CCCCCEEEEEEcCCC
Confidence                  12245666765431       24689999999999999976432        333333 4567899999997 6


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +.+|++|+.|+.|++||++++..+..+..+          ..+.++.|.+. ++.+|++|+.||.|++||++....++..
T Consensus       588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~----------~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~  656 (793)
T PLN00181        588 PTLLASGSDDGSVKLWSINQGVSIGTIKTK----------ANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCT  656 (793)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecC----------CCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence            799999999999999999988777665432          23778888764 5779999999999999999976556778


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC------CeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~------~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..|...|.++.|. ++.+|++++.|+.|++||++.      .+++..+.+| ...+..++|+|++++|++|+.|+.+
T Consensus       657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v  732 (793)
T PLN00181        657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEV  732 (793)
T ss_pred             ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEE
Confidence            88899999999997 788999999999999999974      3577889998 9999999999999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.9e-29  Score=184.29  Aligned_cols=264  Identities=12%  Similarity=0.162  Sum_probs=199.2

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP  101 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  101 (326)
                      .+|.+.|.++... .++. .+..+   .-..++..++|....+ +.+++++.||+++|||+....  ..+..+     +.
T Consensus        36 G~G~L~ile~~~~-~gi~-e~~s~---d~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s--~Pi~~~-----kE  102 (311)
T KOG0277|consen   36 GNGRLFILEVTDP-KGIQ-ECQSY---DTEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPS--KPIHKF-----KE  102 (311)
T ss_pred             cCceEEEEecCCC-CCeE-EEEee---ecccceeEeeecCCCc-ceEEEEecCceEEEeccCCCC--cchhHH-----Hh
Confidence            3577888888643 3333 22233   3445667777765544 368999999999999964222  233332     25


Q ss_pred             CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-CCEEEEe
Q 020454          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFG  180 (326)
Q Consensus       102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg  180 (326)
                      |...|.++.+-..       ....+++++-|++|++|+.+..+        .++.++ .+...|+...|+|. .++++++
T Consensus       103 H~~EV~Svdwn~~-------~r~~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen  103 HKREVYSVDWNTV-------RRRIFLTSSWDGTIKLWDPNRPN--------SVQTFN-GHNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             hhhheEEeccccc-------cceeEEeeccCCceEeecCCCCc--------ceEeec-CCccEEEEEecCCCCCCeEEEc
Confidence            6678888876442       23567888999999999977655        455555 35678999999996 5999999


Q ss_pred             cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (326)
Q Consensus       181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  260 (326)
                      +.|+++++||++..-....+..|.         ..+.++.|+.. +.+.+++|+.|+.|+.||+|+.+.|+..+.+|...
T Consensus       167 Sgd~~l~lwdvr~~gk~~~i~ah~---------~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFMSIEAHN---------SEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             cCCceEEEEEecCCCceeEEEecc---------ceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            999999999998643333344443         23667788765 45699999999999999999998999999999999


Q ss_pred             eEEEEecCC-CCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECC-CCCEEEEeccCccC
Q 020454          261 IKAVAEEPD-SFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHP-TLPIIASCGFLEAA  325 (326)
Q Consensus       261 i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~~  325 (326)
                      |+.+.|||. ...|++++.|=+++|||...+ ..+.++.-| ..-|..++|++ +..++|++|.|+.+
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccccCceeeecccccce
Confidence            999999997 467789999999999999854 445556655 99999999997 66799999999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=194.34  Aligned_cols=254  Identities=33%  Similarity=0.546  Sum_probs=208.9

Q ss_pred             EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g  133 (326)
                      +..++|....+...|...+.|..+..+.++...+.......  ..+..+.++|.+++.          .++.|++|..+|
T Consensus        58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~--~~~~l~~~~I~gl~~----------~dg~Litc~~sG  125 (412)
T KOG3881|consen   58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA--KTVSLGTKSIKGLKL----------ADGTLITCVSSG  125 (412)
T ss_pred             hhhheeecCCceeEeeccccCcccccccccCCccccccccc--cccccccccccchhh----------cCCEEEEEecCC
Confidence            33455555555555555558888888888777665554111  011255688998887          568999999999


Q ss_pred             cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCC--CeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      .+.+|.......-    ...+..|..  ...+..|.-++.. .++|+||..  +.+.|||++..++++..++.+.+.+++
T Consensus       126 ~l~~~~~k~~d~h----ss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L  199 (412)
T KOG3881|consen  126 NLQVRHDKSGDLH----SSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL  199 (412)
T ss_pred             cEEEEeccCCccc----cccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence            9999997754311    223333332  4677888888765 666779999  889999999999999999999999999


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      +.|.|++++.|.+....+.|++++.-+.|++||++.+++|+.+|...+.+++++...|++++|++|..-|.+..||++++
T Consensus       200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence            99999999999987667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEE-EcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          291 KLLGC-FIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       291 ~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      +.+.. +.+. .+.|++|..+|..++||+||.|++++
T Consensus       280 kl~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvR  315 (412)
T KOG3881|consen  280 KLLGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVR  315 (412)
T ss_pred             eeeccccCCc-cCCcceEEEcCCCceEEeeccceeEE
Confidence            99877 7775 99999999999999999999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-28  Score=180.79  Aligned_cols=229  Identities=18%  Similarity=0.206  Sum_probs=185.2

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      .+.++.+.  ..++|.++++.|.+|++|+...+.+++++.        .|...|..++...        ++..+.+|+.|
T Consensus        19 aV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~liktYs--------ghG~EVlD~~~s~--------Dnskf~s~GgD   80 (307)
T KOG0316|consen   19 AVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKTYS--------GHGHEVLDAALSS--------DNSKFASCGGD   80 (307)
T ss_pred             ceEEEEEc--cCCCEEEEcCCCceEEeecccccceeeeec--------CCCceeeeccccc--------cccccccCCCC
Confidence            33344443  456699999999999999999999999888        5557787777544        66789999999


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCc
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGI  210 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~  210 (326)
                      ..+.+||++...        .++.|. .|..+|+.++|+.+...+++|+.|..+++||.++.  +++..+....      
T Consensus        81 k~v~vwDV~TGk--------v~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~------  145 (307)
T KOG0316|consen   81 KAVQVWDVNTGK--------VDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK------  145 (307)
T ss_pred             ceEEEEEcccCe--------eeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc------
Confidence            999999988654        677787 45789999999999999999999999999999864  3444433322      


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                         ..|.++...    ...+++|+.||++|.||+|.+ +  .....-..+|++++|+++++..++++.|+++++.|-.+|
T Consensus       146 ---D~V~Si~v~----~heIvaGS~DGtvRtydiR~G-~--l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  146 ---DGVSSIDVA----EHEIVAGSVDGTVRTYDIRKG-T--LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             ---CceeEEEec----ccEEEeeccCCcEEEEEeecc-e--eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence               457777765    238999999999999999987 3  233345579999999999999999999999999999999


Q ss_pred             eEEEEEcceecceEEEE--EECCCCCEEEEeccCccC
Q 020454          291 KLLGCFIGKCSGSIRSI--ARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       291 ~~~~~~~~~~~~~v~~l--~~~p~~~~l~s~s~D~~~  325 (326)
                      ++++.++|| ...=..+  +++.....+++||.||.+
T Consensus       216 klL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG~V  251 (307)
T KOG0316|consen  216 KLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDGKV  251 (307)
T ss_pred             HHHHHhccc-ccceeeeeeeecccceeEEeccCCceE
Confidence            999999998 6554444  566777899999999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.4e-29  Score=197.36  Aligned_cols=230  Identities=13%  Similarity=0.129  Sum_probs=188.4

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-  145 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-  145 (326)
                      .+++|+.||.|+|||+.+.+....+.        .|.+.|.++..          +.+.+++++.|.+|+.|.++.... 
T Consensus        81 ~~aSGs~DG~VkiWnlsqR~~~~~f~--------AH~G~V~Gi~v----------~~~~~~tvgdDKtvK~wk~~~~p~~  142 (433)
T KOG0268|consen   81 TVASGSCDGEVKIWNLSQRECIRTFK--------AHEGLVRGICV----------TQTSFFTVGDDKTVKQWKIDGPPLH  142 (433)
T ss_pred             hhhccccCceEEEEehhhhhhhheee--------cccCceeeEEe----------cccceEEecCCcceeeeeccCCcce
Confidence            58999999999999998888777776        67799999997          447899999999999998654221 


Q ss_pred             ------------------ccccccceEEEEEccCCCc----------eEEEEEcCCC-CEEEEecCCCeEEEEECCCcee
Q 020454          146 ------------------SAESSCSTVKSWNVCASGT----------IAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK  196 (326)
Q Consensus       146 ------------------~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~  196 (326)
                                        .-......+.+|+.....+          |.++.|+|.. .+|++++.|+.|.+||++...+
T Consensus       143 tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P  222 (433)
T KOG0268|consen  143 TILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP  222 (433)
T ss_pred             eeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence                              1122344678898765544          6678888865 6788888999999999999988


Q ss_pred             eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g  276 (326)
                      +.++....          .-+.++|+|  +...|++++.|..++.||+|....|+..+..|.+.|.+|.|||.|+-+++|
T Consensus       223 l~KVi~~m----------RTN~IswnP--eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  223 LKKVILTM----------RTNTICWNP--EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             cceeeeec----------cccceecCc--cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence            77643221          234779999  455899999999999999998888999999999999999999999999999


Q ss_pred             cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      +.|.+|+||..+.+.....+.......|.++.|+.|.++|+|||.|+.++
T Consensus       291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR  340 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR  340 (433)
T ss_pred             cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence            99999999999987654444322366899999999999999999999764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=192.85  Aligned_cols=265  Identities=13%  Similarity=0.143  Sum_probs=199.4

Q ss_pred             CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      .|.--.+|++.  .+.+++..+.  +..+.+.+|.     ..+.+.+|  ..++.+|++|...|.|+|||..+...+..+
T Consensus        38 ~P~d~aVt~S~--rvqly~~~~~--~~~k~~srFk-----~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~~  106 (487)
T KOG0310|consen   38 HPYDFAVTSSV--RVQLYSSVTR--SVRKTFSRFK-----DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQL  106 (487)
T ss_pred             CCCceEEeccc--EEEEEecchh--hhhhhHHhhc-----cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence            34444555544  5677887654  3333333333     33444444  456779999999999999997655555555


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      .        .|+.++.... |..+      ++..+++|+.|+.+++||++...         +...-..+..-|.|.+++
T Consensus       107 ~--------ah~apv~~~~-f~~~------d~t~l~s~sDd~v~k~~d~s~a~---------v~~~l~~htDYVR~g~~~  162 (487)
T KOG0310|consen  107 Y--------AHQAPVHVTK-FSPQ------DNTMLVSGSDDKVVKYWDLSTAY---------VQAELSGHTDYVRCGDIS  162 (487)
T ss_pred             h--------hccCceeEEE-eccc------CCeEEEecCCCceEEEEEcCCcE---------EEEEecCCcceeEeeccc
Confidence            5        5667777555 4433      45678888888999999976532         322333567789999999


Q ss_pred             CCC-CEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          172 ISE-KFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       172 ~~~-~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      |.. .+++|||.||.|++||++.. ..+..+          .|..+|..+.|.|  .|.++++++ ...|++||+.++.+
T Consensus       163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------nhg~pVe~vl~lp--sgs~iasAg-Gn~vkVWDl~~G~q  229 (487)
T KOG0310|consen  163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------NHGCPVESVLALP--SGSLIASAG-GNSVKVWDLTTGGQ  229 (487)
T ss_pred             cCCCeEEEecCCCceEEEEEeccCCceeEEe----------cCCCceeeEEEcC--CCCEEEEcC-CCeEEEEEecCCce
Confidence            965 68999999999999999876 334332          2335688999998  455888877 46899999997767


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      .+..+..|...|+|+++..++..|++|+-|+.|++||+.+.+.++.+.  ..++|.+++.+|+++.++.|..||.++
T Consensus       230 ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  230 LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceee
Confidence            666666688999999999999999999999999999999999999988  488999999999999999999999764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-28  Score=181.93  Aligned_cols=227  Identities=20%  Similarity=0.248  Sum_probs=188.7

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      ..++.+|++++.|.+..+|-..+|+.+.++.        +|.+.|.++....        ....+++++.|.++++||++
T Consensus        19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~--------GHtGavW~~Did~--------~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen   19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------GHTGAVWCCDIDW--------DSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cCCCcEEEEecCCCCceEEEecCCceeeeec--------CCCceEEEEEecC--------CcceeeeccccceeEEEEcC
Confidence            3456799999999999999888999988887        7889999888654        66799999999999999987


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-----CCeEEEEECCC-------ceeeeeecCCCCCCCC
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDK-------CEKIWTAKPPPKNSLG  209 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----d~~i~iwd~~~-------~~~~~~~~~~~~~~~~  209 (326)
                      ...        .+..|+.  +.+|..+.|++++++++....     .+.|.++|++.       .++..++..+.     
T Consensus        83 tGk--------~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-----  147 (327)
T KOG0643|consen   83 TGK--------QLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-----  147 (327)
T ss_pred             CCc--------EEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-----
Confidence            654        5666665  678999999999998877544     35699999984       33344433322     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                          ..++.+-|.|.  ++.|++|..||.|.+||++++.+.+.+.+.|...|+.++++++..++++|+.|.+-++||+++
T Consensus       148 ----skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  148 ----SKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             ----cceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence                45788899984  459999999999999999998777778888999999999999999999999999999999876


Q ss_pred             C-------------------------------------------------------eEEEEEcceecceEEEEEECCCCC
Q 020454          290 G-------------------------------------------------------KLLGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       290 ~-------------------------------------------------------~~~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                      .                                                       +.+.++++| -++|++++|||+|+
T Consensus       222 l~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPINsvAfhPdGk  300 (327)
T KOG0643|consen  222 LEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPINSVAFHPDGK  300 (327)
T ss_pred             eeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCcceeEECCCCc
Confidence            2                                                       234456677 89999999999999


Q ss_pred             EEEEeccCccCC
Q 020454          315 IIASCGFLEAAS  326 (326)
Q Consensus       315 ~l~s~s~D~~~~  326 (326)
                      ..+|||.||.++
T Consensus       301 sYsSGGEDG~VR  312 (327)
T KOG0643|consen  301 SYSSGGEDGYVR  312 (327)
T ss_pred             ccccCCCCceEE
Confidence            999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=9.5e-28  Score=195.21  Aligned_cols=290  Identities=14%  Similarity=0.106  Sum_probs=206.9

Q ss_pred             cccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc
Q 020454            5 TTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (326)
Q Consensus         5 ~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~   84 (326)
                      ++++++|   .|+++|+.|-.|+.||..+-+......  +.-++.+.-.+-.+.+  +..+..|++.+..-..+|+|...
T Consensus       173 l~~Dp~G---aR~~sGs~Dy~v~~wDf~gMdas~~~f--r~l~P~E~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG  245 (641)
T KOG0772|consen  173 LAVDPSG---ARFVSGSLDYTVKFWDFQGMDASMRSF--RQLQPCETHQINSLQY--SVTGDQILVVSGSAQAKLLDRDG  245 (641)
T ss_pred             eeecCCC---ceeeeccccceEEEEecccccccchhh--hccCcccccccceeee--cCCCCeEEEEecCcceeEEccCC
Confidence            4667777   999999999999999988663333221  1112322222223333  34556788888889999999854


Q ss_pred             cceeeeecc---c-CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc
Q 020454           85 GDLRVAISN---A-GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (326)
Q Consensus        85 ~~~~~~~~~---~-~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~  160 (326)
                      -+.....+-   + ....-.+|...+.+-.|.+.       ..+.+++++.||++++|+++....       ...++...
T Consensus       246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-------~k~~FlT~s~DgtlRiWdv~~~k~-------q~qVik~k  311 (641)
T KOG0772|consen  246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-------NKEEFLTCSYDGTLRIWDVNNTKS-------QLQVIKTK  311 (641)
T ss_pred             ceeeeeeccchhhhhhhccCCceeeeeccccccC-------cccceEEecCCCcEEEEecCCchh-------heeEEeec
Confidence            333222211   0 00001244455565554432       456899999999999999886442       33333332


Q ss_pred             C----CCceEEEEEcCCCCEEEEecCCCeEEEEECCCc--eeeeeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEE
Q 020454          161 A----SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (326)
Q Consensus       161 ~----~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~  233 (326)
                      .    .-++..++|++++++||+|..||.|.+|+..+.  ++.+.++ .|...       ..|++++|++  +|++|++-
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g-------~~Itsi~FS~--dg~~LlSR  382 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG-------QDITSISFSY--DGNYLLSR  382 (641)
T ss_pred             cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC-------CceeEEEecc--ccchhhhc
Confidence            2    235889999999999999999999999998543  2333322 22211       3689999998  78899999


Q ss_pred             eCCCeEEEEeCCCCCCceeEEee--cCCceEEEEecCCCCeEEEEcC------CCcEEEEECCCCeEEEEEcceecceEE
Q 020454          234 TNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSIR  305 (326)
Q Consensus       234 ~~dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~v~  305 (326)
                      +.|+++++||+|..++|+..+.+  ...+-+.++|||+.++|++|+.      .|.+.+||..+...++++.-. ...|.
T Consensus       383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv  461 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVV  461 (641)
T ss_pred             cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEE
Confidence            99999999999998888877764  3346678899999999998864      468999999999999988765 77899


Q ss_pred             EEEECCCCCEEEEeccCccC
Q 020454          306 SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+.|||.-+.|+.++.||.+
T Consensus       462 ~~~WhpkLNQi~~gsgdG~~  481 (641)
T KOG0772|consen  462 RCLWHPKLNQIFAGSGDGTA  481 (641)
T ss_pred             EEeecchhhheeeecCCCce
Confidence            99999998889999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-27  Score=205.56  Aligned_cols=273  Identities=14%  Similarity=0.130  Sum_probs=214.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.++++=..|.|++||.+-+     .++.+|.+++.++.  ++.|  .+..+++++|+.|-.|++|+..+.+++.++.  
T Consensus        22 PwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVR--gv~F--H~~qplFVSGGDDykIkVWnYk~rrclftL~--   90 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVR--GVDF--HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL--   90 (1202)
T ss_pred             CEEEEeecCceeeeehhhhh-----hHHhhhhccCCccc--eeee--cCCCCeEEecCCccEEEEEecccceehhhhc--
Confidence            56899999999999999988     78888888777766  4444  4556699999999999999998888766655  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            +|-+.|..+.+.+        .-.-|++++.|.+|+||++...+        .+.+.. .|.--|.|..|||..
T Consensus        91 ------GHlDYVRt~~FHh--------eyPWIlSASDDQTIrIWNwqsr~--------~iavlt-GHnHYVMcAqFhptE  147 (1202)
T KOG0292|consen   91 ------GHLDYVRTVFFHH--------EYPWILSASDDQTIRIWNWQSRK--------CIAVLT-GHNHYVMCAQFHPTE  147 (1202)
T ss_pred             ------cccceeEEeeccC--------CCceEEEccCCCeEEEEeccCCc--------eEEEEe-cCceEEEeeccCCcc
Confidence                  6678888777655        34689999999999999987655        344443 445679999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecC--------CCC---------CCC---CcCCCCceeeeEEeecCCCcEEEEEe
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKP--------PPK---------NSL---GIFTPTWFTSAAFLSIDDHRKFVAGT  234 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~--------~~~---------~~~---~~~~~~~v~~~~~~p~~~~~~l~~~~  234 (326)
                      .++++++.|.+|++||+..-+......+        .+.         ...   --.|...|+-++|+|.-.  ++++|+
T Consensus       148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~  225 (1202)
T KOG0292|consen  148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGA  225 (1202)
T ss_pred             ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEecC
Confidence            9999999999999999975322111111        100         000   012456788899999643  999999


Q ss_pred             CCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          235 NDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       235 ~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      .|..|++|.+...+ -.+-+..+|...|+++-|+|..+.|++.++|++|+|||+...+.+++|+.. .++-+.++-+|..
T Consensus       226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-ndRFW~laahP~l  304 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-NDRFWILAAHPEL  304 (1202)
T ss_pred             CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-CCeEEEEEecCCc
Confidence            99999999987542 124456689999999999999999999999999999999999999999865 8899999999999


Q ss_pred             CEEEEeccCcc
Q 020454          314 PIIASCGFLEA  324 (326)
Q Consensus       314 ~~l~s~s~D~~  324 (326)
                      +++|+|-..|+
T Consensus       305 NLfAAgHDsGm  315 (1202)
T KOG0292|consen  305 NLFAAGHDSGM  315 (1202)
T ss_pred             ceeeeecCCce
Confidence            88776654443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.8e-28  Score=191.41  Aligned_cols=267  Identities=12%  Similarity=0.069  Sum_probs=205.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++++.|-+.-+|++...  ...++..+.-.+..  .+..+.  |++++++|++++.+..+.+||..+|+....+.. 
T Consensus       237 kyLAsaSkD~Taiiw~v~~d--~~~kl~~tlvgh~~--~V~yi~--wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-  309 (519)
T KOG0293|consen  237 KYLASASKDSTAIIWIVVYD--VHFKLKKTLVGHSQ--PVSYIM--WSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-  309 (519)
T ss_pred             eeEeeccCCceEEEEEEecC--cceeeeeeeecccC--ceEEEE--ECCCCCeEEecCchHheeeccCCcchhhhhccc-
Confidence            34777888888889998765  22445444443333  333333  456677999999999999999999998777664 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .....+.+.++++        ++..+++|+.|+.+..|+++.+.         +..|+--....|.++++.+||
T Consensus       310 ------~~~~S~~sc~W~p--------Dg~~~V~Gs~dr~i~~wdlDgn~---------~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  310 ------GLGFSVSSCAWCP--------DGFRFVTGSPDRTIIMWDLDGNI---------LGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             ------CcCCCcceeEEcc--------CCceeEecCCCCcEEEecCCcch---------hhcccccccceeEEEEEcCCC
Confidence                  3345677788877        67789999999999999987543         445654445679999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      +++++.+.|..|++|+.++.........          ...|++.+.+  ++++++++.-.+..+++||+... ..+..+
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lise----------~~~its~~iS--~d~k~~LvnL~~qei~LWDl~e~-~lv~kY  433 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLISE----------EQPITSFSIS--KDGKLALVNLQDQEIHLWDLEEN-KLVRKY  433 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhccccc----------cCceeEEEEc--CCCcEEEEEcccCeeEEeecchh-hHHHHh
Confidence            9999999999999999876544322221          1347777776  47778888889999999999955 556777


Q ss_pred             eecCC---ceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEeccCccCC
Q 020454          255 DFRET---PIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAAS  326 (326)
Q Consensus       255 ~~~~~---~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~~  326 (326)
                      .+|..   -|.+ ||-- +..++++|++|+.|+||+..+++++..+.|| ...|++++|+|.. ..+||+|.||+++
T Consensus       434 ~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIR  508 (519)
T KOG0293|consen  434 FGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIR  508 (519)
T ss_pred             hcccccceEEEe-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCC-cceeeEEecCCCCHHHhhccCCCCeEE
Confidence            77654   3444 6654 4579999999999999999999999999999 9999999999955 5799999999874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-28  Score=203.06  Aligned_cols=244  Identities=14%  Similarity=0.215  Sum_probs=191.0

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~  140 (326)
                      +.+.+++|++|+.||.|++|+.....-...-...  ...+.|...+..+....        .++.+++++.|-+|++|+.
T Consensus        33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~--asme~HsDWVNDiiL~~--------~~~tlIS~SsDtTVK~W~~  102 (735)
T KOG0308|consen   33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYI--ASMEHHSDWVNDIILCG--------NGKTLISASSDTTVKVWNA  102 (735)
T ss_pred             cCCCCceEEecCCCceEEEeccccccCCcccchh--hhhhhhHhHHhhHHhhc--------CCCceEEecCCceEEEeec
Confidence            4556668999999999999998633221000000  00135667777777655        5679999999999999997


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEE-cCCCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCcCCCCcee
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                      ......   ...+++    .|..-|.|+++ .++..++|+||.|+.|.+||++++  +.+....+.+...+.......|+
T Consensus       103 ~~~~~~---c~stir----~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY  175 (735)
T KOG0308|consen  103 HKDNTF---CMSTIR----THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY  175 (735)
T ss_pred             ccCcch---hHhhhh----cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence            754311   111221    24668999999 777899999999999999999987  34444444444433333446789


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      +++..+  .+..|++|+..+.+++||+++. ..+..+.+|...|..+..++||+.+++++.||+|++||+...+++.++.
T Consensus       176 SLA~N~--t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  176 SLAMNQ--TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             eeecCC--cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            998887  4568999999999999999988 4477888999999999999999999999999999999999999999999


Q ss_pred             ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          298 GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .| ...|+++..+|+-..+.+|+.||.+
T Consensus       253 vH-~e~VWaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  253 VH-KEGVWALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             ec-cCceEEEeeCCCcceEEecCCCCcE
Confidence            98 8889999999999999999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.8e-26  Score=187.96  Aligned_cols=234  Identities=17%  Similarity=0.251  Sum_probs=188.7

Q ss_pred             ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      ..+.++++.+  .+++|++++.||.|++|++.+++....+.        .+...+..+.+.+        .+..+++++.
T Consensus        10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~--------~~~~l~~~~~   71 (289)
T cd00200          10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAASA--------DGTYLASGSS   71 (289)
T ss_pred             CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEEEe--------cCCcceeEEEECC--------CCCEEEEEcC
Confidence            4455555543  35689999999999999998776544443        3445666677655        4568999999


Q ss_pred             CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      +|.+++|++....        .+..+. .+...+.++.++++++++++++.|+.|.+||+++++....+..+.       
T Consensus        72 ~~~i~i~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------  135 (289)
T cd00200          72 DKTIRLWDLETGE--------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT-------  135 (289)
T ss_pred             CCeEEEEEcCccc--------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC-------
Confidence            9999999987532        333333 335589999999999999998889999999999888777665432       


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                        ..++++.|+|.  +.++++++.++.|++||++.. +++..+..+...+.+++|+|+++.+++++.+|.|++||+++++
T Consensus       136 --~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         136 --DWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             --CcEEEEEEcCc--CCEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence              46889999984  557788777999999999976 5677888888899999999999999999999999999999999


Q ss_pred             EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+..+..| ...+.++.|+|++.++++++.||.+
T Consensus       211 ~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i  243 (289)
T cd00200         211 CLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTI  243 (289)
T ss_pred             eecchhhc-CCceEEEEEcCCCcEEEEEcCCCcE
Confidence            99888777 8899999999999899988878764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.7e-26  Score=175.01  Aligned_cols=262  Identities=14%  Similarity=0.151  Sum_probs=198.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec--CCcEEEEeccccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~~   92 (326)
                      ..++++++|..+++||...+     +.......+....  -.++|.....  .++.++.  |.+||..++.++++++.+.
T Consensus        27 ~~litss~dDsl~LYd~~~g-----~~~~ti~skkyG~--~~~~Fth~~~--~~i~sStk~d~tIryLsl~dNkylRYF~   97 (311)
T KOG1446|consen   27 LLLITSSEDDSLRLYDSLSG-----KQVKTINSKKYGV--DLACFTHHSN--TVIHSSTKEDDTIRYLSLHDNKYLRYFP   97 (311)
T ss_pred             CEEEEecCCCeEEEEEcCCC-----ceeeEeecccccc--cEEEEecCCc--eEEEccCCCCCceEEEEeecCceEEEcC
Confidence            67899999999999999987     4443443333322  2445554444  3555555  8999999999999988877


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                              +|...|..|...+        .++.+++++.|++|++||++..+.        ..+...   ..-...+++|
T Consensus        98 --------GH~~~V~sL~~sP--------~~d~FlS~S~D~tvrLWDlR~~~c--------qg~l~~---~~~pi~AfDp  150 (311)
T KOG1446|consen   98 --------GHKKRVNSLSVSP--------KDDTFLSSSLDKTVRLWDLRVKKC--------QGLLNL---SGRPIAAFDP  150 (311)
T ss_pred             --------CCCceEEEEEecC--------CCCeEEecccCCeEEeeEecCCCC--------ceEEec---CCCcceeECC
Confidence                    7889999998766        668999999999999999885442        112221   2334578999


Q ss_pred             CCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      +|-++|++.....|++||++.-  .+...+.-...      .....+.+.|+|  +|+.++.++..+.+++.|.-.+ ..
T Consensus       151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~------~~~ew~~l~FS~--dGK~iLlsT~~s~~~~lDAf~G-~~  221 (311)
T KOG1446|consen  151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN------DEAEWTDLEFSP--DGKSILLSTNASFIYLLDAFDG-TV  221 (311)
T ss_pred             CCcEEEEecCCCeEEEEEecccCCCCceeEccCCC------CccceeeeEEcC--CCCEEEEEeCCCcEEEEEccCC-cE
Confidence            9999999988889999999863  22222211101      113478899998  7889999999999999998877 45


Q ss_pred             eeEEeecCCce---EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          251 VMSFDFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       251 ~~~~~~~~~~i---~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ..++..+...-   -..+|+||++++++|+.||+|++|++++++.+..+++.+.+++.++.|+|.-..++|++.
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            66776543322   455899999999999999999999999999999999844899999999998888887763

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.1e-27  Score=202.87  Aligned_cols=257  Identities=11%  Similarity=0.114  Sum_probs=211.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeee-ccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      ..+++++.+..|++|+...+     +.+.. +.  .+...+-++.+..  .+++|++|+.|.++++||..+|+....+. 
T Consensus       219 ~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~--GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-  288 (537)
T KOG0274|consen  219 GFFKSGSDDSTLHLWDLNNG-----YLILTRLV--GHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGECTHSLQ-  288 (537)
T ss_pred             CeEEecCCCceeEEeecccc-----eEEEeecc--CCCCCceeEEEec--CCCEEEEEecCCcEEeEecCCCcEEEEec-
Confidence            46889999999999999877     44444 43  3444555566543  45589999999999999999999988877 


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                             .|...+.++..          ....+++|+.|.+|++|++....        .+.+... +..+|.++..+  
T Consensus       289 -------gh~stv~~~~~----------~~~~~~sgs~D~tVkVW~v~n~~--------~l~l~~~-h~~~V~~v~~~--  340 (537)
T KOG0274|consen  289 -------GHTSSVRCLTI----------DPFLLVSGSRDNTVKVWDVTNGA--------CLNLLRG-HTGPVNCVQLD--  340 (537)
T ss_pred             -------CCCceEEEEEc----------cCceEeeccCCceEEEEeccCcc--------eEEEecc-ccccEEEEEec--
Confidence                   56678887775          44678888999999999988543        4555554 68899999997  


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +.++++|+.|++|++||+.+++++..+++|.         .+|+++.+.+.   ..+++|+.|++|++||+++..+++..
T Consensus       341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---------~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---------GRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             CCEEEEEecCceEEEEEhhhceeeeeecCCc---------ceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhh
Confidence            8999999999999999999999999998876         67889877642   48999999999999999976467889


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..|..-+..+.+  .+++|++++.||.|++||..++++++.+.+++.+.|..+++.  .+.+++++.||.+
T Consensus       409 l~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~  476 (537)
T KOG0274|consen  409 LQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSV  476 (537)
T ss_pred             hcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCee
Confidence            9999888866554  688999999999999999999999999998327899999886  5678888888864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.9e-28  Score=207.12  Aligned_cols=234  Identities=14%  Similarity=0.172  Sum_probs=196.6

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      .+-.++|  .+..++++++-.+|.|++||.+-+.++..+.        .|+++|.++.+.+        ....+++|+.|
T Consensus        11 RvKglsF--HP~rPwILtslHsG~IQlWDYRM~tli~rFd--------eHdGpVRgv~FH~--------~qplFVSGGDD   72 (1202)
T KOG0292|consen   11 RVKGLSF--HPKRPWILTSLHSGVIQLWDYRMGTLIDRFD--------EHDGPVRGVDFHP--------TQPLFVSGGDD   72 (1202)
T ss_pred             cccceec--CCCCCEEEEeecCceeeeehhhhhhHHhhhh--------ccCCccceeeecC--------CCCeEEecCCc
Confidence            3334555  4566799999999999999999998888877        7889999999877        44699999999


Q ss_pred             CcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      -.|++|++.....          ++. ..|-.-|+.+.||+.-.++++++.|.+|+||+..+.+++..+.+|.       
T Consensus        73 ykIkVWnYk~rrc----------lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn-------  135 (1202)
T KOG0292|consen   73 YKIKVWNYKTRRC----------LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN-------  135 (1202)
T ss_pred             cEEEEEeccccee----------hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc-------
Confidence            9999999876542          111 2345679999999999999999999999999999999999988865       


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC----------------------------ceeEEeecCCceEE
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----------------------------PVMSFDFRETPIKA  263 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~----------------------------~~~~~~~~~~~i~~  263 (326)
                        .+|.+.+|+|.++  +++++|-|.+||+||+...++                            .-+.+++|+..|+-
T Consensus       136 --HYVMcAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw  211 (1202)
T KOG0292|consen  136 --HYVMCAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW  211 (1202)
T ss_pred             --eEEEeeccCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence              6799999999755  999999999999999753211                            11345688899999


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCCCeE--EEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          264 VAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       264 v~~s~~~~~l~~g~~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      ++|+|.-..|++|+.|+.|++|.+...+.  +-+.++| .+.|.++-|||...+|+|.|.|+.++
T Consensus       212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksir  275 (1202)
T KOG0292|consen  212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIR  275 (1202)
T ss_pred             EEecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEE
Confidence            99999999999999999999999875543  5567898 99999999999999999999999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.6e-28  Score=192.48  Aligned_cols=263  Identities=15%  Similarity=0.149  Sum_probs=199.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -++.+|+.|-.|++|+..++.   ..+......  ....+..+.+  +..+.++++++.|+.+++|++...+...++.  
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaG--s~g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--  258 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEK---SELISTLAG--SLGNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLS--  258 (459)
T ss_pred             chhhhcchhhhhhhhhcccch---hhhhhhhhc--cCCCcceeee--cCCCceEEeecCCCceeeeeccchhhhhhhc--
Confidence            468999999999999998761   112222221  2223334444  4455689999999999999999888877766  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|.+.|+++.++.        ....+++++.|.++++||+.....        .+..-  ....+..+...  .
T Consensus       259 ------GHtdkVt~ak~~~--------~~~~vVsgs~DRtiK~WDl~k~~C--------~kt~l--~~S~cnDI~~~--~  312 (459)
T KOG0288|consen  259 ------GHTDKVTAAKFKL--------SHSRVVSGSADRTIKLWDLQKAYC--------SKTVL--PGSQCNDIVCS--I  312 (459)
T ss_pred             ------ccccceeeehhhc--------cccceeeccccchhhhhhhhhhhe--------ecccc--ccccccceEec--c
Confidence                  6778999888765        334599999999999999876331        11111  12344445444  5


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ..+++|..|++|+.||+++..+......+          ..|+++..++  ++..+++++.|.++.+.|+++. ...+.+
T Consensus       313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~ls~--~g~~lLsssRDdtl~viDlRt~-eI~~~~  379 (459)
T KOG0288|consen  313 SDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDLSM--DGLELLSSSRDDTLKVIDLRTK-EIRQTF  379 (459)
T ss_pred             eeeeecccccceEEEeccCCceeeEeecC----------cceeeEeecc--CCeEEeeecCCCceeeeecccc-cEEEEe
Confidence            67889999999999999998888775543          3588888887  5678999999999999999976 445555


Q ss_pred             eec----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc-eEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ...    ....+.+.|||++.|+++|+.||.|+||++.++++...+...... .|++++|+|.|..|++++.++++
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v  455 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV  455 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence            432    235788999999999999999999999999999998888754233 69999999999999999998864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.1e-26  Score=170.35  Aligned_cols=266  Identities=12%  Similarity=0.085  Sum_probs=199.4

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      -|++|+.|..||+|+...++.  . .+...-+..+.+.+-.+.|  ++.+++|++|+.|.++.||.-..+++.. ...+ 
T Consensus        29 ilAscg~Dk~vriw~~~~~~s--~-~ck~vld~~hkrsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efec-v~~l-  101 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSGDS--W-TCKTVLDDGHKRSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFEC-VATL-  101 (312)
T ss_pred             EEEeecCCceEEEEecCCCCc--E-EEEEeccccchheeeeeee--cCCCcEEEEeeccceEEEeecCCCceeE-Eeee-
Confidence            699999999999999985311  1 1111222345555544544  5566699999999999999887776633 3322 


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  175 (326)
                          .+|++.|.++++.+        ++++|++|+.|..|-||.+...+..     ..+.+.+ .|.+.|..+.|||...
T Consensus       102 ----EGHEnEVK~Vaws~--------sG~~LATCSRDKSVWiWe~deddEf-----ec~aVL~-~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen  102 ----EGHENEVKCVAWSA--------SGNYLATCSRDKSVWIWEIDEDDEF-----ECIAVLQ-EHTQDVKHVIWHPTED  163 (312)
T ss_pred             ----eccccceeEEEEcC--------CCCEEEEeeCCCeEEEEEecCCCcE-----EEEeeec-cccccccEEEEcCCcc
Confidence                27789999999877        7789999999999999998754432     1334444 4567899999999999


Q ss_pred             EEEEecCCCeEEEEECCC-c--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          176 FSLFGGKGVEVNVWDLDK-C--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       176 ~l~sg~~d~~i~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      +|++++.|++|++|+-.. .  .++.++.++.         ..|-+++|.|  .|..|++++.|++|+||-.+..-.   
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~---------~TVW~~~F~~--~G~rl~s~sdD~tv~Iw~~~~~~~---  229 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE---------NTVWSLAFDN--IGSRLVSCSDDGTVSIWRLYTDLS---  229 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecCcc---------ceEEEEEecC--CCceEEEecCCcceEeeeeccCcc---
Confidence            999999999999999773 2  3566666654         3577899987  466999999999999999774311   


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC------eEEE-EEcceecceEEEEEECCC-CCEEEEeccCcc
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLG-CFIGKCSGSIRSIARHPT-LPIIASCGFLEA  324 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~------~~~~-~~~~~~~~~v~~l~~~p~-~~~l~s~s~D~~  324 (326)
                        ..|..+++.++|.  ...|++++.|+.|++|.-...      +++. .-..| ...|++++|+|. ..+|++||.||.
T Consensus       230 --~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  230 --GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             --hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCCCCCceeecCCCce
Confidence              1366789999997  458999999999999976642      1222 22356 889999999994 679999999997


Q ss_pred             C
Q 020454          325 A  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       305 v  305 (312)
T KOG0645|consen  305 V  305 (312)
T ss_pred             E
Confidence            5

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=8.3e-27  Score=174.48  Aligned_cols=229  Identities=11%  Similarity=0.063  Sum_probs=184.7

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      .+...+..|++|+.|+++++|+++..++......      .+|.+.+-.+.+.+++       .+.+++++.|..|++||
T Consensus        27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~------~gh~~svdql~w~~~~-------~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVY------RGHTDSVDQLCWDPKH-------PDLFATASGDKTIRIWD   93 (313)
T ss_pred             EEcccCceeeecccCCceEEEEecchhhhhhhcc------cCCCcchhhheeCCCC-------CcceEEecCCceEEEEE
Confidence            3445666899999999999999987766555443      2566677778877753       47899999999999999


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      +.....        +...  .....=.-+.|+|+|++++.+++|..|...|.++.+.+...+.          ...+..+
T Consensus        94 ~r~~k~--------~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~----------~~e~ne~  153 (313)
T KOG1407|consen   94 IRSGKC--------TARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF----------KFEVNEI  153 (313)
T ss_pred             eccCcE--------EEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc----------cceeeee
Confidence            876442        2221  2233334578999999999999999999999998776554322          1235677


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~  299 (326)
                      .|+-  ++++|+..+..|.|.|...... +|+.+++.|.....|+.|+|+|+++|+|+.|-.+.+||+...-+++.+..+
T Consensus       154 ~w~~--~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl  230 (313)
T KOG1407|consen  154 SWNN--SNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL  230 (313)
T ss_pred             eecC--CCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence            8873  4458888888899999998876 789999999999999999999999999999999999999988888888876


Q ss_pred             ecceEEEEEECCCCCEEEEeccCccC
Q 020454          300 CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       300 ~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                       .-+|+.|.|+.+|++||++|.|..+
T Consensus       231 -dwpVRTlSFS~dg~~lASaSEDh~I  255 (313)
T KOG1407|consen  231 -DWPVRTLSFSHDGRMLASASEDHFI  255 (313)
T ss_pred             -cCceEEEEeccCcceeeccCccceE
Confidence             9999999999999999999999753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.2e-27  Score=176.06  Aligned_cols=220  Identities=15%  Similarity=0.178  Sum_probs=177.9

Q ss_pred             cCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccc
Q 020454           73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS  152 (326)
Q Consensus        73 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~  152 (326)
                      .+|++.|.++...+-+.+...+      .-++.+.++++.+       +.++.+++++.||.+++||+...       .+
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~------d~~D~LfdV~Wse-------~~e~~~~~a~GDGSLrl~d~~~~-------s~   95 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSY------DTEDGLFDVAWSE-------NHENQVIAASGDGSLRLFDLTMP-------SK   95 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEee------ecccceeEeeecC-------CCcceEEEEecCceEEEeccCCC-------Cc
Confidence            4588999999655555555544      2235677788755       25688999999999999995432       33


Q ss_pred             eEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454          153 TVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~  231 (326)
                      ++..|+ .|..+|.++.+++.. ..+++++.|++|++|+...++.+.++.+|.         .-|+..+|+|. .+++++
T Consensus        96 Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~---------~~Iy~a~~sp~-~~nlfa  164 (311)
T KOG0277|consen   96 PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN---------SCIYQAAFSPH-IPNLFA  164 (311)
T ss_pred             chhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc---------cEEEEEecCCC-CCCeEE
Confidence            777777 457899999999864 677888999999999999888888877754         55889999997 566999


Q ss_pred             EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEE
Q 020454          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIAR  309 (326)
Q Consensus       232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~  309 (326)
                      +++.|+++++||++...++ ..+..|...|.++.|+.- .+.+++|+.|+.|+.||++..+ ++..+.+| .-.|+.++|
T Consensus       165 s~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~  242 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKF  242 (311)
T ss_pred             EccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEec
Confidence            9999999999999976454 448899999999999874 5677899999999999999754 57788898 999999999


Q ss_pred             CCC-CCEEEEeccCccC
Q 020454          310 HPT-LPIIASCGFLEAA  325 (326)
Q Consensus       310 ~p~-~~~l~s~s~D~~~  325 (326)
                      +|. ..+|||+|.|-++
T Consensus       243 Sph~~~lLaSasYDmT~  259 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTV  259 (311)
T ss_pred             CcchhhHhhhccccceE
Confidence            994 4689999999654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=184.17  Aligned_cols=268  Identities=16%  Similarity=0.188  Sum_probs=216.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCccee--eeccCC----CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDP----HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~   88 (326)
                      --|++|+.||.|.||+..++     ++.  ..|...    -....+++++|.-+  ...|++|+.||.|++|.+++|.++
T Consensus       226 qyLvsgSvDGFiEVWny~~G-----KlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIKvWri~tG~Cl  298 (508)
T KOG0275|consen  226 QYLVSGSVDGFIEVWNYTTG-----KLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIKVWRIETGQCL  298 (508)
T ss_pred             ceEeeccccceeeeehhccc-----hhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEEEEEEecchHH
Confidence            56999999999999999877     221  122211    12334555565443  448999999999999999999999


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      ..+..       .|...|+++.+..        ++..+++++.|-.+++.-+....        .++.++ .+..-|+..
T Consensus       299 RrFdr-------AHtkGvt~l~FSr--------D~SqiLS~sfD~tvRiHGlKSGK--------~LKEfr-GHsSyvn~a  354 (508)
T KOG0275|consen  299 RRFDR-------AHTKGVTCLSFSR--------DNSQILSASFDQTVRIHGLKSGK--------CLKEFR-GHSSYVNEA  354 (508)
T ss_pred             HHhhh-------hhccCeeEEEEcc--------CcchhhcccccceEEEeccccch--------hHHHhc-Cccccccce
Confidence            99886       6778899999766        66789999999999999876544        334443 345678899


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~  248 (326)
                      .|.++|+.+++++.||+|++|+..+.+++.+++....+       ..|.++-..|.+ ...+++|...++|+|.++..  
T Consensus       355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d-------~~vnsv~~~PKn-peh~iVCNrsntv~imn~qG--  424 (508)
T KOG0275|consen  355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD-------YPVNSVILLPKN-PEHFIVCNRSNTVYIMNMQG--  424 (508)
T ss_pred             EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-------ccceeEEEcCCC-CceEEEEcCCCeEEEEeccc--
Confidence            99999999999999999999999999998887765533       358888888864 55899999999999999884  


Q ss_pred             CceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          249 RPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       249 ~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +.+.++...   .+...+.+.+|.|.++++.++|+.++.|...+|++...+..| +..|..++-+|..+.||+-+.||.
T Consensus       425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-EkdvIGl~HHPHqNllAsYsEDgl  502 (508)
T KOG0275|consen  425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKDVIGLTHHPHQNLLASYSEDGL  502 (508)
T ss_pred             eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-cccccccccCcccchhhhhcccch
Confidence            457777642   234555589999999999999999999999999999999998 999999999999999999999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=6.5e-28  Score=179.39  Aligned_cols=268  Identities=15%  Similarity=0.161  Sum_probs=209.0

Q ss_pred             CCCCCC-eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454            9 CPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (326)
Q Consensus         9 ~~~~~~-~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~   87 (326)
                      ++-||. +-|+++..||.-.+-+-+++     ..+-+|..  +...+...+...  +...-++++.|=+-++||.-+|..
T Consensus        23 s~itp~g~flisa~kd~~pmlr~g~tg-----dwigtfeg--hkgavw~~~l~~--na~~aasaaadftakvw~a~tgde   93 (334)
T KOG0278|consen   23 SPITPDGYFLISASKDGKPMLRNGDTG-----DWIGTFEG--HKGAVWSATLNK--NATRAASAAADFTAKVWDAVTGDE   93 (334)
T ss_pred             cCCCCCceEEEEeccCCCchhccCCCC-----CcEEeeec--cCcceeeeecCc--hhhhhhhhcccchhhhhhhhhhhh
Confidence            345565 77889999998888777766     44445542  333444444332  223568889999999999999987


Q ss_pred             eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  167 (326)
                      +..+..         ..-|..+++..        +.++|++++.+..+++++++..+..       .+.+. .+.+.|..
T Consensus        94 lhsf~h---------khivk~~af~~--------ds~~lltgg~ekllrvfdln~p~Ap-------p~E~~-ghtg~Ir~  148 (334)
T KOG0278|consen   94 LHSFEH---------KHIVKAVAFSQ--------DSNYLLTGGQEKLLRVFDLNRPKAP-------PKEIS-GHTGGIRT  148 (334)
T ss_pred             hhhhhh---------hheeeeEEecc--------cchhhhccchHHHhhhhhccCCCCC-------chhhc-CCCCccee
Confidence            777654         24566677654        6789999999999999999876532       11111 23567888


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      +-|....+.|+++..|++||+||.+++..+..+..          +..|+++..++  +| .+++....+.|.+||..+.
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~----------~s~VtSlEvs~--dG-~ilTia~gssV~Fwdaksf  215 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF----------NSPVTSLEVSQ--DG-RILTIAYGSSVKFWDAKSF  215 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEec----------CCCCcceeecc--CC-CEEEEecCceeEEeccccc
Confidence            88888888888989999999999999998877543          34578888887  55 5677777889999999987


Q ss_pred             CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE-cceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                       .+++.++.. ..|.+.+++|+...+++|+.|..++.||..+++.+..+ ++| .++|.++.|+|+|...++||.||+++
T Consensus       216 -~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTir  292 (334)
T KOG0278|consen  216 -GLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIR  292 (334)
T ss_pred             -cceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEE
Confidence             567777665 56888899999999999999999999999999999887 788 99999999999999999999999863

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.5e-25  Score=192.05  Aligned_cols=261  Identities=13%  Similarity=0.148  Sum_probs=183.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccC-----------CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-----------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL   83 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~   83 (326)
                      -.++++..+.....|+..++     ..+....+           ..+...+..+.|... ++.+|++|+.||+|++||+.
T Consensus        33 ~~~~~~n~~~~a~~w~~~gg-----~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~  106 (493)
T PTZ00421         33 SNTIACNDRFIAVPWQQLGS-----TAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASEDGTIMGWGIP  106 (493)
T ss_pred             CCcEeECCceEEEEEecCCc-----eEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCCCEEEEEecC
Confidence            45788888888888887654     11111110           123445556666431 34589999999999999997


Q ss_pred             ccceee----eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454           84 NGDLRV----AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        84 ~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      ++....    .+..+     ..|...|.++.+.+.       ..+.|++++.|+.|++||++...        .+..+. 
T Consensus       107 ~~~~~~~~~~~l~~L-----~gH~~~V~~l~f~P~-------~~~iLaSgs~DgtVrIWDl~tg~--------~~~~l~-  165 (493)
T PTZ00421        107 EEGLTQNISDPIVHL-----QGHTKKVGIVSFHPS-------AMNVLASAGADMVVNVWDVERGK--------AVEVIK-  165 (493)
T ss_pred             CCccccccCcceEEe-----cCCCCcEEEEEeCcC-------CCCEEEEEeCCCEEEEEECCCCe--------EEEEEc-
Confidence            653211    11111     256688988887541       23589999999999999987533        233333 


Q ss_pred             cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe----C
Q 020454          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----N  235 (326)
Q Consensus       160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~----~  235 (326)
                      .+...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...        .+..+.|.+.  +..+++++    .
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~--------~~~~~~w~~~--~~~ivt~G~s~s~  235 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA--------KSQRCLWAKR--KDLIITLGCSKSQ  235 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC--------cceEEEEcCC--CCeEEEEecCCCC
Confidence            34678999999999999999999999999999999888777665422        1335667764  23555543    5


Q ss_pred             CCeEEEEeCCCCCCceeEEeecC-CceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      |+.|++||++....++.....+. ..+....|++++++|++|+ .|+.|++||+.+++++.........++..++|.|.
T Consensus       236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            89999999997655665554333 3455667899999999877 59999999999998877655433567888888875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-25  Score=169.26  Aligned_cols=224  Identities=13%  Similarity=0.144  Sum_probs=174.8

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +.+|++++.|+.|++|+...+.-......+    ...|...|+.+++.+        .+.+|++++.|.++.||.-...+
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vl----d~~hkrsVRsvAwsp--------~g~~La~aSFD~t~~Iw~k~~~e   94 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVL----DDGHKRSVRSVAWSP--------HGRYLASASFDATVVIWKKEDGE   94 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEec----cccchheeeeeeecC--------CCcEEEEeeccceEEEeecCCCc
Confidence            557999999999999998643221111110    126778999999866        67799999999999999854322


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce---eeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                            -..+...+ .+..+|.|++|+++|++||+++.|+.|-||.+....   +...++.|.         ..|..+.|
T Consensus        95 ------fecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht---------qDVK~V~W  158 (312)
T KOG0645|consen   95 ------FECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT---------QDVKHVIW  158 (312)
T ss_pred             ------eeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc---------ccccEEEE
Confidence                  11233333 457789999999999999999999999999987543   455566665         44778999


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCC--CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~  299 (326)
                      +|..+  +|++++.|.+|++|+-..  .-.+++++..|...|.+++|+|.|..|++++.|++++||-..+.     +.+-
T Consensus       159 HPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~  231 (312)
T KOG0645|consen  159 HPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGM  231 (312)
T ss_pred             cCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchh
Confidence            99755  999999999999998652  22468899999999999999999999999999999999987632     3322


Q ss_pred             ecceEEEEEECCCCCEEEEeccCccC
Q 020454          300 CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       300 ~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |..++..++|.  +..|+|++.|+++
T Consensus       232 ~sr~~Y~v~W~--~~~IaS~ggD~~i  255 (312)
T KOG0645|consen  232 HSRALYDVPWD--NGVIASGGGDDAI  255 (312)
T ss_pred             cccceEeeeec--ccceEeccCCCEE
Confidence            37899999998  5689999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.3e-26  Score=181.87  Aligned_cols=236  Identities=13%  Similarity=0.134  Sum_probs=179.3

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      ++.+++|+.||.+++||. .|+....+.        +|.++|....+...+.     ....+++++.|.++++|.++...
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~--------Ght~~ik~v~~v~~n~-----~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIV--------GHTGPIKSVAWVIKNS-----SSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEe--------cCCcceeeeEEEecCC-----ccceEEEecCCceEEEEEecCch
Confidence            568999999999999999 677766665        6778998887766442     44579999999999999988654


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce--eeeeec-------------CCCCCC-C
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAK-------------PPPKNS-L  208 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~-------------~~~~~~-~  208 (326)
                      ...    ..++.- ..|...|.+++..+++..+++|+.|.+|.||+..+..  ......             ...... .
T Consensus       181 ~~~----~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  181 NKV----KALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             hhh----hHHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            211    111111 1567889999999999999999999999999943210  000000             000001 1


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ...|...|.++.|.+   ...+.+++.|.+|+.||+.++ ....++.. ...++++.++|..++|++|+.|..+++||.+
T Consensus       256 l~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             ecccccceeeEEEcC---CCceEeecccceEEEEEeecc-cceeeeec-CcceeEeecccccceeeecCCCCceeecCCC
Confidence            112557899999986   338999999999999999987 55555544 4779999999999999999999999999999


Q ss_pred             CC--e-EEEEEcceecceEEEEEECCCC-CEEEEeccCccC
Q 020454          289 TG--K-LLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAA  325 (326)
Q Consensus       289 ~~--~-~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~  325 (326)
                      ++  + ..++|.+| .+.|.++.|+|.+ ..|+++|.|+++
T Consensus       331 ~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~  370 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTV  370 (423)
T ss_pred             CCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeE
Confidence            75  3 45778998 9999999999965 578999999975

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.4e-26  Score=183.37  Aligned_cols=224  Identities=14%  Similarity=0.157  Sum_probs=188.2

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      .+.+++|+.|..+.++|...++.+..+.        +|...|..+.+.+        ....+++++.|-.|++|......
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~--------Gh~kki~~v~~~~--------~~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILATLK--------GHTKKITSVKFHK--------DLDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhhhcc--------CcceEEEEEEecc--------chhheeecCCcceEEeecccccc
Confidence            4579999999999999999888887776        6667788777544        55689999999999999965432


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                      .        .... ..+..+|+.+..||+|.||++++.|++....|++++..+........+       ..+++.+|+| 
T Consensus       295 ~--------~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~-------v~~ts~~fHp-  357 (506)
T KOG0289|consen  295 E--------PTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD-------VEYTSAAFHP-  357 (506)
T ss_pred             C--------cccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc-------ceeEEeeEcC-
Confidence            1        1111 235789999999999999999999999999999999987775543222       3478999999 


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceE
Q 020454          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (326)
Q Consensus       225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v  304 (326)
                       ||.+|.+|+.|+.|+|||+.++ ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|..+...++......+|
T Consensus       358 -DgLifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v  435 (506)
T KOG0289|consen  358 -DGLIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEV  435 (506)
T ss_pred             -CceEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccc
Confidence             7879999999999999999987 46889999999999999999999999999999999999999888888774323479


Q ss_pred             EEEEECCCCCEEEEeccCc
Q 020454          305 RSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       305 ~~l~~~p~~~~l~s~s~D~  323 (326)
                      .++.|.+.|.+|+.+|.|=
T Consensus       436 ~s~~fD~SGt~L~~~g~~l  454 (506)
T KOG0289|consen  436 NSLSFDQSGTYLGIAGSDL  454 (506)
T ss_pred             eeEEEcCCCCeEEeeccee
Confidence            9999999999999998763

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=178.76  Aligned_cols=265  Identities=11%  Similarity=0.112  Sum_probs=207.2

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      ...++||+.|..+-++|....     .+...+.  .+...+.++-+.  +....+++++.|-.|+||...........  
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~-----q~l~~~~--Gh~kki~~v~~~--~~~~~v~~aSad~~i~vws~~~~s~~~~~--  299 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSN-----QILATLK--GHTKKITSVKFH--KDLDTVITASADEIIRVWSVPLSSEPTSS--  299 (506)
T ss_pred             CCcceecCCCCceEEEecchh-----hhhhhcc--CcceEEEEEEec--cchhheeecCCcceEEeeccccccCcccc--
Confidence            477899999999999999877     4544554  334444444443  33346899999999999998655532222  


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~  172 (326)
                            ..|+.+|.+++..+        .+.++++++.||...+.|++...        .+..... ...-.+.+.+|||
T Consensus       300 ------~~h~~~V~~ls~h~--------tgeYllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  300 ------RPHEEPVTGLSLHP--------TGEYLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             ------ccccccceeeeecc--------CCcEEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcC
Confidence                  26778999888655        67899999999999999977543        2222222 2345699999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      ||.+|.+|..|+.|+|||+.++..+..+.+|.         ..|.+++|+-  +|.+|++++.|+.|++||+|.. +...
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght---------~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl-~n~k  425 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---------GPVKAISFSE--NGYWLATAADDGSVKLWDLRKL-KNFK  425 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCCCC---------CceeEEEecc--CceEEEEEecCCeEEEEEehhh-cccc
Confidence            99999999999999999999888777766654         6799999985  7889999999999999999976 4566


Q ss_pred             EEeecC-CceEEEEecCCCCeEEEEcCCCcEEEEECCC--CeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          253 SFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       253 ~~~~~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      ++...+ ..+.++.|.+.|.+|+.++.|=.|++++-.+  ...+..+..| .+..+.+.|....++++++|+|+.
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH-SGLSTGVRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc-ccccceeeecccceEEeeccchhh
Confidence            666543 4799999999999999998887777777544  4566677777 889999999999999999999974

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-25  Score=171.59  Aligned_cols=267  Identities=13%  Similarity=0.157  Sum_probs=203.8

Q ss_pred             eeeeeecCcccEEEEEecCCc-----CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454           15 LRALTFDSLGLIKVIEARGEH-----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      |++++|+..-.|.=+++....     ...+.+...|..+.+...+.+++.    +++++++|+.|-+|+|||+.....+.
T Consensus         2 m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg   77 (362)
T KOG0294|consen    2 MEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLG   77 (362)
T ss_pred             eeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhc
Confidence            899999999999888876552     334455556666666666666655    35589999999999999998776655


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  169 (326)
                      .+.        .|.+.|+++.++.+.      ..+.|++|++||.|.+|+...-        ..++.+.. +...|+.++
T Consensus        78 ~ll--------~HagsitaL~F~~~~------S~shLlS~sdDG~i~iw~~~~W--------~~~~slK~-H~~~Vt~ls  134 (362)
T KOG0294|consen   78 ILL--------SHAGSITALKFYPPL------SKSHLLSGSDDGHIIIWRVGSW--------ELLKSLKA-HKGQVTDLS  134 (362)
T ss_pred             cee--------ccccceEEEEecCCc------chhheeeecCCCcEEEEEcCCe--------EEeeeecc-cccccceeE
Confidence            554        556899999987622      2347999999999999996542        24444443 455699999


Q ss_pred             EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      +||.+++.++.+.|+.+++||+.+++.-+.+.-..          .-+.+.|+|.  |.+|+.+..+ .|-+|.+... .
T Consensus       135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~----------~at~v~w~~~--Gd~F~v~~~~-~i~i~q~d~A-~  200 (362)
T KOG0294|consen  135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN----------KATLVSWSPQ--GDHFVVSGRN-KIDIYQLDNA-S  200 (362)
T ss_pred             ecCCCceEEEEcCCceeeeehhhcCccceeeccCC----------cceeeEEcCC--CCEEEEEecc-EEEEEecccH-h
Confidence            99999999999999999999999988766543322          1235899974  5577777754 5889998864 3


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEE--CCCCCEEEEeccCccC
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGFLEAA  325 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~l~s~s~D~~~  325 (326)
                      ....+... ..+.++.|- ++.++++|..|+.|.+||-.++.++..+.+| ..+|.++.+  .|++.+|+|+|.||.+
T Consensus       201 v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I  275 (362)
T KOG0294|consen  201 VFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGFI  275 (362)
T ss_pred             Hhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCceE
Confidence            33333332 456666664 6789999999999999999999999999998 999999984  3788999999999965

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=7.7e-26  Score=172.46  Aligned_cols=238  Identities=13%  Similarity=0.174  Sum_probs=184.4

Q ss_pred             CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (326)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~  127 (326)
                      +.+...+..+.|.+  ++.+|++|+.|..|.+|+.. +........      ..|.++|..+.+..        +.+.++
T Consensus        44 ~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~-gdceN~~~l------kgHsgAVM~l~~~~--------d~s~i~  106 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVY-GDCENFWVL------KGHSGAVMELHGMR--------DGSHIL  106 (338)
T ss_pred             CCCcceEEEEEECC--CCCeEeecCCcceEEEEecc-ccccceeee------ccccceeEeeeecc--------CCCEEE
Confidence            34555566666654  67799999999999999963 222111111      26779999999876        778999


Q ss_pred             EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                      +++.|.+++.||++...        .++.++. +...++.+....-| .++.+|+.|+++++||+++...+....+.   
T Consensus       107 S~gtDk~v~~wD~~tG~--------~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---  174 (338)
T KOG0265|consen  107 SCGTDKTVRGWDAETGK--------RIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---  174 (338)
T ss_pred             EecCCceEEEEecccce--------eeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---
Confidence            99999999999987654        3444332 34567777744444 67889999999999999987776654331   


Q ss_pred             CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                             -.++++.|..  .+..+.+|+-|+.|++||+|.. ...+.+.+|..+|+.+..+|+|.++.+-+.|.++++||
T Consensus       175 -------yqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd  244 (338)
T KOG0265|consen  175 -------YQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWD  244 (338)
T ss_pred             -------eeEEEEEecc--cccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEE
Confidence                   3477888875  4558999999999999999977 66899999999999999999999999999999999999


Q ss_pred             CCC----CeEEEEEcceecc----eEEEEEECCCCCEEEEeccCccC
Q 020454          287 IRT----GKLLGCFIGKCSG----SIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       287 ~~~----~~~~~~~~~~~~~----~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++-    .+++..+.+| ..    .....+|+|++..+.+|+.|+.+
T Consensus       245 ~rp~~p~~R~v~if~g~-~hnfeknlL~cswsp~~~~i~ags~dr~v  290 (338)
T KOG0265|consen  245 VRPFAPSQRCVKIFQGH-IHNFEKNLLKCSWSPNGTKITAGSADRFV  290 (338)
T ss_pred             ecccCCCCceEEEeecc-hhhhhhhcceeeccCCCCccccccccceE
Confidence            984    3557778775 32    34467899999999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.3e-25  Score=170.48  Aligned_cols=257  Identities=12%  Similarity=0.121  Sum_probs=193.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..|++++=||.+++|++...     .+...+   .+...++.++|.+...   +++|+.||.|+.+|+.+++. ..+.  
T Consensus        26 ~~LLvssWDgslrlYdv~~~-----~l~~~~---~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~~~~-~~ig--   91 (323)
T KOG1036|consen   26 SDLLVSSWDGSLRLYDVPAN-----SLKLKF---KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNTGNE-DQIG--   91 (323)
T ss_pred             CcEEEEeccCcEEEEeccch-----hhhhhe---ecCCceeeeeccCCce---EEEeccCceEEEEEecCCcc-eeec--
Confidence            45788889999999999865     232233   2344577888876444   99999999999999987764 2222  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|..++.++....        ..+.+++++.|+.|++||.....          ........+.|.++...  +
T Consensus        92 ------th~~~i~ci~~~~--------~~~~vIsgsWD~~ik~wD~R~~~----------~~~~~d~~kkVy~~~v~--g  145 (323)
T KOG1036|consen   92 ------THDEGIRCIEYSY--------EVGCVISGSWDKTIKFWDPRNKV----------VVGTFDQGKKVYCMDVS--G  145 (323)
T ss_pred             ------cCCCceEEEEeec--------cCCeEEEcccCccEEEEeccccc----------cccccccCceEEEEecc--C
Confidence                  5668899998765        56799999999999999977422          11112234578888775  6


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---Cce
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV  251 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---~~~  251 (326)
                      +.|++|+.|..+.+||+++....++.......       -.+.++++.|+..|  ++.++-||+|.+=.+....   ..-
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk-------yqtR~v~~~pn~eG--y~~sSieGRVavE~~d~s~~~~skk  216 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK-------YQTRCVALVPNGEG--YVVSSIEGRVAVEYFDDSEEAQSKK  216 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhccccce-------eEEEEEEEecCCCc--eEEEeecceEEEEccCCchHHhhhc
Confidence            88889999999999999987765543222211       24779999996554  7888889988775544320   112


Q ss_pred             eEEeecC---------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          252 MSFDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       252 ~~~~~~~---------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ..|+.|.         .+|++++|+|--..+++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||.++.
T Consensus       217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence            3444442         28999999999999999999999999999999999888876 788999999999999998863

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=4.3e-26  Score=182.85  Aligned_cols=241  Identities=16%  Similarity=0.165  Sum_probs=177.0

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeec-ccCC-CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAIS-NAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      +..++++++..+.|.|||..+-.-..... ...+ .....|++.-.+|.+.. +      ....+++++.|+.|.+||++
T Consensus       136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~-~------~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR-Q------QEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc-c------cceeEeeccCCCcEEEEecc
Confidence            34478888999999999986432222111 0000 00113334334455432 2      45789999999999999998


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCC--ceeeeeecCCCCCCCCcCCCCceee
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTS  218 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~  218 (326)
                      ..... .... ..+.+--.+...|..++|++.. .+|++++.|+.+.|||+++  .++....+.         |...|.+
T Consensus       209 ~~~~~-~~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a---------h~~~vn~  277 (422)
T KOG0264|consen  209 AESKE-DKVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA---------HSAEVNC  277 (422)
T ss_pred             ccccC-Cccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc---------cCCceeE
Confidence            65532 1112 2333344567889999999965 7889999999999999995  333333333         3467899


Q ss_pred             eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCC--------
Q 020454          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRT--------  289 (326)
Q Consensus       219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~--------  289 (326)
                      ++|.|.+ +..||+|+.|++|.+||+|+..++++++..|+..|..|.|+|+ ...|++++.|+.+.+||+..        
T Consensus       278 ~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  278 VAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9999974 5699999999999999999988899999999999999999998 56777899999999999974        


Q ss_pred             ------CeEEEEEcceecceEEEEEECCCCCE-EEEeccCcc
Q 020454          290 ------GKLLGCFIGKCSGSIRSIARHPTLPI-IASCGFLEA  324 (326)
Q Consensus       290 ------~~~~~~~~~~~~~~v~~l~~~p~~~~-l~s~s~D~~  324 (326)
                            .+++..-.|| ...|..+.|+|..++ |+|.+.|+.
T Consensus       357 da~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~  397 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNI  397 (422)
T ss_pred             hhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCce
Confidence                  1345556687 999999999998875 667777754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-24  Score=167.56  Aligned_cols=231  Identities=16%  Similarity=0.176  Sum_probs=178.8

Q ss_pred             EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--
Q 020454           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--  131 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--  131 (326)
                      +.++.+.  .++.+|++++.|.+++|||..+++.+..+...       + -.+-...+..        +...++.++.  
T Consensus        17 i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-------k-yG~~~~~Fth--------~~~~~i~sStk~   78 (311)
T KOG1446|consen   17 INSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-------K-YGVDLACFTH--------HSNTVIHSSTKE   78 (311)
T ss_pred             eeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEeecc-------c-ccccEEEEec--------CCceEEEccCCC
Confidence            4455554  44558999999999999999999998888752       1 1222233333        4456776666  


Q ss_pred             CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      |..|+..++..+.        .+|.+. .|...|.+++.+|-+..+++++.|++|++||++..++.-.+....       
T Consensus        79 d~tIryLsl~dNk--------ylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-------  142 (311)
T KOG1446|consen   79 DDTIRYLSLHDNK--------YLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-------  142 (311)
T ss_pred             CCceEEEEeecCc--------eEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-------
Confidence            7899988877654        677766 567899999999999999999999999999999666544333222       


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-CCceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                          -..++|.|  +|-++|++.....|++||+|.. +.|..++...   ....+.+.|||||++|+.++..+.+++.|.
T Consensus       143 ----~pi~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  143 ----RPIAAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA  216 (311)
T ss_pred             ----CcceeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence                11458888  5668888887779999999965 5677777655   668999999999999999999999999999


Q ss_pred             CCCeEEEEEcceecceE---EEEEECCCCCEEEEeccCccC
Q 020454          288 RTGKLLGCFIGKCSGSI---RSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       288 ~~~~~~~~~~~~~~~~v---~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      -+|..+..+.++ ...-   -+..|.|+++++++|+.||.+
T Consensus       217 f~G~~~~tfs~~-~~~~~~~~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  217 FDGTVKSTFSGY-PNAGNLPLSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             cCCcEeeeEeec-cCCCCcceeEEECCCCcEEEEecCCCcE
Confidence            999999988875 3322   467899999999999999974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=3.4e-25  Score=189.77  Aligned_cols=281  Identities=14%  Similarity=0.189  Sum_probs=202.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .+++.|..+|.+++|+++++     +++.++.+-.  ..+.++  ..++.-+.+++|..+|+|.++++..++.+..++. 
T Consensus       173 NKIvvGs~~G~lql~Nvrt~-----K~v~~f~~~~--s~IT~i--eqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~-  242 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTG-----KVVYTFQEFF--SRITAI--EQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ-  242 (910)
T ss_pred             eeEEEeecCCcEEEEEeccC-----cEEEEecccc--cceeEe--ccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-
Confidence            78999999999999999999     8888887544  333322  3334445799999999999999999999888873 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc------------------------ccccc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS  150 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~------------------------~~~~~  150 (326)
                             ..++|..+.+-. +      ....++++...|.+.+||++....                        .+...
T Consensus       243 -------d~g~VtslSFrt-D------G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~  308 (910)
T KOG1539|consen  243 -------DWGRVTSLSFRT-D------GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA  308 (910)
T ss_pred             -------cccceeEEEecc-C------CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence                   358899888533 1      124577777779999999887543                        11111


Q ss_pred             cceEE---------------------------------------------------------------------------
Q 020454          151 CSTVK---------------------------------------------------------------------------  155 (326)
Q Consensus       151 ~~~~~---------------------------------------------------------------------------  155 (326)
                      |..++                                                                           
T Consensus       309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~  388 (910)
T KOG1539|consen  309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF  388 (910)
T ss_pred             CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence            22222                                                                           


Q ss_pred             -------------------------------------EEEccCC----------------CceEEEEEcCCCCEEEEecC
Q 020454          156 -------------------------------------SWNVCAS----------------GTIAFSKVDISEKFSLFGGK  182 (326)
Q Consensus       156 -------------------------------------~~~~~~~----------------~~v~~~~~~~~~~~l~sg~~  182 (326)
                                                           .|+....                ..+.+++.++.|++.+.|..
T Consensus       389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S  468 (910)
T KOG1539|consen  389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS  468 (910)
T ss_pred             chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence                                                 2222110                12557777777777777777


Q ss_pred             CCeEEEEECCCcee--ee-----------e--ecCC--------------------CCCCCCcCCCCceeeeEEeecCCC
Q 020454          183 GVEVNVWDLDKCEK--IW-----------T--AKPP--------------------PKNSLGIFTPTWFTSAAFLSIDDH  227 (326)
Q Consensus       183 d~~i~iwd~~~~~~--~~-----------~--~~~~--------------------~~~~~~~~~~~~v~~~~~~p~~~~  227 (326)
                      .|.|-+|+++++..  .+           -  +.+.                    ..-.-.++....++.+.++..  .
T Consensus       469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~--s  546 (910)
T KOG1539|consen  469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV--S  546 (910)
T ss_pred             CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeeh--h
Confidence            77888887776510  00           0  0000                    000001122234556666653  3


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (326)
Q Consensus       228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  307 (326)
                      .+++.+..|=.|+++|..+. +.++.|.+|...|++++|||||++|++++.|++|++||+.++.++-.+.  ...+..++
T Consensus       547 ~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sl  623 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSL  623 (910)
T ss_pred             hhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--cCCcceee
Confidence            38888999999999999986 6789999999999999999999999999999999999999999998777  37899999


Q ss_pred             EECCCCCEEEEeccCcc
Q 020454          308 ARHPTLPIIASCGFLEA  324 (326)
Q Consensus       308 ~~~p~~~~l~s~s~D~~  324 (326)
                      .|+|++.+|||...|+.
T Consensus       624 s~SPngD~LAT~Hvd~~  640 (910)
T KOG1539|consen  624 SFSPNGDFLATVHVDQN  640 (910)
T ss_pred             EECCCCCEEEEEEecCc
Confidence            99999999999988853

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=178.41  Aligned_cols=235  Identities=15%  Similarity=0.230  Sum_probs=197.2

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~  140 (326)
                      .+++++||++|+.||.|.+||..+|++.+.++.-..+....++.+|.++.+..        +...+++|+.||.|++|.+
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--------DsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--------DSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--------cHHHhhccCcCCcEEEEEE
Confidence            35677799999999999999999999887776544444446778999999766        6779999999999999998


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      ....        .++.++-.+...|+|+.|+.++..+++++.|.+++|.-+.+++.+..+++|.         .+|+...
T Consensus       293 ~tG~--------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---------Syvn~a~  355 (508)
T KOG0275|consen  293 ETGQ--------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---------SYVNEAT  355 (508)
T ss_pred             ecch--------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc---------ccccceE
Confidence            7755        6777887788999999999999999999999999999999999999988876         6788889


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--cCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      |.+  +|+.+++++.||+|++|+.++. .++.+|+.  .+.+|.++-.-|. ...++++...++|+|.++. |+.+..|.
T Consensus       356 ft~--dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfs  431 (508)
T KOG0275|consen  356 FTD--DGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFS  431 (508)
T ss_pred             EcC--CCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeec
Confidence            987  7779999999999999999987 56777763  4568888887775 5688888999999999985 78888776


Q ss_pred             ce--ecceEEEEEECCCCCEEEEeccCcc
Q 020454          298 GK--CSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       298 ~~--~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      ..  ..+...+...+|.|.++...+.|+.
T Consensus       432 SGkREgGdFi~~~lSpkGewiYcigED~v  460 (508)
T KOG0275|consen  432 SGKREGGDFINAILSPKGEWIYCIGEDGV  460 (508)
T ss_pred             cCCccCCceEEEEecCCCcEEEEEccCcE
Confidence            32  1345667778999999999999974

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=3.8e-25  Score=187.60  Aligned_cols=269  Identities=13%  Similarity=0.115  Sum_probs=207.9

Q ss_pred             cCcccEEEEEecCC--cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCC
Q 020454           21 DSLGLIKVIEARGE--HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG   98 (326)
Q Consensus        21 ~~~G~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~   98 (326)
                      -.+..+..+.++..  ....+.....+.-..+..-+.++++..+..   ++....+++|++|+..+.+.+.++.+     
T Consensus       341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~---~~~Sga~~SikiWn~~t~kciRTi~~-----  412 (888)
T KOG0306|consen  341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI---LLASGAGESIKIWNRDTLKCIRTITC-----  412 (888)
T ss_pred             eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce---eeeecCCCcEEEEEccCcceeEEecc-----
Confidence            55667777776652  111112222333345555566777754443   55566679999999999999888876     


Q ss_pred             CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (326)
Q Consensus        99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  178 (326)
                           +.+.+..+.+        .+.+++.|..+|.+.++|+.....     -.+++    .|.+.|.+++..|+++.++
T Consensus       413 -----~y~l~~~Fvp--------gd~~Iv~G~k~Gel~vfdlaS~~l-----~Eti~----AHdgaIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  413 -----GYILASKFVP--------GDRYIVLGTKNGELQVFDLASASL-----VETIR----AHDGAIWSISLSPDNKGFV  470 (888)
T ss_pred             -----ccEEEEEecC--------CCceEEEeccCCceEEEEeehhhh-----hhhhh----ccccceeeeeecCCCCceE
Confidence                 5777777766        678999999999999999865331     12222    4578899999999999999


Q ss_pred             EecCCCeEEEEECCCce-----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          179 FGGKGVEVNVWDLDKCE-----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       179 sg~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +|+.|.+|++||..-..     ....++-+....  +.-+..|.+++++|  ++++|+++=-|.+|++|-+.+. +...+
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt--Lel~ddvL~v~~Sp--dgk~LaVsLLdnTVkVyflDtl-KFfls  545 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT--LELEDDVLCVSVSP--DGKLLAVSLLDNTVKVYFLDTL-KFFLS  545 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccceeeeeccceE--EeccccEEEEEEcC--CCcEEEEEeccCeEEEEEecce-eeeee
Confidence            99999999999975211     111122222122  33456789999998  7889999999999999999987 55778


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.+|.-||.++.++||++.+++|+.|.+|++|-+.-|.+.+.+-+| .+.|.++.|.|....++|||.|+.+
T Consensus       546 LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P~~~~FFt~gKD~kv  616 (888)
T KOG0306|consen  546 LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLPKTHLFFTCGKDGKV  616 (888)
T ss_pred             ecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcccceeEEEecCcceE
Confidence            8899999999999999999999999999999999999999999998 9999999999999999999999865

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=2.7e-24  Score=186.71  Aligned_cols=259  Identities=12%  Similarity=0.094  Sum_probs=172.3

Q ss_pred             ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-eeeecccCCCC
Q 020454           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSG   98 (326)
Q Consensus        20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~   98 (326)
                      |+..|.+++|+....     .....+.  .+...+..+.|... .+.+|++|+.||+|+|||+.++.. ...+.. ....
T Consensus        50 GG~~gvI~L~~~~r~-----~~v~~L~--gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~  120 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-----PPVIKLK--GHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQCI  120 (568)
T ss_pred             CCceeEEEeeecCCC-----ceEEEEc--CCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCcccccccc-ceEE
Confidence            556777888876543     2222333  34455666666432 245899999999999999975432 111000 0000


Q ss_pred             CCCCCCCeeeeecccccccccCCCCc-eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE
Q 020454           99 AQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (326)
Q Consensus        99 ~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  177 (326)
                      ...|...|.++.+.+        ... .+++++.|+.|++||+....        .+..+  .+...|.+++|+|+|.+|
T Consensus       121 L~gH~~~V~sVaf~P--------~g~~iLaSgS~DgtIrIWDl~tg~--------~~~~i--~~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        121 LKGHKKKISIIDWNP--------MNYYIMCSSGFDSFVNIWDIENEK--------RAFQI--NMPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             eecCCCcEEEEEECC--------CCCeEEEEEeCCCeEEEEECCCCc--------EEEEE--ecCCcEEEEEECCCCCEE
Confidence            125667898888755        333 45688999999999987543        22222  235689999999999999


Q ss_pred             EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC----eEEEEeCCCCCCceeE
Q 020454          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQRRPVMS  253 (326)
Q Consensus       178 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~  253 (326)
                      ++++.|+.|+|||+++++.+..+..|......    ..+....|++  ++.+|++++.|+    +|+|||++....++..
T Consensus       183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s----~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~  256 (568)
T PTZ00420        183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT----KNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNTTSALVT  256 (568)
T ss_pred             EEEecCCEEEEEECCCCcEEEEEecccCCcee----EEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence            99999999999999999888877776532110    1112223444  455888877664    7999999965567766


Q ss_pred             EeecC--CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE--EEEcceecceEEEEEECCCC
Q 020454          254 FDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       254 ~~~~~--~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~~p~~  313 (326)
                      +..+.  +.+...-..+++.++++|..|+.|++|++..+...  ..+. + ..++.+++|.|..
T Consensus       257 ~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s-~~p~~g~~f~Pkr  318 (568)
T PTZ00420        257 MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-S-CSPFRSFGFLPKQ  318 (568)
T ss_pred             EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-c-CCCccceEEcccc
Confidence            54432  33333333455888999999999999999877532  2233 3 6789999999964

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=9.5e-26  Score=172.96  Aligned_cols=279  Identities=14%  Similarity=0.159  Sum_probs=209.6

Q ss_pred             CCeeeeeecCcccEEEEEecCC-------------cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEE
Q 020454           13 PPLRALTFDSLGLIKVIEARGE-------------HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i   79 (326)
                      ..+.++||+.|-.||+.|++.-             .....-++.++.++......+    ...+.+.+|++|+.|++|++
T Consensus       123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l----~FHPre~ILiS~srD~tvKl  198 (430)
T KOG0640|consen  123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL----DFHPRETILISGSRDNTVKL  198 (430)
T ss_pred             CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce----eecchhheEEeccCCCeEEE
Confidence            3388999999999999998721             001112344444444444433    23455668999999999999


Q ss_pred             EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      ||......++.++.+      .+..++.++.+.+        .+.++++++.-..+++||++..+......-      +-
T Consensus       199 FDfsK~saKrA~K~~------qd~~~vrsiSfHP--------sGefllvgTdHp~~rlYdv~T~QcfvsanP------d~  258 (430)
T KOG0640|consen  199 FDFSKTSAKRAFKVF------QDTEPVRSISFHP--------SGEFLLVGTDHPTLRLYDVNTYQCFVSANP------DD  258 (430)
T ss_pred             EecccHHHHHHHHHh------hccceeeeEeecC--------CCceEEEecCCCceeEEeccceeEeeecCc------cc
Confidence            999876666666654      3447899898766        678999999999999999987654221110      11


Q ss_pred             cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (326)
Q Consensus       160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v  239 (326)
                      .+.+.|+++.+++.+++.++|++||.|+|||--+++++..+.+....       ..|.+..|..  +++++++.+.|..|
T Consensus       259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-------sevcSa~Ftk--n~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-------SEVCSAVFTK--NGKYILSSGKDSTV  329 (430)
T ss_pred             ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-------ceeeeEEEcc--CCeEEeecCCccee
Confidence            23567999999999999999999999999999999988776553322       3477888875  78899999999999


Q ss_pred             EEEeCCCCCCceeEEeec-----CCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEc-ceecceEEEEEECCC
Q 020454          240 RLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPT  312 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~-----~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~  312 (326)
                      ++|.+.++ +++..+.+.     ...-+...|+....|++.-++ .+.+.-||.++...+..+. +| .+.++.+.-+|.
T Consensus       330 kLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~  407 (430)
T KOG0640|consen  330 KLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPV  407 (430)
T ss_pred             eeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCC
Confidence            99999988 677777653     112344467777778875554 5789999999987766665 56 999999999999


Q ss_pred             CCEEEEeccCccCC
Q 020454          313 LPIIASCGFLEAAS  326 (326)
Q Consensus       313 ~~~l~s~s~D~~~~  326 (326)
                      ++.+.+||.|..|+
T Consensus       408 ~p~FmTcsdD~raR  421 (430)
T KOG0640|consen  408 EPAFMTCSDDFRAR  421 (430)
T ss_pred             CCceeeecccceee
Confidence            99999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.2e-25  Score=189.16  Aligned_cols=243  Identities=15%  Similarity=0.170  Sum_probs=181.6

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--------------------------------eee-----
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--------------------------------VAI-----   91 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--------------------------------~~~-----   91 (326)
                      .+...|.++-|.  ..++|||+|+.||.|+||.+...+..                                ...     
T Consensus       265 ah~gaIw~mKFS--~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~  342 (712)
T KOG0283|consen  265 AHKGAIWAMKFS--HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG  342 (712)
T ss_pred             ccCCcEEEEEeC--CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence            455566666664  56779999999999999988651100                                000     


Q ss_pred             ---c---------ccC---CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEE
Q 020454           92 ---S---------NAG---DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS  156 (326)
Q Consensus        92 ---~---------~~~---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~  156 (326)
                         .         .+.   .....+|.+.|..+.|         +..++|++.+.|.+|++|.+...+        .+++
T Consensus       343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW---------SKn~fLLSSSMDKTVRLWh~~~~~--------CL~~  405 (712)
T KOG0283|consen  343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW---------SKNNFLLSSSMDKTVRLWHPGRKE--------CLKV  405 (712)
T ss_pred             cCCccccCCCccccccccchhhhhccchhheeccc---------ccCCeeEeccccccEEeecCCCcc--------eeeE
Confidence               0         000   0011355666666765         356799999999999999977554        6777


Q ss_pred             EEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454          157 WNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (326)
Q Consensus       157 ~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~  235 (326)
                      |.  |..-|+|++|+|. .+||++|+.|+.|+||++...+.+.-..-+          .-|++++|.|  +|+..++|+.
T Consensus       406 F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy~P--dGk~avIGt~  471 (712)
T KOG0283|consen  406 FS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR----------DLITAVCYSP--DGKGAVIGTF  471 (712)
T ss_pred             Ee--cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----------hhheeEEecc--CCceEEEEEe
Confidence            76  5789999999994 599999999999999999888776543322          3499999999  5889999999


Q ss_pred             CCeEEEEeCCCCCCceeEEee--------cCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEcceecc-eEE
Q 020454          236 DHQVRLYDTSAQRRPVMSFDF--------RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIR  305 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~--------~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~  305 (326)
                      +|.+++|+.+.. +....+..        ....|+.+.|.|.. ..|++.+.|..|+|||.++..++.+|+|++.. .-.
T Consensus       472 ~G~C~fY~t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~  550 (712)
T KOG0283|consen  472 NGYCRFYDTEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQI  550 (712)
T ss_pred             ccEEEEEEccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcce
Confidence            999999999865 44443332        12379999999753 45778899999999999999999999976332 345


Q ss_pred             EEEECCCCCEEEEeccCccC
Q 020454          306 SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ...|+.||++|+++|.|..+
T Consensus       551 ~Asfs~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  551 SASFSSDGKHIVSASEDSWV  570 (712)
T ss_pred             eeeEccCCCEEEEeecCceE
Confidence            67899999999999988753

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.9e-26  Score=188.46  Aligned_cols=277  Identities=16%  Similarity=0.193  Sum_probs=195.5

Q ss_pred             Cee-eeeecCcccEEEEEecCCcCCCcce-eeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eee
Q 020454           14 PLR-ALTFDSLGLIKVIEARGEHGGVPKV-VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRV   89 (326)
Q Consensus        14 ~~~-l~~~~~~G~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~   89 (326)
                      .-| |.||+.||.|++|+......+.... ..++.  .+..=+-.+...  ..++.|++++.|-+|++|+...+.  .+.
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme--~HsDWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~c~s  111 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME--HHSDWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTFCMS  111 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhh--hhHhHHhhHHhh--cCCCceEEecCCceEEEeecccCcchhHh
Confidence            356 9999999999999987541110000 11111  111111011111  233469999999999999997653  333


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-cccccc-ceEEEEEccCCCceEE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-SAESSC-STVKSWNVCASGTIAF  167 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-~~~~~~-~~~~~~~~~~~~~v~~  167 (326)
                      .+.        .|.+.|.+++...+       +...+++|+-|+.|++||++.... ..++.+ -+..-.-..+...|++
T Consensus       112 tir--------~H~DYVkcla~~ak-------~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen  112 TIR--------THKDYVKCLAYIAK-------NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             hhh--------cccchheeeeeccc-------CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            333        67789999997432       457899999999999999986432 111110 0111111134568999


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      ++.++.+..|++|+.++.|++||.++++.+..+++|..+         |..+..++  +|..+++++.||+|++||+..+
T Consensus       177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN---------Vr~ll~~d--DGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN---------VRVLLVND--DGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             eecCCcceEEEecCcccceEEeccccccceeeeeccccc---------eEEEEEcC--CCCeEeecCCCceEEeeecccc
Confidence            999999999999999999999999999999999998744         66777765  7889999999999999999976


Q ss_pred             CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                       +++.++..|...+.++..+|+-.++++|+.||.|..=|+++.. ....++ . ..+|..+..+...+-+-++..|+
T Consensus       246 -rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~-daPv~~l~~~~~~~~~WvtTtds  319 (735)
T KOG0308|consen  246 -RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-E-DAPVLKLHLHEHDNSVWVTTTDS  319 (735)
T ss_pred             -ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-C-CCchhhhhhccccCCceeeeccc
Confidence             7899999999999999999999999999999999999999843 333333 2 45666666663333234444444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=180.63  Aligned_cols=238  Identities=16%  Similarity=0.225  Sum_probs=180.9

Q ss_pred             CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (326)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~  127 (326)
                      +.+...+.+++|.+....+ +|+.+. -.+.||+..+....+.+..+.        ..+.+..+-.        ++..++
T Consensus        23 ~ke~~~vssl~fsp~~P~d-~aVt~S-~rvqly~~~~~~~~k~~srFk--------~~v~s~~fR~--------DG~Lla   84 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYD-FAVTSS-VRVQLYSSVTRSVRKTFSRFK--------DVVYSVDFRS--------DGRLLA   84 (487)
T ss_pred             ccccCcceeEecCCCCCCc-eEEecc-cEEEEEecchhhhhhhHHhhc--------cceeEEEeec--------CCeEEE
Confidence            3455566677776544443 444433 579999998777766665442        4566555432        566788


Q ss_pred             EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                      +|.+.|.|+++|+....        .++.++ .+..++..+.|+|++ ..|++|+.|+.+++||+.+......+.+|.  
T Consensus        85 aGD~sG~V~vfD~k~r~--------iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht--  153 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKSRV--------ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT--  153 (487)
T ss_pred             ccCCcCcEEEeccccHH--------HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--
Confidence            88899999999965422        233333 346789999999976 677888899999999999888655666655  


Q ss_pred             CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                             .+|.+.+|+|.++ .++++|+.||+|++||+|.....+.++ .|..+|..+.+-|.|..|++++.. .|++||
T Consensus       154 -------DYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWD  223 (487)
T KOG0310|consen  154 -------DYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWD  223 (487)
T ss_pred             -------ceeEeeccccCCC-eEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEE
Confidence                   7899999999754 499999999999999999764455555 577899999999999999986654 899999


Q ss_pred             CCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       287 ~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +-+| +.+..+..| ...|+||.+..++..|+|+|.||.+
T Consensus       224 l~~G~qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~V  262 (487)
T KOG0310|consen  224 LTTGGQLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHV  262 (487)
T ss_pred             ecCCceehhhhhcc-cceEEEEEeecCCceEeecccccce
Confidence            9965 455555557 9999999999999999999999975

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.8e-24  Score=186.62  Aligned_cols=226  Identities=12%  Similarity=0.053  Sum_probs=162.3

Q ss_pred             EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (326)
Q Consensus        71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~  150 (326)
                      |+.++.|++|+......+..+.        .|.++|.++.+.+.       .+..|++++.||.|++|++..........
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~--------gH~~~V~~lafsP~-------~~~lLASgS~DgtIrIWDi~t~~~~~~~i  114 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLK--------GHTSSILDLQFNPC-------FSEILASGSEDLTIRVWEIPHNDESVKEI  114 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEc--------CCCCCEEEEEEcCC-------CCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence            6678899999986554433333        66789999997541       24689999999999999987532110000


Q ss_pred             cceEEEEEccCCCceEEEEEcCCCCE-EEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          151 CSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                      ...+..+. .+...|.+++|+|++.. |++++.|++|+|||+++++.+..+..          ...|.+++|+|  ++.+
T Consensus       115 ~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~----------~~~V~Slswsp--dG~l  181 (568)
T PTZ00420        115 KDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM----------PKKLSSLKWNI--KGNL  181 (568)
T ss_pred             ccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec----------CCcEEEEEECC--CCCE
Confidence            11222232 35678999999998864 57999999999999998887665431          13488999998  5679


Q ss_pred             EEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-----EEecCCCCeEEEEcCCC----cEEEEECCC-CeEEEEEcce
Q 020454          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-----VAEEPDSFNIYIGNGSG----DLASVDIRT-GKLLGCFIGK  299 (326)
Q Consensus       230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-----v~~s~~~~~l~~g~~dg----~v~iwd~~~-~~~~~~~~~~  299 (326)
                      |++++.|+.|+|||++++ ..+.++..|.+.+..     ..|++++.+|++++.|+    .|+|||+++ ++++..+..+
T Consensus       182 Lat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld  260 (568)
T PTZ00420        182 LSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID  260 (568)
T ss_pred             EEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence            999999999999999987 667888888775433     23568889999877664    799999995 5666555422


Q ss_pred             e-cceEEEEEECCCCCEEEEeccCccC
Q 020454          300 C-SGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       300 ~-~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      . .+.+......+++.++++|+.|+.+
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeE
Confidence            0 2333334445568899999999875

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=6.6e-24  Score=183.30  Aligned_cols=237  Identities=11%  Similarity=0.048  Sum_probs=167.6

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccC-----CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAG-----DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      ++++..+.....|+...+..+..+....     ++....|.+.|.++.+.+.       ++..|++++.|+.|++|++..
T Consensus        35 ~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-------d~~~LaSgS~DgtIkIWdi~~  107 (493)
T PTZ00421         35 TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-------DPQKLFTASEDGTIMGWGIPE  107 (493)
T ss_pred             cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-------CCCEEEEEeCCCEEEEEecCC
Confidence            5666666666666653332221111100     0112367789999987541       345899999999999999875


Q ss_pred             cccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                      .... ......+..+. .+...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+..|.         ..|.+++|
T Consensus       108 ~~~~-~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~---------~~V~sla~  176 (493)
T PTZ00421        108 EGLT-QNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS---------DQITSLEW  176 (493)
T ss_pred             Cccc-cccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC---------CceEEEEE
Confidence            4211 01112333333 356789999999986 799999999999999999988877766554         56889999


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc-eEEEEecCCCCeEEEEc----CCCcEEEEECCCCe-EEEE
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN----GSGDLASVDIRTGK-LLGC  295 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-i~~v~~s~~~~~l~~g~----~dg~v~iwd~~~~~-~~~~  295 (326)
                      +|  ++.+|++++.|++|++||++++ +.+.++..|... ...+.|.+++..+++++    .|+.|++||+++.. ++..
T Consensus       177 sp--dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        177 NL--DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             EC--CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            98  5679999999999999999987 567788777654 45678999887777543    47899999998754 4444


Q ss_pred             EcceecceEEEEEECCCCCEEEEecc-CccC
Q 020454          296 FIGKCSGSIRSIARHPTLPIIASCGF-LEAA  325 (326)
Q Consensus       296 ~~~~~~~~v~~l~~~p~~~~l~s~s~-D~~~  325 (326)
                      ...+....+....|++++.+|+++|. |+.+
T Consensus       254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             eccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence            44332445666789999999998884 8765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.3e-24  Score=182.84  Aligned_cols=258  Identities=12%  Similarity=0.069  Sum_probs=197.7

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE-EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL-AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      +...+++++.||.+|||+-..+  +.... ..+.  .+...+. ..|+.. .+...|++|+.|.+|.+|...+.+....+
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~--~~l~~-~~~~--~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~L   97 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGK--QYLET-HAFE--GPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTL   97 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCc--ccccc-eecc--cCcceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhh
Confidence            3467999999999999997655  11111 0111  1222222 255554 34446999999999999999887776666


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      .        +|+..|++++..+         +..+++++-|.++++|.......          .|. .|...|..+..-
T Consensus        98 k--------gH~snVC~ls~~~---------~~~~iSgSWD~TakvW~~~~l~~----------~l~-gH~asVWAv~~l  149 (745)
T KOG0301|consen   98 K--------GHKSNVCSLSIGE---------DGTLISGSWDSTAKVWRIGELVY----------SLQ-GHTASVWAVASL  149 (745)
T ss_pred             h--------ccccceeeeecCC---------cCceEecccccceEEecchhhhc----------ccC-Ccchheeeeeec
Confidence            6        7778999998644         45699999999999998765321          122 456788888888


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      |++ .++||+.|.+|++|.-  ++.+..+++|.         ..|.++++.|.  + .|++++.||.|++|++. + ..+
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt---------D~VRgL~vl~~--~-~flScsNDg~Ir~w~~~-g-e~l  212 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT---------DCVRGLAVLDD--S-HFLSCSNDGSIRLWDLD-G-EVL  212 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--Cchhhhhccch---------hheeeeEEecC--C-CeEeecCCceEEEEecc-C-cee
Confidence            887 6779999999999986  56666666655         55889999873  2 79999999999999995 4 468


Q ss_pred             eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       252 ~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..+.+|...+++++..+++..|+++++|++++||+..  ++.+.+.-+ ...|+++.+-++|. |++||.||.+
T Consensus       213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~V  282 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRV  282 (745)
T ss_pred             eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceE
Confidence            8999999999999988888899999999999999976  777777744 66899999988886 5677889865

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.3e-25  Score=187.61  Aligned_cols=204  Identities=16%  Similarity=0.140  Sum_probs=158.3

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      -++.++|.   ...+|++++.|.+||||++...+.+..|.         |.+-|+++++.+.       +++++++|+-|
T Consensus       371 DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~---------HndfVTcVaFnPv-------DDryFiSGSLD  431 (712)
T KOG0283|consen  371 DILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKVFS---------HNDFVTCVAFNPV-------DDRYFISGSLD  431 (712)
T ss_pred             hheecccc---cCCeeEeccccccEEeecCCCcceeeEEe---------cCCeeEEEEeccc-------CCCcEeecccc
Confidence            34445553   33479999999999999998888777765         3478999997663       68899999999


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      |+++||++...         .+..|.-- ..-|+++.+.|+|++.++|+.+|.+++|+....+.....+-.........+
T Consensus       432 ~KvRiWsI~d~---------~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  432 GKVRLWSISDK---------KVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             cceEEeecCcC---------eeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999997643         56667633 478999999999999999999999999999987765543322222212223


Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      . .|+++.|.|... ..+++.+.|..|||||.+.. ..+..|++.   .+++.+ .|+.||++|+++++|..|++|+...
T Consensus       502 ~-rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~A-sfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  502 K-RITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISA-SFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             c-eeeeeEecCCCC-CeEEEecCCCceEEEeccch-hhhhhhcccccCCcceee-eEccCCCEEEEeecCceEEEEeCCC
Confidence            3 799999999744 37888889999999999865 566777643   335555 8999999999999999999999743

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7.4e-24  Score=161.87  Aligned_cols=264  Identities=13%  Similarity=0.125  Sum_probs=194.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .-+++++=||.||+|+++..-.-..+.     .......++.++|.++.  ..+++|+.|+.+++||+.+++. ..+.  
T Consensus        41 ~~~~A~SWD~tVR~wevq~~g~~~~ka-----~~~~~~PvL~v~Wsddg--skVf~g~~Dk~~k~wDL~S~Q~-~~v~--  110 (347)
T KOG0647|consen   41 NLLAAGSWDGTVRIWEVQNSGQLVPKA-----QQSHDGPVLDVCWSDDG--SKVFSGGCDKQAKLWDLASGQV-SQVA--  110 (347)
T ss_pred             ceEEecccCCceEEEEEecCCcccchh-----hhccCCCeEEEEEccCC--ceEEeeccCCceEEEEccCCCe-eeee--
Confidence            556789999999999998630111122     23455566777776554  4799999999999999998865 3333  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|+++|..+++++..      ....|++++-|.+|++||.+...        .+...++  ++.+++++.-  .
T Consensus       111 ------~Hd~pvkt~~wv~~~------~~~cl~TGSWDKTlKfWD~R~~~--------pv~t~~L--PeRvYa~Dv~--~  166 (347)
T KOG0647|consen  111 ------AHDAPVKTCHWVPGM------NYQCLVTGSWDKTLKFWDTRSSN--------PVATLQL--PERVYAADVL--Y  166 (347)
T ss_pred             ------ecccceeEEEEecCC------CcceeEecccccceeecccCCCC--------eeeeeec--cceeeehhcc--C
Confidence                  677899999987733      23478999999999999987544        3333333  5677777664  4


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMS  253 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~  253 (326)
                      .+++++..+..|.+|+++++...++....+..       -.+.+++..++.+  ..+.|+-+|++-+..+.... ..-.+
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk-------~Q~R~va~f~d~~--~~alGsiEGrv~iq~id~~~~~~nFt  237 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIESPLK-------WQTRCVACFQDKD--GFALGSIEGRVAIQYIDDPNPKDNFT  237 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhcCccc-------ceeeEEEEEecCC--ceEeeeecceEEEEecCCCCccCcee
Confidence            67888889999999999876654443222211       1367888887555  45999999999998877531 12234


Q ss_pred             EeecC---------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe-ccC
Q 020454          254 FDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GFL  322 (326)
Q Consensus       254 ~~~~~---------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~-s~D  322 (326)
                      |+-|.         ..|++|+|+|.-..|++.+.||++.+||-.....+...+.| ..+|++..|+.+|.++|-+ |.|
T Consensus       238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEEeecc
Confidence            44443         36889999999889999999999999999888888888887 9999999999999977654 444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.5e-24  Score=171.57  Aligned_cols=260  Identities=17%  Similarity=0.184  Sum_probs=194.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeee-------ccC-----CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVER-------WGD-----PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~   82 (326)
                      -+.++++.+|.|.=|++.++. ....+..+       +..     ..+...+++  ..-+++++||++|..|..|.||+.
T Consensus       155 ~~~fsask~g~i~kw~v~tgk-~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~--~avS~Dgkylatgg~d~~v~Iw~~  231 (479)
T KOG0299|consen  155 KRVFSASKDGTILKWDVLTGK-KDRYIIERDEVLKSHGNPLKESRKGHVKEILT--LAVSSDGKYLATGGRDRHVQIWDC  231 (479)
T ss_pred             cceeecCCCcceeeeehhcCc-ccccccccchhhhhccCCCCcccccccceeEE--EEEcCCCcEEEecCCCceEEEecC
Confidence            488999999999999988771 11001101       111     122233333  344567779999999999999999


Q ss_pred             cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      .+.+.+..+.        .|.+.|.++++..        ....+++++.|..+++|+++......        . -..|+
T Consensus       232 ~t~ehv~~~~--------ghr~~V~~L~fr~--------gt~~lys~s~Drsvkvw~~~~~s~ve--------t-lyGHq  286 (479)
T KOG0299|consen  232 DTLEHVKVFK--------GHRGAVSSLAFRK--------GTSELYSASADRSVKVWSIDQLSYVE--------T-LYGHQ  286 (479)
T ss_pred             cccchhhccc--------ccccceeeeeeec--------CccceeeeecCCceEEEehhHhHHHH--------H-HhCCc
Confidence            9888777655        6779999999765        55689999999999999988654321        1 12456


Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      ..|..+.....++.+-+|+.|.++++|++.... .++...           ...+-+++|..   ...|++|+.+|.|.+
T Consensus       287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~-----------~~sidcv~~In---~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG-----------EGSIDCVAFIN---DEHFVSGSDNGSIAL  352 (479)
T ss_pred             cceeeechhcccceEEeccccceeEEEeccccceeeeeCC-----------CCCeeeEEEec---ccceeeccCCceEEE
Confidence            788888888778888888999999999995432 333322           13477888884   338999999999999


Q ss_pred             EeCCCCCCceeEEee------------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----eEEEEEcceecceEE
Q 020454          242 YDTSAQRRPVMSFDF------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIR  305 (326)
Q Consensus       242 wd~~~~~~~~~~~~~------------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~  305 (326)
                      |++... +|+.+...            +..+|++++..|...++++|+.+|.|++|-+..+    .+++.++  ..+-|+
T Consensus       353 Ws~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVN  429 (479)
T KOG0299|consen  353 WSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVN  429 (479)
T ss_pred             eeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEE
Confidence            999866 66665541            1238999999999999999999999999998877    5566666  488999


Q ss_pred             EEEECCCCCEEEEe
Q 020454          306 SIARHPTLPIIASC  319 (326)
Q Consensus       306 ~l~~~p~~~~l~s~  319 (326)
                      +|+|++++..|++|
T Consensus       430 sl~f~~sgk~ivag  443 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAG  443 (479)
T ss_pred             EEEEccCCCEEEEe
Confidence            99999999966555

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=3.4e-24  Score=167.61  Aligned_cols=234  Identities=14%  Similarity=0.191  Sum_probs=182.2

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+++++..+  +.+++++|+.|..-.+|++.+++...++.        .|...|+++.+..        ++.+|+++
T Consensus        63 H~~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~elt--------gHKDSVt~~~Fsh--------dgtlLATG  124 (399)
T KOG0296|consen   63 HTDSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAGELT--------GHKDSVTCCSFSH--------DGTLLATG  124 (399)
T ss_pred             cCCceEEEEeCC--CCceEEecCCCceEEEEEccCCcceeEec--------CCCCceEEEEEcc--------CceEEEec
Confidence            444555666554  66799999999999999999999766655        6778999998765        67789999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      ..+|.|++|.......          .|.+ .....|.-|.|||.+.+|+.|+.||.+-+|.+.++.....+.+|.    
T Consensus       125 dmsG~v~v~~~stg~~----------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~----  190 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGE----------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN----  190 (399)
T ss_pred             CCCccEEEEEcccCce----------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC----
Confidence            9999999999765431          2222 235678899999999999999999999999999876666667755    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--------------------------------
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--------------------------------  256 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------------------------  256 (326)
                           ..+++-.|.|  +|++++++..||+|++||+.++ +|+..+..                                
T Consensus       191 -----~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~  262 (399)
T KOG0296|consen  191 -----SPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN  262 (399)
T ss_pred             -----CCcccccccC--CCceEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence                 4467778998  6889999999999999999987 54444431                                


Q ss_pred             -------------------cCCceEEEE---ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454          257 -------------------RETPIKAVA---EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       257 -------------------~~~~i~~v~---~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                                         ++..+.+|.   ++..=.+.|+|+.||+|.|||+...++.+.+. | ..+|..+.|-+ ..
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~l~w~~-t~  339 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTKLKWLN-TD  339 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEEEEEcC-cc
Confidence                               001122233   33334567899999999999999888777776 4 88999999998 78


Q ss_pred             EEEEeccCccCC
Q 020454          315 IIASCGFLEAAS  326 (326)
Q Consensus       315 ~l~s~s~D~~~~  326 (326)
                      +|++++.||.++
T Consensus       340 ~l~t~c~~g~v~  351 (399)
T KOG0296|consen  340 YLLTACANGKVR  351 (399)
T ss_pred             hheeeccCceEE
Confidence            999999999764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=2.8e-25  Score=179.47  Aligned_cols=229  Identities=10%  Similarity=0.109  Sum_probs=179.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .++++++.|+.||+||++++     +...++..... ..  ++.+..+. .+.+++|..|+.|+.||+++++++.++.  
T Consensus       271 ~~fLS~sfD~~lKlwDtETG-----~~~~~f~~~~~-~~--cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd--  339 (503)
T KOG0282|consen  271 TSFLSASFDRFLKLWDTETG-----QVLSRFHLDKV-PT--CVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYD--  339 (503)
T ss_pred             Ceeeeeecceeeeeeccccc-----eEEEEEecCCC-ce--eeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHH--
Confidence            68999999999999999999     67666654322 22  23333222 4689999999999999999999988887  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|-+.|..+.+++        .+..+++.++|+.+++|+....-.        ++...-...-.+.++..+|++
T Consensus       340 ------~hLg~i~~i~F~~--------~g~rFissSDdks~riWe~~~~v~--------ik~i~~~~~hsmP~~~~~P~~  397 (503)
T KOG0282|consen  340 ------RHLGAILDITFVD--------EGRRFISSSDDKSVRIWENRIPVP--------IKNIADPEMHTMPCLTLHPNG  397 (503)
T ss_pred             ------hhhhheeeeEEcc--------CCceEeeeccCccEEEEEcCCCcc--------chhhcchhhccCcceecCCCC
Confidence                  4457899899888        678999999999999999765431        111111122357789999999


Q ss_pred             CEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      ++++.-+.|+.|.+|.+...-.   ...+++|.       ...+-..+.|+|  +|.+|++|..||.+.+||.++. +.+
T Consensus       398 ~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-------vaGys~~v~fSp--DG~~l~SGdsdG~v~~wdwkt~-kl~  467 (503)
T KOG0282|consen  398 KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-------VAGYSCQVDFSP--DGRTLCSGDSDGKVNFWDWKTT-KLV  467 (503)
T ss_pred             CeehhhccCceEEEEecccccccCHhhhhccee-------ccCceeeEEEcC--CCCeEEeecCCccEEEeechhh-hhh
Confidence            9999999999999999764221   22233333       335566889998  7789999999999999999987 568


Q ss_pred             eEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEE
Q 020454          252 MSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVD  286 (326)
Q Consensus       252 ~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd  286 (326)
                      ..++.|+.++..+.|+|. ...+|+++.||.|++||
T Consensus       468 ~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  468 SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            899999999999999997 46888999999999996

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=3.9e-23  Score=168.19  Aligned_cols=265  Identities=14%  Similarity=0.148  Sum_probs=196.3

Q ss_pred             eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCC
Q 020454           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS   97 (326)
Q Consensus        18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~   97 (326)
                      +..--.|.+..|+.+++  ...+....|..++. ..+++++|....+   +++|.++|.|.||+..+.+..+...     
T Consensus       216 iit~Gk~H~~Fw~~~~~--~l~k~~~~fek~ek-k~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~-----  284 (626)
T KOG2106|consen  216 IITCGKGHLYFWTLRGG--SLVKRQGIFEKREK-KFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVH-----  284 (626)
T ss_pred             EEEeCCceEEEEEccCC--ceEEEeeccccccc-eEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEee-----
Confidence            33344688999998877  33333334444444 7888888877666   9999999999999997777655554     


Q ss_pred             CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc---ccccccceEEEE-----------------
Q 020454           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVKSW-----------------  157 (326)
Q Consensus        98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---~~~~~~~~~~~~-----------------  157 (326)
                         .|++.|.+|....         ++.|++++.|..|..||-+....   .....-+.+|..                 
T Consensus       285 ---aH~ggv~~L~~lr---------~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL  352 (626)
T KOG2106|consen  285 ---AHDGGVFSLCMLR---------DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL  352 (626)
T ss_pred             ---ecCCceEEEEEec---------CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence               5567888888654         57899999999999999443221   001111222211                 


Q ss_pred             -----------EccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          158 -----------NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       158 -----------~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                                 ...+..+...++.+|+.+++++++.|+.+++|+  ..++++....          ...+.++.|+|.  
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~----------~d~~~~~~fhps--  418 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII----------EDPAECADFHPS--  418 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe----------cCceeEeeccCc--
Confidence                       112234577999999999999999999999999  5566655332          134668899994  


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-CeEEEEEcceecceEE
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIR  305 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~  305 (326)
                      + .++.|+..|...+.|..+. . +.++.....++++|+|+|+|.+||+|+.|+.|++|-+.. ++...++..++..+|+
T Consensus       419 g-~va~Gt~~G~w~V~d~e~~-~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it  495 (626)
T KOG2106|consen  419 G-VVAVGTATGRWFVLDTETQ-D-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT  495 (626)
T ss_pred             c-eEEEeeccceEEEEecccc-e-eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence            4 8999999999999999974 4 344444489999999999999999999999999999875 4455445444367999


Q ss_pred             EEEECCCCCEEEEeccC
Q 020454          306 SIARHPTLPIIASCGFL  322 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D  322 (326)
                      .|+|++|+++|.+-|.|
T Consensus       496 hLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  496 HLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             EeeecCCCceEEeccCc
Confidence            99999999999998876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=9.6e-24  Score=185.97  Aligned_cols=282  Identities=12%  Similarity=0.094  Sum_probs=203.4

Q ss_pred             eeeeeec--CcccEEEEEecCCc------CC-CcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-
Q 020454           15 LRALTFD--SLGLIKVIEARGEH------GG-VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-   84 (326)
Q Consensus        15 ~~l~~~~--~~G~i~vw~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-   84 (326)
                      .+++||+  .||.++||+...-.      .+ .++...+..++..  .+.  |.-+++++.+||+|+.|+.|.||+... 
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~--sv~--CVR~S~dG~~lAsGSDD~~v~iW~~~~~  101 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG--SVN--CVRFSPDGSYLASGSDDRLVMIWERAEI  101 (942)
T ss_pred             eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC--cee--EEEECCCCCeEeeccCcceEEEeeeccc
Confidence            7899999  89999999976431      01 2223223332333  322  234567788999999999999999862 


Q ss_pred             ---cce--------eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce
Q 020454           85 ---GDL--------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST  153 (326)
Q Consensus        85 ---~~~--------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~  153 (326)
                         ..+        .+..+...  ....|++.|..+.+.+        ++..+++++.|++|.+|+....+        .
T Consensus       102 ~~~~~fgs~g~~~~vE~wk~~~--~l~~H~~DV~Dv~Wsp--------~~~~lvS~s~DnsViiwn~~tF~--------~  163 (942)
T KOG0973|consen  102 GSGTVFGSTGGAKNVESWKVVS--ILRGHDSDVLDVNWSP--------DDSLLVSVSLDNSVIIWNAKTFE--------L  163 (942)
T ss_pred             CCcccccccccccccceeeEEE--EEecCCCccceeccCC--------CccEEEEecccceEEEEccccce--------e
Confidence               000        00000000  0125678888888766        67899999999999999966543        5


Q ss_pred             EEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE
Q 020454          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (326)
Q Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~  233 (326)
                      +++.+ .|...|-.+.|+|-|+|||+-+.|++|++|++.+-.....+..+..+..   -......+.|+|  +|++|++.
T Consensus       164 ~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~---~~T~f~RlSWSP--DG~~las~  237 (942)
T KOG0973|consen  164 LKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP---LTTFFLRLSWSP--DGHHLASP  237 (942)
T ss_pred             eeeee-cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC---CcceeeecccCC--CcCeecch
Confidence            55555 3567899999999999999999999999999776555555444433221   224678899999  77788886


Q ss_pred             eC----CCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-----CC------------eEEEEcCCCcEEEEECCCCeE
Q 020454          234 TN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----SF------------NIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       234 ~~----dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-----~~------------~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      ..    -..+.|.+-.+. ..-..+-+|..++.++.|+|.     ..            .+|+|+.|++|.||.....++
T Consensus       238 nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  238 NAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             hhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence            32    336788887655 445778899999999999972     11            567999999999999988888


Q ss_pred             EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          293 LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       293 ~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.....-....|..+.|+|||-.|+.||.||.+
T Consensus       317 l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV  349 (942)
T KOG0973|consen  317 LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTV  349 (942)
T ss_pred             hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeE
Confidence            765543236699999999999999999999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.1e-23  Score=160.90  Aligned_cols=233  Identities=18%  Similarity=0.170  Sum_probs=174.1

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      .+.++.|.+ ....++++|+-||+||+|+++. |.+.....       +.+++++.++.|..        ++.++++++.
T Consensus        29 sIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~Wsd--------dgskVf~g~~   92 (347)
T KOG0647|consen   29 SISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSD--------DGSKVFSGGC   92 (347)
T ss_pred             chheeEecc-ccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEcc--------CCceEEeecc
Confidence            333444544 3455788999999999999976 34433222       36779999999866        6789999999


Q ss_pred             CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC--EEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      |+.+++||+...+.      ..+    ..|..+|.++.|-+...  .|+||+.|.+|+.||.+...++.++.-       
T Consensus        93 Dk~~k~wDL~S~Q~------~~v----~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------  155 (347)
T KOG0647|consen   93 DKQAKLWDLASGQV------SQV----AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------  155 (347)
T ss_pred             CCceEEEEccCCCe------eee----eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------
Confidence            99999999876541      111    13567899999887664  899999999999999998888887543       


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                         |..++++...    ..+++++..++.|.+|+++......+..+ .-+..+++|+..++....+.|+-+|.+.|..+.
T Consensus       156 ---PeRvYa~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  156 ---PERVYAADVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             ---cceeeehhcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence               3445555443    22889999999999999986522111111 123468999999998888999999999999998


Q ss_pred             CC--eEEEEEccee--------cceEEEEEECCCCCEEEEeccCccC
Q 020454          289 TG--KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       289 ~~--~~~~~~~~~~--------~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+  +.-..|+.|.        --.|++|+|+|.-..|+|+|.||+-
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf  275 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF  275 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence            76  4445677772        1258899999998999999999974

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.7e-24  Score=156.97  Aligned_cols=243  Identities=16%  Similarity=0.151  Sum_probs=180.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .||+|++.|++|||++.+..  +..++.....  .++..+.-+.|.+...+.+||+++-||.|.||.-++++..+.... 
T Consensus        24 krlATcsSD~tVkIf~v~~n--~~s~ll~~L~--Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-   98 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIFEVRNN--GQSKLLAELT--GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-   98 (299)
T ss_pred             ceeeeecCCccEEEEEEcCC--CCceeeeEec--CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-
Confidence            68999999999999999876  3333444444  344456678888888999999999999999999988876554443 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  173 (326)
                           ..|+..+.++++.+++      .+-.|+.++.||.|.+.+++....-     ..-++ ...|...|+++.+.|. 
T Consensus        99 -----~~h~~SVNsV~waphe------ygl~LacasSDG~vsvl~~~~~g~w-----~t~ki-~~aH~~GvnsVswapa~  161 (299)
T KOG1332|consen   99 -----AAHSASVNSVAWAPHE------YGLLLACASSDGKVSVLTYDSSGGW-----TTSKI-VFAHEIGVNSVSWAPAS  161 (299)
T ss_pred             -----hhhcccceeecccccc------cceEEEEeeCCCcEEEEEEcCCCCc-----cchhh-hhccccccceeeecCcC
Confidence                 3677889988876644      4557888999999999998765211     11112 2245667888888884 


Q ss_pred             --C-----------CEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCcCCCCceeeeEEeecCC--CcEEEEEeCC
Q 020454          174 --E-----------KFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTND  236 (326)
Q Consensus       174 --~-----------~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~~~~~d  236 (326)
                        |           +.|++|+.|+.|+||+..+++-+.  .+..         |..||+.++|.|...  ...|+++++|
T Consensus       162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---------H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---------HKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---------cchhhhhhhhccccCCCceeeEEecCC
Confidence              3           569999999999999998763211  1333         448999999999632  2489999999


Q ss_pred             CeEEEEeCCCCCCce--eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          237 HQVRLYDTSAQRRPV--MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       237 g~v~iwd~~~~~~~~--~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      |+|.||-.+....+-  .-++.....+..+.||+.|+.|++++.|+.|.+|.-.
T Consensus       233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            999999877321211  1122345679999999999999999999999999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.4e-24  Score=176.92  Aligned_cols=254  Identities=16%  Similarity=0.136  Sum_probs=175.2

Q ss_pred             CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (326)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l  126 (326)
                      +.+...+.++.++.  .+-.|++|+.|-+|++||+..... ...++.+.+    .+...|..+.+..        .++.|
T Consensus       164 ~hgtk~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P----~E~h~i~sl~ys~--------Tg~~i  229 (641)
T KOG0772|consen  164 KHGTKIVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP----CETHQINSLQYSV--------TGDQI  229 (641)
T ss_pred             cCCceEEEEeeecC--CCceeeeccccceEEEEecccccccchhhhccCc----ccccccceeeecC--------CCCeE
Confidence            34556666666654  455899999999999999963321 122333222    3456788888765        67899


Q ss_pred             EEEecCCcEEEEEcccccccccc-ccceEEE-EEc-cCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee-eeeec
Q 020454          127 LTCTTKGKASMRSIEVTKVSAES-SCSTVKS-WNV-CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK-IWTAK  201 (326)
Q Consensus       127 ~~~~~~g~v~i~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~-~~~~~  201 (326)
                      ++.+...+.+++|-+........ .|..|+- .+. .|-..++|-.|||.. ..|++++.|++++|||+.+.+. +..++
T Consensus       230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence            99999999999996654322111 1222211 111 123358899999975 7788999999999999986542 22222


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-CCcee-EEeecCC--ceEEEEecCCCCeEEEEc
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVM-SFDFRET--PIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~-~~~~~~~--~i~~v~~s~~~~~l~~g~  277 (326)
                      ......    ....++.++|+|  ++++||+|+.||.|.+|+.+.. .++.. .-+.|..  .|++|+||++|++|++-+
T Consensus       310 ~k~~~g----~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  310 TKPAGG----KRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             eccCCC----cccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            211111    124688999998  6779999999999999997643 12333 3345655  899999999999999999


Q ss_pred             CCCcEEEEECCCC-eEEEEEcce-ecceEEEEEECCCCCEEEEecc
Q 020454          278 GSGDLASVDIRTG-KLLGCFIGK-CSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       278 ~dg~v~iwd~~~~-~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      .|+++++||+++. +++..+.+- ..-+-+..+|+|+.++|++|..
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            9999999999975 455544431 1335668899999999999863

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.9e-24  Score=171.20  Aligned_cols=256  Identities=17%  Similarity=0.155  Sum_probs=187.9

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCC--ceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeeecccCCCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSS--NCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSG   98 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~   98 (326)
                      +.+.+.+||++++     ....+|......  ....++      ...+++++.. -..|.+|.+..........      
T Consensus        16 d~~~~~~~dl~TG-----t~~~~ykg~~~a~~~sl~~l------~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------   78 (476)
T KOG0646|consen   16 DPINCIVWDLRTG-----TSLLQYKGSYLAQAASLTAL------NNEYLLSAQLKRPLLHVWEILKKDQVVQYI------   78 (476)
T ss_pred             CCcceeEEecCCC-----ceeEEecCcccccchhhhhh------chhheeeecccCccccccccCchhhhhhhc------
Confidence            4567899999988     444455543111  111111      1134555544 4679999986544333111      


Q ss_pred             CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (326)
Q Consensus        99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  178 (326)
                        .-.+++.+++..+        .+.++++++..|.+++|.+....        .+.+| ..|-..|+|+.|+-|+.+|+
T Consensus        79 --v~Pg~v~al~s~n--------~G~~l~ag~i~g~lYlWelssG~--------LL~v~-~aHYQ~ITcL~fs~dgs~ii  139 (476)
T KOG0646|consen   79 --VLPGPVHALASSN--------LGYFLLAGTISGNLYLWELSSGI--------LLNVL-SAHYQSITCLKFSDDGSHII  139 (476)
T ss_pred             --ccccceeeeecCC--------CceEEEeecccCcEEEEEecccc--------HHHHH-HhhccceeEEEEeCCCcEEE
Confidence              2227888888766        55677777799999999987654        34455 35678999999999999999


Q ss_pred             EecCCCeEEEEECCC---------ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          179 FGGKGVEVNVWDLDK---------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       179 sg~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      +|++||.|.+|++-.         .+++..+..|         .-.|+++...+.....++++.+.|.++++||+..+ .
T Consensus       140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---------tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~  209 (476)
T KOG0646|consen  140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---------TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-V  209 (476)
T ss_pred             ecCCCccEEEEEEEeecccccCCCccceeeeccC---------cceeEEEEecCCCccceEEEecCCceEEEEEeccc-e
Confidence            999999999999753         1233333333         34678887776544458999999999999999987 5


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----------------eEEEEEcceecc--eEEEEEECC
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------KLLGCFIGKCSG--SIRSIARHP  311 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----------------~~~~~~~~~~~~--~v~~l~~~p  311 (326)
                      .+.++.. ...+.+++.+|-++.+++|+.+|.|.+.++...                .....+.|| .+  .|++|+.+-
T Consensus       210 LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~  287 (476)
T KOG0646|consen  210 LLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAIST  287 (476)
T ss_pred             eeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEec
Confidence            5666654 488999999999999999999999999987642                345567788 77  999999999


Q ss_pred             CCCEEEEeccCccC
Q 020454          312 TLPIIASCGFLEAA  325 (326)
Q Consensus       312 ~~~~l~s~s~D~~~  325 (326)
                      |+.+|++|+.||.+
T Consensus       288 DgtlLlSGd~dg~V  301 (476)
T KOG0646|consen  288 DGTLLLSGDEDGKV  301 (476)
T ss_pred             CccEEEeeCCCCCE
Confidence            99999999999976

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.8e-23  Score=158.89  Aligned_cols=258  Identities=13%  Similarity=0.174  Sum_probs=195.1

Q ss_pred             cccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec
Q 020454            3 RTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (326)
Q Consensus         3 ~~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~   82 (326)
                      +...+++..|..--+++|+.|-.|+|||+.+. .+...+    -  .+...+.++.|........|++|+.||.|.+|+.
T Consensus        42 H~~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~l----l--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   42 HAGSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGIL----L--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV  114 (362)
T ss_pred             cccceeEEEecceeEeccCCCCcEEEEeccch-hhhcce----e--ccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence            45567777788889999999999999999877 222222    1  3455667788877666668999999999999999


Q ss_pred             cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      ..-+.+..++        .|.+.|+.++..+        .+..-++.+.|+.+++|++-...        ...+.++.+ 
T Consensus       115 ~~W~~~~slK--------~H~~~Vt~lsiHP--------S~KLALsVg~D~~lr~WNLV~Gr--------~a~v~~L~~-  169 (362)
T KOG0294|consen  115 GSWELLKSLK--------AHKGQVTDLSIHP--------SGKLALSVGGDQVLRTWNLVRGR--------VAFVLNLKN-  169 (362)
T ss_pred             CCeEEeeeec--------ccccccceeEecC--------CCceEEEEcCCceeeeehhhcCc--------cceeeccCC-
Confidence            8777777776        5667799888766        66788999999999999976533        222333332 


Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                       .-..+.|+|+|.+++.++.+ .|-||.+.+......+.+.          ..+.++.|.   ++..|++|..|+.|++|
T Consensus       170 -~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~----------~r~l~~~~l---~~~~L~vG~d~~~i~~~  234 (362)
T KOG0294|consen  170 -KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP----------KRILCATFL---DGSELLVGGDNEWISLK  234 (362)
T ss_pred             -cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc----------ccceeeeec---CCceEEEecCCceEEEe
Confidence             33448999999988887765 7889999876665544332          224455665   45599999999999999


Q ss_pred             eCCCCCCceeEEeecCCceEEEEe--cCCCCeEEEEcCCCcEEEEECCCC-----eEEEEEcceecceEEEEEEC
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTG-----KLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~--s~~~~~l~~g~~dg~v~iwd~~~~-----~~~~~~~~~~~~~v~~l~~~  310 (326)
                      |.... .+...+..|..+|.++.+  .|++.+|++++.||.|++||++..     +++..+.  ...+++|+...
T Consensus       235 D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n--~~~RltCl~~~  306 (362)
T KOG0294|consen  235 DTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN--TNVRLTCLRVK  306 (362)
T ss_pred             ccCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee--cCCccceeeeh
Confidence            99975 788999999999999884  456889999999999999999875     4555554  25566676554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6e-23  Score=157.39  Aligned_cols=231  Identities=14%  Similarity=0.135  Sum_probs=176.4

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      .+.+..+.|.  +....|++++.||++++|+....+....+.         +..++..+++.         ++..+++++
T Consensus        13 ~d~IS~v~f~--~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~---------d~~~~~~G~   72 (323)
T KOG1036|consen   13 EDGISSVKFS--PSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFA---------DESTIVTGG   72 (323)
T ss_pred             hhceeeEEEc--CcCCcEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeecc---------CCceEEEec
Confidence            4566677776  334468889999999999998765544443         44789988864         356899999


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      .||.|+.+|++..+..      .+    ..|...+.|+...+....+++|+.|++|++||.+..........        
T Consensus        73 ~dg~vr~~Dln~~~~~------~i----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--------  134 (323)
T KOG1036|consen   73 LDGQVRRYDLNTGNED------QI----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--------  134 (323)
T ss_pred             cCceEEEEEecCCcce------ee----ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--------
Confidence            9999999999865421      11    23577899999999889999999999999999987444433222        


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                        +..|.++...    ++.|++|+.|..|.+||+|+...+.+..+ .-+.++++|++-|++.-.++++-||.|.+=.+..
T Consensus       135 --~kkVy~~~v~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~  208 (323)
T KOG1036|consen  135 --GKKVYCMDVS----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDD  208 (323)
T ss_pred             --CceEEEEecc----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCC
Confidence              2346666553    45899999999999999998766553322 2356899999999988999999999998866665


Q ss_pred             C----eEEEEEccee--------cceEEEEEECCCCCEEEEeccCccC
Q 020454          290 G----KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       290 ~----~~~~~~~~~~--------~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .    +..+.|+.|.        --+|++|+|||--..+||||.||.+
T Consensus       209 s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V  256 (323)
T KOG1036|consen  209 SEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIV  256 (323)
T ss_pred             chHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceE
Confidence            4    4455677662        2379999999998999999999975

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.5e-24  Score=170.58  Aligned_cols=225  Identities=14%  Similarity=0.133  Sum_probs=178.7

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      ..++.+.+|+.|...|.|.+|.+.+|.++..+.        .|-..|+++.+..        ++..+++++.||.|.+|.
T Consensus        88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--------aHYQ~ITcL~fs~--------dgs~iiTgskDg~V~vW~  151 (476)
T KOG0646|consen   88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--------AHYQSITCLKFSD--------DGSHIITGSKDGAVLVWL  151 (476)
T ss_pred             ecCCCceEEEeecccCcEEEEEeccccHHHHHH--------hhccceeEEEEeC--------CCcEEEecCCCccEEEEE
Confidence            445566677777799999999999999887765        5557899999876        778999999999999999


Q ss_pred             cccccccccc-ccceEEEEEccCCCceEEEEEcCCC--CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCce
Q 020454          140 IEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF  216 (326)
Q Consensus       140 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  216 (326)
                      +-..-.+... ....++.|. .|.-+|+.+...+.+  ..|+|++.|.++++||+..+..+.++..          |..+
T Consensus       152 l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----------p~si  220 (476)
T KOG0646|consen  152 LTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----------PSSI  220 (476)
T ss_pred             EEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----------CCcc
Confidence            7653322111 334667777 456789999888764  7899999999999999999988776433          4568


Q ss_pred             eeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---------------CceeEEeecCC--ceEEEEecCCCCeEEEEcCC
Q 020454          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------RPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS  279 (326)
Q Consensus       217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~d  279 (326)
                      ++++..|.  ...+..|+.+|.|.+.++....               ..+..+.+|..  +|+|++++-||..|++|+.|
T Consensus       221 ~av~lDpa--e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  221 KAVALDPA--ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             eeEEEccc--ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence            89999985  3489999999999998865321               12345557776  99999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                      |.|.|||+.+.++++++..- .++|+.+.+.|-.+
T Consensus       299 g~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  299 GKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPLER  332 (476)
T ss_pred             CCEEEEecchHHHHHHHhhh-ccccceeEeecccc
Confidence            99999999999988887743 88999999976433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.6e-24  Score=170.05  Aligned_cols=232  Identities=10%  Similarity=0.109  Sum_probs=179.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.+-.+++||+.++     .....++.. ....+..++|.++  +..+++|+.|++|..||+ +|+.+...+. 
T Consensus       282 ryLlaCg~~e~~~lwDv~tg-----d~~~~y~~~-~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdl-Dgn~~~~W~g-  351 (519)
T KOG0293|consen  282 RYLLACGFDEVLSLWDVDTG-----DLRHLYPSG-LGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDL-DGNILGNWEG-  351 (519)
T ss_pred             CeEEecCchHheeeccCCcc-----hhhhhcccC-cCCCcceeEEccC--CceeEecCCCCcEEEecC-Ccchhhcccc-
Confidence            45888888889999999988     444445433 3344445666544  446999999999999999 4555455443 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .....|.+++...        ++.++++...|..+++++.+.....     +.     .....+|+++.++.++
T Consensus       352 ------vr~~~v~dlait~--------Dgk~vl~v~~d~~i~l~~~e~~~dr-----~l-----ise~~~its~~iS~d~  407 (519)
T KOG0293|consen  352 ------VRDPKVHDLAITY--------DGKYVLLVTVDKKIRLYNREARVDR-----GL-----ISEEQPITSFSISKDG  407 (519)
T ss_pred             ------cccceeEEEEEcC--------CCcEEEEEecccceeeechhhhhhh-----cc-----ccccCceeEEEEcCCC
Confidence                  2224577777655        7789999999999999997654311     11     2346789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      +++++--.+..|++||++..+.+.+..+|+....       +-.-+|--. +..++++|+.|++|+||+.+++ .++..+
T Consensus       408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f-------iIrSCFgg~-~~~fiaSGSED~kvyIWhr~sg-kll~~L  478 (519)
T KOG0293|consen  408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF-------IIRSCFGGG-NDKFIASGSEDSKVYIWHRISG-KLLAVL  478 (519)
T ss_pred             cEEEEEcccCeeEEeecchhhHHHHhhcccccce-------EEEeccCCC-CcceEEecCCCceEEEEEccCC-ceeEee
Confidence            9999999999999999998888888888875542       334456543 3458999999999999999988 789999


Q ss_pred             eecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCC
Q 020454          255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+|...|++|+|+|.. .++|+++.||+|+||-...
T Consensus       479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999999999964 6778999999999998753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=181.68  Aligned_cols=216  Identities=14%  Similarity=0.187  Sum_probs=182.3

Q ss_pred             CCeEEEEecCCcEEEEeccccceeee-ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      ..++++++.+++|++|+..++..+.. +.        +|.+.+.++.+..        .++++++|+.|.++++||....
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~--------GH~g~V~~l~~~~--------~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLV--------GHFGGVWGLAFPS--------GGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeecc--------CCCCCceeEEEec--------CCCEEEEEecCCcEEeEecCCC
Confidence            34699999999999999988887666 44        7889999999743        3689999999999999997654


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      .        .+..+. .+...+.++...  +.++++|+.|.+|++|++.++..+..+.+|.         .+|.++... 
T Consensus       282 ~--------C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~---------~~V~~v~~~-  340 (537)
T KOG0274|consen  282 E--------CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT---------GPVNCVQLD-  340 (537)
T ss_pred             c--------EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccc---------ccEEEEEec-
Confidence            4        455554 356678888775  4777889999999999999999888877644         568888886 


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecc
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSG  302 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~  302 (326)
                         +.++++|+.|++|++||++++ +++.++.+|..+|+++.+.+. ..+++|+.|+.|++||+++. +++..+.+| ..
T Consensus       341 ---~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h-~~  414 (537)
T KOG0274|consen  341 ---EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH-TS  414 (537)
T ss_pred             ---CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC-cc
Confidence               349999999999999999987 789999999999999988654 89999999999999999999 999999998 88


Q ss_pred             eEEEEEECCCCCEEEEeccCccC
Q 020454          303 SIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      -|..+.+  .+++|+++++|+.+
T Consensus       415 ~v~~l~~--~~~~Lvs~~aD~~I  435 (537)
T KOG0274|consen  415 LVSSLLL--RDNFLVSSSADGTI  435 (537)
T ss_pred             ccccccc--ccceeEeccccccE
Confidence            8877766  67799999999965

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.1e-24  Score=157.42  Aligned_cols=235  Identities=12%  Similarity=0.119  Sum_probs=170.4

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      ++.|++++.|++|+||+.+++.....+..+     .+|.+|+.-+.+.++.      .++.|++++.||+|.||.-....
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L-----~Gh~GPVwqv~wahPk------~G~iLAScsYDgkVIiWke~~g~   91 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAEL-----TGHSGPVWKVAWAHPK------FGTILASCSYDGKVIIWKEENGR   91 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEe-----cCCCCCeeEEeecccc------cCcEeeEeecCceEEEEecCCCc
Confidence            457999999999999999765532222221     3888999988876643      57889999999999999854321


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                            -.....+. .+...|++++|.|.  |-.|++++.||.|.|.+.+.... ...     ......|+..|++++|.
T Consensus        92 ------w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-w~t-----~ki~~aH~~GvnsVswa  158 (299)
T KOG1332|consen   92 ------WTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-WTT-----SKIVFAHEIGVNSVSWA  158 (299)
T ss_pred             ------hhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-ccc-----hhhhhccccccceeeec
Confidence                  11112222 34678999999886  57899999999999999875411 000     01112245678899998


Q ss_pred             ecCC-C-----------cEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCC----CCeEEEEcCCCcEEEE
Q 020454          223 SIDD-H-----------RKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD----SFNIYIGNGSGDLASV  285 (326)
Q Consensus       223 p~~~-~-----------~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~----~~~l~~g~~dg~v~iw  285 (326)
                      |..- |           +.|++|+.|..|+||+..... .....+..|...|+.++|.|.    -.+|++++.||++.||
T Consensus       159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw  238 (299)
T KOG1332|consen  159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW  238 (299)
T ss_pred             CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence            8521 1           579999999999999988642 123458899999999999997    3589999999999999


Q ss_pred             ECCCC--eEE-EEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          286 DIRTG--KLL-GCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       286 d~~~~--~~~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      ..+..  ... ..+... ...+..+.|++.|.+|+.++.|..
T Consensus       239 t~~~e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGDNK  279 (299)
T ss_pred             EecCccCcccccccccC-CcceEEEEEeccccEEEEecCCcE
Confidence            87632  111 112233 678999999999999999988864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.1e-24  Score=180.12  Aligned_cols=268  Identities=13%  Similarity=0.174  Sum_probs=188.7

Q ss_pred             eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE--EEEeeeCCCCCeEEEEecCCcEEEEeccc---cceeeeec
Q 020454           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL--AASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAIS   92 (326)
Q Consensus        18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~dg~i~i~~~~~---~~~~~~~~   92 (326)
                      +.....-.++|+.++.. .-..++...++..+ ...+.  .+.|. .-..++||+++.+|.|.+||+..   .+.+..+.
T Consensus        54 iv~AGrs~lklyai~~~-~~~~~~~~~~k~kq-n~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~  130 (839)
T KOG0269|consen   54 IVVAGRSLLKLYAINPN-DFSEKCNHRFKTKQ-NKFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN  130 (839)
T ss_pred             eEEecccceeeEeeCcc-cCCcceeeeccccc-ceeeehhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhh
Confidence            33334456788887755 22223333332211 11111  12233 33456899999999999999975   33333333


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                              .|+..+..+.+...       ..+.|++|+.||.|++||++....        ...+. ...+.|+.+.|+|
T Consensus       131 --------EH~Rs~~~ldfh~t-------ep~iliSGSQDg~vK~~DlR~~~S--------~~t~~-~nSESiRDV~fsp  186 (839)
T KOG0269|consen  131 --------EHERSANKLDFHST-------EPNILISGSQDGTVKCWDLRSKKS--------KSTFR-SNSESIRDVKFSP  186 (839)
T ss_pred             --------hhccceeeeeeccC-------CccEEEecCCCceEEEEeeecccc--------ccccc-ccchhhhceeecc
Confidence                    56677887876542       457899999999999999987552        11222 1456899999999


Q ss_pred             C-CCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-C
Q 020454          173 S-EKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-R  249 (326)
Q Consensus       173 ~-~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~  249 (326)
                      . +++|+++...|.+++||++..+. .+++..|.         +.|.++.|+|  ++.+||+|+.|++|+|||+...+ .
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~---------GpV~c~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~  255 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHN---------GPVLCLNWHP--NREWLATGGRDKMVKIWDMTDSRAK  255 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchhHHHHhhccc---------CceEEEeecC--CCceeeecCCCccEEEEeccCCCcc
Confidence            5 58999999999999999997543 44444443         6799999999  45599999999999999988542 3


Q ss_pred             ceeEEeecCCceEEEEecCCCC-eEEEEc--CCCcEEEEECCCCeE-EEEEcceecceEEEEEECC-CCCEEEEeccCcc
Q 020454          250 PVMSFDFRETPIKAVAEEPDSF-NIYIGN--GSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHP-TLPIIASCGFLEA  324 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~-~l~~g~--~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~  324 (326)
                      +..++.. ..++.+|.|-|... +|++++  .|-.|+|||++..-. ...|..| ...++.++|.. +...+.+||.||.
T Consensus       256 ~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  256 PKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccH
Confidence            4445533 47899999999854 555554  366899999987654 4567888 99999999975 5568999999987


Q ss_pred             C
Q 020454          325 A  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       334 v  334 (839)
T KOG0269|consen  334 V  334 (839)
T ss_pred             H
Confidence            5

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=2.3e-24  Score=160.56  Aligned_cols=229  Identities=17%  Similarity=0.200  Sum_probs=176.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .|.+++..|=.-||||+-++     .....|.   +.-.+-++.|..+.+  +|++|+.+..+||||++..+.  .... 
T Consensus        72 ~~aasaaadftakvw~a~tg-----delhsf~---hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~A--pp~E-  138 (334)
T KOG0278|consen   72 TRAASAAADFTAKVWDAVTG-----DELHSFE---HKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKA--PPKE-  138 (334)
T ss_pred             hhhhhhcccchhhhhhhhhh-----hhhhhhh---hhheeeeEEecccch--hhhccchHHHhhhhhccCCCC--Cchh-
Confidence            56777788888899999887     3333443   223344566654444  799999999999999975543  2222 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                          ...+.+.|..+.+..        .+..+++.+.|+.|++||.....        .+....  .+.+|.++.++++|
T Consensus       139 ----~~ghtg~Ir~v~wc~--------eD~~iLSSadd~tVRLWD~rTgt--------~v~sL~--~~s~VtSlEvs~dG  196 (334)
T KOG0278|consen  139 ----ISGHTGGIRTVLWCH--------EDKCILSSADDKTVRLWDHRTGT--------EVQSLE--FNSPVTSLEVSQDG  196 (334)
T ss_pred             ----hcCCCCcceeEEEec--------cCceEEeeccCCceEEEEeccCc--------EEEEEe--cCCCCcceeeccCC
Confidence                236778898888766        67889999999999999976543        333333  36789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ++|.+ ...+.|..||..+-..+...+          .|..|.+.+.+|+.  ..+++|+.|..++.||..++. .+..+
T Consensus       197 ~ilTi-a~gssV~Fwdaksf~~lKs~k----------~P~nV~SASL~P~k--~~fVaGged~~~~kfDy~Tge-Ei~~~  262 (334)
T KOG0278|consen  197 RILTI-AYGSSVKFWDAKSFGLLKSYK----------MPCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGE-EIGSY  262 (334)
T ss_pred             CEEEE-ecCceeEEeccccccceeecc----------CccccccccccCCC--ceEEecCcceEEEEEeccCCc-eeeec
Confidence            98866 466789999998877766543          23457788889964  489999999999999999884 46665


Q ss_pred             -eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          255 -DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       255 -~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                       ++|-++|.+|.|+|+|...++|++||+|++|-...++.
T Consensus       263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence             78999999999999999999999999999998876544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-21  Score=144.38  Aligned_cols=254  Identities=14%  Similarity=0.152  Sum_probs=180.9

Q ss_pred             CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (326)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~  127 (326)
                      +.+...+.+.  .|++.+.++++|+.|.+|++...+.......-..++   ...|++.|..+++.....     ..+.++
T Consensus        86 khhkgsiyc~--~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle---~nmhdgtirdl~fld~~~-----s~~~il  155 (350)
T KOG0641|consen   86 KHHKGSIYCT--AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLE---FNMHDGTIRDLAFLDDPE-----SGGAIL  155 (350)
T ss_pred             cccCccEEEE--EecCccCeEEecCCCceEEEEecccccccccCccee---eeecCCceeeeEEecCCC-----cCceEE
Confidence            3444454444  455667799999999999998775433222211111   136789999999876433     455666


Q ss_pred             EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC
Q 020454          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~  207 (326)
                      +....|..+||-.+-..      ......+. .+.+.|..+ ++-++-++++|+.|.+|+.||++-...+..+.+...+.
T Consensus       156 ~s~gagdc~iy~tdc~~------g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~  227 (350)
T KOG0641|consen  156 ASAGAGDCKIYITDCGR------GQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG  227 (350)
T ss_pred             EecCCCcceEEEeecCC------CCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC
Confidence            66655655555432111      11222222 223445544 22257899999999999999999888777765533221


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                       .+ ....|.+++..|  .|++|++|-.|....+||+|.+ ++++.+..|...|.++.|+|...|+++++.|..|++-|+
T Consensus       228 -gl-essavaav~vdp--sgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  228 -GL-ESSAVAAVAVDP--SGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             -Cc-ccceeEEEEECC--CcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence             11 235688999988  5779999999999999999976 789999999999999999999999999999999999999


Q ss_pred             CCC---e-EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          288 RTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       288 ~~~---~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..   + ++.....| ...+..+.|+|..--+++.|.|++|
T Consensus       303 qgdla~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  303 QGDLAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             ccchhhcCceEEEEec-cCceEEEEecCccceeeeccCcceE
Confidence            742   1 22334456 8889999999998889999999976

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-22  Score=168.99  Aligned_cols=272  Identities=14%  Similarity=0.093  Sum_probs=201.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .+|+.+-.+|.|.+|++...  -..+.+ -.+  .....+.+++|.   ++..|++.+.+|.|.-||+.+.+.+..+.. 
T Consensus        38 ~~lAvsRt~g~IEiwN~~~~--w~~~~v-i~g--~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-  108 (691)
T KOG2048|consen   38 NQLAVSRTDGNIEIWNLSNN--WFLEPV-IHG--PEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDS-  108 (691)
T ss_pred             CceeeeccCCcEEEEccCCC--ceeeEE-Eec--CCCCceeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecC-
Confidence            45888999999999999865  111111 122  344556677777   334599999999999999999888777663 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                             ..++|.+++..+        ....+..+++||.++.++......      ..-+.+ .+....|.+++|+|++
T Consensus       109 -------~gg~IWsiai~p--------~~~~l~IgcddGvl~~~s~~p~~I------~~~r~l-~rq~sRvLslsw~~~~  166 (691)
T KOG2048|consen  109 -------NGGAIWSIAINP--------ENTILAIGCDDGVLYDFSIGPDKI------TYKRSL-MRQKSRVLSLSWNPTG  166 (691)
T ss_pred             -------CCcceeEEEeCC--------ccceEEeecCCceEEEEecCCceE------EEEeec-ccccceEEEEEecCCc
Confidence                   347888888755        456788889999766666543321      011112 2335789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ..++.|+.||.|++||..++..+..... ....+.-+.+.-|-++.|..  ++ .|++|..-|+|.+||...+ ..++++
T Consensus       167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~Lr--d~-tI~sgDS~G~V~FWd~~~g-TLiqS~  241 (691)
T KOG2048|consen  167 TKIAGGSIDGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFLR--DS-TIASGDSAGTVTFWDSIFG-TLIQSH  241 (691)
T ss_pred             cEEEecccCceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEee--cC-cEEEecCCceEEEEcccCc-chhhhh
Confidence            9999999999999999998877662111 11111111223467888874  33 8999999999999999977 668899


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE---E-EEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---L-GCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~---~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..|+..|.+++..+++.++++++.|+.|..|...+.+.   . .....| ...|++++..++  .|++||.|.+.
T Consensus       242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~~--~l~sgG~d~~l  313 (691)
T KOG2048|consen  242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIEN--ALISGGRDFTL  313 (691)
T ss_pred             hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeecc--eEEecceeeEE
Confidence            99999999999999999999999999999998877633   1 223345 889999999877  89999999763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.9e-24  Score=183.91  Aligned_cols=239  Identities=12%  Similarity=0.167  Sum_probs=178.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..|+|+..+|.|.+||+...  +..++...|.++.+...  .+.|. .....+|++|+.||+|++||++..+....+.. 
T Consensus       101 NlIAT~s~nG~i~vWdlnk~--~rnk~l~~f~EH~Rs~~--~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-  174 (839)
T KOG0269|consen  101 NLIATCSTNGVISVWDLNKS--IRNKLLTVFNEHERSAN--KLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTFRS-  174 (839)
T ss_pred             hhheeecCCCcEEEEecCcc--ccchhhhHhhhhcccee--eeeec-cCCccEEEecCCCceEEEEeeecccccccccc-
Confidence            45899999999999999873  22355556666655544  34442 23344899999999999999987776666553 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                             ....|+.+.+.+.       .++.++++.++|.+.+||++....       ..+.+ ..|.++|.|+.|||++
T Consensus       175 -------nSESiRDV~fsp~-------~~~~F~s~~dsG~lqlWDlRqp~r-------~~~k~-~AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  175 -------NSESIRDVKFSPG-------YGNKFASIHDSGYLQLWDLRQPDR-------CEKKL-TAHNGPVLCLNWHPNR  232 (839)
T ss_pred             -------cchhhhceeeccC-------CCceEEEecCCceEEEeeccCchh-------HHHHh-hcccCceEEEeecCCC
Confidence                   3367887876552       567899999999999999986432       11111 2568899999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC--CCeEEEEeCCCCCCcee
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--DHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~  252 (326)
                      .+|||||.|+.|+|||+.+.+......        +....+|..++|-|.. ..+|++++.  |..|+|||++...-|..
T Consensus       233 ~~lATGGRDK~vkiWd~t~~~~~~~~t--------InTiapv~rVkWRP~~-~~hLAtcsmv~dtsV~VWDvrRPYIP~~  303 (839)
T KOG0269|consen  233 EWLATGGRDKMVKIWDMTDSRAKPKHT--------INTIAPVGRVKWRPAR-SYHLATCSMVVDTSVHVWDVRRPYIPYA  303 (839)
T ss_pred             ceeeecCCCccEEEEeccCCCccceeE--------EeecceeeeeeeccCc-cchhhhhhccccceEEEEeeccccccce
Confidence            999999999999999998654322211        1112468899999964 458888864  77999999997767889


Q ss_pred             EEeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCC
Q 020454          253 SFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      ++..|...++.++|.. |-..+.+++.||.|..-.++++
T Consensus       304 t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  304 TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            9999999999999965 3456679999998877666543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-22  Score=175.22  Aligned_cols=258  Identities=12%  Similarity=0.090  Sum_probs=188.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      --|++++.||.||+|+.... .+.++.+..     ....+.+++..    ..+|++|+.+++|.+|.+.+++.-..+..+
T Consensus        26 efi~tcgsdg~ir~~~~~sd-~e~P~ti~~-----~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf   95 (933)
T KOG1274|consen   26 EFICTCGSDGDIRKWKTNSD-EEEPETIDI-----SGELVSSIACY----SNHFLTGSEQNTVLRYKFPSGEEDTILARF   95 (933)
T ss_pred             CEEEEecCCCceEEeecCCc-ccCCchhhc-----cCceeEEEeec----ccceEEeeccceEEEeeCCCCCccceeeee
Confidence            47899999999999997755 233322211     23333333332    227999999999999999877654344332


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                      .        -++..+++..        ++..+++|+.|-.|++.++....        ..+..+ .+..+|.++.++|++
T Consensus        96 t--------lp~r~~~v~g--------~g~~iaagsdD~~vK~~~~~D~s--------~~~~lr-gh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   96 T--------LPIRDLAVSG--------SGKMIAAGSDDTAVKLLNLDDSS--------QEKVLR-GHDAPVLQLSYDPKG  150 (933)
T ss_pred             e--------ccceEEEEec--------CCcEEEeecCceeEEEEeccccc--------hheeec-ccCCceeeeeEcCCC
Confidence            2        4677777644        56789999999999999876533        233333 457899999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ++||+.+-||.|++||+.++.....+.+.....- ......+..++|+|. .+ .|+....|+.|++|+.... .+...+
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-~~~s~i~~~~aW~Pk-~g-~la~~~~d~~Vkvy~r~~w-e~~f~L  226 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-FILSRICTRLAWHPK-GG-TLAVPPVDNTVKVYSRKGW-ELQFKL  226 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCcccc-ccccceeeeeeecCC-CC-eEEeeccCCeEEEEccCCc-eeheee
Confidence            9999999999999999999988777766544321 111345778899994 34 7778888999999999876 444444


Q ss_pred             e--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454          255 D--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       255 ~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                      .  .+...+..++|+|+|.|||+++.+|.|.|||..+-+.    ... ...|.+++|.|+.+.|
T Consensus       227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~-~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEF-KRAVCCEAWKPNANAI  285 (933)
T ss_pred             cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccc-cceeEEEecCCCCCee
Confidence            3  3444589999999999999999999999999998222    222 6689999999987644

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2.3e-23  Score=176.20  Aligned_cols=279  Identities=14%  Similarity=0.119  Sum_probs=203.5

Q ss_pred             CCCeeeeeecCcccEEEEEecCCcC-----------CCcceeeecc-------------CC------CCCceEEEEEeee
Q 020454           12 CPPLRALTFDSLGLIKVIEARGEHG-----------GVPKVVERWG-------------DP------HSSNCVLAASIDD   61 (326)
Q Consensus        12 ~~~~~l~~~~~~G~i~vw~~~~~~~-----------~~~~~~~~~~-------------~~------~~~~~~~~~~~~~   61 (326)
                      -|+-.++||++||+||+|++.....           +..++...-+             ++      .....+-+  ..-
T Consensus       390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~--~~v  467 (1080)
T KOG1408|consen  390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA--LAV  467 (1080)
T ss_pred             CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE--EEE
Confidence            3556799999999999999887310           1111110000             00      11112222  234


Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      ++++++|++|..-|+++||++.+-++...+.        .|+..|.+|.+..+..     ....|++++.|..|++||+.
T Consensus       468 Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~-----~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  468 SPDGQHLASGDRGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVL-----TNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             CCCcceecccCccCceEEEEehhhhhhhhee--------cccceeEEEeecCchh-----hhHhhhhccCCceEEEEecc
Confidence            5677899999999999999998766655544        6778999999765432     34678999999999999987


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCC--CEEEEecCCCeEEEEECCC----ceeeeeecCCCCCCCCcCCCCc
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTW  215 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~  215 (326)
                      .+-...+.       .+ .|...|+++.|..+|  ..++++|.|..| +|+...    +..... ..+.      .....
T Consensus       535 rny~l~qt-------ld-~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r-~t~t------~~ktT  598 (1080)
T KOG1408|consen  535 RNYDLVQT-------LD-GHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPR-HTQT------LSKTT  598 (1080)
T ss_pred             cccchhhh-------hc-ccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccc-cccc------cccce
Confidence            54322111       11 246789999998877  678899999776 444432    221111 1110      01235


Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      ++.++..|+  .+++++++.|..|+|||+.++ +.++.|++   |++..-.+...|.|.||++.+.|.++.++|+.+|++
T Consensus       599 lYDm~Vdp~--~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  599 LYDMAVDPT--SKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             EEEeeeCCC--cceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence            778888884  459999999999999999988 44777774   556778889999999999999999999999999999


Q ss_pred             EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          293 LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       293 ~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.++.|| ...|+.+.|.+|.+.|++.+.||.+
T Consensus       676 vA~m~GH-sE~VTG~kF~nDCkHlISvsgDgCI  707 (1080)
T KOG1408|consen  676 VAQMTGH-SEAVTGVKFLNDCKHLISVSGDGCI  707 (1080)
T ss_pred             hhhhcCc-chheeeeeecccchhheeecCCceE
Confidence            9999998 9999999999999999999999964

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.1e-23  Score=171.31  Aligned_cols=240  Identities=14%  Similarity=0.065  Sum_probs=181.6

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc---eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~  125 (326)
                      .+.+.+.++.+..  ..+++++|+. |.|+|||+....   .+..+.+.      ..++.|+....++        ++..
T Consensus       417 ~HGEvVcAvtIS~--~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl------~rdnyiRSckL~p--------dgrt  479 (705)
T KOG0639|consen  417 AHGEVVCAVTISN--PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL------NRDNYIRSCKLLP--------DGRT  479 (705)
T ss_pred             ccCcEEEEEEecC--CcceeEecCC-CeEEEeeccCCCCCCcccccccc------CcccceeeeEecC--------CCce
Confidence            4455555555543  3346777776 889999996432   22223322      2346677666666        7789


Q ss_pred             EEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (326)
Q Consensus       126 l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  205 (326)
                      |++|++-.++.|||+.....       .|+.--......++.++++||.++.+++..||.|.|||+.+...+..+++|..
T Consensus       480 LivGGeastlsiWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD  552 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  552 (705)
T ss_pred             EEeccccceeeeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence            99999999999999875432       22221112234578899999999999999999999999999999999999874


Q ss_pred             CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc-----------------------------------
Q 020454          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-----------------------------------  250 (326)
Q Consensus       206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~-----------------------------------  250 (326)
                               .+.++..++  +|..|-+|+-|.+||-||+|.++++                                   
T Consensus       553 ---------GascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  553 ---------GASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             ---------CceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence                     466777775  7889999999999999999876431                                   


Q ss_pred             ----eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          251 ----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       251 ----~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                          .+.+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+.+.+.  ..+|.+.+.+-++++|+|||.|+.|
T Consensus       622 skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkA  698 (705)
T KOG0639|consen  622 SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKA  698 (705)
T ss_pred             CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcce
Confidence                112224667888999999999999989999999998888887776663  7899999999999999999999766

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.4e-24  Score=189.05  Aligned_cols=233  Identities=14%  Similarity=0.202  Sum_probs=185.0

Q ss_pred             CeEEEEecCCcEEEEeccc---cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           66 PLLAVARKNGLTDILNPLN---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      .+|+.|..||.|.+||...   +.-...+..     .+.|.+.|.++.+-..       .++.+++|..+|.|.|||++.
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~-------q~nlLASGa~~geI~iWDlnn  148 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPF-------QGNLLASGADDGEILIWDLNK  148 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeecccc-------CCceeeccCCCCcEEEeccCC
Confidence            4799999999999999864   221112221     2478899999986553       346899999999999999987


Q ss_pred             cccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                      .+.....  +     .......|.+++|+..- +.|++++.++.+.|||++..+++..+..+...       ..++.++|
T Consensus       149 ~~tP~~~--~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------~~~S~l~W  214 (1049)
T KOG0307|consen  149 PETPFTP--G-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------MHCSVLAW  214 (1049)
T ss_pred             cCCCCCC--C-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc-------cceeeeee
Confidence            5432111  1     12335789999998754 78899999999999999998887776665433       23779999


Q ss_pred             eecCCCcEEEEEeCCC---eEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          222 LSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      +|+.. ..+++++.|.   .|.+||+|....|++.++.|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+.
T Consensus       215 hP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  215 HPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             CCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            99744 4666666544   799999997778899999999999999999976 788899999999999999999999999


Q ss_pred             ceecceEEEEEECCCCC-EEEEeccCccCC
Q 020454          298 GKCSGSIRSIARHPTLP-IIASCGFLEAAS  326 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~-~l~s~s~D~~~~  326 (326)
                      .. ...+..+.|+|..+ .++.++.||.++
T Consensus       294 ~~-~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  294 AQ-GNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             CC-CcceeeeeecCCCcchhhhheecccee
Confidence            86 88999999999877 888889999764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.5e-22  Score=171.32  Aligned_cols=294  Identities=13%  Similarity=0.132  Sum_probs=192.3

Q ss_pred             eeeeeecCcccEEEEEecCCc-CCCcc--------------eeeeccC--CCCCceEEEEEeeeCCCCCeEEEEecCCcE
Q 020454           15 LRALTFDSLGLIKVIEARGEH-GGVPK--------------VVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLT   77 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~-~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i   77 (326)
                      --+++|-.+|.||+|+.++-+ .++..              ....+..  +..---.+++-|+...  ..|.+-..|..+
T Consensus       271 r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~--~klscVYndhSl  348 (1080)
T KOG1408|consen  271 RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETT--DKLSCVYNDHSL  348 (1080)
T ss_pred             ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCC--ceEEEEEcCceE
Confidence            457888999999999965431 00000              0000111  1111223455555443  379999999999


Q ss_pred             EEEeccccceeeeecccCCCCCCCCCCCeeeeeccccc---ccccCCCCceEEEEecCCcEEEEEcccccccc-------
Q 020454           78 DILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ---REESSSRSRTLLTCTTKGKASMRSIEVTKVSA-------  147 (326)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~-------  147 (326)
                      .|||+..-+.+.....+.     -|...|.++..++-+   .+...-..+.+++|++|++|++|+++......       
T Consensus       349 YvWDvrD~~kvgk~~s~l-----yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  349 YVWDVRDVNKVGKCSSML-----YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             EEEeccccccccceeeee-----eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            999997533222211110     222344444333210   01111134679999999999999987621100       


Q ss_pred             -------ccccceEE--------EEE------ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454          148 -------ESSCSTVK--------SWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       148 -------~~~~~~~~--------~~~------~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                             ...++...        +++      ......+.+++++|++++||+|..-|+|++||+...+....+..|..+
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE  503 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE  503 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce
Confidence                   00111111        111      011224999999999999999999999999999988877777776644


Q ss_pred             CCCcCCCCceeeeEEee-cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC--------------------------
Q 020454          207 SLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--------------------------  259 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------------------  259 (326)
                               |.++.|+- .-..++||+++.|.-|++||......+++++..|..                          
T Consensus       504 ---------ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim  574 (1080)
T KOG1408|consen  504 ---------ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM  574 (1080)
T ss_pred             ---------eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence                     55667653 223468999999999999998644344444444433                          


Q ss_pred             -----------------------ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc---eecceEEEEEECCCC
Q 020454          260 -----------------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTL  313 (326)
Q Consensus       260 -----------------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~~p~~  313 (326)
                                             .++.++..|..+++++++.|..|+|||+.+++..+.|++   | ++....+...|.+
T Consensus       575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDPSg  653 (1080)
T KOG1408|consen  575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDPSG  653 (1080)
T ss_pred             eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECCCc
Confidence                                   455566668888999999999999999999999999985   4 6788899999999


Q ss_pred             CEEEEeccCccC
Q 020454          314 PIIASCGFLEAA  325 (326)
Q Consensus       314 ~~l~s~s~D~~~  325 (326)
                      .|||+...|++.
T Consensus       654 iY~atScsdktl  665 (1080)
T KOG1408|consen  654 IYLATSCSDKTL  665 (1080)
T ss_pred             cEEEEeecCCce
Confidence            999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=6.8e-23  Score=166.54  Aligned_cols=250  Identities=14%  Similarity=0.211  Sum_probs=181.2

Q ss_pred             cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC
Q 020454           21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ  100 (326)
Q Consensus        21 ~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  100 (326)
                      +.|..+++|.-.+. .+...+....+ .+...|+-+.     ...-|+++|+..+.|+|||+.. +++..+..       
T Consensus        54 ~gdk~~~~~~K~g~-~~~Vp~~~k~~-gd~~~Cv~~~-----s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lk-------  118 (673)
T KOG4378|consen   54 AGDKVMRIKEKDGK-TPEVPRVRKLT-GDNAFCVACA-----SQSLYEISGGQSGCVKIWDLRA-KLIHRFLK-------  118 (673)
T ss_pred             CCceeEEEecccCC-CCccceeeccc-cchHHHHhhh-----hcceeeeccCcCceeeehhhHH-HHHhhhcc-------
Confidence            45557888876654 22222221111 1122222222     2234799999999999999973 33333322       


Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEE
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLF  179 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s  179 (326)
                      .|...|.++.+-.        .+.+|++++..|.|.+..+......+        .+....++.|.-+.+++.. .+|.+
T Consensus       119 dh~stvt~v~YN~--------~DeyiAsvs~gGdiiih~~~t~~~tt--------~f~~~sgqsvRll~ys~skr~lL~~  182 (673)
T KOG4378|consen  119 DHQSTVTYVDYNN--------TDEYIASVSDGGDIIIHGTKTKQKTT--------TFTIDSGQSVRLLRYSPSKRFLLSI  182 (673)
T ss_pred             CCcceeEEEEecC--------CcceeEEeccCCcEEEEecccCcccc--------ceecCCCCeEEEeecccccceeeEe
Confidence            6668899888655        67899999999999999977654322        2333335667789999976 56678


Q ss_pred             ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC
Q 020454          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET  259 (326)
Q Consensus       180 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  259 (326)
                      ++.+|.|.+||+....+.+.....        |..+...++|+|.+ ..+|++.+.|+.|.+||.+.. +....+. -+.
T Consensus       183 asd~G~VtlwDv~g~sp~~~~~~~--------HsAP~~gicfspsn-e~l~vsVG~Dkki~~yD~~s~-~s~~~l~-y~~  251 (673)
T KOG4378|consen  183 ASDKGAVTLWDVQGMSPIFHASEA--------HSAPCRGICFSPSN-EALLVSVGYDKKINIYDIRSQ-ASTDRLT-YSH  251 (673)
T ss_pred             eccCCeEEEEeccCCCcccchhhh--------ccCCcCcceecCCc-cceEEEecccceEEEeecccc-cccceee-ecC
Confidence            899999999999988887764332        22446688999974 458999999999999999965 4455553 347


Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCC
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      +.+.++|+++|.+|++|+..|.|..||++.. .++..+..| ...|++|+|-|..
T Consensus       252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~  305 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP  305 (673)
T ss_pred             CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence            8999999999999999999999999999964 567778888 8899999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=156.88  Aligned_cols=231  Identities=16%  Similarity=0.248  Sum_probs=168.6

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc-
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT-  143 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~-  143 (326)
                      .+++.+++.|.+-+||.++++.++..+.        +|.+.|.++.+.+        ....+++++.|++..||...-+ 
T Consensus       160 qpi~gtASADhTA~iWs~Esg~CL~~Y~--------GH~GSVNsikfh~--------s~~L~lTaSGD~taHIW~~av~~  223 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESGACLATYT--------GHTGSVNSIKFHN--------SGLLLLTASGDETAHIWKAAVNW  223 (481)
T ss_pred             CcceeecccccceeEEeeccccceeeec--------ccccceeeEEecc--------ccceEEEccCCcchHHHHHhhcC
Confidence            3478999999999999999999988877        7779999988765        5568999999999999973211 


Q ss_pred             -----cc---------------------------------------------------------ccccccceEEEEEccC
Q 020454          144 -----KV---------------------------------------------------------SAESSCSTVKSWNVCA  161 (326)
Q Consensus       144 -----~~---------------------------------------------------------~~~~~~~~~~~~~~~~  161 (326)
                           ..                                                         +++++|.+..+|++..
T Consensus       224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt  303 (481)
T KOG0300|consen  224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET  303 (481)
T ss_pred             cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence                 00                                                         2334444555555543


Q ss_pred             CCc----------eEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454          162 SGT----------IAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (326)
Q Consensus       162 ~~~----------v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l  230 (326)
                      +..          ++.+.-||..+++++++.|.+.++||++..- .+..+++|.         ..|+++.|...   ..+
T Consensus       304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt---------dtVTS~vF~~d---d~v  371 (481)
T KOG0300|consen  304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT---------DTVTSVVFNTD---DRV  371 (481)
T ss_pred             CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc---------cceeEEEEecC---Cce
Confidence            332          3334445555566666666666666665322 133334433         56889999863   279


Q ss_pred             EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE----EEcceecceEEE
Q 020454          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG----CFIGKCSGSIRS  306 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~----~~~~~~~~~v~~  306 (326)
                      ++|+.|.+|++||+++++.|+.++... ++++.++.+..+..|+.-..+..|++||+...++..    .-++| ..-|.+
T Consensus       372 VSgSDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c  449 (481)
T KOG0300|consen  372 VSGSDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTC  449 (481)
T ss_pred             eecCCCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeee
Confidence            999999999999999998899888665 789999999888889998899999999998554321    33477 889999


Q ss_pred             EEECCCC--CEEEEeccCccC
Q 020454          307 IARHPTL--PIIASCGFLEAA  325 (326)
Q Consensus       307 l~~~p~~--~~l~s~s~D~~~  325 (326)
                      .+|..+.  .-|++||.|+++
T Consensus       450 ~AW~eehp~cnLftcGFDR~v  470 (481)
T KOG0300|consen  450 CAWLEEHPACNLFTCGFDRMV  470 (481)
T ss_pred             eeccccCccccccccccccee
Confidence            9998443  358999999975

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-21  Score=167.56  Aligned_cols=280  Identities=11%  Similarity=0.082  Sum_probs=186.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.++.+.||+.... .+...+...+..... ..+.++..... --+.++.|+..|.+++|++.+++.+.+++.+
T Consensus       125 e~lia~d~~~~l~vw~~s~~-~~e~~l~~~~~~~~~-~~Ital~HP~T-YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~  201 (910)
T KOG1539|consen  125 EHLIAVDISNILFVWKTSSI-QEELYLQSTFLKVEG-DFITALLHPST-YLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF  201 (910)
T ss_pred             ceEEEEEccCcEEEEEeccc-cccccccceeeeccC-CceeeEecchh-heeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence            45888999999999999874 111111112222222 22444443322 2235899999999999999999999998853


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                              ...|+++...+        .-+.++.|..+|+|.++++...+        .+..++.. .+.|+.++|..||
T Consensus       202 --------~s~IT~ieqsP--------aLDVVaiG~~~G~ViifNlK~dk--------il~sFk~d-~g~VtslSFrtDG  256 (910)
T KOG1539|consen  202 --------FSRITAIEQSP--------ALDVVAIGLENGTVIIFNLKFDK--------ILMSFKQD-WGRVTSLSFRTDG  256 (910)
T ss_pred             --------ccceeEeccCC--------cceEEEEeccCceEEEEEcccCc--------EEEEEEcc-ccceeEEEeccCC
Confidence                    36788777554        55689999999999999987654        33333322 2445555555444


Q ss_pred             -CEEEEecCCCeEEEEECCCceeee-------------------------------------------------------
Q 020454          175 -KFSLFGGKGVEVNVWDLDKCEKIW-------------------------------------------------------  198 (326)
Q Consensus       175 -~~l~sg~~d~~i~iwd~~~~~~~~-------------------------------------------------------  198 (326)
                       ..+++|+..|.+.+||++..+...                                                       
T Consensus       257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P  336 (910)
T KOG1539|consen  257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP  336 (910)
T ss_pred             CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence             233444444555555554320000                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 020454          199 --------------------------------------------------------------------------------  198 (326)
Q Consensus       199 --------------------------------------------------------------------------------  198 (326)
                                                                                                      
T Consensus       337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~  416 (910)
T KOG1539|consen  337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT  416 (910)
T ss_pred             chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence                                                                                            


Q ss_pred             -----------eecCCCCCCCCcCC------CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE---eecC
Q 020454          199 -----------TAKPPPKNSLGIFT------PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF---DFRE  258 (326)
Q Consensus       199 -----------~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~  258 (326)
                                 ..++......-+..      ...+++++.++  .|+..+.|+..|.|-+|++.++ ....++   ..|.
T Consensus       417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~--CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~  493 (910)
T KOG1539|consen  417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF--CGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHK  493 (910)
T ss_pred             EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec--cCceEEEeccCCeEEEEEcccC-eeecccccCcccc
Confidence                       00000000000111      13455666665  5678889999999999999987 445666   4789


Q ss_pred             CceEEEEecCCCCeEEEEcCCCcEEEEECCCC-----------------------------------------eEEEEEc
Q 020454          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-----------------------------------------KLLGCFI  297 (326)
Q Consensus       259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-----------------------------------------~~~~~~~  297 (326)
                      .+|+.++...-++.+++++.+|.+.+||+...                                         +.++.|.
T Consensus       494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence            99999999888899999999999999998762                                         2345577


Q ss_pred             ceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          298 GKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      || .+.|++++|+|||++|++++.|++++
T Consensus       574 gh-~nritd~~FS~DgrWlisasmD~tIr  601 (910)
T KOG1539|consen  574 GH-GNRITDMTFSPDGRWLISASMDSTIR  601 (910)
T ss_pred             cc-ccceeeeEeCCCCcEEEEeecCCcEE
Confidence            87 99999999999999999999999763

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=2.3e-22  Score=161.55  Aligned_cols=241  Identities=12%  Similarity=0.037  Sum_probs=168.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCccee------eeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVV------ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-   87 (326)
                      .-+++.+..|.+.|||..+. ....+..      .+...+..  .-..++|..... ..|++|+.|++|.+||+..... 
T Consensus       138 ~iVAt~t~~~dv~Vfd~tk~-~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~  213 (422)
T KOG0264|consen  138 NIVATKTSSGDVYVFDYTKH-PSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKE  213 (422)
T ss_pred             cEEEecCCCCCEEEEEeccC-CCcccccccCCCceEEEeecc--cccccccccccc-eeEeeccCCCcEEEEeccccccC
Confidence            34667899999999998765 2222111      01111111  112344433333 3699999999999999964332 


Q ss_pred             ---eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCc
Q 020454           88 ---RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (326)
Q Consensus        88 ---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (326)
                         +.....+     ..|+..|...++...       +...+.+++.|+.+.|||.+.. ..      ....-...+..+
T Consensus       214 ~~~~~p~~~~-----~~h~~~VeDV~~h~~-------h~~lF~sv~dd~~L~iwD~R~~-~~------~~~~~~~ah~~~  274 (422)
T KOG0264|consen  214 DKVVDPKTIF-----SGHEDVVEDVAWHPL-------HEDLFGSVGDDGKLMIWDTRSN-TS------KPSHSVKAHSAE  274 (422)
T ss_pred             CccccceEEe-----ecCCcceehhhcccc-------chhhheeecCCCeEEEEEcCCC-CC------CCcccccccCCc
Confidence               1221211     256677777665442       4578999999999999998852 11      111111245789


Q ss_pred             eEEEEEcCC-CCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          165 IAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       165 v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      |.|++|+|- +.+||+|+.|++|++||+|+.+ ++..+..|.         ..|..|.|+|..+. .|++++.|+.+.+|
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~---------dev~~V~WSPh~et-vLASSg~D~rl~vW  344 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE---------DEVFQVEWSPHNET-VLASSGTDRRLNVW  344 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC---------cceEEEEeCCCCCc-eeEecccCCcEEEE
Confidence            999999995 4888999999999999999854 466666655         45889999998654 99999999999999


Q ss_pred             eCCCCCC-------------ceeEEeecCCceEEEEecCCCCe-EEEEcCCCcEEEEECC
Q 020454          243 DTSAQRR-------------PVMSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIR  288 (326)
Q Consensus       243 d~~~~~~-------------~~~~~~~~~~~i~~v~~s~~~~~-l~~g~~dg~v~iwd~~  288 (326)
                      |+..-..             ++....+|...|..+.|+|+... |++.+.|+.+.||.+.
T Consensus       345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9863211             23455578899999999998654 5588999999999986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=3.9e-22  Score=150.09  Aligned_cols=196  Identities=16%  Similarity=0.219  Sum_probs=161.6

Q ss_pred             CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  179 (326)
                      ++|+.+++-+.+..        +++.|++|+.|....+|--...        ..+-.++ .|.+.|+|++++.+.+.+++
T Consensus         7 ~GHERplTqiKyN~--------eGDLlFscaKD~~~~vw~s~nG--------erlGty~-GHtGavW~~Did~~s~~liT   69 (327)
T KOG0643|consen    7 QGHERPLTQIKYNR--------EGDLLFSCAKDSTPTVWYSLNG--------ERLGTYD-GHTGAVWCCDIDWDSKHLIT   69 (327)
T ss_pred             ccCccccceEEecC--------CCcEEEEecCCCCceEEEecCC--------ceeeeec-CCCceEEEEEecCCcceeee
Confidence            47788898776533        5689999999999999974222        2444555 35789999999999999999


Q ss_pred             ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-----CCCeEEEEeCCC------CC
Q 020454          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----NDHQVRLYDTSA------QR  248 (326)
Q Consensus       180 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-----~dg~v~iwd~~~------~~  248 (326)
                      |+.|.++++||+++++.+...+.          +..|..+.|++  ++++++.++     ..+.|.++|++.      .+
T Consensus        70 GSAD~t~kLWDv~tGk~la~~k~----------~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   70 GSADQTAKLWDVETGKQLATWKT----------NSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             ccccceeEEEEcCCCcEEEEeec----------CCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            99999999999999999988654          35688999998  455666554     346799999983      23


Q ss_pred             CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE-EEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .|...+..+++.++.+-|.|-+.+|++|..||.|.+||+++|+.+ ..-+.| ...|+.|.++|+..+++|+|.|.+|
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~d~T~FiT~s~Dtta  214 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH-SSKINDLQFSRDRTYFITGSKDTTA  214 (327)
T ss_pred             CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh-ccccccccccCCcceEEecccCccc
Confidence            578888889999999999999999999999999999999998554 455677 8899999999999999999999876

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.5e-22  Score=153.24  Aligned_cols=203  Identities=9%  Similarity=0.099  Sum_probs=155.3

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccc------eeeeecc-cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGD------LRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~------~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g  133 (326)
                      +..+++|+++|+.||.|.+||+++..      ++....+ +..+....|.-.|..+.|++.       +.+.+.+++.|.
T Consensus        52 d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-------DtGmFtssSFDh  124 (397)
T KOG4283|consen   52 DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-------DTGMFTSSSFDH  124 (397)
T ss_pred             ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-------cCceeecccccc
Confidence            34577899999999999999997543      1111111 111111355667888888884       457899999999


Q ss_pred             cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC---CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      ++++||.+..+        ....++.  ++.|++-+++|-   ..++|+|..|-.|++-|+.++.....+++|.      
T Consensus       125 tlKVWDtnTlQ--------~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr------  188 (397)
T KOG4283|consen  125 TLKVWDTNTLQ--------EAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR------  188 (397)
T ss_pred             eEEEeecccce--------eeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc------
Confidence            99999987654        3344444  567888888883   4688999999999999999999999999987      


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--------------eecCCceEEEEecCCCCeEEEE
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--------------DFRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~~i~~v~~s~~~~~l~~g  276 (326)
                         ..|.++.|+|.. .-.|++|+.||.|++||+|....+...+              ..|.+.+..++|..++.++++.
T Consensus       189 ---~~vlaV~Wsp~~-e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~  264 (397)
T KOG4283|consen  189 ---DGVLAVEWSPSS-EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC  264 (397)
T ss_pred             ---CceEEEEeccCc-eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence               447799999974 4488999999999999998542223222              2466789999999999999999


Q ss_pred             cCCCcEEEEECCCC
Q 020454          277 NGSGDLASVDIRTG  290 (326)
Q Consensus       277 ~~dg~v~iwd~~~~  290 (326)
                      +.|..+++|+..+|
T Consensus       265 gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  265 GTDDRIRVWNMESG  278 (397)
T ss_pred             cCccceEEeecccC
Confidence            99999999998764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.3e-21  Score=147.88  Aligned_cols=257  Identities=10%  Similarity=0.093  Sum_probs=173.8

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      ...+..++|+.  .++.+|+++.|++|+|||.+...  .-.+-.      ...|++.|..+.+.++.      .+..+++
T Consensus        13 ~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~------Wrah~~Si~rV~WAhPE------fGqvvA~   78 (361)
T KOG2445|consen   13 KDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSS------WRAHDGSIWRVVWAHPE------FGQVVAT   78 (361)
T ss_pred             cceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeee------EEecCCcEEEEEecCcc------ccceEEE
Confidence            34455555554  35589999999999999964332  211111      12677889988876643      5778999


Q ss_pred             EecCCcEEEEEccccccc-cccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeee--e----
Q 020454          129 CTTKGKASMRSIEVTKVS-AESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIW--T----  199 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~--~----  199 (326)
                      |+.|+++.||.-...... .+......... ......|+.+.|.|.  |-.||+++.||.+|||+....-.+.  .    
T Consensus        79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E  157 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE  157 (361)
T ss_pred             EecCCceeeeeecccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence            999999999984322111 11111111111 133568999999996  5789999999999999976532211  1    


Q ss_pred             ecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCC-----CeEEEEeCCCCC---CceeEEeecCCceEEEEecCC-
Q 020454          200 AKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTND-----HQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPD-  269 (326)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~d-----g~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~~-  269 (326)
                      +++.....  -.......++.|+|..- ..+||+|+.+     +.++||......   ..+.++..+..+|++++|.|+ 
T Consensus       158 i~~~~~pp--~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~  235 (361)
T KOG2445|consen  158 IQNVIDPP--GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI  235 (361)
T ss_pred             hhhccCCc--ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence            11111100  00113456888887532 2377777765     488999865432   234566789999999999997 


Q ss_pred             C---CeEEEEcCCCcEEEEECCCC--------------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          270 S---FNIYIGNGSGDLASVDIRTG--------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       270 ~---~~l~~g~~dg~v~iwd~~~~--------------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      |   ..||+++.|| |+||.++..                    +.+..+.+| .+.|+.+.|+-.|.+|++.|.||+++
T Consensus       236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VR  313 (361)
T KOG2445|consen  236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVR  313 (361)
T ss_pred             CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceee
Confidence            3   4788999999 999998731                    345567788 99999999999999999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=5.9e-24  Score=179.71  Aligned_cols=221  Identities=16%  Similarity=0.200  Sum_probs=182.4

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      ...+.+++|+.|-.+-+|.+..-..+..+.        .|+.+|.++.+..        ....|.+++.+|.|++||++.
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~--------~hespIeSl~f~~--------~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLT--------GHESPIESLTFDT--------SERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             ccceeeccCCCceeeccccccCCchhheee--------ccCCcceeeecCc--------chhhhcccccCCceeeeehhh
Confidence            344568999999999999885444333322        6778999988655        456889999999999999985


Q ss_pred             cccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                      ...        ++.+ ..+..++.++.|+|-+.|+|+|+.|..+++||++...+.+..++|.         .-|..+.|.
T Consensus       102 Ak~--------vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~---------~vv~~l~ls  163 (825)
T KOG0267|consen  102 AKI--------VRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT---------RVVDVLRLS  163 (825)
T ss_pred             hhh--------hhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc---------ceeEEEeec
Confidence            331        1111 1345678899999999999999999999999999888888777654         447788999


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                      |  +|++++.++.|.+++|||...+ +....|..|+..+..+.|+|..-.++.|+.|+++++||+++-+.+...... ..
T Consensus       164 P--~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-~~  239 (825)
T KOG0267|consen  164 P--DGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-TD  239 (825)
T ss_pred             C--CCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-cC
Confidence            8  6789999999999999999977 678899999999999999999989999999999999999998888888776 88


Q ss_pred             eEEEEEECCCCCEEEEecc
Q 020454          303 SIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s~  321 (326)
                      .|.+++|+|++..+++|-.
T Consensus       240 ~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             CceeeeecCCceeeecCch
Confidence            9999999999998887754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=2.4e-22  Score=158.06  Aligned_cols=195  Identities=15%  Similarity=0.179  Sum_probs=148.6

Q ss_pred             CCceEEEEecCCcEEEEEccccccc--------cccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECC
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVS--------AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLD  192 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~  192 (326)
                      .....+++++.|.|+||++.....+        ..+....+..++ .++..=+.++|+|-. ..|++|..-+.|++|...
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~  242 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS  242 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccccCccccceEeeeec
Confidence            4567888999999999998753321        112233444444 245677899999943 447788888999999988


Q ss_pred             CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-CCceeEEeecCCceEEEEecCCCC
Q 020454          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSF  271 (326)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~i~~v~~s~~~~  271 (326)
                      ++.-.......      ..|...|-.++|+|..++ .|++|+.||+|+|||+|.+ +++....+.|.+.|+.|.|+.+-.
T Consensus       243 ~g~W~vd~~Pf------~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~  315 (440)
T KOG0302|consen  243 TGSWKVDQRPF------TGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP  315 (440)
T ss_pred             cCceeecCccc------cccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence            75432221111      114466888999998665 9999999999999999976 334455688999999999999888


Q ss_pred             eEEEEcCCCcEEEEECCC---CeEEEEEcceecceEEEEEECCC-CCEEEEeccCccC
Q 020454          272 NIYIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPT-LPIIASCGFLEAA  325 (326)
Q Consensus       272 ~l~~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~~p~-~~~l~s~s~D~~~  325 (326)
                      +|++|+.||+++|||+++   ++++..|+-| ..+|++|.|+|. ...|+++|.|..+
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcE
Confidence            999999999999999985   6778899988 999999999984 4678888888764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=9e-22  Score=154.84  Aligned_cols=234  Identities=14%  Similarity=0.175  Sum_probs=158.7

Q ss_pred             CCCeEEEEecCCcEEEEecccc-------ceeeeecccCC-CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454           64 NDPLLAVARKNGLTDILNPLNG-------DLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~-------~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v  135 (326)
                      +..+.++=+..|.|+||++..-       +.........+ -....|.+.=.+|.+.+       ...+.+++|.-.+.|
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp-------~~~g~LlsGDc~~~I  236 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP-------IKTGRLLSGDCVKGI  236 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc-------ccccccccCccccce
Confidence            4556777788899999998521       00000000000 00012333334455533       134568888888888


Q ss_pred             EEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCce---eeeeecCCCCCCCCcC
Q 020454          136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIF  211 (326)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~  211 (326)
                      ++|......-....     +-+ ..+...|..+.|+|.. ..|++|+-|++|+|||++.+.   .+.. +.|        
T Consensus       237 ~lw~~~~g~W~vd~-----~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh--------  301 (440)
T KOG0302|consen  237 HLWEPSTGSWKVDQ-----RPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH--------  301 (440)
T ss_pred             EeeeeccCceeecC-----ccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc--------
Confidence            99986542211000     001 1245679999999975 899999999999999999873   2222 333        


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC--CCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~  288 (326)
                       ...|+.+.|+.. .+ +||+|+.||+++|||+|..  .+|+..|+.|..+|++|.|+|. ...|++++.|.+|.+||+.
T Consensus       302 -~sDVNVISWnr~-~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  302 -NSDVNVISWNRR-EP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             -CCceeeEEccCC-cc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence             356889999864 33 8999999999999999853  3689999999999999999997 4577799999999999986


Q ss_pred             CC-------------------eEEEEEcceecceEEEEEECCCC-CEEEEeccCcc
Q 020454          289 TG-------------------KLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEA  324 (326)
Q Consensus       289 ~~-------------------~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~  324 (326)
                      -.                   +++..-++  ...|..+.||+.- .+|++.+.||.
T Consensus       379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  379 VEADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ccCChhhhccccccchhcCCceeEEEecc--hhHhhhheeccCCCCeEEEecccce
Confidence            31                   12222222  4568899999854 48899998883

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.7e-21  Score=162.77  Aligned_cols=299  Identities=13%  Similarity=0.146  Sum_probs=193.9

Q ss_pred             CCCCCCC--eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454            8 ECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (326)
Q Consensus         8 ~~~~~~~--~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~   85 (326)
                      .-+.||.  -.|..++++|.|.++|.....-...+. +-..-..+-..++.+.|..  .+..|++++.|.++++||+.++
T Consensus        56 sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~-~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   56 SFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEER-QLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             cccCCCCccceEEEecCCCceeeecchhhhcchhhh-hhcccccccceeEeeccCC--CceeEEEccCCceeeeeeeccc
Confidence            3345555  458889999999999988651111111 0011234556666666665  4457999999999999999988


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc---------cccc-------
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------SAES-------  149 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------~~~~-------  149 (326)
                      ++...-..+      +|.+.+..+++.+.       +...+++|+.||.+.|||+.....         ..+.       
T Consensus       133 ~l~G~~~~~------GH~~SvkS~cf~~~-------n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  133 RLVGGRLNL------GHTGSVKSECFMPT-------NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             eeecceeec------ccccccchhhhccC-------CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            876653222      67788888876552       346799999999999999875441         0111       


Q ss_pred             ---ccceEEEEEccCCCceEE---EEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          150 ---SCSTVKSWNVCASGTIAF---SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       150 ---~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                         ....++.|... ...|.+   +-+..|...||+++. |+.|++||+++....+..........-......+--+.+.
T Consensus       200 skp~~kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~  278 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI  278 (720)
T ss_pred             Cchhhccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence               11122333332 223443   445557888888887 9999999999876655543332222111111112222333


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCC---ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE-EEEEc
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRET---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFI  297 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~---~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~~~~  297 (326)
                      -+..|.+|++.+.|+.|++|+++... .|+..+.++..   .+.+ ..+|++.++++|+.|...++|.+.+.+. ...+.
T Consensus       279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~  357 (720)
T KOG0321|consen  279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL  357 (720)
T ss_pred             ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCccCChhhhh
Confidence            33345566666669999999988542 35555544321   2333 5789999999999999999999988654 45567


Q ss_pred             ceecceEEEEEECCCC-CEEEEeccCccC
Q 020454          298 GKCSGSIRSIARHPTL-PIIASCGFLEAA  325 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~-~~l~s~s~D~~~  325 (326)
                      +| .-.|++++|.|.. .-+++|+.|-.+
T Consensus       358 Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~  385 (720)
T KOG0321|consen  358 GH-TREVTTVRWLPSATTPVATCSDDFRV  385 (720)
T ss_pred             Cc-ceEEEEEeeccccCCCceeeccCcce
Confidence            88 9999999999732 347788888653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=1.4e-22  Score=161.08  Aligned_cols=225  Identities=11%  Similarity=0.091  Sum_probs=167.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..+++.+.|+.+++|++...     .+..++..+..  -+.++-+.-...  .+++|+.|.+|++||+.......++...
T Consensus       232 ~~~iAas~d~~~r~Wnvd~~-----r~~~TLsGHtd--kVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~l~~  302 (459)
T KOG0288|consen  232 KHVIAASNDKNLRLWNVDSL-----RLRHTLSGHTD--KVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTVLPG  302 (459)
T ss_pred             ceEEeecCCCceeeeeccch-----hhhhhhccccc--ceeeehhhcccc--ceeeccccchhhhhhhhhhheecccccc
Confidence            67899999999999999987     55556654433  344444432222  3899999999999999876665554421


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .....|.+             ....++++..|++|++||.....        .  ...+...+.|.++..++++
T Consensus       303 ------S~cnDI~~-------------~~~~~~SgH~DkkvRfwD~Rs~~--------~--~~sv~~gg~vtSl~ls~~g  353 (459)
T KOG0288|consen  303 ------SQCNDIVC-------------SISDVISGHFDKKVRFWDIRSAD--------K--TRSVPLGGRVTSLDLSMDG  353 (459)
T ss_pred             ------ccccceEe-------------cceeeeecccccceEEEeccCCc--------e--eeEeecCcceeeEeeccCC
Confidence                  11122321             12468999999999999976533        2  2233446799999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ..|.+++.|.++.+.|+++.+....+....     ++....++.+.|+|  ++.++++|+.||.|+||++.++ +....+
T Consensus       354 ~~lLsssRDdtl~viDlRt~eI~~~~sA~g-----~k~asDwtrvvfSp--d~~YvaAGS~dgsv~iW~v~tg-KlE~~l  425 (459)
T KOG0288|consen  354 LELLSSSRDDTLKVIDLRTKEIRQTFSAEG-----FKCASDWTRVVFSP--DGSYVAAGSADGSVYIWSVFTG-KLEKVL  425 (459)
T ss_pred             eEEeeecCCCceeeeecccccEEEEeeccc-----cccccccceeEECC--CCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence            999999999999999999887655544322     22224478999999  5669999999999999999987 555555


Q ss_pred             eecCC--ceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454          255 DFRET--PIKAVAEEPDSFNIYIGNGSGDLASV  285 (326)
Q Consensus       255 ~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iw  285 (326)
                      .....  .|++++|+|.|.++++++.++.+.+|
T Consensus       426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            54433  59999999999999999999999999

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.3e-21  Score=161.43  Aligned_cols=235  Identities=15%  Similarity=0.161  Sum_probs=182.3

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      .++++++....  +.||++..||.|.+|++..+=+....-.-      +.+..|.+++|.         .+..|++.+.+
T Consensus        27 ~I~slA~s~kS--~~lAvsRt~g~IEiwN~~~~w~~~~vi~g------~~drsIE~L~W~---------e~~RLFS~g~s   89 (691)
T KOG2048|consen   27 EIVSLAYSHKS--NQLAVSRTDGNIEIWNLSNNWFLEPVIHG------PEDRSIESLAWA---------EGGRLFSSGLS   89 (691)
T ss_pred             ceEEEEEeccC--CceeeeccCCcEEEEccCCCceeeEEEec------CCCCceeeEEEc---------cCCeEEeecCC
Confidence            34455554333  35999999999999999876554443321      445789999974         35789999999


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      |.|.-||+....        ..+..+ ...+.|.+++.+|.+..+++|+.||.+..++...++..+...-.       +.
T Consensus        90 g~i~EwDl~~lk--------~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~-------rq  153 (691)
T KOG2048|consen   90 GSITEWDLHTLK--------QKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM-------RQ  153 (691)
T ss_pred             ceEEEEecccCc--------eeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc-------cc
Confidence            999999987644        333444 34678999999999999999999998888888887776653322       22


Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-----e---cCCceEEEEecCCCCeEEEEcCCCcEEE
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----F---RETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~---~~~~i~~v~~s~~~~~l~~g~~dg~v~i  284 (326)
                      ...|.+++|.|  ++..+++|+.||.|++||...+ ..++...     .   ..--|.+|.|-. ...|++|+..|+|.+
T Consensus       154 ~sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~-~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~F  229 (691)
T KOG2048|consen  154 KSRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSG-QTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTF  229 (691)
T ss_pred             cceEEEEEecC--CccEEEecccCceEEEEEcCCC-ceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEE
Confidence            35688999998  4557999999999999999977 3344211     1   223467777664 458999999999999


Q ss_pred             EECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ||...+.+++.+..| ...|.+|+..+++..++++|.|+.+
T Consensus       230 Wd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~i  269 (691)
T KOG2048|consen  230 WDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKI  269 (691)
T ss_pred             EcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCce
Confidence            999999999999998 9999999999999999999999864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.5e-21  Score=148.55  Aligned_cols=265  Identities=11%  Similarity=0.102  Sum_probs=187.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-------e
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-------L   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-------~   87 (326)
                      =|++||+.|+.|+|||..+. .+.......|..  +...+..+.|++..-++.+|+++.|+++.||+-....       .
T Consensus        26 RRmAtCSsDq~vkI~d~~~~-s~~W~~Ts~Wra--h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~W  102 (361)
T KOG2445|consen   26 RRMATCSSDQTVKIWDSTSD-SGTWSCTSSWRA--HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRW  102 (361)
T ss_pred             ceeeeccCCCcEEEEeccCC-CCceEEeeeEEe--cCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccccee
Confidence            68999999999999998665 788888778874  4456778899999999999999999999999753111       1


Q ss_pred             eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-------
Q 020454           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-------  160 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-------  160 (326)
                      +.....      ......|..+.|.+.+      .+-++++++.||.++||+.-...        .++.|.+.       
T Consensus       103 v~~ttl------~DsrssV~DV~FaP~h------lGLklA~~~aDG~lRIYEA~dp~--------nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen  103 VRRTTL------VDSRSSVTDVKFAPKH------LGLKLAAASADGILRIYEAPDPM--------NLSQWTLQHEIQNVI  162 (361)
T ss_pred             EEEEEe------ecCCcceeEEEecchh------cceEEEEeccCcEEEEEecCCcc--------ccccchhhhhhhhcc
Confidence            111111      1233678878776654      46689999999999999854322        33444432       


Q ss_pred             -----CCCceEEEEEcCCC---CEEEEecCC-----CeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          161 -----ASGTIAFSKVDISE---KFSLFGGKG-----VEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       161 -----~~~~v~~~~~~~~~---~~l~sg~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                           +..+..|+.|+|..   .+||.|+.+     +.+.||...... .-..+....      .++..|++++|.|+-.
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~------d~~dpI~di~wAPn~G  236 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP------DHTDPIRDISWAPNIG  236 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC------CCCCcceeeeeccccC
Confidence                 23468899999854   788888776     478888876543 222222111      2346799999999632


Q ss_pred             --CcEEEEEeCCCeEEEEeCCCCC-------------------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454          227 --HRKFVAGTNDHQVRLYDTSAQR-------------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV  285 (326)
Q Consensus       227 --~~~l~~~~~dg~v~iwd~~~~~-------------------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iw  285 (326)
                        -.+||+++.|| |+||.++...                   +.+..+..|+..|..+.|+-.|..|++.+.||.|++|
T Consensus       237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence              24789999999 9999987421                   1234566789999999999999999999999999999


Q ss_pred             ECCC---CeEEEEEcceecceEEEEEECC
Q 020454          286 DIRT---GKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       286 d~~~---~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      ...-   -++...+..  ++.+....|.+
T Consensus       316 kany~n~~kC~sv~~~--e~~~~~~~~~~  342 (361)
T KOG2445|consen  316 KANYNNLWKCTSVLKA--EGSVTKPDFSQ  342 (361)
T ss_pred             hhhhhhhheeeeEEec--cCCCCCccccc
Confidence            7642   244444543  34455555543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.8e-21  Score=167.71  Aligned_cols=232  Identities=11%  Similarity=0.061  Sum_probs=182.2

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEecccc-ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      ....++++++.+  +|++++.||.|++|+.... +....+.        .....+.+++.          ..+.+++++.
T Consensus        15 G~t~i~~d~~ge--fi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~----------~s~~f~~~s~   74 (933)
T KOG1274|consen   15 GLTLICYDPDGE--FICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIAC----------YSNHFLTGSE   74 (933)
T ss_pred             ceEEEEEcCCCC--EEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEee----------cccceEEeec
Confidence            355666665544  8999999999999987544 2222222        13356776765          4579999999


Q ss_pred             CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      ++.|.+|.+....     .++.+..+.    -++.+++++.+|+++|.|+.|-.|++-++......+.+.+|.       
T Consensus        75 ~~tv~~y~fps~~-----~~~iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-------  138 (933)
T KOG1274|consen   75 QNTVLRYKFPSGE-----EDTILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-------  138 (933)
T ss_pred             cceEEEeeCCCCC-----ccceeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-------
Confidence            9999999976533     344454444    489999999999999999999999999999888888888876       


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-------ec-CCceEEEEecCCCCeEEEEcCCCcEE
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-------FR-ETPIKAVAEEPDSFNIYIGNGSGDLA  283 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~-~~~i~~v~~s~~~~~l~~g~~dg~v~  283 (326)
                        ..|.++.|+|  .+++||+.+.||.|++||+..+ ....++.       .. ...+..++|+|+|..+++-..|+.|+
T Consensus       139 --apVl~l~~~p--~~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk  213 (933)
T KOG1274|consen  139 --APVLQLSYDP--KGNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK  213 (933)
T ss_pred             --CceeeeeEcC--CCCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence              5688999999  4569999999999999999865 3333332       22 45678899999988899889999999


Q ss_pred             EEECCCCeEEEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454          284 SVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +|+..+.+....+... +...+..+.|+|.|+|||+++.||.+
T Consensus       214 vy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I  256 (933)
T KOG1274|consen  214 VYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI  256 (933)
T ss_pred             EEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence            9999999998888742 24459999999999999999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=6.9e-22  Score=165.53  Aligned_cols=229  Identities=11%  Similarity=0.087  Sum_probs=176.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|..+|.|.|||....     +....... .+...+-+++|.    ...+.+|+.||.|..+|+...+......  
T Consensus       230 ~~LavG~~~g~v~iwD~~~~-----k~~~~~~~-~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~--  297 (484)
T KOG0305|consen  230 SHLAVGTSDGTVQIWDVKEQ-----KKTRTLRG-SHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTL--  297 (484)
T ss_pred             CEEEEeecCCeEEEEehhhc-----cccccccC-CcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhh--
Confidence            56889999999999998866     23223332 134444445553    3479999999999999998666544421  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  173 (326)
                           +.|...|.++.+..        +..++++++.|+.+.|||.....       -.++++  .+...|..++|+|- 
T Consensus       298 -----~~H~qeVCgLkws~--------d~~~lASGgnDN~~~Iwd~~~~~-------p~~~~~--~H~aAVKA~awcP~q  355 (484)
T KOG0305|consen  298 -----QGHRQEVCGLKWSP--------DGNQLASGGNDNVVFIWDGLSPE-------PKFTFT--EHTAAVKALAWCPWQ  355 (484)
T ss_pred             -----hcccceeeeeEECC--------CCCeeccCCCccceEeccCCCcc-------ccEEEe--ccceeeeEeeeCCCc
Confidence                 36778999999876        67899999999999999973322       123333  35778999999995 


Q ss_pred             CCEEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCC
Q 020454          174 EKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       174 ~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~  249 (326)
                      ..+||+|+  .|+.|++||..+++.+.....          ...|+++.|++..  +.|++  |..++.|.||+..+. .
T Consensus       356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----------gsQVcsL~Wsk~~--kEi~sthG~s~n~i~lw~~ps~-~  422 (484)
T KOG0305|consen  356 SGLLATGGGSADRCIKFWNTNTGARIDSVDT----------GSQVCSLIWSKKY--KELLSTHGYSENQITLWKYPSM-K  422 (484)
T ss_pred             cCceEEcCCCcccEEEEEEcCCCcEeccccc----------CCceeeEEEcCCC--CEEEEecCCCCCcEEEEecccc-c
Confidence            58899865  789999999998888766433          2569999999853  24444  456779999999987 6


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      .+..+.+|...|..++++|||..|++|+.|.++++|++-..
T Consensus       423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            68899999999999999999999999999999999998764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.6e-21  Score=150.35  Aligned_cols=274  Identities=13%  Similarity=0.137  Sum_probs=177.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc---cceeeee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~---~~~~~~~   91 (326)
                      -.|+|+..|+.||+|+++.......+ +.+..-+-....  .+.|.++-.. +++..-...++++|....   |.....+
T Consensus        99 K~lat~~~Dr~Ir~w~~~DF~~~eHr-~~R~nve~dhpT--~V~FapDc~s-~vv~~~~g~~l~vyk~~K~~dG~~~~~~  174 (420)
T KOG2096|consen   99 KKLATISGDRSIRLWDVRDFENKEHR-CIRQNVEYDHPT--RVVFAPDCKS-VVVSVKRGNKLCVYKLVKKTDGSGSHHF  174 (420)
T ss_pred             ceeEEEeCCceEEEEecchhhhhhhh-HhhccccCCCce--EEEECCCcce-EEEEEccCCEEEEEEeeecccCCCCccc
Confidence            67999999999999999865111111 111111111222  3344433332 344445567899997642   2221111


Q ss_pred             cc---cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           92 SN---AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        92 ~~---~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      ..   .+.+  ..+.-.+..+...+        ...+|.+++.|..|.+|++....         +...+. ....-+..
T Consensus       175 v~~D~~~f~--~kh~v~~i~iGiA~--------~~k~imsas~dt~i~lw~lkGq~---------L~~idt-nq~~n~~a  234 (420)
T KOG2096|consen  175 VHIDNLEFE--RKHQVDIINIGIAG--------NAKYIMSASLDTKICLWDLKGQL---------LQSIDT-NQSSNYDA  234 (420)
T ss_pred             ccccccccc--hhcccceEEEeecC--------CceEEEEecCCCcEEEEecCCce---------eeeecc-ccccccce
Confidence            11   1111  13334455444433        56789999999999999987332         111121 12345567


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCc--------eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKC--------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                      +++|+|+++++++.--.+++|.+--+        ..++.+++|.         ..|...+|++  +...+++.+.||+++
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~---------saV~~~aFsn--~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ---------SAVLAAAFSN--SSTRAVTVSKDGKWR  303 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch---------hheeeeeeCC--CcceeEEEecCCcEE
Confidence            89999999999999999999996422        2456666665         5688999998  455899999999999


Q ss_pred             EEeCCCC----CC--ceeEE----eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454          241 LYDTSAQ----RR--PVMSF----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       241 iwd~~~~----~~--~~~~~----~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~  310 (326)
                      +||+.-.    +.  .++..    ....+.-..++++|.|..|+.+. ...+++|..++|+....+..-|.+.|.+|+|+
T Consensus       304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~  382 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYS  382 (420)
T ss_pred             EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence            9996521    11  11221    11122334789999999888754 44899999999988877764339999999999


Q ss_pred             CCCCEEEEeccCccC
Q 020454          311 PTLPIIASCGFLEAA  325 (326)
Q Consensus       311 p~~~~l~s~s~D~~~  325 (326)
                      ++|++++||| |+++
T Consensus       383 ~~g~~~atcG-dr~v  396 (420)
T KOG2096|consen  383 SDGKYIATCG-DRYV  396 (420)
T ss_pred             CCCcEEeeec-ceee
Confidence            9999999998 5554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=1.1e-22  Score=156.30  Aligned_cols=207  Identities=13%  Similarity=0.058  Sum_probs=159.1

Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-------cccc-c-cceEEEEEccCCCceEEEEEc
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-------SAES-S-CSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-------~~~~-~-~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      .|..++.+.++.+        ++..+++|+.|..|+|.|++....       ..+. . ..++..--..+..+|+++.||
T Consensus       110 ~HK~~cR~aafs~--------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  110 SHKSPCRAAAFSP--------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             ecccceeeeeeCC--------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            5567777666544        667889999999999999873111       1111 1 112222223457789999999


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      |....|++|+.|++|++||+........++-..       ....|.+++|+|.  |.+|++|+.-.++++||+.+. ++.
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-------d~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~-Qcf  251 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-------DTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTY-QCF  251 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHhh-------ccceeeeEeecCC--CceEEEecCCCceeEEeccce-eEe
Confidence            999999999999999999998644332222211       2246889999994  569999999999999999986 433


Q ss_pred             eEE---eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          252 MSF---DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       252 ~~~---~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..-   ..|...|++|.+++.|++.++|+.||.|++||=-+++++.++. +|-...|.+..|..++++|.+.|.|..+
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence            322   2578899999999999999999999999999999999998885 5545689999999999999999999765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.7e-21  Score=156.92  Aligned_cols=228  Identities=14%  Similarity=0.132  Sum_probs=170.3

Q ss_pred             CCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeee
Q 020454           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (326)
Q Consensus        11 ~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~   90 (326)
                      .|..--+++|+.+-.|.||+..+.     ..+..|.  .+...++.++|...+.  .|++++.|++|++|+++...++.+
T Consensus       211 S~Dgkylatgg~d~~v~Iw~~~t~-----ehv~~~~--ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  211 SSDGKYLATGGRDRHVQIWDCDTL-----EHVKVFK--GHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             cCCCcEEEecCCCceEEEecCccc-----chhhccc--ccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHH
Confidence            344466888999999999999987     4444444  4556667777765555  499999999999999988777776


Q ss_pred             ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  170 (326)
                      +.        .|++.|.++....        ....+-++..|.++++|++...         +-.++. .+...+.|++|
T Consensus       282 ly--------GHqd~v~~IdaL~--------reR~vtVGgrDrT~rlwKi~ee---------sqlifr-g~~~sidcv~~  335 (479)
T KOG0299|consen  282 LY--------GHQDGVLGIDALS--------RERCVTVGGRDRTVRLWKIPEE---------SQLIFR-GGEGSIDCVAF  335 (479)
T ss_pred             Hh--------CCccceeeechhc--------ccceEEeccccceeEEEecccc---------ceeeee-CCCCCeeeEEE
Confidence            65        6678888887655        3345555669999999998432         222333 33568899998


Q ss_pred             cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC---cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG---IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      -. ...|++|+.+|.|.+|++.+.++++..+......-.   +..+.||++++..|..+  ++++|+.+|.|++|-+..+
T Consensus       336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd--L~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD--LLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc--eEEecCCCCceEEEEecCC
Confidence            84 566779999999999999999999886643322222   33456999999999644  9999999999999998866


Q ss_pred             C---CceeEEeecCCceEEEEecCCCCeEEEEc
Q 020454          248 R---RPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       248 ~---~~~~~~~~~~~~i~~v~~s~~~~~l~~g~  277 (326)
                      .   .++..+. -.+.|++++|+++|+.|++|.
T Consensus       413 ~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  413 LRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence            3   3445554 457899999999999887663

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=7.7e-21  Score=147.13  Aligned_cols=286  Identities=12%  Similarity=0.174  Sum_probs=205.0

Q ss_pred             CCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC--CCeEEEEecCCcEEEEecccccee
Q 020454           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGDLR   88 (326)
Q Consensus        11 ~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~i~~~~~~~~~   88 (326)
                      +|....+++......+.+++....  +...+.+++.++++.+....++|..+..  +++||+|+.-|.|+|.|+.++++.
T Consensus        51 ~~~e~~vfatvG~~rvtiy~c~~d--~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~  128 (385)
T KOG1034|consen   51 GCDEPQVFATVGGNRVTIYECPGD--GGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS  128 (385)
T ss_pred             CCCCCceEEEeCCcEEEEEEECCc--cceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc
Confidence            455555666666667888988865  3345778888888888888888875544  689999999999999999999887


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceE
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIA  166 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~  166 (326)
                      ..+.        .|.+.|..+.+.+.       ..+++++++.|-.|++|++....        .+.++-  ..|...|.
T Consensus       129 ~~~~--------ghG~sINeik~~p~-------~~qlvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  129 KNYR--------GHGGSINEIKFHPD-------RPQLVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVL  185 (385)
T ss_pred             ccee--------ccCccchhhhcCCC-------CCcEEEEecCCceEEEEeccCCe--------EEEEecccccccCcEE
Confidence            7776        56678887776552       34689999999999999988654        333332  23567899


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec------------------CCCCCC-CCcCCCCceeeeEEeecCCC
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK------------------PPPKNS-LGIFTPTWFTSAAFLSIDDH  227 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~------------------~~~~~~-~~~~~~~~v~~~~~~p~~~~  227 (326)
                      +++|++++.+|+++|.|..|.+|++...+....+.                  .+-... -.-.|..+|-++.|.    +
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~----g  261 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF----G  261 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH----h
Confidence            99999999999999999999999998532111100                  000000 011144567777775    3


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCC-------------ceeEEeecCCceEEE--EecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          228 RKFVAGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       228 ~~l~~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~~~i~~v--~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      +++++-+.++.|..|.+-..++             .+..+......|.-+  +|.|.++.|+.|.+.|.|++||++..++
T Consensus       262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            4889999999999998821111             123344444455555  4556799999999999999999997655


Q ss_pred             EE--EEcc-eecceEEEEEECCCCCEEEEeccCccC
Q 020454          293 LG--CFIG-KCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       293 ~~--~~~~-~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..  ++.. .....|+..+|+.++.+|+....|+++
T Consensus       342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V  377 (385)
T KOG1034|consen  342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV  377 (385)
T ss_pred             ccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence            21  1211 114579999999999999999999875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2e-21  Score=161.41  Aligned_cols=281  Identities=16%  Similarity=0.202  Sum_probs=192.6

Q ss_pred             ccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454            4 TTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL   83 (326)
Q Consensus         4 ~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~   83 (326)
                      +.++++.|   ..|++|++||.||||++.++     .-+..+.-.   ..+.++.|...+.-.+||++-... +.|.+..
T Consensus       405 ~iSvdp~G---~wlasGsdDGtvriWEi~Tg-----Rcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~  472 (733)
T KOG0650|consen  405 SISVDPSG---EWLASGSDDGTVRIWEIATG-----RCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI  472 (733)
T ss_pred             EEEecCCc---ceeeecCCCCcEEEEEeecc-----eEEEEEeec---ceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence            44556655   88999999999999999988     333333322   244456666666666666665554 5555554


Q ss_pred             ccceeee------ecccCCCC----------------CC-------CCCCCeeeeecccccccccCCCCceEEEEecC--
Q 020454           84 NGDLRVA------ISNAGDSG----------------AQ-------PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--  132 (326)
Q Consensus        84 ~~~~~~~------~~~~~~~~----------------~~-------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~--  132 (326)
                      -|..+..      +....+..                .+       .+..+|..+.+..        .+.+|++...+  
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--------kGDYlatV~~~~~  544 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR--------KGDYLATVMPDSG  544 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec--------CCceEEEeccCCC
Confidence            3311111      00000000                00       1223444444433        45566665443  


Q ss_pred             -CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          133 -GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       133 -g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                       ..|.|+++.....        ..-++ ...+.+.++.|||...+|++++. ..|+|||+..++.+.++...        
T Consensus       545 ~~~VliHQLSK~~s--------Q~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--------  606 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKS--------QSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--------  606 (733)
T ss_pred             cceEEEEecccccc--------cCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--------
Confidence             4566666654321        11111 12567999999999988888665 58999999988777765442        


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC---
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---  288 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~---  288 (326)
                       ..||..++.+|.  |..|+.++.|+.+..||+.-..+|.+++..|...+++|+|++.-.++++|+.||++.||.-.   
T Consensus       607 -~kwiS~msihp~--GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  607 -SKWISSMSIHPN--GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             -CeeeeeeeecCC--CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence             268999999985  44799999999999999987667889999999999999999999999999999999998532   


Q ss_pred             ---CC---eEEEEEcceecce----EEEEEECCCCCEEEEeccCccCC
Q 020454          289 ---TG---KLLGCFIGKCSGS----IRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       289 ---~~---~~~~~~~~~~~~~----v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                         ..   -++..+++| ...    |....|||..++|+++|.||+++
T Consensus       684 Dl~qnpliVPlK~L~gH-~~~~~~gVLd~~wHP~qpWLfsAGAd~tir  730 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRLRGH-EKTNDLGVLDTIWHPRQPWLFSAGADGTIR  730 (733)
T ss_pred             hhhcCCceEeeeeccCc-eeecccceEeecccCCCceEEecCCCceEE
Confidence               11   346778887 554    88889999999999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.3e-19  Score=148.65  Aligned_cols=257  Identities=13%  Similarity=0.142  Sum_probs=170.0

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeeccc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -++++..+|.+++||..++     +....+......   ..+.+  +++++.+ +++..++.|++||..+++....+.. 
T Consensus         3 ~~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~~~---~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-   71 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATL-----EVTRTFPVGQRP---RGITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-   71 (300)
T ss_pred             EEEEecCCCEEEEEECCCC-----ceEEEEECCCCC---CceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-
Confidence            3678889999999999876     344444332222   22333  3344455 5677889999999988877655442 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                             +.. +..+.+.+        +++.+++ +..++.+++||+....        .+....  ....+..++++|+
T Consensus        72 -------~~~-~~~~~~~~--------~g~~l~~~~~~~~~l~~~d~~~~~--------~~~~~~--~~~~~~~~~~~~d  125 (300)
T TIGR03866        72 -------GPD-PELFALHP--------NGKILYIANEDDNLVTVIDIETRK--------VLAEIP--VGVEPEGMAVSPD  125 (300)
T ss_pred             -------CCC-ccEEEECC--------CCCEEEEEcCCCCeEEEEECCCCe--------EEeEee--CCCCcceEEECCC
Confidence                   112 23344433        4455544 4568999999986432        233322  2335678999999


Q ss_pred             CCEEEEecCCC-eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCCCCCCce
Q 020454          174 EKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       174 ~~~l~sg~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~~~~~~~  251 (326)
                      +++++++..++ .+.+||.++++........          .....++|+|  ++++|+ ++..++.|++||+.+. +.+
T Consensus       126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~~s~--dg~~l~~~~~~~~~v~i~d~~~~-~~~  192 (300)
T TIGR03866       126 GKIVVNTSETTNMAHFIDTKTYEIVDNVLVD----------QRPRFAEFTA--DGKELWVSSEIGGTVSVIDVATR-KVI  192 (300)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCeEEEEEEcC----------CCccEEEECC--CCCEEEEEcCCCCEEEEEEcCcc-eee
Confidence            99999888765 5677899877665432211          1234678887  455664 5556999999999976 444


Q ss_pred             eEEeecC-------CceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe-ccC
Q 020454          252 MSFDFRE-------TPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GFL  322 (326)
Q Consensus       252 ~~~~~~~-------~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~-s~D  322 (326)
                      ..+..+.       .....++|+|++++++++ ..++.+.+||+++++.+..+. + ...+.+++|+|++++|+++ +.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~g~~l~~~~~~~  270 (300)
T TIGR03866       193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-V-GQRVWQLAFTPDEKYLLTTNGVS  270 (300)
T ss_pred             eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-e-CCCcceEEECCCCCEEEEEcCCC
Confidence            4443221       123568899999986654 456789999999988876654 2 4579999999999999876 456


Q ss_pred             cc
Q 020454          323 EA  324 (326)
Q Consensus       323 ~~  324 (326)
                      +.
T Consensus       271 ~~  272 (300)
T TIGR03866       271 ND  272 (300)
T ss_pred             Ce
Confidence            64

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=3.1e-21  Score=155.35  Aligned_cols=274  Identities=15%  Similarity=0.115  Sum_probs=186.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      --+++|+..|.|-+||+.+.......+ ..+..+..++..+-|+...   ...+++.+.||+|++-|++++.....+.. 
T Consensus       201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v-~~f~~hs~~Vs~l~F~P~n---~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-  275 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFGTQEKDKDGV-YLFTPHSGPVSGLKFSPAN---TSQIYSSSYDGTIRLQDFEGNISEEVLSL-  275 (498)
T ss_pred             eEEEEccCCCcEEEEecCCCCCccCce-EEeccCCccccceEecCCC---hhheeeeccCceeeeeeecchhhHHHhhc-
Confidence            458889999999999996431111222 2333333444434343332   23599999999999999976665333332 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           ......+.++.+..        .+..++.+..=|...+||++..+.       ....|.+. ...|..++++|..
T Consensus       276 -----~~d~~~fs~~d~~~--------e~~~vl~~~~~G~f~~iD~R~~~s-------~~~~~~lh-~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  276 -----DTDNIWFSSLDFSA--------ESRSVLFGDNVGNFNVIDLRTDGS-------EYENLRLH-KKKITSVALNPVC  334 (498)
T ss_pred             -----CccceeeeeccccC--------CCccEEEeecccceEEEEeecCCc-------cchhhhhh-hcccceeecCCCC
Confidence                 11223455555433        456788888888999999886542       23334433 4489999999976


Q ss_pred             -CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC---CCCCc
Q 020454          175 -KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---AQRRP  250 (326)
Q Consensus       175 -~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~---~~~~~  250 (326)
                       .+|||++.|++.+|||++.......     .-...+.|...|.+..|+|. ++ .|++.+.|..|+|||..   ....+
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs-~g-tl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPS-GG-TLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCC-CC-ceEeeccCCceEEeecccccccCCc
Confidence             7899999999999999986443222     01112345578999999996 45 49999999999999984   33345


Q ss_pred             eeEEeecCC-----ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE-EECCCCCEEEEecc
Q 020454          251 VMSFDFRET-----PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGF  321 (326)
Q Consensus       251 ~~~~~~~~~-----~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l-~~~p~~~~l~s~s~  321 (326)
                      ...+.....     ......|.|+..+|++|..-..|-|||-..++.+..+.......|.++ .|||-+..+++||.
T Consensus       408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~  484 (498)
T KOG4328|consen  408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN  484 (498)
T ss_pred             cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence            555543211     223448999999999999999999999999998888766534466665 79998876666653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=3.3e-21  Score=170.19  Aligned_cols=248  Identities=13%  Similarity=0.062  Sum_probs=184.5

Q ss_pred             EEeeeCCCCCeEEEEe--cCCcEEEEeccc----cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           57 ASIDDSQNDPLLAVAR--KNGLTDILNPLN----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        57 ~~~~~~~~~~~l~~g~--~dg~i~i~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ++.+-++++..+++|+  .||.++||+.+.    .+...............|.+.|.++.|.+        ++.+|++|+
T Consensus        17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~--------dG~~lAsGS   88 (942)
T KOG0973|consen   17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP--------DGSYLASGS   88 (942)
T ss_pred             EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC--------CCCeEeecc
Confidence            4445566777899999  999999998741    00000100011122346778999887766        778999999


Q ss_pred             cCCcEEEEEccccc--ccccc--------ccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454          131 TKGKASMRSIEVTK--VSAES--------SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       131 ~~g~v~i~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  200 (326)
                      +|..|.+|......  ..-++        ....+.++. .|...|..+.|+|++.+|++++.|++|.|||.++.+.+..+
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence            99999999987411  01111        112333333 47789999999999999999999999999999999888888


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee------cCCceEEEEecCCCCeEE
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------RETPIKAVAEEPDSFNIY  274 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~~i~~v~~s~~~~~l~  274 (326)
                      .+|.         ..|.++.|.|  -|++||+-+.|++|++|++... ...+.+..      ....+..+.|||||.+|+
T Consensus       168 ~~H~---------s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  168 RGHQ---------SLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             eccc---------ccccceEECC--ccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence            8876         4577899998  5779999999999999997754 33444432      234678899999999999


Q ss_pred             EEcCC----CcEEEEECCCCeEEEEEcceecceEEEEEECCC-----CC------------EEEEeccCccCC
Q 020454          275 IGNGS----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT-----LP------------IIASCGFLEAAS  326 (326)
Q Consensus       275 ~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~-----~~------------~l~s~s~D~~~~  326 (326)
                      +...-    ..+.|.+-.+.+.-..+-|| .+++..+.|+|.     ..            ++|+||.|+..+
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             chhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence            76542    35888888777878889998 999999999972     22            789999999764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=6e-21  Score=147.50  Aligned_cols=279  Identities=15%  Similarity=0.169  Sum_probs=201.3

Q ss_pred             eeeeeecCcccEEEEEecCCc--CC--Cc---ceeeeccCCCCCceEEEEEee-----eCCCCCeEEEEecCCcEEEEec
Q 020454           15 LRALTFDSLGLIKVIEARGEH--GG--VP---KVVERWGDPHSSNCVLAASID-----DSQNDPLLAVARKNGLTDILNP   82 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~--~~--~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~g~~dg~i~i~~~   82 (326)
                      -.+++-+++..+++|++....  .+  ..   +....+. -.+...+...+|.     ..++..++++.+.+.-|++||.
T Consensus        62 SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda  140 (406)
T KOG2919|consen   62 SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR-YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA  140 (406)
T ss_pred             ceEEeecccCeeeEEecChhhcccCCCCccccccceeEE-eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence            678999999999999986541  11  11   1111111 1344566667765     4566779999999999999999


Q ss_pred             cccceeeeecccCCCCCCCCCCCe---eeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454           83 LNGDLRVAISNAGDSGAQPEDDGI---VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i---~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      .+|++...++.+      .+...+   .++.+.         +++.-+.++....|+++|+......... -.++..=+.
T Consensus       141 ftG~lraSy~~y------dh~de~taAhsL~Fs---------~DGeqlfaGykrcirvFdt~RpGr~c~v-y~t~~~~k~  204 (406)
T KOG2919|consen  141 FTGKLRASYRAY------DHQDEYTAAHSLQFS---------PDGEQLFAGYKRCIRVFDTSRPGRDCPV-YTTVTKGKF  204 (406)
T ss_pred             cccccccchhhh------hhHHhhhhheeEEec---------CCCCeEeecccceEEEeeccCCCCCCcc-hhhhhcccc
Confidence            999998888765      222222   336653         3455566667888999998543210000 000000011


Q ss_pred             cCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CC
Q 020454          160 CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH  237 (326)
Q Consensus       160 ~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg  237 (326)
                      ...+-|.+++++|-. +.++.|+....+-||.-..+++++.+.+|.         ..|+.+.|.+  +|+.|++|.. |-
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------gGvThL~~~e--dGn~lfsGaRk~d  273 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQWCE--DGNKLFSGARKDD  273 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC---------CCeeeEEecc--CcCeecccccCCC
Confidence            224568899999966 699999999999999988888888877765         6689999998  5668888865 77


Q ss_pred             eEEEEeCCCCCCceeEEeecCC-ceEEE--EecCCCCeEEEEcCCCcEEEEECCC-CeEEEEEcceecceEEEEEECCCC
Q 020454          238 QVRLYDTSAQRRPVMSFDFRET-PIKAV--AEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~-~i~~v--~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      .|..||+|..+.++..+..|.. .-..|  ...|++++|++|+.||.|++||+++ +..+..+..+ ...++.++++|--
T Consensus       274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvslnP~m  352 (406)
T KOG2919|consen  274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSLNPIM  352 (406)
T ss_pred             eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceecCccc
Confidence            9999999987788887776544 22223  5568899999999999999999998 7777778887 9999999999999


Q ss_pred             CEEEEeccC
Q 020454          314 PIIASCGFL  322 (326)
Q Consensus       314 ~~l~s~s~D  322 (326)
                      +++|+++.-
T Consensus       353 pilatssGq  361 (406)
T KOG2919|consen  353 PILATSSGQ  361 (406)
T ss_pred             ceeeeccCc
Confidence            999998754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.3e-23  Score=176.12  Aligned_cols=215  Identities=19%  Similarity=0.256  Sum_probs=175.3

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~  147 (326)
                      ++.....-.+++||.....              .|...+.++....        ....++.|+.+-.+.+|.+.......
T Consensus         7 ~m~~~~~t~Lr~~~~~~~~--------------~hsaav~~lk~~~--------s~r~~~~Gg~~~k~~L~~i~kp~~i~   64 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTREFV--------------AHSAAVGCLKIRK--------SSRSLVTGGEDEKVNLWAIGKPNAIT   64 (825)
T ss_pred             cceeeeeeccccccchhhh--------------hhhhhhceeeeec--------cceeeccCCCceeeccccccCCchhh
Confidence            4455555667788864221              2223444444311        44578889999999999877654221


Q ss_pred             ccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454          148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (326)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  227 (326)
                              .+. .+..+|.++.|++...+|+.|+.+|+|++||++..+.+..+.+|..+         +.++.|+|  -+
T Consensus        65 --------S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~---------~~sv~f~P--~~  124 (825)
T KOG0267|consen   65 --------SLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN---------ITSVDFHP--YG  124 (825)
T ss_pred             --------eee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC---------cceeeecc--ce
Confidence                    122 35779999999999999999999999999999999988888887744         45778999  45


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (326)
Q Consensus       228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  307 (326)
                      .+++.|+.|+.+++||.+.. .+.+.+..|...+..+.|+|+|++++.|++|..++|||+..|+++..|+.| .+.|.++
T Consensus       125 ~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sl  202 (825)
T KOG0267|consen  125 EFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSL  202 (825)
T ss_pred             EEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-ccccccc
Confidence            58899999999999999965 678999999999999999999999999999999999999999999999998 9999999


Q ss_pred             EECCCCCEEEEeccCccCC
Q 020454          308 ARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       308 ~~~p~~~~l~s~s~D~~~~  326 (326)
                      .|+|..-++++||.|+.++
T Consensus       203 e~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  203 EFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             ccCchhhhhccCCCCceee
Confidence            9999999999999999763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1e-22  Score=159.39  Aligned_cols=196  Identities=14%  Similarity=0.224  Sum_probs=142.0

Q ss_pred             CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  179 (326)
                      ..|.+.|.+++..+.+       -..+++|+.||.|++|++.....        ++.++ .+.+.|..+.++.  ..+++
T Consensus        63 ~gHrdGV~~lakhp~~-------ls~~aSGs~DG~VkiWnlsqR~~--------~~~f~-AH~G~V~Gi~v~~--~~~~t  124 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNK-------LSTVASGSCDGEVKIWNLSQREC--------IRTFK-AHEGLVRGICVTQ--TSFFT  124 (433)
T ss_pred             cccccccchhhcCcch-------hhhhhccccCceEEEEehhhhhh--------hheee-cccCceeeEEecc--cceEE
Confidence            3667778888875532       25799999999999999987542        22222 1234455555543  33344


Q ss_pred             ecCCCeEEEEE--------------------------------------CCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          180 GGKGVEVNVWD--------------------------------------LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       180 g~~d~~i~iwd--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                      +|.|.+|+.|-                                      .+...++..+.-.         ...+.++.|
T Consensus       125 vgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG---------~Dti~svkf  195 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWG---------ADSISSVKF  195 (433)
T ss_pred             ecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecC---------CCceeEEec
Confidence            45555555554                                      4433333332211         134788899


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEccee
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKC  300 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~  300 (326)
                      +|.. ...|++|..|+.|.+||+|.. .|++.+... ..-+.++|+|.+--+++|++|..++.||++.. +++..+.+| 
T Consensus       196 NpvE-TsILas~~sDrsIvLyD~R~~-~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-  271 (433)
T KOG0268|consen  196 NPVE-TSILASCASDRSIVLYDLRQA-SPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-  271 (433)
T ss_pred             CCCc-chheeeeccCCceEEEecccC-Cccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhccc-
Confidence            9974 448999999999999999987 777776543 55688999998878889999999999999975 567788898 


Q ss_pred             cceEEEEEECCCCCEEEEeccCccCC
Q 020454          301 SGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       301 ~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      ...|.+++|+|.|+-+++||.|++++
T Consensus       272 vsAV~dVdfsptG~EfvsgsyDksIR  297 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGSYDKSIR  297 (433)
T ss_pred             ceeEEEeccCCCcchhccccccceEE
Confidence            99999999999999999999999863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=5e-21  Score=153.59  Aligned_cols=246  Identities=15%  Similarity=0.183  Sum_probs=179.4

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceee--------------eccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEE
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVE--------------RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTD   78 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~   78 (326)
                      +..-++.|..+-.|.|||+.-.+.-.+.+..              ..+...+...+++++|... ...+||+|+.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEE
Confidence            3467899999999999998654322221110              1111233444444544332 234799999999999


Q ss_pred             EEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE
Q 020454           79 ILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN  158 (326)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~  158 (326)
                      +||+.+++....+.        .+.+.|.++.|++.       ....+++|+.|+++.+.|.+...       ..-+.|.
T Consensus       270 lWD~~~g~p~~s~~--------~~~k~Vq~l~wh~~-------~p~~LLsGs~D~~V~l~D~R~~~-------~s~~~wk  327 (463)
T KOG0270|consen  270 LWDVDTGKPKSSIT--------HHGKKVQTLEWHPY-------EPSVLLSGSYDGTVALKDCRDPS-------NSGKEWK  327 (463)
T ss_pred             EEEcCCCCcceehh--------hcCCceeEEEecCC-------CceEEEeccccceEEeeeccCcc-------ccCceEE
Confidence            99999999877776        45688999998773       34689999999999999987522       2345666


Q ss_pred             ccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454          159 VCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       159 ~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                      .  .+.|..++|+|.. ..++++..||+++-+|+|+. +++++++.|.         ..|+++++++...+ ++++++.|
T Consensus       328 ~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd---------~~ISgl~~n~~~p~-~l~t~s~d  395 (463)
T KOG0270|consen  328 F--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD---------DEISGLSVNIQTPG-LLSTASTD  395 (463)
T ss_pred             e--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc---------CCcceEEecCCCCc-ceeecccc
Confidence            5  5689999999865 77888899999999999985 8899988876         45788898876444 89999999


Q ss_pred             CeEEEEeCCCCC-CceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEE
Q 020454          237 HQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLL  293 (326)
Q Consensus       237 g~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~  293 (326)
                      +.|++|++.... +.+......-+...|.++.|+- -.++.|+..+.++|||+.+...+
T Consensus       396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            999999987431 1233322333456777788874 45668888889999999887654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=8.6e-21  Score=160.04  Aligned_cols=217  Identities=13%  Similarity=0.167  Sum_probs=171.2

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeee-eecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~  145 (326)
                      .+++++.||++++|+-..++.+.....      +.+.+-|.. +.+.+       ++...+++++.|..+.+|...... 
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~------~~~~g~i~~~i~y~e-------~~~~~l~~g~~D~~i~v~~~~~~~-   92 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAF------EGPKGFIANSICYAE-------SDKGRLVVGGMDTTIIVFKLSQAE-   92 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceec------ccCcceeeccceecc-------ccCcceEeecccceEEEEecCCCC-
Confidence            589999999999999876666553332      133455544 44433       145679999999999999876544 


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  225 (326)
                             ++..+. .|+..|.+++...++. +++|+.|.++++|-..  +....+++|+         ..|-++++.|. 
T Consensus        93 -------P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~---------asVWAv~~l~e-  151 (745)
T KOG0301|consen   93 -------PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHT---------ASVWAVASLPE-  151 (745)
T ss_pred             -------chhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcc---------hheeeeeecCC-
Confidence                   333333 4677899999887777 8899999999999864  4444566655         44668888874 


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE
Q 020454          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~  305 (326)
                       + .+++|+.|++|++|.-.   ..+++|.+|..-|+.+++-+++ .+++++.||.|++|++ +|+.+.++.+| ..-|.
T Consensus       152 -~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh-tn~vY  223 (745)
T KOG0301|consen  152 -N-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH-TNFVY  223 (745)
T ss_pred             -C-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc-ceEEE
Confidence             3 89999999999999864   4578999999999999997654 6778899999999999 78999999998 99999


Q ss_pred             EEEECCCCCEEEEeccCccCC
Q 020454          306 SIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      ++...+++..++|+|.||+++
T Consensus       224 sis~~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  224 SISMALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             EEEecCCCCeEEEecCCceEE
Confidence            999878888999999999863

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.8e-19  Score=130.65  Aligned_cols=236  Identities=14%  Similarity=0.111  Sum_probs=169.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee--CCCCCeEEEEec-CCcEEEEeccccceeeee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARK-NGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~   91 (326)
                      -.++||+.|..||+...+.......-.-..+..+...  +-.++|.+  ...+.+|++++. |-.|.+-|...|+-...+
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgt--irdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGT--IRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCc--eeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            4578899999999987664411111111233333333  33455543  344455665543 455666677677655554


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc------CCCce
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTI  165 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~v  165 (326)
                      .        .|.+.|..+..|+         +-.+++++.|.+|++||++....        ++..+..      ....|
T Consensus       180 s--------ghtghilalyswn---------~~m~~sgsqdktirfwdlrv~~~--------v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  180 S--------GHTGHILALYSWN---------GAMFASGSQDKTIRFWDLRVNSC--------VNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             c--------CCcccEEEEEEec---------CcEEEccCCCceEEEEeeeccce--------eeeccCcccCCCccccee
Confidence            4        6778898877654         45899999999999999886542        2222211      12468


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      ..+++.|.|++|++|-.|....+||++.++++..+..|.         ..|.++.|+|.  ..++++|+.|..|++-|+.
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs---------adir~vrfsp~--a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS---------ADIRCVRFSPG--AHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc---------cceeEEEeCCC--ceEEEEecccceEEEeecc
Confidence            999999999999999999999999999999999988776         45789999995  4599999999999999987


Q ss_pred             CC---CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          246 AQ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       246 ~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ..   +-++.....|...+-.+.|+|+.--+++.+.|.++.+|-+.
T Consensus       304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            32   23455555677777777999999899999999999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=9.8e-21  Score=144.63  Aligned_cols=205  Identities=19%  Similarity=0.160  Sum_probs=153.7

Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc--ccccccceEEEEEcc----CCCceEEEEEcC-C
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVC----ASGTIAFSKVDI-S  173 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~  173 (326)
                      .|.+.|..|..-+.       .+.++++|+.||.+.+||+.....  .++.-...+.+....    |.-.|..+.|-| +
T Consensus        41 ~HgGsvNsL~id~t-------egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLT-------EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             cCCCccceeeeccc-------cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence            55678888876442       357899999999999999986442  222112222221111    223588888888 4


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      ..++.+++-|.++++||..+.+....++-          +..|++-+++|-.- ..++|+|..+-+|++-|+.++ ...+
T Consensus       114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~m----------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH  182 (397)
T KOG4283|consen  114 TGMFTSSSFDHTLKVWDTNTLQEAVDFKM----------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSH  182 (397)
T ss_pred             CceeecccccceEEEeecccceeeEEeec----------CceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-ccee
Confidence            57888999999999999998776555432          24466777777533 458889999999999999988 6789


Q ss_pred             EEeecCCceEEEEecCCCCeE-EEEcCCCcEEEEECCCC-eE--------------EEEEcceecceEEEEEECCCCCEE
Q 020454          253 SFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTG-KL--------------LGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l-~~g~~dg~v~iwd~~~~-~~--------------~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                      ++.+|...|.+|.|+|...++ ++|+.||.|++||++.. -+              ++.-..| .+.|++++|..++.++
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTSDARYL  261 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecccchhh
Confidence            999999999999999997765 59999999999999853 11              1112355 8899999999999999


Q ss_pred             EEeccCcc
Q 020454          317 ASCGFLEA  324 (326)
Q Consensus       317 ~s~s~D~~  324 (326)
                      ++++.|..
T Consensus       262 ~~~gtd~r  269 (397)
T KOG4283|consen  262 ASCGTDDR  269 (397)
T ss_pred             hhccCccc
Confidence            99998864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.8e-20  Score=148.60  Aligned_cols=229  Identities=14%  Similarity=0.127  Sum_probs=163.3

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccc-eeeeecc------------cCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGD-LRVAISN------------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~-~~~~~~~------------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      ...++|+|+|+.|..|.|||+.=-. ....+..            ......+.|...+..|.+.. .      ..+.|++
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~-~------~~nVLaS  261 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR-N------FRNVLAS  261 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc-c------cceeEEe
Confidence            3456799999999999999985111 1111100            00011124556666666422 1      3568999


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCce---eeeeecCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE---KIWTAKPPP  204 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~  204 (326)
                      ++.|.+|.+||++..+..        .... .+.++|.+++|+|.. .+|++|+.|+++.+.|.+...   ..++     
T Consensus       262 gsaD~TV~lWD~~~g~p~--------~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-----  327 (463)
T KOG0270|consen  262 GSADKTVKLWDVDTGKPK--------SSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-----  327 (463)
T ss_pred             cCCCceEEEEEcCCCCcc--------eehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-----
Confidence            999999999999876532        2222 457899999999975 899999999999999998421   1222     


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEE
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLA  283 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~  283 (326)
                             ....|-.++|.|.. ...+++++.||+|+-+|+|...+++.+++.|+.+|.++++++. -.++++++.|+.|+
T Consensus       328 -------~~g~VEkv~w~~~s-e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  328 -------FDGEVEKVAWDPHS-ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             -------eccceEEEEecCCC-ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence                   22457788999874 4488999999999999999887899999999999999999986 45677999999999


Q ss_pred             EEECCCCeE--EEEEcceecceEEEEEECCCCCE-EEEec
Q 020454          284 SVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPI-IASCG  320 (326)
Q Consensus       284 iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~-l~s~s  320 (326)
                      +|++.....  ++.-.-. .+...|.++.|+-.+ ++.||
T Consensus       400 lw~~~~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  400 LWKFDVDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             EEeecCCCCccccccccc-ccceeecccCCCcceEEEecC
Confidence            999975433  2211111 445678888887765 44444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.8e-20  Score=148.27  Aligned_cols=270  Identities=13%  Similarity=0.156  Sum_probs=191.3

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEEecCCcEEEEeccccceeeeeccc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+++++.||.+++|.+.+. ...  .++...-...+  +-.++|.+  .+. .+++++.......||+++.++.+.-...
T Consensus       227 lllvaG~d~~lrifqvDGk-~N~--~lqS~~l~~fP--i~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~  299 (514)
T KOG2055|consen  227 LLLVAGLDGTLRIFQVDGK-VNP--KLQSIHLEKFP--IQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY  299 (514)
T ss_pred             eEEEecCCCcEEEEEecCc-cCh--hheeeeeccCc--cceeeecC--CCceEEEecccceEEEEeeccccccccccCCC
Confidence            4899999999999999976 211  11121111222  22334443  333 6888999999999999888874433322


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                      .     ..+..+......+        ++++|+..+..|.|.+......+.        +..+.  -.+.|..+.|+.++
T Consensus       300 g-----~e~~~~e~FeVSh--------d~~fia~~G~~G~I~lLhakT~el--------i~s~K--ieG~v~~~~fsSds  356 (514)
T KOG2055|consen  300 G-----VEEKSMERFEVSH--------DSNFIAIAGNNGHIHLLHAKTKEL--------ITSFK--IEGVVSDFTFSSDS  356 (514)
T ss_pred             C-----cccchhheeEecC--------CCCeEEEcccCceEEeehhhhhhh--------hheee--eccEEeeEEEecCC
Confidence            1     1112333333323        667999999999999887655442        22222  26789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC-----CCC
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----QRR  249 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~-----~~~  249 (326)
                      +.|++.+.+|.|.+||++...++......          ..|....+.+..++.+||+|+..|.|.|||..+     ..+
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~----------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSCLHRFVDD----------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcceEEEEeec----------CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence            99988899999999999998777665432          223444444444677999999999999999542     235


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcC--CCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCCCEEEEeccCccC
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~--dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |+..+..-...|++++|+++++.|+.++.  ...+++-.+.+-.....|+..  ..+.|+|++|+|.+.+||.|-.+|.+
T Consensus       427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv  506 (514)
T KOG2055|consen  427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV  506 (514)
T ss_pred             chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence            77777777789999999999999986664  567999999887776666531  15679999999999999999988865

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=9.2e-21  Score=147.41  Aligned_cols=231  Identities=15%  Similarity=0.201  Sum_probs=166.7

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~  145 (326)
                      ..+|++..+|+|++||..+++.+..+...        ...+.++.+....      ....+++|+.||.|++||++....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~--------~~~~N~vrf~~~d------s~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP--------PATTNGVRFISCD------SPHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC--------CCcccceEEecCC------CCCeeEEeccCCeEEEEEeecchh
Confidence            46999999999999999999988888743        2344445544311      245799999999999999986553


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC----CCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeE
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      .      ....|....+.+..+++....++.+++|..    +..+.+||++..+. +..+..        .|...|+++.
T Consensus       107 ~------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--------SH~DDVT~lr  172 (376)
T KOG1188|consen  107 S------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--------SHNDDVTQLR  172 (376)
T ss_pred             h------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--------hccCcceeEE
Confidence            2      233444444567889998888899988754    56699999998766 333221        2346699999


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCC--CceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCC-------
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG-------  290 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~-------  290 (326)
                      |+|+ +.++|++|+.||.|.+||+....  .++...-.+...|..+.|..++ +.|.+-+......+|+++.+       
T Consensus       173 FHP~-~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  173 FHPS-DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             ecCC-CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            9997 56699999999999999988432  2333343566778888998775 45778888888999987652       


Q ss_pred             ------------------------------------------------------eEEEEEcceecceEEEEEECCCCCEE
Q 020454          291 ------------------------------------------------------KLLGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       291 ------------------------------------------------------~~~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                                                                            +.+..+.+++..-|+++.|...+.++
T Consensus       252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l  331 (376)
T KOG1188|consen  252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL  331 (376)
T ss_pred             CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence                                                                  11223344336667888888788899


Q ss_pred             EEeccCccC
Q 020454          317 ASCGFLEAA  325 (326)
Q Consensus       317 ~s~s~D~~~  325 (326)
                      .|||.||.+
T Consensus       332 ~TGGEDG~l  340 (376)
T KOG1188|consen  332 YTGGEDGLL  340 (376)
T ss_pred             eccCCCceE
Confidence            999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.6e-19  Score=159.13  Aligned_cols=278  Identities=15%  Similarity=0.173  Sum_probs=187.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeEEEEecCCcEEEEecc-cc----cee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NG----DLR   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~-~~----~~~   88 (326)
                      -.++++++.-.|+|||.+.+     +....|..... ...+..+.+....+..++++|+.||.|+||+-- ++    +++
T Consensus      1077 p~i~~ad~r~~i~vwd~e~~-----~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKG-----RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred             ceeEEcCCcceEEEEecccC-----ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence            45788888999999999987     55555554333 345556777777777799999999999999642 22    222


Q ss_pred             eeecccCCC-CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454           89 VAISNAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (326)
Q Consensus        89 ~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  167 (326)
                      .....+... ....+.+.+.  . |..       ..+.|++++.-..|+|||.+.+...        .-.-......+++
T Consensus      1152 Taw~~Ls~~~~~~r~~~~v~--d-WqQ-------~~G~Ll~tGd~r~IRIWDa~~E~~~--------~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVV--D-WQQ-------QSGHLLVTGDVRSIRIWDAHKEQVV--------ADIPYGSSTLVTA 1213 (1387)
T ss_pred             EeeccccccCccCCCCCeee--e-hhh-------hCCeEEecCCeeEEEEEecccceeE--------eecccCCCcccee
Confidence            222221110 0012223222  2 222       4567888888899999998765522        1112223456777


Q ss_pred             EEEcCC-CCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          168 SKVDIS-EKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       168 ~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      +..+.. |+.++.|..||.|++||.+...+   +...+.|...       ..|..+.+.+...+ .|++|+.||.|++||
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~-------~~Iv~~slq~~G~~-elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV-------EPIVHLSLQRQGLG-ELVSGSQDGDIQLLD 1285 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc-------ccceeEEeecCCCc-ceeeeccCCeEEEEe
Confidence            765543 69999999999999999886432   3344444321       22778888875455 799999999999999


Q ss_pred             CCCC-CCceeEEeec---CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc------ceecceEEEEEECCCC
Q 020454          244 TSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTL  313 (326)
Q Consensus       244 ~~~~-~~~~~~~~~~---~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~p~~  313 (326)
                      +|.. .....++..|   .+..+++..+++...+|+|+. +.|+||++. |+.+..++      +...+.+.+++|||..
T Consensus      1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred             cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh
Confidence            9973 2222233332   125999999999999999999 899999986 44433322      2235678999999999


Q ss_pred             CEEEEeccCccC
Q 020454          314 PIIASCGFLEAA  325 (326)
Q Consensus       314 ~~l~s~s~D~~~  325 (326)
                      ..+|.|+.|..+
T Consensus      1364 ~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1364 LLLAAGSADSTV 1375 (1387)
T ss_pred             HhhhhccCCceE
Confidence            999999988775

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=1.3e-19  Score=151.95  Aligned_cols=157  Identities=16%  Similarity=0.120  Sum_probs=119.7

Q ss_pred             eEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          165 IAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       165 v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      |+.+.|+| +...||+++.|+.|++|.+..+........ +...+ -.+...|+++.|+|-. .+.|++++.|-+|++||
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t-Pe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT-PEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIELWD  706 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC-cceee-ecccceEEEEEecchh-hhHhhhhhccceeeeee
Confidence            77888888 458899999999999999875432111100 00000 1133569999999964 34899999999999999


Q ss_pred             CCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe-EEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      +++. .....+.+|...|..++|||+|+.+++-+.||+|++|+.++++ +++.-++.....--.|.|.-++++|+..|.|
T Consensus       707 l~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  707 LANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             hhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            9987 4567888999999999999999999999999999999998764 3444444323344467888899999999999


Q ss_pred             ccC
Q 020454          323 EAA  325 (326)
Q Consensus       323 ~~~  325 (326)
                      +..
T Consensus       786 k~S  788 (1012)
T KOG1445|consen  786 KSS  788 (1012)
T ss_pred             ccc
Confidence            753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=1e-17  Score=138.74  Aligned_cols=250  Identities=12%  Similarity=0.079  Sum_probs=160.3

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEE-EecCCcEEEEeccccceeeeecccC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAV-ARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      ++++..++.|++||..++     +....+...... .  .+.+  ++.++.+++ +..++.|++||+.+++.+..+..  
T Consensus        46 ~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~-~--~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--  113 (300)
T TIGR03866        46 YVCASDSDTIQVIDLATG-----EVIGTLPSGPDP-E--LFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--  113 (300)
T ss_pred             EEEECCCCeEEEEECCCC-----cEEEeccCCCCc-c--EEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--
Confidence            467788999999999876     333333322221 1  2333  344555554 45689999999987766555432  


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC-cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                             ...+.++.+.+        ++..++++..++ .+.+|+.....        .+....  .......+.|+|++
T Consensus       114 -------~~~~~~~~~~~--------dg~~l~~~~~~~~~~~~~d~~~~~--------~~~~~~--~~~~~~~~~~s~dg  168 (300)
T TIGR03866       114 -------GVEPEGMAVSP--------DGKIVVNTSETTNMAHFIDTKTYE--------IVDNVL--VDQRPRFAEFTADG  168 (300)
T ss_pred             -------CCCcceEEECC--------CCCEEEEEecCCCeEEEEeCCCCe--------EEEEEE--cCCCccEEEECCCC
Confidence                   02244455544        556777777665 45666754322        111111  23345778999999


Q ss_pred             CEEE-EecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCCCcee
Q 020454          175 KFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       175 ~~l~-sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      ++|+ ++..++.|++||+++++.+..+........  ........++|+|  +++++ ++...++.+.+||++++ +.+.
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~s~--dg~~~~~~~~~~~~i~v~d~~~~-~~~~  243 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH--PEAVQPVGIKLTK--DGKTAFVALGPANRVAVVDAKTY-EVLD  243 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc--cccCCccceEECC--CCCEEEEEcCCCCeEEEEECCCC-cEEE
Confidence            8775 445689999999998876655432211100  0011234677887  44454 44456778999999876 4344


Q ss_pred             EEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEcceecceEEEEEECC
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      .+ .+...+.+++|+|+|++|+++ ..+|.|++||+++++++.+++.  ....+.|+++|
T Consensus       244 ~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~  300 (300)
T TIGR03866       244 YL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP  300 (300)
T ss_pred             EE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence            33 344578999999999999876 4689999999999999998874  34558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=8.5e-20  Score=151.82  Aligned_cols=244  Identities=16%  Similarity=0.129  Sum_probs=175.2

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+.+++..  ..+.+|++|+.||+|+||.+.++..+..+..-         +.|.+++|.+.       .+..++++
T Consensus       399 Htg~Vr~iSvd--p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~-------~~~~vLAv  460 (733)
T KOG0650|consen  399 HTGLVRSISVD--PSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPL-------SDLCVLAV  460 (733)
T ss_pred             cCCeEEEEEec--CCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCC-------CCceeEEE
Confidence            33344445444  45669999999999999999999998887752         57888886542       23345555


Q ss_pred             ecCCcEEEEEcccccc----------cc----ccccceEEEEEc--------------cCCCceEEEEEcCCCCEEEEec
Q 020454          130 TTKGKASMRSIEVTKV----------SA----ESSCSTVKSWNV--------------CASGTIAFSKVDISEKFSLFGG  181 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~----------~~----~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~sg~  181 (326)
                      ...+.+.+.+-.....          .+    ...+..+..|.-              .+...|..+.||..|.||++..
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            5555455554322210          00    112233444442              3455799999999999999866


Q ss_pred             CC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454          182 KG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (326)
Q Consensus       182 ~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  258 (326)
                      .+   ..|.|+++...+...-++.         ....|.++.|+|...  +|++++ ...|+|||+..+ ..++.+....
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~k---------skG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kq-elvKkL~tg~  607 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRK---------SKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQ-ELVKKLLTGS  607 (733)
T ss_pred             cCCCcceEEEEecccccccCchhh---------cCCceeEEEecCCCc--eEEEEe-ccceEEEehhHH-HHHHHHhcCC
Confidence            54   4588888875443222211         113478999999643  677776 578999999865 5677777777


Q ss_pred             CceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..|..++.+|.|..|+.|+.|+.+..||+.-. ++.++++.| ...|++++||+.-+++++|+.||++
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv  674 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTV  674 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcE
Confidence            89999999999999999999999999999854 566677777 9999999999999999999999976

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=4.1e-19  Score=135.44  Aligned_cols=198  Identities=15%  Similarity=0.116  Sum_probs=146.2

Q ss_pred             CCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEE-EEccCCCceEEEEEcC--CCCEEEEe
Q 020454          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNVCASGTIAFSKVDI--SEKFSLFG  180 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~sg  180 (326)
                      +.|.++.+-+        +..++++-. +..|.+|+++.......    .+.. -........++-+|+|  +++.+++ 
T Consensus       124 g~i~cvew~P--------ns~klasm~-dn~i~l~~l~ess~~va----ev~ss~s~e~~~~ftsg~WspHHdgnqv~t-  189 (370)
T KOG1007|consen  124 GKINCVEWEP--------NSDKLASMD-DNNIVLWSLDESSKIVA----EVLSSESAEMRHSFTSGAWSPHHDGNQVAT-  189 (370)
T ss_pred             CceeeEEEcC--------CCCeeEEec-cCceEEEEcccCcchhe----eecccccccccceecccccCCCCccceEEE-
Confidence            5778888655        444555554 89999999876442100    0000 0011234567777887  6788877 


Q ss_pred             cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (326)
Q Consensus       181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  260 (326)
                      ..|+++..||+++.+....+....        ...|..+.|.|+.. .+|++|+.||.|+|||.|..+.|+.++..|...
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW  260 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAH--------GQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW  260 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhh--------cceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence            468899999999887766654322        23488899999754 489999999999999999888899999999999


Q ss_pred             eEEEEecCC-CCeEEEEcCCCcEEEEECCC-----------------------------CeEEEEEcceecceEEEEEEC
Q 020454          261 IKAVAEEPD-SFNIYIGNGSGDLASVDIRT-----------------------------GKLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       261 i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~-----------------------------~~~~~~~~~~~~~~v~~l~~~  310 (326)
                      +.+|.|+|. .++|++|+.|..|.+|...+                             .-.+.+|..| +..|.+++|+
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWS  339 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWS  339 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeec
Confidence            999999997 56777999999999997543                             1134567777 9999999999


Q ss_pred             CCCCE-EEEeccCccC
Q 020454          311 PTLPI-IASCGFLEAA  325 (326)
Q Consensus       311 p~~~~-l~s~s~D~~~  325 (326)
                      ...++ +|+-|+||.+
T Consensus       340 sadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  340 SADPWIFASLSYDGRV  355 (370)
T ss_pred             cCCCeeEEEeccCceE
Confidence            87774 6677999863

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=146.46  Aligned_cols=234  Identities=15%  Similarity=0.134  Sum_probs=173.8

Q ss_pred             ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEEEEe
Q 020454           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCT  130 (326)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~  130 (326)
                      ..+..+.|  .+..++|++++.||+++||.+. |+.-..++.+.     -...+|....+.+        .+. .+++++
T Consensus       214 ~~I~sv~F--Hp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l~~fPi~~a~f~p--------~G~~~i~~s~  277 (514)
T KOG2055|consen  214 GGITSVQF--HPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----LEKFPIQKAEFAP--------NGHSVIFTSG  277 (514)
T ss_pred             CCceEEEe--cCCCceEEEecCCCcEEEEEec-CccChhheeee-----eccCccceeeecC--------CCceEEEecc
Confidence            34444555  4556689999999999999884 44333333321     2335777777655        344 788899


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      ....++.||+......      .++.........+..+.+++++++|+..|..|.|.+....+++.+..++-        
T Consensus       278 rrky~ysyDle~ak~~------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------  343 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVT------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------  343 (514)
T ss_pred             cceEEEEeeccccccc------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--------
Confidence            9999999998654311      11111111234678889999999999999999999999888887766543        


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC-ceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-PIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                        +..|+.+.|+.  +++.|++++.+|.|.+||++.. .+++.+....+ .-+++|.++++.++|+|+..|.|.|||.++
T Consensus       344 --eG~v~~~~fsS--dsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  344 --EGVVSDFTFSS--DSKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             --ccEEeeEEEec--CCcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence              35688999984  6778999999999999999976 66777764322 346778889999999999999999999764


Q ss_pred             ------CeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          290 ------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       290 ------~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                            .+++..+..- ...|++|.|+|+.++||.||.
T Consensus       419 ~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  419 CFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             hhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhh
Confidence                  4667777663 789999999999999998874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=4.3e-18  Score=139.13  Aligned_cols=265  Identities=15%  Similarity=0.154  Sum_probs=181.7

Q ss_pred             ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCC
Q 020454           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA   99 (326)
Q Consensus        20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~   99 (326)
                      -+.+..+.|||...+..... +      +...+.++.+.|-+  .++-|++....|.+..|+++.+.+.+....++.   
T Consensus       176 ~s~~h~lSVWdWqk~~~~~~-v------k~sne~v~~a~FHP--td~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek---  243 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKKAKLGP-V------KTSNEVVFLATFHP--TDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK---  243 (626)
T ss_pred             CCCccccchhhchhhhccCc-c------eeccceEEEEEecc--CCCcEEEEeCCceEEEEEccCCceEEEeecccc---
Confidence            34456788999887621111 1      23344555555543  333467777779999999988887766655442   


Q ss_pred             CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  179 (326)
                       .+...|.++.+.+         ++.++++.++|.|.||+.....        ..+.-. .|++.|.++..-.+|.+| +
T Consensus       244 -~ekk~Vl~v~F~e---------ngdviTgDS~G~i~Iw~~~~~~--------~~k~~~-aH~ggv~~L~~lr~Gtll-S  303 (626)
T KOG2106|consen  244 -REKKFVLCVTFLE---------NGDVITGDSGGNILIWSKGTNR--------ISKQVH-AHDGGVFSLCMLRDGTLL-S  303 (626)
T ss_pred             -ccceEEEEEEEcC---------CCCEEeecCCceEEEEeCCCce--------EEeEee-ecCCceEEEEEecCccEe-e
Confidence             2336788888644         5679999999999999964332        222222 578899999999888876 4


Q ss_pred             ecCCCeEEEEECCCce-----------eeee-ecCCCC----------------CC---CCcCCCCceeeeEEeecCCCc
Q 020454          180 GGKGVEVNVWDLDKCE-----------KIWT-AKPPPK----------------NS---LGIFTPTWFTSAAFLSIDDHR  228 (326)
Q Consensus       180 g~~d~~i~iwd~~~~~-----------~~~~-~~~~~~----------------~~---~~~~~~~~v~~~~~~p~~~~~  228 (326)
                      |++|..|..||-.-.+           .+.. +.+...                ..   ....+....-.++.+|.+  +
T Consensus       304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~  381 (626)
T KOG2106|consen  304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--N  381 (626)
T ss_pred             cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--h
Confidence            9999999999932111           0000 111100                00   000111223355667743  4


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEE
Q 020454          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA  308 (326)
Q Consensus       229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~  308 (326)
                      ++++++.|+.+++|+  . .+++.+.... .+..++.|+|.| .++.|+..|...+.|.++..++. +... ..+++.++
T Consensus       382 q~~T~gqdk~v~lW~--~-~k~~wt~~~~-d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d-~~~ls~v~  454 (626)
T KOG2106|consen  382 QLLTCGQDKHVRLWN--D-HKLEWTKIIE-DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTD-NEQLSVVR  454 (626)
T ss_pred             heeeccCcceEEEcc--C-CceeEEEEec-CceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEec-CCceEEEE
Confidence            899999999999999  2 3566666544 778899999999 99999999999999999855554 3333 77999999


Q ss_pred             ECCCCCEEEEeccCccC
Q 020454          309 RHPTLPIIASCGFLEAA  325 (326)
Q Consensus       309 ~~p~~~~l~s~s~D~~~  325 (326)
                      |+|+|.+||.||.|+.+
T Consensus       455 ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  455 YSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             EcCCCCEEEEecCCCeE
Confidence            99999999999999853

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.5e-18  Score=134.21  Aligned_cols=245  Identities=11%  Similarity=0.055  Sum_probs=159.3

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+...+..++|.  +++++|++++.|++|++|++..-+... .+.+...   .+-+..+.+.+.+ +      ....+++
T Consensus        84 gH~~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~e-Hr~~R~n---ve~dhpT~V~Fap-D------c~s~vv~  150 (420)
T KOG2096|consen   84 GHKKEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKE-HRCIRQN---VEYDHPTRVVFAP-D------CKSVVVS  150 (420)
T ss_pred             ccCCceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhh-hhHhhcc---ccCCCceEEEECC-C------cceEEEE
Confidence            455566666664  567799999999999999986422111 1110000   1112233344322 1      2345666


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEE-----ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      +....++++|.+.....  +....+..-|+     -.+.-.+..+-...++++|++++.|..|.+|+++ ++.+..+...
T Consensus       151 ~~~g~~l~vyk~~K~~d--G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn  227 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTD--GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN  227 (420)
T ss_pred             EccCCEEEEEEeeeccc--CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence            77778899998876543  22222222333     2233456667777778999999999999999998 7766654432


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-------CceeEEeecCCceEEEEecCCCCeEEEE
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~i~~v~~s~~~~~l~~g  276 (326)
                      ...         -+..+.+|  +|+++++++.--.|++|.+--++       ..+.++++|.+.|..++|+|+.+.+++.
T Consensus       228 q~~---------n~~aavSP--~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  228 QSS---------NYDAAVSP--DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             ccc---------ccceeeCC--CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence            211         23446777  78899999999999999964221       1356788999999999999999999999


Q ss_pred             cCCCcEEEEECCC-------CeEEEEEcc--e-ecceEEEEEECCCCCEEEEec
Q 020454          277 NGSGDLASVDIRT-------GKLLGCFIG--K-CSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       277 ~~dg~v~iwd~~~-------~~~~~~~~~--~-~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      +.||++++||..-       .+.++....  | -.+.-..|+++|.++.||...
T Consensus       297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~  350 (420)
T KOG2096|consen  297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF  350 (420)
T ss_pred             ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence            9999999999752       223333211  1 012233789999999887653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=3.2e-19  Score=145.39  Aligned_cols=262  Identities=9%  Similarity=0.068  Sum_probs=182.4

Q ss_pred             ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe--cCCcEEEEeccccceeeeecccCCC
Q 020454           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGDLRVAISNAGDS   97 (326)
Q Consensus        20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~~~~~~~~~~~~~~~   97 (326)
                      ++....+++||...- .+..    ++..+..+-.+..++|.....   |++++  .|..|++|.- .++ ..++......
T Consensus         8 aS~gd~~kl~D~s~~-~~~~----~~~~~t~~pg~~s~~w~~~n~---lvvas~~gdk~~~~~~K-~g~-~~~Vp~~~k~   77 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDL-ETKS----EYVHQTAEPGDFSFNWQRRNF---LVVASMAGDKVMRIKEK-DGK-TPEVPRVRKL   77 (673)
T ss_pred             eccCCceEEeecccc-cCcc----ccccCCCCCcceeeeccccce---EEEeecCCceeEEEecc-cCC-CCccceeecc
Confidence            333447999998866 2323    333334444456666654433   55554  4667888865 333 2233222111


Q ss_pred             CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE
Q 020454           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (326)
Q Consensus        98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  177 (326)
                         .++ .-.|+....        ..-++++++..+.|+|||+....         +..+-..+...|+++.++....||
T Consensus        78 ---~gd-~~~Cv~~~s--------~S~y~~sgG~~~~Vkiwdl~~kl---------~hr~lkdh~stvt~v~YN~~Deyi  136 (673)
T KOG4378|consen   78 ---TGD-NAFCVACAS--------QSLYEISGGQSGCVKIWDLRAKL---------IHRFLKDHQSTVTYVDYNNTDEYI  136 (673)
T ss_pred             ---ccc-hHHHHhhhh--------cceeeeccCcCceeeehhhHHHH---------HhhhccCCcceeEEEEecCCccee
Confidence               111 112222211        44689999999999999987432         222223456789999999999999


Q ss_pred             EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-ee
Q 020454          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DF  256 (326)
Q Consensus       178 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~  256 (326)
                      |+++..|.|.|..+.++.....+.....        ..|.-+.|+|... .+|.+++.+|.|.+||+... .|...+ +.
T Consensus       137 Asvs~gGdiiih~~~t~~~tt~f~~~sg--------qsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~-sp~~~~~~~  206 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTKQKTTTFTIDSG--------QSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGM-SPIFHASEA  206 (673)
T ss_pred             EEeccCCcEEEEecccCccccceecCCC--------CeEEEeecccccc-eeeEeeccCCeEEEEeccCC-Ccccchhhh
Confidence            9999999999999988776554433222        2366788998743 48889999999999999976 555544 46


Q ss_pred             cCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          257 RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       257 ~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      |..+...|+|+|.. ..|++-+.|..|.+||++..+....+..  ..+...++|.++|.+|+.|..-|.
T Consensus       207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             ccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCce
Confidence            88999999999975 5666889999999999998777766662  569999999999999999987764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=4.6e-19  Score=142.94  Aligned_cols=242  Identities=15%  Similarity=0.151  Sum_probs=170.4

Q ss_pred             ceEEEEEeeeCCCCCeEEEEecCCcEEEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ..+.++.|-+..+-+++++|...|.|-+||+. +++-...+..+     ..|.++|.++.+.+.       +...+++.+
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-----~~hs~~Vs~l~F~P~-------n~s~i~ssS  254 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-----TPHSGPVSGLKFSPA-------NTSQIYSSS  254 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-----ccCCccccceEecCC-------Chhheeeec
Confidence            34556667666666799999999999999994 22222222222     266689999987663       457899999


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLG  209 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~  209 (326)
                      .||+|++-|++.....      .+...+ .....+..+.++.+...++.+..=|...+||++++.. .+.+.-|.     
T Consensus       255 yDGtiR~~D~~~~i~e------~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-----  322 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISE------EVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-----  322 (498)
T ss_pred             cCceeeeeeecchhhH------HHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-----
Confidence            9999999998764321      110000 1123466788888887777887778999999997654 33333332     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--C-ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                          ..|++++++|- ...+|++++.|++++|||+|...  . |+.....|...|.+..|||.+-.|++.+.|..|+|||
T Consensus       323 ----kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  323 ----KKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             ----cccceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence                46889999997 45599999999999999998531  2 3445557889999999999987899999999999999


Q ss_pred             CC----CCeEEEEEcceec--c--eEEEEEECCCCCEEEEeccC
Q 020454          287 IR----TGKLLGCFIGKCS--G--SIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       287 ~~----~~~~~~~~~~~~~--~--~v~~l~~~p~~~~l~s~s~D  322 (326)
                      ..    ...++..+...+.  .  .....+|.|+..+|+.|-+-
T Consensus       398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~  441 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP  441 (498)
T ss_pred             cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC
Confidence            83    3344444431101  1  23355799999998887543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=4.8e-19  Score=148.34  Aligned_cols=249  Identities=14%  Similarity=0.175  Sum_probs=165.1

Q ss_pred             EEEeeeC-CCCCeEEEEecCCcEEEEecccccee-eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454           56 AASIDDS-QNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (326)
Q Consensus        56 ~~~~~~~-~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g  133 (326)
                      +..|... ....+|+++..||.|.++|...-.+. ++-+...   ...|.+.|..+.+.+        .+..|++++.|.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~---~~aH~nAifDl~wap--------ge~~lVsasGDs  122 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKK---PLAHKNAIFDLKWAP--------GESLLVSASGDS  122 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcc---cccccceeEeeccCC--------CceeEEEccCCc
Confidence            3444432 33457999999999999998654443 1111111   136778999999877        557899999999


Q ss_pred             cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCce---------eeeeecCC
Q 020454          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE---------KIWTAKPP  203 (326)
Q Consensus       134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~---------~~~~~~~~  203 (326)
                      ++++||++.....     + .+ ..+.|...+.+++|.|.. ..|++|+.||.|.|||++-..         .+....+.
T Consensus       123 T~r~Wdvk~s~l~-----G-~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~  195 (720)
T KOG0321|consen  123 TIRPWDVKTSRLV-----G-GR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT  195 (720)
T ss_pred             eeeeeeeccceee-----c-ce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence            9999998865431     1 11 345667889999999976 789999999999999997432         01100100


Q ss_pred             ---CCCCCC------cCC----CCceeeeEEeecCCCcEEEEEeC-CCeEEEEeCCCCCC-----ce--eEEeec---CC
Q 020454          204 ---PKNSLG------IFT----PTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRR-----PV--MSFDFR---ET  259 (326)
Q Consensus       204 ---~~~~~~------~~~----~~~v~~~~~~p~~~~~~l~~~~~-dg~v~iwd~~~~~~-----~~--~~~~~~---~~  259 (326)
                         +...+.      ...    ...|+.+.|-   |...||+++. |+.|++||+|....     +.  ..+..+   ..
T Consensus       196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk---De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~  272 (720)
T KOG0321|consen  196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFK---DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV  272 (720)
T ss_pred             CCCCCchhhccccccccccCceeeeeEEEEEe---ccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence               000000      001    1246666664   4458998887 99999999996522     22  222222   23


Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEECCCC--eEEEEEcceecceEE-EEEECCCCCEEEEeccCccC
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIR-SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~-~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .++++.....|.+|++.+.|+.|++||+.+.  .++..+.++....++ .-..+|++.+|++|+.|+.|
T Consensus       273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a  341 (720)
T KOG0321|consen  273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA  341 (720)
T ss_pred             eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcce
Confidence            5777788777999999999999999999864  345555554222222 12357999999999999876

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=5.5e-19  Score=134.75  Aligned_cols=231  Identities=16%  Similarity=0.129  Sum_probs=156.7

Q ss_pred             CCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-------CcEEEEEccccc
Q 020454           74 NGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-------GKASMRSIEVTK  144 (326)
Q Consensus        74 dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-------g~v~i~~~~~~~  144 (326)
                      |+.|.+.++..+.  +......       .+-+.|..++..+.       +...|.++..+       -.+.||.+....
T Consensus        39 dNqVhll~~d~e~s~l~skvf~-------h~agEvw~las~P~-------d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~  104 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFF-------HHAGEVWDLASSPF-------DQRILATVYNDTSDSGVLTGAAIWQIPEPL  104 (370)
T ss_pred             cceeEEEEecCccchhhhhhhh-------cCCcceehhhcCCC-------CCceEEEEEeccCCCcceeeEEEEeccccc
Confidence            4777777765433  2222221       33477877775441       23344555432       235788877543


Q ss_pred             ccc-ccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          145 VSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       145 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                      ..+ ......+...+...-+.|.|+.|.|++..+++- .|+.|.+|++..... +..+.....    .......++-+|+
T Consensus       105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s----~e~~~~ftsg~Ws  179 (370)
T KOG1007|consen  105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSES----AEMRHSFTSGAWS  179 (370)
T ss_pred             CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeeccccc----ccccceecccccC
Confidence            221 112234444444445689999999999888765 488999999987655 322222111    1122346677999


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCC-CeEEEEEccee
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRT-GKLLGCFIGKC  300 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~  300 (326)
                      |..+++.+++.+ |+++..||+|+..+....-..|...+..+.|+|+- .+|++++.||.|+|||.+. ..+++.+.+| 
T Consensus       180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-  257 (370)
T KOG1007|consen  180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-  257 (370)
T ss_pred             CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-
Confidence            977887766654 89999999998854333334688889999999985 4667999999999999985 4578889998 


Q ss_pred             cceEEEEEECC-CCCEEEEeccCccC
Q 020454          301 SGSIRSIARHP-TLPIIASCGFLEAA  325 (326)
Q Consensus       301 ~~~v~~l~~~p-~~~~l~s~s~D~~~  325 (326)
                      ...|+++.|+| ..++|.|+|.|-.+
T Consensus       258 sHWvW~VRfn~~hdqLiLs~~SDs~V  283 (370)
T KOG1007|consen  258 SHWVWAVRFNPEHDQLILSGGSDSAV  283 (370)
T ss_pred             ceEEEEEEecCccceEEEecCCCcee
Confidence            99999999998 56789999999754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=4.7e-18  Score=143.73  Aligned_cols=287  Identities=11%  Similarity=0.075  Sum_probs=187.3

Q ss_pred             CCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCC-CCCeEEEEecCCcEEEEeccccceee
Q 020454           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        11 ~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      .|.+..+++.+..-.|.+||..+.     .+....  +.+...+.+..+...+ ...++++|+.||.|.+|.++...+..
T Consensus        21 sw~~~~~vafGa~~~Iav~dp~k~-----~i~t~l--~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~   93 (764)
T KOG1063|consen   21 SWGPGGLVAFGAGPAIAVADPEKI-----LIVTTL--DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIK   93 (764)
T ss_pred             cccccceEEecCCceEEEeCcccc-----eeEEec--cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEE
Confidence            344566777888888999997754     232233  3444444455554322 23379999999999999998555544


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEcccccc-----------------------
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKV-----------------------  145 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~-----------------------  145 (326)
                      .+..      +.+...+.++.-           .....++ ..|+.+++|+.+..+.                       
T Consensus        94 i~~~------~g~~~~~~cv~a-----------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~  156 (764)
T KOG1063|consen   94 IYTI------QGHCKECVCVVA-----------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKN  156 (764)
T ss_pred             EEee------cCcceeEEEEEe-----------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhcc
Confidence            4443      234456665552           1233333 7899999999855441                       


Q ss_pred             ------ccccccceEEEEEcc------------CCCceEEEEEcCCC---CEEEEecCCCeEEEEECCCce---------
Q 020454          146 ------SAESSCSTVKSWNVC------------ASGTIAFSKVDISE---KFSLFGGKGVEVNVWDLDKCE---------  195 (326)
Q Consensus       146 ------~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~---~~l~sg~~d~~i~iwd~~~~~---------  195 (326)
                            +.+..+..+.++.-.            |..-|.+++|...+   -+||+++.|..||||.+.-..         
T Consensus       157 ~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~  236 (764)
T KOG1063|consen  157 NKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED  236 (764)
T ss_pred             CCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc
Confidence                  111222222222211            22336677776543   488999999999999986322         


Q ss_pred             --------eeeeecCC-----CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeE-----Eee
Q 020454          196 --------KIWTAKPP-----PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMS-----FDF  256 (326)
Q Consensus       196 --------~~~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~-----~~~  256 (326)
                              +++...++     ..+.+.+.|..||+++.|+|  .+..|++++.|.++.+|....... -+..     ..+
T Consensus       237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg  314 (764)
T KOG1063|consen  237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG  314 (764)
T ss_pred             ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence                    11111100     11223345789999999998  455899999999999999775411 1111     212


Q ss_pred             cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC---eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       257 ~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .........|+|+++.+++-+..|..++|.....   .+...+.|| .+.|++++|+|.|.+|.|.|.|-+
T Consensus       315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH-~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH-VDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc-cccceeeeecCCCCEEEEeccccc
Confidence            3345788899999999999999999999983332   233446688 999999999999999999999975

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.3e-18  Score=127.51  Aligned_cols=227  Identities=19%  Similarity=0.130  Sum_probs=160.6

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccceeee---ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVA---ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS  136 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~  136 (326)
                      ..++..++|++|..+|.|-++.+..-.....   -+.. .-+.+.|++++..+.+          .+..|++++. |.|+
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~-iv~eqahdgpiy~~~f----------~d~~Lls~gd-G~V~   84 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK-IVPEQAHDGPIYYLAF----------HDDFLLSGGD-GLVY   84 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcc-eeeccccCCCeeeeee----------ehhheeeccC-ceEE
Confidence            3456667899999999999998852111000   0000 0001578899999987          4456776665 9999


Q ss_pred             EEEccccccccccccceEEEEEccCC--------CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          137 MRSIEVTKVSAESSCSTVKSWNVCAS--------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       137 i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      -|..+.....    .++-++|+...+        ..|+.|...|+.+-++.++.|+.++.||+++++....+++|.    
T Consensus        85 gw~W~E~~es----~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt----  156 (325)
T KOG0649|consen   85 GWEWNEEEES----LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT----  156 (325)
T ss_pred             Eeeehhhhhh----ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc----
Confidence            9988764421    334455654332        358999999998888888899999999999999999999987    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec----------CCceEEEEecCCCCeEEEEcC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----------ETPIKAVAEEPDSFNIYIGNG  278 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------~~~i~~v~~s~~~~~l~~g~~  278 (326)
                           .+|.++.--.. ++ .+++|+.||++|+||++++ +.+..+...          ...|-+++-  +...+++|+.
T Consensus       157 -----DYvH~vv~R~~-~~-qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG  226 (325)
T KOG0649|consen  157 -----DYVHSVVGRNA-NG-QILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG  226 (325)
T ss_pred             -----ceeeeeeeccc-Cc-ceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC
Confidence                 56777765322 33 7999999999999999987 556655421          224555554  5667887654


Q ss_pred             CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                       ..+.+|+++..++...|+  ...+|..+.|..+  .++++|.
T Consensus       227 -p~lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~  264 (325)
T KOG0649|consen  227 -PKLSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGE  264 (325)
T ss_pred             -CceeEEeccCCCceEEEe--cccceeEeeeecc--eEEEecc
Confidence             479999999999988887  3678888999544  4555553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=6e-19  Score=132.86  Aligned_cols=292  Identities=14%  Similarity=0.107  Sum_probs=181.2

Q ss_pred             CcccccCCCCCCC-eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454            2 PRTTTLECPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL   80 (326)
Q Consensus         2 ~~~~~~~~~~~~~-~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~   80 (326)
                      |....+.|.+-.. -||.+|++.|.|++|.+.+.     +-...|.. .....+..+-   ...+..|.+-..|+.+.+|
T Consensus        12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~-----r~~~~~r~-~g~~~it~lq---~~p~d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE-----RDLPLIRL-FGRLFITNLQ---SIPNDSLDTQGRDPLLILW   82 (323)
T ss_pred             cccchheehhhccchhhhcccccceEEEEEeecC-----ccchhhhh-hccceeecee---ecCCcchhhcCCCceEEEE
Confidence            3444555555444 67999999999999999976     22222221 1222333222   2222458889999999999


Q ss_pred             eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC-cEEEEEcccccc---ccccccceEEE
Q 020454           81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASMRSIEVTKV---SAESSCSTVKS  156 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-~v~i~~~~~~~~---~~~~~~~~~~~  156 (326)
                      ++..+.++..-..           .+.++.+.+          ..++..+... ....+.-+....   ..+.....+++
T Consensus        83 ~ia~s~~i~i~Si-----------~~nslgFCr----------fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i  141 (323)
T KOG0322|consen   83 TIAYSAFISIHSI-----------VVNSLGFCR----------FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQI  141 (323)
T ss_pred             EccCcceEEEeee-----------ecccccccc----------ceeccCCCcchhheecCCcccchhhhhccCccceeEc
Confidence            9976665433221           222233211          0111111111 111111000000   00111112222


Q ss_pred             EEc---cCCCceEEEEEcC-CC--CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc-CCCCceeeeEEeecCCCcE
Q 020454          157 WNV---CASGTIAFSKVDI-SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       157 ~~~---~~~~~v~~~~~~~-~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~  229 (326)
                      -+.   ...+.+.|.++.. .+  -+++.|-++|.+.+||+.++..+..++...+..... .+...|.++.|.+..+  .
T Consensus       142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--r  219 (323)
T KOG0322|consen  142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--R  219 (323)
T ss_pred             cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--C
Confidence            221   1124566776433 23  356778889999999999986665555443333222 2456788999986433  3


Q ss_pred             EEEEeCCCeEEEEeCCCC--CCce-eEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEE
Q 020454          230 FVAGTNDHQVRLYDTSAQ--RRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (326)
Q Consensus       230 l~~~~~dg~v~iwd~~~~--~~~~-~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  306 (326)
                      =++|+.+..+..|.+...  .-++ .+.....-.+..+.+-||++.+|+++.|+.|+||+.++..++..++-| .+.|++
T Consensus       220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~  298 (323)
T KOG0322|consen  220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNA  298 (323)
T ss_pred             CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeE
Confidence            477888888999987632  1112 233445567888999999999999999999999999999999999998 999999


Q ss_pred             EEECCCCCEEEEeccCccCC
Q 020454          307 IARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       307 l~~~p~~~~l~s~s~D~~~~  326 (326)
                      ++|+|+.+++|++|.|+.+|
T Consensus       299 vAfspd~~lmAaaskD~rIS  318 (323)
T KOG0322|consen  299 VAFSPDCELMAAASKDARIS  318 (323)
T ss_pred             EEeCCCCchhhhccCCceEE
Confidence            99999999999999998764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=8.4e-20  Score=148.99  Aligned_cols=183  Identities=17%  Similarity=0.164  Sum_probs=142.5

Q ss_pred             eEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      .-+-.+..|.|+|||+......     ..+.-.+. ....-|+++...|+++.|++|++-.++.|||+....+..+..-.
T Consensus       432 rhVyTgGkgcVKVWdis~pg~k-----~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt  506 (705)
T KOG0639|consen  432 RHVYTGGKGCVKVWDISQPGNK-----SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT  506 (705)
T ss_pred             ceeEecCCCeEEEeeccCCCCC-----CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC
Confidence            3444445677899998754311     12222221 13456999999999999999999999999999876553332221


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~  283 (326)
                      ..       ....++++.+|  |.++.+++..||.|.|||+++. ..+..|++|...+.||.++++|..|.+|+-|++|+
T Consensus       507 ss-------apaCyALa~sp--DakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvR  576 (705)
T KOG0639|consen  507 SS-------APACYALAISP--DAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR  576 (705)
T ss_pred             Cc-------chhhhhhhcCC--ccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence            11       02345667787  5668999999999999999977 67899999999999999999999999999999999


Q ss_pred             EEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .||+++++.+.+..  ....|.+|..+|++.+|+.|-..+.
T Consensus       577 cWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~  615 (705)
T KOG0639|consen  577 CWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSN  615 (705)
T ss_pred             ehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCc
Confidence            99999999887766  3788999999999999999876654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4.2e-18  Score=131.52  Aligned_cols=261  Identities=14%  Similarity=0.126  Sum_probs=185.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..|+.|-.+|.|-+||..+.     .+...++.+-++..  ++  +|+..+..|++++.|..|.+||+..|..+..+...
T Consensus        36 ~~lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~--sl--~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~  106 (405)
T KOG1273|consen   36 DYLAVGCANGRVVIYDFDTF-----RIARMLSAHVRPIT--SL--CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD  106 (405)
T ss_pred             ceeeeeccCCcEEEEEcccc-----chhhhhhcccccee--EE--EecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence            44888999999999999987     34334444444433  33  45667779999999999999999999988777652


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCC----ceEEEEE
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG----TIAFSKV  170 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~  170 (326)
                               .+|.+..+.+.       ..++.+++-.+..-.+.++....+         ++......+    .-.+..|
T Consensus       107 ---------spv~~~q~hp~-------k~n~~va~~~~~sp~vi~~s~~~h---------~~Lp~d~d~dln~sas~~~f  161 (405)
T KOG1273|consen  107 ---------SPVWGAQWHPR-------KRNKCVATIMEESPVVIDFSDPKH---------SVLPKDDDGDLNSSASHGVF  161 (405)
T ss_pred             ---------Cccceeeeccc-------cCCeEEEEEecCCcEEEEecCCce---------eeccCCCccccccccccccc
Confidence                     67887776553       346666666666566666543221         111111111    1223358


Q ss_pred             cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--
Q 020454          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--  248 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--  248 (326)
                      ++.|+++++|...|.+.++|..+.+++..++-..        ...|..+.++.  .++.|+.-+.|..||.|+++.-.  
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits--------~~~IK~I~~s~--~g~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS--------VQAIKQIIVSR--KGRFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeech--------heeeeEEEEec--cCcEEEEecCCceEEEEehhhhccc
Confidence            8899999999999999999999988776655432        12366777775  56689999999999999977211  


Q ss_pred             ----C--ceeEEe--ecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          249 ----R--PVMSFD--FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       249 ----~--~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                          .  +.++++  ...-+-.+++|+.+|.|+++|+. ...++||.-..|.+++.+.|........+.|+|-.++|++-
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence                1  112221  12335567899999999997775 45799999999999999998722567889999999988887

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=2.3e-17  Score=142.36  Aligned_cols=255  Identities=14%  Similarity=0.093  Sum_probs=173.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..++.|..+|.|-+||+..+ ...+....+.....+.+.++++.|.......-+++++.||.|..|+++.-.........
T Consensus       256 ~ll~gG~y~GqV~lWD~~~~-~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~  334 (555)
T KOG1587|consen  256 NLLAGGCYNGQVVLWDLRKG-SDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL  334 (555)
T ss_pred             ceEEeeccCceEEEEEccCC-CCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence            77999999999999999977 33222333445567788888888876655556999999999999987532221111110


Q ss_pred             CCCC----CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454           95 GDSG----AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (326)
Q Consensus        95 ~~~~----~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  170 (326)
                      ....    .......+..+.+..       .+...+++|++.|.|+.-.-........ ..-....--..+.++|..+.+
T Consensus       335 ~~~~~~~~~~~~~~~~t~~~F~~-------~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~v~~v~~  406 (555)
T KOG1587|consen  335 ESKKHKGQQSSKAVGATSLKFEP-------TDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFITHIGPVYAVSR  406 (555)
T ss_pred             ccccccccccccccceeeEeecc-------CCCceEEEEcCCcEEEEEeccCCccccc-ccccccccccccCcceEeeec
Confidence            0000    001223455566433       2456899999999987633222111000 000111111235678999999


Q ss_pred             cCCC-CEEEEecCCCeEEEEECC-CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC-C
Q 020454          171 DISE-KFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-Q  247 (326)
Q Consensus       171 ~~~~-~~l~sg~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~-~  247 (326)
                      +|=. +++++++ |.+++||... ...+++.....         +..|++++|+|.. ...|+++..||.+.+||+.. .
T Consensus       407 nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~---------~~~v~~vaWSptr-pavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  407 NPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS---------PDYVTDVAWSPTR-PAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             CCCccceeeeec-cceeEeccccCCCCcchhhhhc---------cceeeeeEEcCcC-ceEEEEEcCCCceehhhhhccc
Confidence            9976 5556665 9999999987 55666654442         3569999999974 45899999999999999773 3


Q ss_pred             CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       248 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      ..|+.+........+.+.|++.|+.|++|+..|.+++|++..
T Consensus       476 ~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  476 EEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            457777777777888889999999999999999999999963

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=1.6e-16  Score=125.28  Aligned_cols=223  Identities=20%  Similarity=0.229  Sum_probs=153.9

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC--cEEEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRS  139 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g--~v~i~~  139 (326)
                      .++...|.+|+.|| -++|+.+.-..  .+..      ..+.-.|.-+-+          ....++..+.+.  .+++++
T Consensus        14 Nqd~~~lsvGs~~G-yk~~~~~~~~k--~~~~------~~~~~~IvEmLF----------SSSLvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen   14 NQDSTLLSVGSKDG-YKIFSCSPFEK--CFSK------DTEGVSIVEMLF----------SSSLVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             ccceeEEEccCCCc-eeEEecCchHH--hhcc------cCCCeEEEEeec----------ccceeEEEecCCCceEEEEE
Confidence            44445688899988 47887653221  1111      122234444443          234555544433  366666


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      +....        .+.....  ..+|.++.++.  +.|++.=.+ .|.|||+++.+.+.++...+.+.      ..  -+
T Consensus        75 ~Kk~~--------~ICe~~f--pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~------~g--l~  133 (391)
T KOG2110|consen   75 FKKKT--------TICEIFF--PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP------KG--LC  133 (391)
T ss_pred             cccCc--------eEEEEec--CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCc------cc--eE
Confidence            54432        3333332  56888888864  444444444 59999999999988876653332      22  33


Q ss_pred             EEeecCCCcEEEEE--eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc-EEEEECCCCeEEEEE
Q 020454          220 AFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCF  296 (326)
Q Consensus       220 ~~~p~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~-v~iwd~~~~~~~~~~  296 (326)
                      +++|+.++.+++--  ...|.|.+||..+. +++..+..|++.+-+++|+++|.+||++++.|+ ||||.+.+|+.+++|
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence            55665566677753  34789999999987 789999999999999999999999999999998 899999999999999


Q ss_pred             cce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454          297 IGK-CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       297 ~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +-. ....|.+|+|+|++++|++.|.-+++
T Consensus       213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             eCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            732 23468899999999999998876653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=1.4e-17  Score=127.34  Aligned_cols=280  Identities=14%  Similarity=0.094  Sum_probs=183.4

Q ss_pred             eeeeeec----CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC--CCeEEEEecCCcEEEEecccccee
Q 020454           15 LRALTFD----SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGDLR   88 (326)
Q Consensus        15 ~~l~~~~----~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~i~~~~~~~~~   88 (326)
                      .||+.|+    ....|.+..+... .+.......|..+   --...+.|.+++.  .+-|+ ++.+..+|+|.+...+..
T Consensus        60 ~rla~gS~~Ee~~Nkvqiv~ld~~-s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~pdlL-ATs~D~LRlWri~~ee~~  134 (364)
T KOG0290|consen   60 FRLAVGSFIEEYNNKVQIVQLDED-SGELVEDANFDHP---YPVTKLMWIPDSKGVYPDLL-ATSSDFLRLWRIGDEESR  134 (364)
T ss_pred             eeEEEeeeccccCCeeEEEEEccC-CCceeccCCCCCC---CCccceEecCCccccCcchh-hcccCeEEEEeccCcCCc
Confidence            6666665    3456666665533 2222221122221   1222344444432  12122 344568999998633221


Q ss_pred             eeec-ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454           89 VAIS-NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (326)
Q Consensus        89 ~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  167 (326)
                      ...+ .+..........+++++.+..-       +.+++.+.+-|-+..|||++..      ..++++.--+.|..+|..
T Consensus       135 ~~~~~~L~~~kns~~~aPlTSFDWne~-------dp~~igtSSiDTTCTiWdie~~------~~~~vkTQLIAHDKEV~D  201 (364)
T KOG0290|consen  135 VELQSVLNNNKNSEFCAPLTSFDWNEV-------DPNLIGTSSIDTTCTIWDIETG------VSGTVKTQLIAHDKEVYD  201 (364)
T ss_pred             eehhhhhccCcccccCCcccccccccC-------CcceeEeecccCeEEEEEEeec------cccceeeEEEecCcceeE
Confidence            1111 1111111234467777765431       4578999999999999998764      245677777788999999


Q ss_pred             EEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-CeEEEEeCC
Q 020454          168 SKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTS  245 (326)
Q Consensus       168 ~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-g~v~iwd~~  245 (326)
                      ++|...+ +.||+.|.||.+|+||++..+-...+...+..      ......++|++. +.+++|+-..| ..|.|.|+|
T Consensus       202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~------~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP------STPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC------CCcceeeccCcC-CchHHhhhhcCCceEEEEEec
Confidence            9999865 89999999999999999975533322222111      123456788775 55688876554 589999999


Q ss_pred             CCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCC------eEEEEEcceecceEEEEEECC-CCCEEE
Q 020454          246 AQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSGSIRSIARHP-TLPIIA  317 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~------~~~~~~~~~~~~~v~~l~~~p-~~~~l~  317 (326)
                      ....++..++.|.+.|+.++|.|. ...|++++.|..+-+||+.+.      .++..+. . .+.|+.|.|+| ....|+
T Consensus       275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a-~~EVNqi~Ws~~~~Dwia  352 (364)
T KOG0290|consen  275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-A-GGEVNQIQWSSSQPDWIA  352 (364)
T ss_pred             CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-c-cceeeeeeecccCCCEEE
Confidence            887899999999999999999997 578889999999999999863      2333444 2 67999999996 556777


Q ss_pred             Eecc
Q 020454          318 SCGF  321 (326)
Q Consensus       318 s~s~  321 (326)
                      .|..
T Consensus       353 i~~~  356 (364)
T KOG0290|consen  353 ICFG  356 (364)
T ss_pred             EEec
Confidence            7653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=3.6e-18  Score=141.31  Aligned_cols=213  Identities=20%  Similarity=0.299  Sum_probs=153.4

Q ss_pred             CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec
Q 020454          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (326)
Q Consensus       102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~  181 (326)
                      +...|+.+.+-+        ....++++++||.+.+|.+............++..|+ .+.++|.|+.+.+++..+++|+
T Consensus       293 ~~d~ir~l~~~~--------sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  293 HDDCIRALAFHP--------SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             chhhhhhhhcCC--------CCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeec
Confidence            344555555433        5678999999999999999442222233445666676 3678999999999999999999


Q ss_pred             CCCeEEEEECCCceeeeeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----------
Q 020454          182 KGVEVNVWDLDKCEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------  249 (326)
Q Consensus       182 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-----------  249 (326)
                      .||+|+.|++....--+... .......-..+...|..+++++..+  .|++++.||++++|+......           
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~  441 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGY  441 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCCccccCC
Confidence            99999999876322111100 0000000112335566888887544  799999999999999754311           


Q ss_pred             c--------------------------------eeEEee-------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          250 P--------------------------------VMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       250 ~--------------------------------~~~~~~-------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      |                                +..+..       ....+..+.++|.+.+.+++..|+.|+++|..++
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence            0                                000000       0125677888899999999999999999999999


Q ss_pred             eEEEEEcceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       291 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      ++++....| ...++++++.|++.+|++++.|+.++
T Consensus       522 ~~l~s~~a~-~~svtslai~~ng~~l~s~s~d~sv~  556 (577)
T KOG0642|consen  522 KILHSMVAH-KDSVTSLAIDPNGPYLMSGSHDGSVR  556 (577)
T ss_pred             ccchheeec-cceecceeecCCCceEEeecCCceee
Confidence            999999998 99999999999999999999999764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=3.1e-18  Score=132.50  Aligned_cols=203  Identities=13%  Similarity=0.152  Sum_probs=152.4

Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  180 (326)
                      +|.+.|..++...        ....+-+++.|.+.++|.++...        .+..|. .+.+.|++++||+++.+++++
T Consensus       146 GHkDGiW~Vaa~~--------tqpi~gtASADhTA~iWs~Esg~--------CL~~Y~-GH~GSVNsikfh~s~~L~lTa  208 (481)
T KOG0300|consen  146 GHKDGIWHVAADS--------TQPICGTASADHTARIWSLESGA--------CLATYT-GHTGSVNSIKFHNSGLLLLTA  208 (481)
T ss_pred             ccccceeeehhhc--------CCcceeecccccceeEEeecccc--------ceeeec-ccccceeeEEeccccceEEEc
Confidence            5566777776544        33477888999999999987644        333333 457889999999999999999


Q ss_pred             cCCCeEEEEECC------Cce---------eeeeecCC--------CCCCCCc--------CCCCceeeeEEeecCCCcE
Q 020454          181 GKGVEVNVWDLD------KCE---------KIWTAKPP--------PKNSLGI--------FTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       181 ~~d~~i~iwd~~------~~~---------~~~~~~~~--------~~~~~~~--------~~~~~v~~~~~~p~~~~~~  229 (326)
                      +.|++.+||...      ...         .......+        ..+...+        .|...|.+..|..  .++.
T Consensus       209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q  286 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQ  286 (481)
T ss_pred             cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccce
Confidence            999999999832      110         00000000        0000001        1233455666665  5678


Q ss_pred             EEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEE
Q 020454          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIA  308 (326)
Q Consensus       230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~  308 (326)
                      +++++.|.+..+||+.++ .++..+.+|+...+.++-+|..+++++.+.|-+.++||++.. ..+..|+|| ...|++..
T Consensus       287 ~vTaSWDRTAnlwDVEtg-e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH-tdtVTS~v  364 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETG-EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH-TDTVTSVV  364 (481)
T ss_pred             eeeeeccccceeeeeccC-ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc-ccceeEEE
Confidence            999999999999999998 789999999999999999999999999999999999999843 346779998 99999999


Q ss_pred             ECCCCCEEEEeccCccC
Q 020454          309 RHPTLPIIASCGFLEAA  325 (326)
Q Consensus       309 ~~p~~~~l~s~s~D~~~  325 (326)
                      |.-+. .+++||.|+++
T Consensus       365 F~~dd-~vVSgSDDrTv  380 (481)
T KOG0300|consen  365 FNTDD-RVVSGSDDRTV  380 (481)
T ss_pred             EecCC-ceeecCCCceE
Confidence            98765 58899999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.4e-18  Score=154.57  Aligned_cols=242  Identities=12%  Similarity=0.076  Sum_probs=170.7

Q ss_pred             eeeeecCcccEEEEEecCC-cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           16 RALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -|+.|.+||.|-+|+.... ..+...++.+...+  ...+.++.|.. ..+++||+|..||.|.|||+.+-+.-....  
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h--~G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~--  156 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKH--TGPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG--  156 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhccc--CCceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC--
Confidence            3777889999999998762 12222333344433  33444544432 234489999999999999997533222221  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                          .+.-...|.++.|-. +      ....|++++.+|...|||++.+...       +++-+......+..++|||+.
T Consensus       157 ----~~~~~~eI~~lsWNr-k------vqhILAS~s~sg~~~iWDlr~~~pi-------i~ls~~~~~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  157 ----SQAPPSEIKCLSWNR-K------VSHILASGSPSGRAVIWDLRKKKPI-------IKLSDTPGRMHCSVLAWHPDH  218 (1049)
T ss_pred             ----CCCCcccceEeccch-h------hhHHhhccCCCCCceeccccCCCcc-------cccccCCCccceeeeeeCCCC
Confidence                122346788888643 2      3456888999999999999876532       222222222458899999987


Q ss_pred             -CEEEEecCCCe---EEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          175 -KFSLFGGKGVE---VNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       175 -~~l~sg~~d~~---i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                       ..|++++.|..   |.+||+|.. .++..+..|.         ..|.++.|.+. |..++++++.|++|.+|+..++ +
T Consensus       219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~---------~GilslsWc~~-D~~lllSsgkD~~ii~wN~~tg-E  287 (1049)
T KOG0307|consen  219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ---------RGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNTG-E  287 (1049)
T ss_pred             ceeeeeecCCCCCceeEeecccccCCchhhhcccc---------cceeeeccCCC-CchhhhcccCCCCeeEecCCCc-e
Confidence             56666666543   999999864 3455555655         45778899986 4559999999999999999998 5


Q ss_pred             ceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCCe
Q 020454          250 PVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~~  291 (326)
                      .+.++.....++..+.|+|... .+++++-||.|.||.+....
T Consensus       288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            6888888889999999999765 78899999999999998643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.3e-17  Score=130.01  Aligned_cols=237  Identities=12%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+++++=.+|.||++|..++     .+...+..+......+.+.-.+  ....+.+++.||+|++||++.......+...
T Consensus        41 ~~vav~lSngsv~lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG-----QLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccch-----hhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            56889999999999999886     4554555444444433343333  4446999999999999999866655554432


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe----cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~----~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  170 (326)
                      .     ....+..++..-.        ..+.+.+++    .+-.+.+||++....       .++.|.-.|...|+++.|
T Consensus       114 ~-----~~~~~f~~ld~nc--------k~~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrF  173 (376)
T KOG1188|consen  114 Q-----QSGTPFICLDLNC--------KKNIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRF  173 (376)
T ss_pred             C-----CCCCcceEeeccC--------cCCeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEe
Confidence            1     1124566565421        223344443    456789999887652       477888888999999999


Q ss_pred             cCCC-CEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          171 DISE-KFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       171 ~~~~-~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      ||+. ++|++|+.||-|.+||+.....   +...-+         +...|..+.|+...- +.+.+-+...+..+|++..
T Consensus       174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---------~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---------HGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELED  243 (376)
T ss_pred             cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc---------ccceeeeeeeecCCc-ceEEEEEccCceeEEEccC
Confidence            9976 8999999999999999975421   111111         113355555554211 1355555555566665543


Q ss_pred             CC------------------------------------------------------------CceeEEee-cCCceEEEE
Q 020454          247 QR------------------------------------------------------------RPVMSFDF-RETPIKAVA  265 (326)
Q Consensus       247 ~~------------------------------------------------------------~~~~~~~~-~~~~i~~v~  265 (326)
                      +.                                                            .++..+.+ |..-|+++.
T Consensus       244 ~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~  323 (376)
T KOG1188|consen  244 GSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL  323 (376)
T ss_pred             CChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh
Confidence            21                                                            11222222 444567777


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECC
Q 020454          266 EEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       266 ~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      |...+..+++|++||.+.+|...
T Consensus       324 ~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  324 FDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             hhcccceeeccCCCceEEEEecC
Confidence            87778899999999999999853

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.3e-17  Score=125.11  Aligned_cols=232  Identities=14%  Similarity=0.064  Sum_probs=158.4

Q ss_pred             EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454           56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (326)
Q Consensus        56 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v  135 (326)
                      +.|...+.-+.+||+|+.||.|.|||+.+...-..+.        .|..+|.+++|.+        ++.+|++++.|..+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls--------aH~~pi~sl~WS~--------dgr~LltsS~D~si   89 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS--------AHVRPITSLCWSR--------DGRKLLTSSRDWSI   89 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh--------ccccceeEEEecC--------CCCEeeeecCCcee
Confidence            4444455667799999999999999998776543333        6668999999877        77899999999999


Q ss_pred             EEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCC
Q 020454          136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT  214 (326)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  214 (326)
                      .+||+....        .++..+  -..+|....|||.. +.+++.-.+..-.+-++..++...-......+. .    .
T Consensus        90 ~lwDl~~gs--------~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl-n----~  154 (405)
T KOG1273|consen   90 KLWDLLKGS--------PLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL-N----S  154 (405)
T ss_pred             EEEeccCCC--------ceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc-c----c
Confidence            999986533        233333  36799999999965 333333333334444544322111111111110 0    0


Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC-CceEEEEecCCCCeEEEEcCCCcEEEEECCC----
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----  289 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----  289 (326)
                      .-.+..|.+  .|+++++|+..|.+.+||..+. +++..++... ..|..+.++..|++|+.-+.|+.|+.|+++.    
T Consensus       155 sas~~~fdr--~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  155 SASHGVFDR--RGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             ccccccccC--CCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence            111224554  6779999999999999999987 6788887665 7899999999999999999999999999873    


Q ss_pred             ---CeE--EEEEcce-ecceEEEEEECCCCCEEEEecc
Q 020454          290 ---GKL--LGCFIGK-CSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       290 ---~~~--~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                         +++  .++++.- ....=.++.|+.+|.|++.++.
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~  269 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA  269 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence               111  1222210 0223457788999999988873

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=1.4e-16  Score=137.61  Aligned_cols=277  Identities=14%  Similarity=0.106  Sum_probs=180.3

Q ss_pred             ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--eeecccCCCCCCC
Q 020454           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQP  101 (326)
Q Consensus        24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--~~~~~~~~~~~~~  101 (326)
                      +.+.||++... .. +.+...     ....+.++.+... ...+++.|+.+|.|.+||+..+...  ..+...    ...
T Consensus       222 ~~~~vW~~~~p-~~-Pe~~~~-----~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~----~~s  289 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NT-PELVLE-----SPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL----EVS  289 (555)
T ss_pred             ceEEEEecCCC-CC-ceEEEe-----cCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccc----ccc
Confidence            47889998865 22 223221     2222333444322 2336899999999999999866652  222211    125


Q ss_pred             CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEE---EEccCCCceEEEEEcCCC-CEE
Q 020454          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDISE-KFS  177 (326)
Q Consensus       102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l  177 (326)
                      |..++..+.+....      .+..+++++.||.|..|+++.........-.....   -+......+++++|.+.. +.+
T Consensus       290 h~~~v~~vvW~~~~------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F  363 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNE------HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF  363 (555)
T ss_pred             CCcCeEEEEEeccC------CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence            66788877766532      23569999999999999887644321111111111   011123468899999865 778


Q ss_pred             EEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          178 LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       178 ~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                      ++|+.+|.|.-=+-...+.-  ...+.+.   ....+...|+++.++|-. .+.|++++ |-+|+||.......|+..+.
T Consensus       364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~~---~~~~h~g~v~~v~~nPF~-~k~fls~g-DW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  364 IVGTEEGKVYKGCRKGYTPAPEVSYKGHS---TFITHIGPVYAVSRNPFY-PKNFLSVG-DWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             EEEcCCcEEEEEeccCCcccccccccccc---cccccCcceEeeecCCCc-cceeeeec-cceeEeccccCCCCcchhhh
Confidence            89999999876332222111  1112221   112355789999999853 33555655 99999999884457888888


Q ss_pred             ecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCC--eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          256 FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       256 ~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .+...+++++|||.- ..++++..||.+.+||+...  +++.+.+-+ ....+.+.|++.+++|+.|..-|.
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~  509 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGT  509 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCc
Confidence            888889999999974 56779999999999999753  445555544 567778889999999999988875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=2.6e-16  Score=125.49  Aligned_cols=291  Identities=13%  Similarity=0.084  Sum_probs=189.3

Q ss_pred             cccCCCCCCCeeeeeecCcccEEEEEecCCcCCC--cce--eeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454            5 TTLECPGCPPLRALTFDSLGLIKVIEARGEHGGV--PKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL   80 (326)
Q Consensus         5 ~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~   80 (326)
                      +++++..-...+++||+.|..||+|.++....+.  .++  ....+.+..  .+..+.|  ++.+.+|++|+.+|.|.+|
T Consensus        17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~--aVN~vRf--~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR--AVNVVRF--SPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             EEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcc--eeEEEEE--cCCcCeeeecCCCceEEEE
Confidence            4455555555699999999999999987763222  223  222333333  3334444  3456689999999999999


Q ss_pred             eccccc--------------eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           81 NPLNGD--------------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        81 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      ....-.              .+....      ...|...+..++|.+        ++..+++++.|+.+++||+..... 
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~------lr~h~~diydL~Ws~--------d~~~l~s~s~dns~~l~Dv~~G~l-  157 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKV------LRGHRDDIYDLAWSP--------DSNFLVSGSVDNSVRLWDVHAGQL-  157 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEE------ecccccchhhhhccC--------CCceeeeeeccceEEEEEecccee-
Confidence            765100              000000      014556777788877        677999999999999999876542 


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec---------CCC-CCCCCcCC----
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK---------PPP-KNSLGIFT----  212 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~---------~~~-~~~~~~~~----  212 (326)
                             +...+ .+...+..++|.|-++++++-+.|...+.+.+...+.+....         ++. .....+.+    
T Consensus       158 -------~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl  229 (434)
T KOG1009|consen  158 -------LAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL  229 (434)
T ss_pred             -------Eeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch
Confidence                   22222 345678899999999999999999888888776544333221         100 00111111    


Q ss_pred             CCceeeeEEeecCCCcEEEEEeC----C-----CeEEEEeCCCCCCceeEEeecCCceEEEEecC---------------
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTN----D-----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP---------------  268 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~----d-----g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~---------------  268 (326)
                      +.....++|.|  +|.++++...    .     +..++|+-...++|+..+.....+...+.|+|               
T Consensus       230 ksFFrRlsfTP--dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~  307 (434)
T KOG1009|consen  230 KSFFRRLSFTP--DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLF  307 (434)
T ss_pred             hhhhhhcccCC--CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccc
Confidence            12445667887  5667766532    2     23456665544566666665555555555553               


Q ss_pred             ---CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          269 ---DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       269 ---~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                         -+..++.++.+ .|++||.++.+++....+-|-..|+.++|+++|.+|+..|.||.-
T Consensus       308 ~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC  366 (434)
T KOG1009|consen  308 VLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC  366 (434)
T ss_pred             ccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence               22344555554 899999999988887765448899999999999999999999974

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=2.5e-16  Score=133.50  Aligned_cols=281  Identities=11%  Similarity=0.078  Sum_probs=199.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCC-ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      ..|++++.|..+.+|..... +|......+.++-... ....+.  .+.++++.+++-+..|-.++|...+...-.....
T Consensus       280 ~~LLSASaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g~--lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~  356 (764)
T KOG1063|consen  280 LDLLSASADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWGG--LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV  356 (764)
T ss_pred             hhheecccCcceEEEecCCc-cceEEEEEEeecccccccceeeE--EEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence            68999999999999998876 7777676677764422 223333  3455556788888899999998433222111111


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-----cCCCceEEE
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFS  168 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~  168 (326)
                      +     .+|.+.|.++.+.+        .+.++++.+.|-+-+++.-...+      .    .|..     .|+-.+.|+
T Consensus       357 i-----SGH~~~V~dv~W~p--------sGeflLsvs~DQTTRlFa~wg~q------~----~wHEiaRPQiHGyDl~c~  413 (764)
T KOG1063|consen  357 I-----SGHVDGVKDVDWDP--------SGEFLLSVSLDQTTRLFARWGRQ------Q----EWHEIARPQIHGYDLTCL  413 (764)
T ss_pred             c-----ccccccceeeeecC--------CCCEEEEeccccceeeecccccc------c----ceeeecccccccccceee
Confidence            1     26778999999866        67899999999998888643111      1    1321     134468899


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCc--------------------------------eeeee-ecC---C---------
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKC--------------------------------EKIWT-AKP---P---------  203 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~--------------------------------~~~~~-~~~---~---------  203 (326)
                      ++-+....+++|..+..+|+|+....                                +..+. ..+   +         
T Consensus       414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~  493 (764)
T KOG1063|consen  414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL  493 (764)
T ss_pred             ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence            99887778889999999999997632                                01110 000   0         


Q ss_pred             CCCC---------------------CC-cCCCCceeeeEEeecCCCcEEEEEeCCC-----eEEEEeCCCCCCceeEEee
Q 020454          204 PKNS---------------------LG-IFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFDF  256 (326)
Q Consensus       204 ~~~~---------------------~~-~~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~  256 (326)
                      ....                     .. +.|.-.|++++.+|  +++++|+++...     .|++|+..+. ..++.+.+
T Consensus       494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~--~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~  570 (764)
T KOG1063|consen  494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP--TGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG  570 (764)
T ss_pred             ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC--CCCEEeehhhhCCccceEEEEEeccch-hhhheecc
Confidence            0000                     00 11333588888887  566999987543     6999999987 44678999


Q ss_pred             cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE----EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       257 ~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |.-.|+.++|||||++|++.+.|+++.+|.......    ....+.| ..-|++..|+|++.++||+|.|+.+
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~V  642 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKV  642 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceE
Confidence            999999999999999999999999999999865422    2235677 8899999999999999999999875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=1e-16  Score=124.40  Aligned_cols=253  Identities=12%  Similarity=0.104  Sum_probs=167.9

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccceeee-----ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCc
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVA-----ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~  134 (326)
                      .|++++.-|++-+.|..+++|++...-.-..     .......-.-.....|....+++.-. ...+..+++++.+.+.-
T Consensus        56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~-s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMK-SDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccc-cCCCccceeeeccccCc
Confidence            3567777899999999999999852211110     00000000002224455555543111 11235567888888999


Q ss_pred             EEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEEC-CCcee--eeeecCCCCCCCCc
Q 020454          135 ASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEK--IWTAKPPPKNSLGI  210 (326)
Q Consensus       135 v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~-~~~~~--~~~~~~~~~~~~~~  210 (326)
                      |++||.-....     ....+.++. ..-....++.|+|+|.+|+. +....|++||+ +.++.  ++....+.+    .
T Consensus       135 Ih~wdaftG~l-----raSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k----~  204 (406)
T KOG2919|consen  135 IHLWDAFTGKL-----RASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGK----F  204 (406)
T ss_pred             eeeeecccccc-----ccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhccc----c
Confidence            99998543221     112222221 11124669999999999876 56779999999 55542  222211111    1


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT  289 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~  289 (326)
                      ....-+.+++|+|.. ...++.++....+-||.-... .|+..+-+|.+.|+.++|+++|+.|++|+. |-.|-.||++.
T Consensus       205 gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             cccceeeeeeccCCC-CcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            112447899999974 558999999999999987765 788888899999999999999999999886 67899999996


Q ss_pred             -CeEEEEEcceecc-eEEEEEEC--CCCCEEEEeccCccCC
Q 020454          290 -GKLLGCFIGKCSG-SIRSIARH--PTLPIIASCGFLEAAS  326 (326)
Q Consensus       290 -~~~~~~~~~~~~~-~v~~l~~~--p~~~~l~s~s~D~~~~  326 (326)
                       ..++..+..| .+ .-..|.|.  |++++|++|+.||.++
T Consensus       283 ~~~pv~~L~rh-v~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  283 SRDPVYALERH-VGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             ccchhhhhhhh-ccCccceEEEecCCCCceeeccCCCccEE
Confidence             4567777777 44 44455554  8999999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=9e-15  Score=122.71  Aligned_cols=276  Identities=11%  Similarity=0.114  Sum_probs=158.4

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEE-ecCCcEEEEecc-ccceeeeeccc
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-RKNGLTDILNPL-NGDLRVAISNA   94 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~-~~~~~~~~~~~   94 (326)
                      .++...++.|++|++...  +..++...........   .+.+  ++++++|+++ ..++.|.+|++. ++++ ......
T Consensus         5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~~~~~---~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~   76 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE--GALTLLQVVDVPGQVQ---PMVI--SPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES   76 (330)
T ss_pred             EEEcCCCCCEEEEEECCC--CceeeeeEEecCCCCc---cEEE--CCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee
Confidence            455677899999999632  3333433443222211   1222  3455677665 457999999986 3333 222211


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                            ...+....+.+.+        +++.+++++ .++.+.+|+++......    ..+..  .........+.++|+
T Consensus        77 ------~~~~~p~~i~~~~--------~g~~l~v~~~~~~~v~v~~~~~~g~~~----~~~~~--~~~~~~~~~~~~~p~  136 (330)
T PRK11028         77 ------PLPGSPTHISTDH--------QGRFLFSASYNANCVSVSPLDKDGIPV----APIQI--IEGLEGCHSANIDPD  136 (330)
T ss_pred             ------cCCCCceEEEECC--------CCCEEEEEEcCCCeEEEEEECCCCCCC----Cceee--ccCCCcccEeEeCCC
Confidence                  1112344566544        455666655 48899999986432110    11111  122345677889999


Q ss_pred             CCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CCeEEEEeCCCCC-C-
Q 020454          174 EKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQR-R-  249 (326)
Q Consensus       174 ~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg~v~iwd~~~~~-~-  249 (326)
                      ++++++++ .++.|.+||+.+...+.......   ...........+.|+|  +++++++... +++|.+||+.... . 
T Consensus       137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~---~~~~~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE---VTTVEGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             CCEEEEeeCCCCEEEEEEECCCCcccccCCCc---eecCCCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            98885544 56899999997633221100000   0000112345789988  5667777665 8999999987321 1 


Q ss_pred             -ceeEEeec------CCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCCCEEEEe
Q 020454          250 -PVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       250 -~~~~~~~~------~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~  319 (326)
                       .+.++...      ......+.++|++++++++.. ++.|.+|++.......++.++  .....+.+.++|++++|+++
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence             12222211      112335889999999998865 689999999653321122221  01245689999999999987


Q ss_pred             cc-CccC
Q 020454          320 GF-LEAA  325 (326)
Q Consensus       320 s~-D~~~  325 (326)
                      +. ++.+
T Consensus       292 ~~~~~~v  298 (330)
T PRK11028        292 GQKSHHI  298 (330)
T ss_pred             EccCCcE
Confidence            64 5543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=7.8e-17  Score=132.92  Aligned_cols=206  Identities=17%  Similarity=0.162  Sum_probs=147.7

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      ....|+.++.||.+.|.+- .+++...+.        .|.+.+.+-.+.+        ++.-++++++||.|++|+-.  
T Consensus        74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~--------AH~~A~~~gRW~~--------dGtgLlt~GEDG~iKiWSrs--  134 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNK-SARVERSIS--------AHAAAISSGRWSP--------DGAGLLTAGEDGVIKIWSRS--  134 (737)
T ss_pred             CcceEEEEcCCceEEEecc-cchhhhhhh--------hhhhhhhhcccCC--------CCceeeeecCCceEEEEecc--
Confidence            3446999999999999886 455433333        5557777544433        56679999999999999833  


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                              |.++.--.....+|+|++|.|+.+-++.+ ..+.+.|=-+.....+.+.+.|.         .-|.++.|+|
T Consensus       135 --------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHD---------GiiL~~~W~~  196 (737)
T KOG1524|consen  135 --------GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHD---------GLVLSLSWST  196 (737)
T ss_pred             --------chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccC---------cEEEEeecCc
Confidence                    23322223346789999999987555443 34566666665555544445543         4578999998


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  303 (326)
                      ..+  ++++|+.|-..++||.. + +++..-..|+.+|++++|.|+ ..++.|+.+ +++            +.....+.
T Consensus       197 ~s~--lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GS  258 (737)
T KOG1524|consen  197 QSN--IIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGS  258 (737)
T ss_pred             ccc--ceeecCCceeEEeeccc-C-cccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCCccc
Confidence            543  99999999999999987 3 467777889999999999999 666666543 333            32223789


Q ss_pred             EEEEEECCCCCEEEEeccCcc
Q 020454          304 IRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      |..++|++||..++.|..-|.
T Consensus       259 ifnlsWS~DGTQ~a~gt~~G~  279 (737)
T KOG1524|consen  259 IFNLSWSADGTQATCGTSTGQ  279 (737)
T ss_pred             eEEEEEcCCCceeeccccCce
Confidence            999999999999988876654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.2e-17  Score=130.64  Aligned_cols=186  Identities=18%  Similarity=0.146  Sum_probs=136.0

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      ++..+.+++.||.+++|++....         .......+...|.++.|+|++++|++-+.| ..+||+.+++..+....
T Consensus       155 ~gs~latgg~dg~lRv~~~Ps~~---------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  155 DGSKLATGGTDGTLRVWEWPSML---------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             CCCEeeeccccceEEEEecCcch---------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            55789999999999999965432         112223567799999999999999999999 99999999985554433


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCC--CcEEE-EEeCCCeEEEEeCCCCCC----ceeEEeecCCceEEEEecCCCCeEE
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDD--HRKFV-AGTNDHQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIY  274 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~-~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~i~~v~~s~~~~~l~  274 (326)
                      ....+.       ....+.|+..+.  .-+++ ....-+.|+.||+.....    +..+.......|++++.+++|++++
T Consensus       225 ~~~k~~-------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A  297 (398)
T KOG0771|consen  225 PFSKDE-------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA  297 (398)
T ss_pred             Ccccch-------hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence            222111       134556654221  21233 334456788887664433    2233333446799999999999999


Q ss_pred             EEcCCCcEEEEECCCCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          275 IGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       275 ~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .|+.||.|.|++..+.+.++-++ .| ...|+.|.|+|+.+++++.|.|..+
T Consensus       298 lGT~dGsVai~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~  348 (398)
T KOG0771|consen  298 LGTMDGSVAIYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEA  348 (398)
T ss_pred             EeccCCcEEEEEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCce
Confidence            99999999999999998888776 55 9999999999999999999888654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=3.8e-16  Score=138.34  Aligned_cols=235  Identities=20%  Similarity=0.254  Sum_probs=164.4

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      -.+.++++...-.|++||.+.++....+..-.     .-...|..+.+.+.+      +...+++++.||.|+||+--..
T Consensus      1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~------D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQ------DDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeeccc------chhheeeeccCceEEEeccccc
Confidence            34568888888999999999888877776532     223578888888855      5678999999999999973221


Q ss_pred             ccccccccceEEEEEccCC------CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          144 KVSAESSCSTVKSWNVCAS------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                      ..   ..-+.+..|..-.+      +.=.-++|..+..+|+++|.-..|+|||......+..+.....        .-|+
T Consensus      1144 ~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~--------t~vT 1212 (1387)
T KOG1517|consen 1144 KW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS--------TLVT 1212 (1387)
T ss_pred             cc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC--------ccce
Confidence            10   12233444442110      1114456776666677777788999999987776665443322        2355


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--CceeEEeecCCc--eEEEEecCCCCe-EEEEcCCCcEEEEECCCCeE
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETP--IKAVAEEPDSFN-IYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~--i~~v~~s~~~~~-l~~g~~dg~v~iwd~~~~~~  292 (326)
                      ++.-.-. .|+.+++|..||.|++||.|...  ..+..++.|...  |..+.+.++|-. |++|+.+|.|++||++....
T Consensus      1213 aLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1213 ALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             eeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence            6554432 46799999999999999988542  256677777776  999999887654 99999999999999997422


Q ss_pred             EE--EEccee-cc-eEEEEEECCCCCEEEEecc
Q 020454          293 LG--CFIGKC-SG-SIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       293 ~~--~~~~~~-~~-~v~~l~~~p~~~~l~s~s~  321 (326)
                      ..  .+..|. .+ ..+++..|++.++||+|+.
T Consensus      1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             cccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            21  222331 13 4999999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=4.9e-17  Score=134.67  Aligned_cols=257  Identities=10%  Similarity=0.044  Sum_probs=168.8

Q ss_pred             eeeeeecCcccEEEEEecC---CcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           15 LRALTFDSLGLIKVIEARG---EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      --+++++++|.+++|++.+   ......+.+.+|..+..++.++++    ..++..+++|+.||+|+.|++....  ..+
T Consensus       307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v----~~n~~~~ysgg~Dg~I~~w~~p~n~--dp~  380 (577)
T KOG0642|consen  307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV----PSNGEHCYSGGIDGTIRCWNLPPNQ--DPD  380 (577)
T ss_pred             CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe----cCCceEEEeeccCceeeeeccCCCC--Ccc
Confidence            4599999999999999932   223455566677766666554433    3455589999999999999765111  111


Q ss_pred             ccc----CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCceE
Q 020454           92 SNA----GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIA  166 (326)
Q Consensus        92 ~~~----~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~  166 (326)
                      ..+    ......+|.+.+..+.+..        ....|++|+.||+++.|.......         +.+... ..+.-.
T Consensus       381 ds~dp~vl~~~l~Ghtdavw~l~~s~--------~~~~Llscs~DgTvr~w~~~~~~~---------~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  381 DSYDPSVLSGTLLGHTDAVWLLALSS--------TKDRLLSCSSDGTVRLWEPTEESP---------CTFGEPKEHGYPL  443 (577)
T ss_pred             cccCcchhccceeccccceeeeeecc--------cccceeeecCCceEEeeccCCcCc---------cccCCccccCCcc
Confidence            111    0011236778888787654        556799999999999999665432         111111 122234


Q ss_pred             EEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454          167 FSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       167 ~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      ++++-... ..+++...-+.--++++.....+..+.......  .+....+.-+.++|..  .+.+++..|+.|+++|..
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~--~~~~~~in~vVs~~~~--~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG--PRRYPQINKVVSHPTA--DITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc--ccccCccceEEecCCC--CeeEecccCCceeccccc
Confidence            45544333 223333333334445555444433333221111  1112346677778754  389999999999999999


Q ss_pred             CCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454          246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~  299 (326)
                      ++ .++++...|...++++++.|+|.+|++|+.||.+++|.+....+......|
T Consensus       520 ~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  520 TG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             cc-ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            88 678999999999999999999999999999999999999877776665554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=5.5e-14  Score=121.74  Aligned_cols=265  Identities=17%  Similarity=0.262  Sum_probs=179.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEE-ecCCcEEEEeccc-cceeeee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVA-RKNGLTDILNPLN-GDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g-~~dg~i~i~~~~~-~~~~~~~   91 (326)
                      ..++.++.++.+.+|+.....    .....+..... ..+...... ..... +++.. ..|+.+.+|+... ......+
T Consensus        78 ~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  151 (466)
T COG2319          78 ELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL  151 (466)
T ss_pred             cEEEEecCCCcEEEEEcCCCc----eeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence            446667789999999998761    12222222111 233333333 33333 44443 4499999999976 4444444


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  170 (326)
                      .        .+...+..+.+.+        ....+++++. ++.+++|++....        .+..... +...+.++++
T Consensus       152 ~--------~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~v~~~~~  206 (466)
T COG2319         152 E--------GHSESVTSLAFSP--------DGKLLASGSSLDGTIKLWDLRTGK--------PLSTLAG-HTDPVSSLAF  206 (466)
T ss_pred             e--------cCcccEEEEEECC--------CCCEEEecCCCCCceEEEEcCCCc--------eEEeecc-CCCceEEEEE
Confidence            4        4456777777655        4446777775 9999999977522        2333332 5678999999


Q ss_pred             cCCCC-EEEEecCCCeEEEEECCCceeee-eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454          171 DISEK-FSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (326)
Q Consensus       171 ~~~~~-~l~sg~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~  248 (326)
                      +|++. ++++++.|+.|++||...+.... .+..+...         + -..|+|.  +..+++++.|+.+++||.+...
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---------~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS---------V-VSSFSPD--GSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc---------e-eEeECCC--CCEEEEecCCCcEEEeeecCCC
Confidence            99987 56666999999999988666665 34443321         1 1167774  3588899999999999999764


Q ss_pred             CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc--ceecceEEEEEECCCCCEEEEe-ccCc
Q 020454          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASC-GFLE  323 (326)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~-s~D~  323 (326)
                      ..+..+..|...+.++.|+|++..+++++.|+.+.+||..+........  .| ...+..+.|.+++..++.+ ..|+
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~  351 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDG  351 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCC
Confidence            4244445678899999999988888889989899999999887766665  66 7789999994332455555 5554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=7.1e-16  Score=118.06  Aligned_cols=222  Identities=11%  Similarity=0.136  Sum_probs=153.6

Q ss_pred             cccEEEEEecCCcCCCcceeeeccC-CCCCceEEEEEeeeCCCC-CeEEEEecCCcEEEEeccccce---eeeecccCCC
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDL---RVAISNAGDS   97 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~i~~~~~~~~---~~~~~~~~~~   97 (326)
                      ...+|+|.+...+ ........... ....-+.--.+|+|..-+ +++.+++-|-+..|||++++..   ...+-     
T Consensus       120 ~D~LRlWri~~ee-~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI-----  193 (364)
T KOG0290|consen  120 SDFLRLWRIGDEE-SRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI-----  193 (364)
T ss_pred             cCeEEEEeccCcC-CceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE-----
Confidence            3489999998541 11111111111 111111112455655443 4788899999999999988632   22222     


Q ss_pred             CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCC-C
Q 020454           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISE-K  175 (326)
Q Consensus        98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-~  175 (326)
                         .|+..|..+++...       ..+.+++++.||.++++|++..++.       ..+|+-.. ..+...++|+++. +
T Consensus       194 ---AHDKEV~DIaf~~~-------s~~~FASvgaDGSvRmFDLR~leHS-------TIIYE~p~~~~pLlRLswnkqDpn  256 (364)
T KOG0290|consen  194 ---AHDKEVYDIAFLKG-------SRDVFASVGADGSVRMFDLRSLEHS-------TIIYEDPSPSTPLLRLSWNKQDPN  256 (364)
T ss_pred             ---ecCcceeEEEeccC-------ccceEEEecCCCcEEEEEecccccc-------eEEecCCCCCCcceeeccCcCCch
Confidence               67789999997551       3468999999999999999877653       23444333 6788999999876 8


Q ss_pred             EEEEecCC-CeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-----
Q 020454          176 FSLFGGKG-VEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----  248 (326)
Q Consensus       176 ~l~sg~~d-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-----  248 (326)
                      ++|+-..| ..|.|.|++.. .++..+++|.         ..|++++|.|. ....|++++.|.++.+||+....     
T Consensus       257 ymATf~~dS~~V~iLDiR~P~tpva~L~~H~---------a~VNgIaWaPh-S~~hictaGDD~qaliWDl~q~~~~~~~  326 (364)
T KOG0290|consen  257 YMATFAMDSNKVVILDIRVPCTPVARLRNHQ---------ASVNGIAWAPH-SSSHICTAGDDCQALIWDLQQMPRENGE  326 (364)
T ss_pred             HHhhhhcCCceEEEEEecCCCcceehhhcCc---------ccccceEecCC-CCceeeecCCcceEEEEecccccccCCC
Confidence            88886655 56999999864 5677788876         56889999997 45599999999999999987432     


Q ss_pred             CceeEEeecCCceEEEEecCC-CCeEEEEcC
Q 020454          249 RPVMSFDFRETPIKAVAEEPD-SFNIYIGNG  278 (326)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~  278 (326)
                      .|+..+. .++.|..+.|++. +..|+.+..
T Consensus       327 dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  327 DPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             Cchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence            2444554 4578999999965 667776544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=1.1e-16  Score=127.32  Aligned_cols=151  Identities=10%  Similarity=0.117  Sum_probs=122.5

Q ss_pred             cCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCce-------eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454          160 CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (326)
Q Consensus       160 ~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~  231 (326)
                      .|..+|..++|.|- .+.||+|+.|.+|.||++..+-       ++..+.+|.         ..|.-++|+|... +.|+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---------rrVg~V~wHPtA~-NVLl  148 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---------RRVGLVQWHPTAP-NVLL  148 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---------eeEEEEeecccch-hhHh
Confidence            35678999999995 5889999999999999997643       333444443         6688999999754 4899


Q ss_pred             EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc-eEEEEEEC
Q 020454          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARH  310 (326)
Q Consensus       232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~~  310 (326)
                      +++.|.+|.+||+.+++ .+.++. |...|+++.|+.||.+|++.+.|..|+|||.++++++..-.+| .+ .-..+.|-
T Consensus       149 sag~Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h-eG~k~~Raifl  225 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH-EGAKPARAIFL  225 (472)
T ss_pred             hccCCceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc-cCCCcceeEEe
Confidence            99999999999999984 456665 8999999999999999999999999999999999999888777 54 34455676


Q ss_pred             CCCCEEEEeccCcc
Q 020454          311 PTLPIIASCGFLEA  324 (326)
Q Consensus       311 p~~~~l~s~s~D~~  324 (326)
                      -++. |+|.|..++
T Consensus       226 ~~g~-i~tTGfsr~  238 (472)
T KOG0303|consen  226 ASGK-IFTTGFSRM  238 (472)
T ss_pred             ccCc-eeeeccccc
Confidence            7777 777776553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=4.6e-15  Score=133.39  Aligned_cols=245  Identities=14%  Similarity=0.111  Sum_probs=156.7

Q ss_pred             eeeeeecCcccEEEEEecCCc--CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee--e
Q 020454           15 LRALTFDSLGLIKVIEARGEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--A   90 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~--~   90 (326)
                      --+++|+.||+||||+...-.  .+..+-..+|.........+.++.    .+..+|+++.||.|++.+++..+...  .
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEcccccccccee
Confidence            568999999999999987541  233344445654344444444443    33469999999999999987522111  1


Q ss_pred             ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC---CCceEE
Q 020454           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAF  167 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~  167 (326)
                      .....+  .....+.++.+.-+....     ....++.++..+.+..||.....          ..|....   .+.|++
T Consensus      1138 ~~~ri~--n~~~~g~vv~m~a~~~~~-----~S~~lvy~T~~~~iv~~D~r~~~----------~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1138 TQVRIP--NLKKDGVVVSMHAFTAIV-----QSHVLVYATDLSRIVSWDTRMRH----------DAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eeeecc--cccCCCceEEeecccccc-----cceeEEEEEeccceEEecchhhh----------hHHhhhcCccccceeE
Confidence            111111  124456677776554321     22378888999999999977533          2333322   457999


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC--CcEEEEEe-CCCeEEEEeC
Q 020454          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGT-NDHQVRLYDT  244 (326)
Q Consensus       168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~~~~-~dg~v~iwd~  244 (326)
                      +..+|.++++++|...|.+.+||++-+.++...+.        ....+++.+..+|...  .-.+.+++ ..+.|.+|++
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--------PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeecccC--------cccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            99999999999999999999999997777665332        2234677777766533  32344444 6789999999


Q ss_pred             CCCCCceeEEeec-CC------------------ceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          245 SAQRRPVMSFDFR-ET------------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       245 ~~~~~~~~~~~~~-~~------------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .++.. ...+-.. ..                  .....++...+.++++|+.|..|+.||...
T Consensus      1273 ~~g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1273 ETGLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             ccCcc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence            87632 2222211 00                  111223434466888999999999999764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=3.7e-17  Score=132.42  Aligned_cols=215  Identities=8%  Similarity=0.062  Sum_probs=170.3

Q ss_pred             EeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454           58 SIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      .+....++.+|+.|+.-|.|-.+|..++++..++...         ..|..+.++.         ...+++......++|
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LH---------neq~~AVAQK~y~yv  195 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLH---------NEQFFAVAQKKYVYV  195 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhc---------chHHHHhhhhceEEE
Confidence            3456678889999999999999999999998888763         4567677665         346777778888999


Q ss_pred             EEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                      ||-..           ..+..++....|..+.|-|..-+|++++..|.++--|+.+|+.+..+....         ..+.
T Consensus       196 YD~~G-----------tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------G~~~  255 (545)
T KOG1272|consen  196 YDNNG-----------TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------GRTD  255 (545)
T ss_pred             ecCCC-----------cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC---------Cccc
Confidence            98332           223334446689999999999999999999999999999999877654432         2233


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      .+.-.|.  +-.+-+|...|+|.+|.+.+. .|+..+..|.++|.++++.++|+|+++.+.|..++|||++.-..++++.
T Consensus       256 vm~qNP~--NaVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  256 VMKQNPY--NAVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             hhhcCCc--cceEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            4444553  337889999999999999976 7788888999999999999999999999999999999999887777665


Q ss_pred             ceecceEEEEEECCCCCE
Q 020454          298 GKCSGSIRSIARHPTLPI  315 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~~  315 (326)
                      .  ..+...+++|..+.+
T Consensus       333 t--p~~a~~ls~SqkglL  348 (545)
T KOG1272|consen  333 T--PHPASNLSLSQKGLL  348 (545)
T ss_pred             c--CCCccccccccccce
Confidence            3  347788888877643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.71  E-value=2e-16  Score=122.98  Aligned_cols=248  Identities=14%  Similarity=0.179  Sum_probs=160.8

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      -+++++.-|.|||.|+.++     +....+..+...  +-.+-+.+ ...+++++++.|.+|++|++++...+..+.-+ 
T Consensus       107 ~la~~G~~GvIrVid~~~~-----~~~~~~~ghG~s--INeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~-  177 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVVSG-----QCSKNYRGHGGS--INEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV-  177 (385)
T ss_pred             eEEeecceeEEEEEecchh-----hhccceeccCcc--chhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccc-
Confidence            3566669999999999987     443333333322  22333322 23348999999999999999999988887764 


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc-------cccccceEEEEE----------
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-------AESSCSTVKSWN----------  158 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~-------~~~~~~~~~~~~----------  158 (326)
                          ..|.+.|.++.+..        ++.++++++.|.++++|+++..+..       .-..+++.+-+.          
T Consensus       178 ----egHrdeVLSvD~~~--------~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  178 ----EGHRDEVLSVDFSL--------DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             ----ccccCcEEEEEEcC--------CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence                37778999888755        6679999999999999999843210       001111111000          


Q ss_pred             --ccCCCceEEEEEcCCCCEEEEecCCCeEEEEEC-CCceeeeeecCCCCCCC---CcC---CCCceeeeEEeecCCCcE
Q 020454          159 --VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEKIWTAKPPPKNSL---GIF---TPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       159 --~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~-~~~~~~~~~~~~~~~~~---~~~---~~~~v~~~~~~p~~~~~~  229 (326)
                        --|...|-|++|-  |+++++-+-++.|..|.. +-.+.+...+......-   .+.   ...|--..+|.|  -.+.
T Consensus       246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~--~~~~  321 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP--WQKM  321 (385)
T ss_pred             ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH--HHHH
Confidence              0112234455553  588999999999999987 32333222222111110   011   112433444444  4568


Q ss_pred             EEEEeCCCeEEEEeCCCCCCce-eEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          230 FVAGTNDHQVRLYDTSAQRRPV-MSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       230 l~~~~~dg~v~iwd~~~~~~~~-~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ||.|...|.|.+||++....+. .++  ......|...+|+.|+..|+..+.|++|--||..
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999999999764422 122  2345689999999999999999999999999854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=2.2e-14  Score=121.74  Aligned_cols=243  Identities=11%  Similarity=0.114  Sum_probs=173.5

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      ++..+++.++..  .|+.+. +..+.+||...|..+.+++        .|.+.|.++++..        ++..+++|+.|
T Consensus        14 ci~d~afkPDGs--qL~lAA-g~rlliyD~ndG~llqtLK--------gHKDtVycVAys~--------dGkrFASG~aD   74 (1081)
T KOG1538|consen   14 CINDIAFKPDGT--QLILAA-GSRLLVYDTSDGTLLQPLK--------GHKDTVYCVAYAK--------DGKRFASGSAD   74 (1081)
T ss_pred             chheeEECCCCc--eEEEec-CCEEEEEeCCCcccccccc--------cccceEEEEEEcc--------CCceeccCCCc
Confidence            555666665544  355444 3568999999999988877        7778999999866        67889999999


Q ss_pred             CcEEEEEccccccccccccceE--------------------EEEEccC--------CCceEEEEEcCCCCEEEEecCCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTV--------------------KSWNVCA--------SGTIAFSKVDISEKFSLFGGKGV  184 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~--------~~~v~~~~~~~~~~~l~sg~~d~  184 (326)
                      ..|.+|+-..+....-+....+                    ..|....        ...+.+.+|..+|++|+.|-.||
T Consensus        75 K~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nG  154 (1081)
T KOG1538|consen   75 KSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNG  154 (1081)
T ss_pred             eeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCc
Confidence            9999998655432111111111                    1232211        12477889999999999999999


Q ss_pred             eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC---CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce
Q 020454          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (326)
Q Consensus       185 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i  261 (326)
                      +|.|-+-...+.+. +......      ..+|.+++|+|+..   ...+++.....++.+|.+...  .+..-..-+..-
T Consensus       155 TIsiRNk~gEek~~-I~Rpgg~------Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP  225 (1081)
T KOG1538|consen  155 TISIRNKNGEEKVK-IERPGGS------NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDP  225 (1081)
T ss_pred             eEEeecCCCCcceE-EeCCCCC------CCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCCCCc
Confidence            99998643333222 2221111      14577999998632   237888888888888888732  233333334456


Q ss_pred             EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       262 ~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .|+.+.++|.+++.|+.|+.+++|- +.|-.+.++-.. ...|+.++.+|++++++.|.-||++
T Consensus       226 ~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  226 CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             hhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCee
Confidence            7889999999999999999999996 567777777664 8899999999999999999999985

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=3.5e-15  Score=123.24  Aligned_cols=199  Identities=11%  Similarity=0.079  Sum_probs=136.6

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~  145 (326)
                      --|++|-.-|.|.++|....++.+.+..    ........++++.|.+       .++..+++...+|.+++|+.+....
T Consensus       186 ~dllIGf~tGqvq~idp~~~~~sklfne----~r~i~ktsvT~ikWvp-------g~~~~Fl~a~~sGnlyly~~~~~~~  254 (636)
T KOG2394|consen  186 LDLLIGFTTGQVQLIDPINFEVSKLFNE----ERLINKSSVTCIKWVP-------GSDSLFLVAHASGNLYLYDKEIVCG  254 (636)
T ss_pred             cceEEeeccCceEEecchhhHHHHhhhh----cccccccceEEEEEEe-------CCCceEEEEEecCceEEeecccccc
Confidence            3488999999999999876444333322    1123346788888776       3567899999999999998633211


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  225 (326)
                      ++                 -.+....+++..++....-+      ..+..++......         ...|...+|+|  
T Consensus       255 ~t-----------------~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~---------~g~in~f~FS~--  300 (636)
T KOG2394|consen  255 AT-----------------APSYQALKDGDQFAILTSKS------KKTRNPVARWHIG---------EGSINEFAFSP--  300 (636)
T ss_pred             CC-----------------CCcccccCCCCeeEEeeeec------cccCCccceeEec---------cccccceeEcC--
Confidence            10                 11111223444433321100      0011122211111         12467789998  


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE
Q 020454          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~  305 (326)
                      |+++||+.+.||.+||||..++ ..+..++.--+...|++|||||+||++|++|..|.||.+...+++..-++| ...|.
T Consensus       301 DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH-kSWVs  378 (636)
T KOG2394|consen  301 DGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH-KSWVS  378 (636)
T ss_pred             CCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc-cccee
Confidence            7889999999999999999876 434444433467899999999999999999999999999999999999998 99999


Q ss_pred             EEEECC
Q 020454          306 SIARHP  311 (326)
Q Consensus       306 ~l~~~p  311 (326)
                      .++|+|
T Consensus       379 ~VaFDp  384 (636)
T KOG2394|consen  379 VVAFDP  384 (636)
T ss_pred             eEeecc
Confidence            999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=1.8e-15  Score=125.03  Aligned_cols=173  Identities=13%  Similarity=0.125  Sum_probs=128.7

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      ..+.++.++.||.+.+.+-...-      ...+    -.|.+.+.+-+|+|+|.-|+++|+||.|++|.-...-.....+
T Consensus        74 ~~d~~~i~s~DGkf~il~k~~rV------E~sv----~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q  143 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNKSARV------ERSI----SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ  143 (737)
T ss_pred             CcceEEEEcCCceEEEecccchh------hhhh----hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh
Confidence            45689999999999988733211      1111    2345678899999999999999999999999854322111111


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD  281 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~  281 (326)
                                ....|++++|.|+.+ +.+.+.+  +.+.|=-+... ..+..++.|++-|.++.|++..+.|++|++|-.
T Consensus       144 ----------~~~~v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k  209 (737)
T KOG1524|consen  144 ----------NEESIRCARWAPNSN-SIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR  209 (737)
T ss_pred             ----------cCceeEEEEECCCCC-ceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCcee
Confidence                      124689999999643 3444433  55666566654 346788999999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       282 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      .++||-. |..+..-..| +.+|++++|+|+ +.++.+|.
T Consensus       210 fKvWD~~-G~~Lf~S~~~-ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  210 FKIWDAQ-GANLFTSAAE-EYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             EEeeccc-CcccccCChh-ccceeeeeeccc-cceeeeee
Confidence            9999974 7788777777 999999999999 55555654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.69  E-value=9.2e-15  Score=116.45  Aligned_cols=220  Identities=14%  Similarity=0.119  Sum_probs=154.6

Q ss_pred             ecCCcEEEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454           72 RKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (326)
Q Consensus        72 ~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~  150 (326)
                      +..|...+.-+. .|+.-..+..     +.+|.+++..+.|.+.       ++..|++|++|.+|.+|.+......... 
T Consensus        54 sgGgaf~ViPl~k~Gr~d~~~P~-----v~GHt~~vLDi~w~Pf-------nD~vIASgSeD~~v~vW~IPe~~l~~~l-  120 (472)
T KOG0303|consen   54 SGGGAFLVIPLVKTGRMDASYPL-----VCGHTAPVLDIDWCPF-------NDCVIASGSEDTKVMVWQIPENGLTRDL-  120 (472)
T ss_pred             CCCcceeecccccccccCCCCCC-----ccCccccccccccCcc-------CCceeecCCCCceEEEEECCCcccccCc-
Confidence            333444444432 3444333333     3478899998887552       5778999999999999998876532221 


Q ss_pred             cceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          151 CSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                      ...+.... .|...|--+.|||.. +.|++++.|++|.+||+.+++.+..++          |+.-|.++.|+.  +|.+
T Consensus       121 tepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----------hpd~i~S~sfn~--dGs~  187 (472)
T KOG0303|consen  121 TEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----------HPDMVYSMSFNR--DGSL  187 (472)
T ss_pred             ccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----------CCCeEEEEEecc--CCce
Confidence            12333333 457789999999975 899999999999999999999877754          446689999986  6779


Q ss_pred             EEEEeCCCeEEEEeCCCCCCceeEEeecCC-ceEEEEecCCCCeEEEEc---CCCcEEEEECCCCeE---EEEEcceecc
Q 020454          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRET-PIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL---LGCFIGKCSG  302 (326)
Q Consensus       230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~~~~~---~~~~~~~~~~  302 (326)
                      |++.+.|+.|||||.|++ ..+..-..|++ .-..+.|-.+|..+-+|.   .+..+.+||..+.+.   ++.+..  ..
T Consensus       188 l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--Sn  264 (472)
T KOG0303|consen  188 LCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT--SN  264 (472)
T ss_pred             eeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc--CC
Confidence            999999999999999988 55666656654 334456777888555553   467899999776432   334442  44


Q ss_pred             eEEEEEECCCCCEEEEec
Q 020454          303 SIRSIARHPTLPIIASCG  320 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s  320 (326)
                      .|.-=-|.|+..+|.-||
T Consensus       265 Gvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  265 GVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             ceEEeeecCCCCEEEEEe
Confidence            555556778777766655

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.2e-14  Score=115.82  Aligned_cols=277  Identities=12%  Similarity=0.066  Sum_probs=190.1

Q ss_pred             eeeeeecCcccEEEEEecCC-cCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      -.|++|++|-.++||++..- ....+|.+...++ .+...++++.|.  .....+++|..+++|.+-|+++.+.+..+..
T Consensus        69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-~H~SNIF~L~F~--~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~  145 (609)
T KOG4227|consen   69 RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-PHRSNIFSLEFD--LENRFLYSGERWGTVIKHDIETKQSIYVANE  145 (609)
T ss_pred             eEEeecCCcceeeeechHHHHhhcCCCCceeccC-ccccceEEEEEc--cCCeeEecCCCcceeEeeecccceeeeeecc
Confidence            34889999999999998632 1222233333333 333444545443  4455799999999999999988877665553


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEE-EccCCCceEEEEEcC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~  172 (326)
                      .      ...+.|.++...+        .++.+++.+.++.|.+||......       .+..+ -...+.....+.|+|
T Consensus       146 ~------~~~~~VY~m~~~P--------~DN~~~~~t~~~~V~~~D~Rd~~~-------~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  146 N------NNRGDVYHMDQHP--------TDNTLIVVTRAKLVSFIDNRDRQN-------PISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             c------CcccceeecccCC--------CCceEEEEecCceEEEEeccCCCC-------CCceeeecCCCccceeeeecC
Confidence            1      3346888888766        678999999999999999875431       11111 122355788899999


Q ss_pred             CC-CEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCC-CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          173 SE-KFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFT-PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       173 ~~-~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      .. .+|++.+..+-+.+||++... +++......    .+.. ...-.++.|+|  +|+.|++.-...--.+||+.+++.
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~----~L~~~~~~~M~~~~~~--~G~Q~msiRR~~~P~~~D~~S~R~  278 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFK----GLPQENTEWMGSLWSP--SGNQFMSIRRGKCPLYFDFISQRC  278 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccc----cCcccchhhhheeeCC--CCCeehhhhccCCCEEeeeecccc
Confidence            75 788999999999999998654 233322111    1111 11224668888  456777777666677899887756


Q ss_pred             ceeEEeecC------CceEEEEecCCCCeEEEEcCCCcEEEEECCC----------C-------------eEEEEEccee
Q 020454          250 PVMSFDFRE------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G-------------KLLGCFIGKC  300 (326)
Q Consensus       250 ~~~~~~~~~------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----------~-------------~~~~~~~~~~  300 (326)
                      ++.++....      ..+.+++|..+ ..+++|+.+=.|++|.+..          |             +.+..++|| 
T Consensus       279 ~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH-  356 (609)
T KOG4227|consen  279 FVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH-  356 (609)
T ss_pred             eeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc-
Confidence            666665322      24667777644 4599999999999998863          1             234567898 


Q ss_pred             cceEEEEEECCCCCEEEEeccCc
Q 020454          301 SGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       301 ~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ..-++.+.|+|...+|++.|-.+
T Consensus       357 RSv~NQVRF~~H~~~l~SSGVE~  379 (609)
T KOG4227|consen  357 RSVPNQVRFSQHNNLLVSSGVEN  379 (609)
T ss_pred             cccccceeecCCcceEeccchhh
Confidence            99999999999999998887654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.69  E-value=1.7e-16  Score=126.51  Aligned_cols=158  Identities=14%  Similarity=0.120  Sum_probs=127.2

Q ss_pred             CCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeee---eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454          161 ASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       161 ~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                      ..+++.++.|+++.. .++||+.|..|+||-+.....-.   .+.-+.   ..-+|...|+.+.|+|  +|.+|++|+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s---~Ls~H~~aVN~vRf~p--~gelLASg~D~   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLS---SLSRHTRAVNVVRFSP--DGELLASGGDG   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEee---cccCCcceeEEEEEcC--CcCeeeecCCC
Confidence            467999999999875 99999999999999987643221   111110   0112446799999998  56699999999


Q ss_pred             CeEEEEeCC--------C-----CC--CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec
Q 020454          237 HQVRLYDTS--------A-----QR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (326)
Q Consensus       237 g~v~iwd~~--------~-----~~--~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~  301 (326)
                      |.|.+|-..        +     .+  .......+|...|..++|+|+++++++|+.|+.+++||+..|.++..+..| .
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~  165 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-E  165 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-c
Confidence            999999755        1     00  012334468889999999999999999999999999999999999999998 9


Q ss_pred             ceEEEEEECCCCCEEEEeccCcc
Q 020454          302 GSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       302 ~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .-|..++|.|-++++++=|.|+.
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             cccceeecchhhhhhhhhccCcc
Confidence            99999999999999999999873

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=4e-13  Score=106.39  Aligned_cols=223  Identities=11%  Similarity=0.145  Sum_probs=155.6

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC--CcEEEEeccccceeeeeccc
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN--GLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~~~~~~~~   94 (326)
                      |-.|+.+|. ++++.+..     ..  .+....+...++-+-|.  .  .++|..+.+  +.++++++..+..+..+...
T Consensus        20 lsvGs~~Gy-k~~~~~~~-----~k--~~~~~~~~~~IvEmLFS--S--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp   87 (391)
T KOG2110|consen   20 LSVGSKDGY-KIFSCSPF-----EK--CFSKDTEGVSIVEMLFS--S--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP   87 (391)
T ss_pred             EEccCCCce-eEEecCch-----HH--hhcccCCCeEEEEeecc--c--ceeEEEecCCCceEEEEEcccCceEEEEecC
Confidence            445566665 67777654     11  33333444444443332  2  256665555  45999999777766665542


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                               .+|.++..          +.+.|+++-++. |+|||++....     -+++..|. .+...+..+++++.+
T Consensus        88 ---------t~IL~Vrm----------Nr~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~-~n~~gl~AlS~n~~n  141 (391)
T KOG2110|consen   88 ---------TSILAVRM----------NRKRLVVCLEES-IYIYDIKDMKL-----LHTIETTP-PNPKGLCALSPNNAN  141 (391)
T ss_pred             ---------CceEEEEE----------ccceEEEEEccc-EEEEeccccee-----ehhhhccC-CCccceEeeccCCCC
Confidence                     57776664          335677776665 99999886442     12333332 134457778888777


Q ss_pred             CEEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe-EEEEeCCCCCCce
Q 020454          175 KFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPV  251 (326)
Q Consensus       175 ~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~-v~iwd~~~~~~~~  251 (326)
                      .++|.=+  ..|.|.+||+.+.+++..+..|.         ..+.+++|+|  +|.+||+++..|+ ||+|.+.++ +.+
T Consensus       142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~---------~~lAalafs~--~G~llATASeKGTVIRVf~v~~G-~kl  209 (391)
T KOG2110|consen  142 CYLAYPGSTTSGDVVLFDTINLQPVNTINAHK---------GPLAALAFSP--DGTLLATASEKGTVIRVFSVPEG-QKL  209 (391)
T ss_pred             ceEEecCCCCCceEEEEEcccceeeeEEEecC---------CceeEEEECC--CCCEEEEeccCceEEEEEEcCCc-cEe
Confidence            8887632  35889999999999988887765         5688999998  7889999999885 789999987 557


Q ss_pred             eEEeec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          252 MSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       252 ~~~~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+|.-.  ...|.+++|+|++.+|++.+..++|++|.+..
T Consensus       210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            777643  34789999999999999999999999998864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=3.2e-15  Score=125.98  Aligned_cols=193  Identities=14%  Similarity=0.129  Sum_probs=139.5

Q ss_pred             EecCCcEEEEecccc-ceeeee-cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc
Q 020454           71 ARKNGLTDILNPLNG-DLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE  148 (326)
Q Consensus        71 g~~dg~i~i~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~  148 (326)
                      ++..|.|-||++..- ++-... ..+      .....|..++|.+       .++..|+++++||.|++|.+..+... .
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l------~Ngt~vtDl~WdP-------FD~~rLAVa~ddg~i~lWr~~a~gl~-e  664 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGL------FNGTLVTDLHWDP-------FDDERLAVATDDGQINLWRLTANGLP-E  664 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCccccccc------ccCceeeecccCC-------CChHHeeecccCceEEEEEeccCCCC-c
Confidence            455699999999642 221111 110      2235678888654       35678999999999999998865531 1


Q ss_pred             cccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454          149 SSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (326)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  227 (326)
                      .....-++.. .+.+.|++++|||-. +.|++++.|.+|++||+++++....+.+|..         .|.+++|+|  +|
T Consensus       665 ~~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd---------qIf~~AWSp--dG  732 (1012)
T KOG1445|consen  665 NEMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD---------QIFGIAWSP--DG  732 (1012)
T ss_pred             ccCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC---------ceeEEEECC--CC
Confidence            1111222333 356789999999964 8999999999999999999998888888874         467889998  78


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCceeEEeecC-CceEEEEecCCCCeEEEEcCC----CcEEEEECCC
Q 020454          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGS----GDLASVDIRT  289 (326)
Q Consensus       228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~g~~d----g~v~iwd~~~  289 (326)
                      +.+++.+.||+|++|+.++..+++++-.+.. ..--.+.|.-+|+++++.+.|    +.|.+||.++
T Consensus       733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            8999999999999999998877776654321 233456677789888866655    4577787664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=8.6e-13  Score=98.96  Aligned_cols=257  Identities=14%  Similarity=0.120  Sum_probs=162.3

Q ss_pred             eeeecCcccEEEEEecCCc------CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce---
Q 020454           17 ALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---   87 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~---   87 (326)
                      +++|..+|.|-|..+..-.      .+..+++ .+  ..+...+..+.+.++     ++..+.||.|+=|...+...   
T Consensus        25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv-~e--qahdgpiy~~~f~d~-----~Lls~gdG~V~gw~W~E~~es~~   96 (325)
T KOG0649|consen   25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIV-PE--QAHDGPIYYLAFHDD-----FLLSGGDGLVYGWEWNEEEESLA   96 (325)
T ss_pred             EEEecCCCeEEEEEehhhhccccCCCCCccee-ec--cccCCCeeeeeeehh-----heeeccCceEEEeeehhhhhhcc
Confidence            7788999999999975431      1222222 22  233333444444422     44455569999998753221   


Q ss_pred             -eeeecccCCCCC-CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCce
Q 020454           88 -RVAISNAGDSGA-QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (326)
Q Consensus        88 -~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v  165 (326)
                       +...+...|..+ ..+-..|.++...+        ..+.++.++.|+.++-||++...        .-+.++ .|..-|
T Consensus        97 ~K~lwe~~~P~~~~~~evPeINam~ldP--------~enSi~~AgGD~~~y~~dlE~G~--------i~r~~r-GHtDYv  159 (325)
T KOG0649|consen   97 TKRLWEVKIPMQVDAVEVPEINAMWLDP--------SENSILFAGGDGVIYQVDLEDGR--------IQREYR-GHTDYV  159 (325)
T ss_pred             chhhhhhcCccccCcccCCccceeEecc--------CCCcEEEecCCeEEEEEEecCCE--------EEEEEc-CCccee
Confidence             111121111111 11123455555544        45678888899999999987533        223343 456778


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC--CCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF--TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      .++..-.....+++|++||++++||.++++.+..+........ ++  ...||.+++.+.  +  +++ |+....+.+|.
T Consensus       160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~-lRp~~g~wigala~~e--d--Wlv-CGgGp~lslwh  233 (325)
T KOG0649|consen  160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL-LRPDWGKWIGALAVNE--D--WLV-CGGGPKLSLWH  233 (325)
T ss_pred             eeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhh-cCcccCceeEEEeccC--c--eEE-ecCCCceeEEe
Confidence            8888855566778999999999999999998877665443332 22  345888887752  2  555 44567899999


Q ss_pred             CCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~  310 (326)
                      +++. .+...|... .++..+.|.  ...+++++..+.|.-|.+. |.+....+.. .....+..|+
T Consensus       234 Lrss-e~t~vfpip-a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-s~~c~s~s~~  294 (325)
T KOG0649|consen  234 LRSS-ESTCVFPIP-ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVE-STACYSASWQ  294 (325)
T ss_pred             ccCC-CceEEEecc-cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCC-ccceeeeccc
Confidence            9987 567777554 667888884  5578888888899999875 5555555543 4455555555

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.7e-15  Score=123.64  Aligned_cols=282  Identities=16%  Similarity=0.168  Sum_probs=194.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+++-.|-+||+..+     +....|.. .+...+...-|.+.....-+++++.||.|++=.+............
T Consensus       155 d~l~SgSDD~~vv~WdW~~~-----~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl  228 (559)
T KOG1334|consen  155 DVLASGSDDLQVVVWDWVSG-----SPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL  228 (559)
T ss_pred             ceeeccCccceEEeehhhcc-----Cccccccc-ccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence            46899999999999999876     44444442 3444444444556666667999999999999877544443322222


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC--CceEEEEEcC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVDI  172 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~  172 (326)
                           ..|.+++.-++..+.       ....++++++|+.+.-.|+.......     .+..-.....  -....++.+|
T Consensus       229 -----~~h~g~vhklav~p~-------sp~~f~S~geD~~v~~~Dlr~~~pa~-----~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  229 -----APHEGPVHKLAVEPD-------SPKPFLSCGEDAVVFHIDLRQDVPAE-----KFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             -----ccccCccceeeecCC-------CCCcccccccccceeeeeeccCCccc-----eeeeeccCCccceeeeeEecCC
Confidence                 256678877776552       34679999999999999987654221     1111111111  2577889999


Q ss_pred             CC-CEEEEecCCCeEEEEECCCcee------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454          173 SE-KFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       173 ~~-~~l~sg~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      .. +++++|+.|..+++||.+.-..      +.++-.+.   +.-..+..|++++|+..  +.-|++.-.|-.|+++...
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h---l~~d~~v~ITgl~Ysh~--~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH---LVEDDPVNITGLVYSHD--GSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCcc---ccccCcccceeEEecCC--ccceeeeecccceEEeccc
Confidence            76 5899999999999999875321      12222111   11134567999999853  3356777778899999543


Q ss_pred             CCC-----------CceeE-EeecCC--ceEEEE-ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454          246 AQR-----------RPVMS-FDFRET--PIKAVA-EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       246 ~~~-----------~~~~~-~~~~~~--~i~~v~-~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~  310 (326)
                      .+.           +.+.. +++|..  .|..+- |-|...|+++|+.=|.|+||+-.+++.+.-+.+. ..-|+||.-|
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEpH  445 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEPH  445 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCCC
Confidence            221           11222 555533  455655 4578899999999999999999999999888886 6699999999


Q ss_pred             CCCCEEEEeccCccC
Q 020454          311 PTLPIIASCGFLEAA  325 (326)
Q Consensus       311 p~~~~l~s~s~D~~~  325 (326)
                      |--++||++|.|.-+
T Consensus       446 P~~PvLAsSGid~DV  460 (559)
T KOG1334|consen  446 PHLPVLASSGIDHDV  460 (559)
T ss_pred             CCCchhhccCCccce
Confidence            999999999998643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.66  E-value=3.8e-13  Score=116.48  Aligned_cols=227  Identities=20%  Similarity=0.263  Sum_probs=160.9

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccc-eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEEEEec-CCcEEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTT-KGKASMR  138 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~-~g~v~i~  138 (326)
                      ...+..++.++.|+.+.+|+...+. ....+...       +...+..+.... .      ... .++..+. ++.+.+|
T Consensus        74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~------~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-------HDSSVSKLALSS-P------DGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-------CCCceeeEEEEC-C------CcceEEeccCCCCccEEEE
Confidence            3445568888899999999997765 44444421       112344343311 0      233 4444444 8999999


Q ss_pred             EccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                      ++...        ......-..+...|..+.++|++.++++++. |+.+++|++.....+..+..|.         ..|.
T Consensus       140 ~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~  202 (466)
T COG2319         140 DLSTP--------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---------DPVS  202 (466)
T ss_pred             EecCC--------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC---------CceE
Confidence            97641        1122222345678889999999998888885 9999999999866666665533         5688


Q ss_pred             eeEEeecCCCc-EEEEEeCCCeEEEEeCCCCCCcee-EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE-EE
Q 020454          218 SAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LG  294 (326)
Q Consensus       218 ~~~~~p~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~  294 (326)
                      +++|+|  ++. .+++++.|+.|++||.+.. ..+. .+..|.... ...|+|++.++++++.|+.+++|+++.... +.
T Consensus       203 ~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  278 (466)
T COG2319         203 SLAFSP--DGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR  278 (466)
T ss_pred             EEEEcC--CcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence            999996  443 5555589999999998854 4444 466666654 338999998889999999999999997664 44


Q ss_pred             EEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          295 CFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .+.+| ...|.++.|+|++..+++++.|+.
T Consensus       279 ~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~  307 (466)
T COG2319         279 TLSGH-SSSVLSVAFSPDGKLLASGSSDGT  307 (466)
T ss_pred             EEecC-CccEEEEEECCCCCEEEEeeCCCc
Confidence            45566 899999999998888888888854

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=4.7e-15  Score=112.10  Aligned_cols=156  Identities=14%  Similarity=0.180  Sum_probs=115.3

Q ss_pred             ceEEEEecCCcEEEEEcccccccccc-ccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~  202 (326)
                      -.+++|.++|.+.+||++.......- ....+..=...+.++|.++.+.+.-..=++|+.+..+..|++...........
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            46889999999999999875321110 01111111234578899999998666666889999999999874321111100


Q ss_pred             CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v  282 (326)
                      .    ..+.+ ..|..+..-|  |++.+|+++.|++||+|..++. +|+..++.|...|.+++|+|+...+|+++.|++|
T Consensus       246 e----~~lkn-pGv~gvrIRp--D~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  246 E----ITLKN-PGVSGVRIRP--DGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             e----EEecC-CCccceEEcc--CCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence            0    01111 2367778877  7789999999999999999998 7899999999999999999999999999999999


Q ss_pred             EEEEC
Q 020454          283 ASVDI  287 (326)
Q Consensus       283 ~iwd~  287 (326)
                      .+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=8.7e-14  Score=116.07  Aligned_cols=277  Identities=15%  Similarity=0.129  Sum_probs=182.2

Q ss_pred             cccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec
Q 020454            3 RTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (326)
Q Consensus         3 ~~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~   82 (326)
                      +++++.++-.+.+.+++|...-.||+||+..       +...|..+-..+.+--.-..++-.  .++.-..|++|.+-.-
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikvydlan-------LSLKFERhlDae~V~feiLsDD~S--K~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-------LSLKFERHLDAEVVDFEILSDDYS--KSVFLQNDRTIEFHAK  123 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEEEEccc-------ceeeeeecccccceeEEEeccchh--hheEeecCceeeehhh
Confidence            3566777777889999999999999999983       444554444443333222222222  2566677888877543


Q ss_pred             cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      -.......+..           .-..+.+..        ...-|+.++....|+-++++...        -+.-+.. ..
T Consensus       124 ~G~hy~~RIP~-----------~GRDm~y~~--------~scDly~~gsg~evYRlNLEqGr--------fL~P~~~-~~  175 (703)
T KOG2321|consen  124 YGRHYRTRIPK-----------FGRDMKYHK--------PSCDLYLVGSGSEVYRLNLEQGR--------FLNPFET-DS  175 (703)
T ss_pred             cCeeeeeecCc-----------CCccccccC--------CCccEEEeecCcceEEEEccccc--------ccccccc-cc
Confidence            21111111221           112222211        23456666667776666665433        2222222 23


Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCC--CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                      ..++++.+++-..+|++|+.+|.|..||.+....+..+.....  ..........|+++.|.-  +|-.+++|+.+|.|.
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d--~gL~~aVGts~G~v~  253 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD--DGLHVAVGTSTGSVL  253 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC--CceeEEeeccCCcEE
Confidence            6899999999999999999999999999998765554432211  000111224699999974  577899999999999


Q ss_pred             EEeCCCCCCceeEEe-ecCCceEEEEecCC--CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          241 LYDTSAQRRPVMSFD-FRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       241 iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~--~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      |||+|+. +|+.... ....+|..+.|.+.  +..+++ .....++|||-.+|+....+..  ...++.+++-|++.+++
T Consensus       254 iyDLRa~-~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  254 IYDLRAS-KPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFF  329 (703)
T ss_pred             EEEcccC-CceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEE
Confidence            9999987 5554433 44568999999776  344554 4456899999999999887773  56799999999998888


Q ss_pred             EeccC
Q 020454          318 SCGFL  322 (326)
Q Consensus       318 s~s~D  322 (326)
                      ++-.+
T Consensus       330 ~Ane~  334 (703)
T KOG2321|consen  330 TANES  334 (703)
T ss_pred             EecCC
Confidence            87544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=5.1e-14  Score=109.37  Aligned_cols=235  Identities=14%  Similarity=0.122  Sum_probs=166.2

Q ss_pred             eeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           60 DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        60 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      ++.++...+|++..+..|.||.....+.-...+.+     +.|+..+.++.+.+        ..+.|++|+.|..-++|.
T Consensus        17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-----s~Hd~~vtgvdWap--------~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen   17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-----SEHDKIVTGVDWAP--------KSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             eecCCCceEEeccCCceEEEEEecCCCCceeceeh-----hhhCcceeEEeecC--------CCCceeEccCCCCccccc
Confidence            44455557999999999999998777644444443     36778899988766        567999999999999998


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      ....    +....++.+.++  +...+++.|+|.++.||+|+....|.||-++..+.=+..+..+     ......|+++
T Consensus        84 ~~~~----~~WkptlvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik-----kPirStv~sl  152 (361)
T KOG1523|consen   84 QPSG----GTWKPTLVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK-----KPIRSTVTSL  152 (361)
T ss_pred             cCCC----CeeccceeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-----Cccccceeee
Confidence            7422    122334444443  5689999999999999999999999999887655443332222     1233579999


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCC-----CC--------C----CceeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTS-----AQ--------R----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~-----~~--------~----~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v  282 (326)
                      .|+|+  +-+|++|+.|++.|+|...     ..        +    +.+.++....+.+..+.|+|+|..|+=.+.|..+
T Consensus       153 dWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v  230 (361)
T KOG1523|consen  153 DWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV  230 (361)
T ss_pred             eccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence            99994  4589999999999999732     10        0    0123333456789999999999999988999999


Q ss_pred             EEEECCCCe-EEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          283 ASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       283 ~iwd~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      .+-|..... .+...... .-+..++.|-.+. .++.+|.|
T Consensus       231 ~~~da~~p~~~v~~~~~~-~lP~ls~~~ise~-~vv~ag~~  269 (361)
T KOG1523|consen  231 SFVDAAGPSERVQSVATA-QLPLLSVSWISEN-SVVAAGYD  269 (361)
T ss_pred             EEeecCCCchhccchhhc-cCCceeeEeecCC-ceeecCCC
Confidence            999987664 33333333 4567777775443 23344444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.6e-13  Score=108.48  Aligned_cols=225  Identities=15%  Similarity=0.137  Sum_probs=146.9

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      .++++..|..|++||-.. +....++.       ..+..+.++++-+.       ....++.++ .+.|.+|..+.....
T Consensus       112 ~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPl-------saselavgC-r~gIciW~~s~tln~  175 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPL-------SASELAVGC-RAGICIWSDSRTLNA  175 (445)
T ss_pred             hhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccC-------Ccceeeeee-cceeEEEEcCccccc
Confidence            489999999999999855 33344443       33467888986541       123444444 455789987754322


Q ss_pred             c----ccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          147 A----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       147 ~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                      .    +...+...+.+.....+|++|.|.++|..+++++. |..|.|||..++..+.-..         +....++-+.|
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---------~glgg~slLkw  246 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP---------KGLGGFSLLKW  246 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc---------cCCCceeeEEE
Confidence            1    22344455666566678999999999999998885 4669999999876543321         11245778899


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC--Ce-------
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT--GK-------  291 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~--~~-------  291 (326)
                      +|  ++.+|++++-|+..++|+...... ...+....+.|...+|+|+|++|+ +.+..-.++-..+..  +.       
T Consensus       247 SP--dgd~lfaAt~davfrlw~e~q~wt-~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~  323 (445)
T KOG2139|consen  247 SP--DGDVLFAATCDAVFRLWQENQSWT-KERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI  323 (445)
T ss_pred             cC--CCCEEEEecccceeeeehhcccce-ecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence            99  566999999999999996553322 233334456899999999999887 444333333222221  10       


Q ss_pred             ----EEEEEc------c--eecceEEEEEECCCCCEEEEe
Q 020454          292 ----LLGCFI------G--KCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       292 ----~~~~~~------~--~~~~~v~~l~~~p~~~~l~s~  319 (326)
                          ++..++      +  -+-+++.+|+|+|.|.+||+.
T Consensus       324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~  363 (445)
T KOG2139|consen  324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI  363 (445)
T ss_pred             eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence                011111      0  024578899999999999875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=8e-14  Score=111.04  Aligned_cols=208  Identities=12%  Similarity=0.070  Sum_probs=149.0

Q ss_pred             CeEEEEecCCcEEEEeccccce----eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC--CcEEEEE
Q 020454           66 PLLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRS  139 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~--g~v~i~~  139 (326)
                      ..|+++-.+|.+.+|....+..    +..+..        + ..+..+...+       .....+++|+..  ..+.+||
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~--------g-~g~~~~r~~~-------~~p~Iva~GGke~~n~lkiwd  179 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--------G-PGLYDVRQTD-------TDPYIVATGGKENINELKIWD  179 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeeec--------C-CceeeeccCC-------CCCceEecCchhcccceeeee
Confidence            4688999999999999874432    112221        1 2233333322       123445558888  8899999


Q ss_pred             ccccccccccccceEEEEEccCC----------CceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee-eeeecCCCCC
Q 020454          140 IEVTKVSAESSCSTVKSWNVCAS----------GTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKN  206 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~  206 (326)
                      ++..          .++|..+..          --++.+.|-+.  ...||+++.-+.+++||.+.++. +..+...   
T Consensus       180 le~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---  246 (412)
T KOG3881|consen  180 LEQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL---  246 (412)
T ss_pred             cccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---
Confidence            8753          345554322          12567778776  68899999999999999997654 4443332   


Q ss_pred             CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                            ...++++...|  +++.++++..-+.+..||++.++-....+.+..+.|+++..+|...++++++-|+.|+|+|
T Consensus       247 ------E~~is~~~l~p--~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  247 ------ENPISSTGLTP--SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             ------cCcceeeeecC--CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence                  13477888877  5669999999999999999987544445888889999999999999999999999999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEECCC
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      +++.++++..-  ....++.|-+.++
T Consensus       319 ~ktrkll~kvY--vKs~lt~il~~~~  342 (412)
T KOG3881|consen  319 IKTRKLLHKVY--VKSRLTFILLRDD  342 (412)
T ss_pred             cccchhhhhhh--hhccccEEEecCC
Confidence            99977776543  2556777777553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=6.2e-13  Score=116.16  Aligned_cols=278  Identities=13%  Similarity=0.102  Sum_probs=169.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCC-CeEEEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      .+.+.+.....|+|+...++     ..+....  .+...+.......+... .++.+.+.+|.|++||...+++++.+..
T Consensus        28 ~k~l~~~~~~~V~VyS~~Tg-----~~i~~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   28 AKFLFLCTGNFVKVYSTATG-----ECITSLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             CcEEEEeeCCEEEEEecchH-----hhhhhcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            55666666778999999987     2222222  22233333444433332 5788999999999999999999888775


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccccccccccceEEEEEc------cCCCceE
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNV------CASGTIA  166 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~  166 (326)
                      -         .++..+.+.+.+.     .....+ .+..+-.+ +....... ...+....+.....      .....-.
T Consensus       101 ~---------~~v~~~~~~~~~a-----~~s~~~~~s~~~~~~-~~~~s~~~-~~q~~~~~~~t~~~~~~d~~~~~~~~~  164 (792)
T KOG1963|consen  101 N---------LPVHALVYKPAQA-----DISANVYVSVEDYSI-LTTFSKKL-SKQSSRFVLATFDSAKGDFLKEHQEPK  164 (792)
T ss_pred             C---------CceeEEEechhHh-----CccceeEeeccccee-eeeccccc-ccceeeeEeeeccccchhhhhhhcCCc
Confidence            2         2333333212211     111222 22222111 11111000 00000000000000      0011135


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      ++..++.+.+.+.. .+..+.+|+..+.....  ..+.   ....|...+++.+++|+  +++++++..||+|.+|.--.
T Consensus       165 ~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~--~~~~---~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~  236 (792)
T KOG1963|consen  165 SIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHT--SSRD---ITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFG  236 (792)
T ss_pred             cEEEcCCceEEEEE-EeeeEEEEEecccceee--ccch---hhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccc
Confidence            67777777776664 45578899987655211  1111   11223334788999994  56999999999999997322


Q ss_pred             ---CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          247 ---QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       247 ---~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                         .......+..|...|++++|+++|.+|++|+..|.+.+|.+.+++ .+-++. ..++|..+.++||+.+.+..-.|.
T Consensus       237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR-Lgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR-LGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             cccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccc-cCCeeEEEEEcCCCCeEEEEecCc
Confidence               112346677899999999999999999999999999999999988 222343 478999999999999888888886


Q ss_pred             cC
Q 020454          324 AA  325 (326)
Q Consensus       324 ~~  325 (326)
                      .+
T Consensus       315 qI  316 (792)
T KOG1963|consen  315 QI  316 (792)
T ss_pred             eE
Confidence            53

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.4e-14  Score=120.22  Aligned_cols=230  Identities=13%  Similarity=0.130  Sum_probs=156.5

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+..++-+  ..|..++.+|++|+.|-.+.|||....+.+..+..       +|...|.+..+.+..      .+..+++
T Consensus        48 GH~GCVN~--LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~t------nnriv~s  112 (758)
T KOG1310|consen   48 GHTGCVNC--LEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYT------NNRIVLS  112 (758)
T ss_pred             cccceecc--eeecCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccC------CCeEEEe
Confidence            34444443  45677788999999999999999988888888776       788889988877644      5678999


Q ss_pred             EecCCcEEEEEcccccc--ccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454          129 CTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  205 (326)
                      |..|..|+++|++....  .......+.+.|.. +...|..++..|++ +.+.++++||+|+-+|++....-........
T Consensus       113 gAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~  191 (758)
T KOG1310|consen  113 GAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS  191 (758)
T ss_pred             ccCcceEEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence            99999999999985331  11112234556653 35678888898988 8999999999999999986321111000000


Q ss_pred             CCCCc-CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----------------ceeEEe-ecC--------
Q 020454          206 NSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------------PVMSFD-FRE--------  258 (326)
Q Consensus       206 ~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-----------------~~~~~~-~~~--------  258 (326)
                      ....+ .......++..+|. +..+|++|+.|-..++||.|...+                 ++..+. .|-        
T Consensus       192 ~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  192 ILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            00000 01124567888887 456999999999999999542211                 122221 110        


Q ss_pred             C---ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454          259 T---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (326)
Q Consensus       259 ~---~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~  295 (326)
                      .   -++-++|+|+|.-|++.-..-.|++||+..++....
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence            1   256788999999888766666899999987765433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=9.7e-14  Score=106.19  Aligned_cols=100  Identities=21%  Similarity=0.305  Sum_probs=79.4

Q ss_pred             CceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC---CCcEEEEECC
Q 020454          214 TWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIR  288 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~  288 (326)
                      ..|.+++|+|+  ++.|++  |..++.|.+||++ . .++..+  +...+..+.|+|+|++|++++.   .|.|.+||.+
T Consensus        60 ~~I~~~~WsP~--g~~favi~g~~~~~v~lyd~~-~-~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   60 GPIHDVAWSPN--GNEFAVIYGSMPAKVTLYDVK-G-KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CceEEEEECcC--CCEEEEEEccCCcccEEEcCc-c-cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            45999999994  446554  4467899999997 3 445555  4567889999999999998764   4679999999


Q ss_pred             CCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      +.+.+.++..   ..+..++|+|+|++|+++...
T Consensus       134 ~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  134 KKKKISTFEH---SDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             CCEEeecccc---CcEEEEEEcCCCCEEEEEEec
Confidence            9999887763   257899999999999998753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.60  E-value=1.3e-11  Score=103.69  Aligned_cols=241  Identities=12%  Similarity=0.092  Sum_probs=137.3

Q ss_pred             eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccc-cceeeeecccC
Q 020454           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAISNAG   95 (326)
Q Consensus        18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~-~~~~~~~~~~~   95 (326)
                      +++..++.|.+|++..  .+.............   ...+.+  ++++++|+++. .++.|.+|++++ +......... 
T Consensus        51 v~~~~~~~i~~~~~~~--~g~l~~~~~~~~~~~---p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-  122 (330)
T PRK11028         51 VGVRPEFRVLSYRIAD--DGALTFAAESPLPGS---PTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-  122 (330)
T ss_pred             EEECCCCcEEEEEECC--CCceEEeeeecCCCC---ceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-
Confidence            3445678899999873  222222222111111   112333  34555666665 489999999964 3222222211 


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           .+.....++.+.+        ++..++ +...++.|.+|+++..........   .............+.|+|++
T Consensus       123 -----~~~~~~~~~~~~p--------~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~---~~~~~~~g~~p~~~~~~pdg  186 (330)
T PRK11028        123 -----EGLEGCHSANIDP--------DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP---AEVTTVEGAGPRHMVFHPNQ  186 (330)
T ss_pred             -----cCCCcccEeEeCC--------CCCEEEEeeCCCCEEEEEEECCCCcccccCC---CceecCCCCCCceEEECCCC
Confidence                 1111233344333        445554 555679999999875321110000   11122234557789999999


Q ss_pred             CEEEEecC-CCeEEEEECCC--ce--eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCC
Q 020454          175 KFSLFGGK-GVEVNVWDLDK--CE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQR  248 (326)
Q Consensus       175 ~~l~sg~~-d~~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~  248 (326)
                      ++++++.. ++.|.+||+..  ++  .+..+...+..   ...+.+...+.++|  ++++++++. .++.|.+|++....
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~i~~~p--dg~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD---FSDTRWAADIHITP--DGRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc---CCCCccceeEEECC--CCCEEEEecCCCCeEEEEEEeCCC
Confidence            99987766 89999999973  22  22222222111   11223455688888  566777774 47899999986442


Q ss_pred             Cc---eeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECC
Q 020454          249 RP---VMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR  288 (326)
Q Consensus       249 ~~---~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~  288 (326)
                      ..   +...... .....++++|+|++|+++.. +++|.+|++.
T Consensus       262 ~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        262 SVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            21   1222222 24567899999999997775 8899999875

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.9e-13  Score=109.16  Aligned_cols=240  Identities=14%  Similarity=0.090  Sum_probs=165.0

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee---eeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR---VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l  126 (326)
                      +..++-++-|...  +.+|++|+.|..+++|+++.--..   +.+....    ..|...|.+|.+-.        ...++
T Consensus        55 H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~----~~H~SNIF~L~F~~--------~N~~~  120 (609)
T KOG4227|consen   55 HTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME----HPHRSNIFSLEFDL--------ENRFL  120 (609)
T ss_pred             hccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceecc----CccccceEEEEEcc--------CCeeE
Confidence            4445556666544  779999999999999998632221   2222211    24557788898644        45689


Q ss_pred             EEEecCCcEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-e--eeeecC
Q 020454          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-K--IWTAKP  202 (326)
Q Consensus       127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~--~~~~~~  202 (326)
                      ++|..+++|...|++..+        ++.++.... .+.|+.|..+|..+.|++.+.++.|.+||.+... .  .+...+
T Consensus       121 ~SG~~~~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  121 YSGERWGTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             ecCCCcceeEeeecccce--------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence            999999999999988655        555555332 3579999999999999999999999999998644 1  111122


Q ss_pred             CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec------CCceEEEEecCCCCeEEEE
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~i~~v~~s~~~~~l~~g  276 (326)
                               .+...+++.|+|. ...+|++.+..+-+.+||.+....++......      ...-..+.|+|+|+.+.+-
T Consensus       193 ---------~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  193 ---------SGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             ---------CCccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence                     2344668899996 56699999999999999999776665443321      2233567899999999876


Q ss_pred             cCCCcEEEEECCCCeE-EEEEcce-----ecceEEEEEECCCCCEEEEeccC
Q 020454          277 NGSGDLASVDIRTGKL-LGCFIGK-----CSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       277 ~~dg~v~iwd~~~~~~-~~~~~~~-----~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      -....-.+||+.+.++ +.++...     ....+.++.|.-+- -+++||.|
T Consensus       263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~  313 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDH  313 (609)
T ss_pred             hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcc
Confidence            6666667788877544 3333311     02356778886544 47777754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=3.9e-12  Score=99.00  Aligned_cols=210  Identities=13%  Similarity=0.087  Sum_probs=142.0

Q ss_pred             CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (326)
Q Consensus        75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~  154 (326)
                      ..|.|||=...+.+.++...         .+|.++..-          .+.+ +.-..+.|++|.+..+.       +.+
T Consensus        75 NkviIWDD~k~~~i~el~f~---------~~I~~V~l~----------r~ri-Vvvl~~~I~VytF~~n~-------k~l  127 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFN---------SEIKAVKLR----------RDRI-VVVLENKIYVYTFPDNP-------KLL  127 (346)
T ss_pred             ceEEEEecccCcEEEEEEec---------cceeeEEEc----------CCeE-EEEecCeEEEEEcCCCh-------hhe
Confidence            47999996555555555542         678877752          2344 44456789999876432       244


Q ss_pred             EEEEccC-CCceEEEEEcCCCCEEEE-ecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454          155 KSWNVCA-SGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (326)
Q Consensus       155 ~~~~~~~-~~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l  230 (326)
                      +.++... +..+.++.-+.+..+||. |-.-|.|+|-|+...+.  ...+..|.         ..|.+++...  +|.++
T Consensus       128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~---------s~Iacv~Ln~--~Gt~v  196 (346)
T KOG2111|consen  128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD---------SDIACVALNL--QGTLV  196 (346)
T ss_pred             eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc---------CceeEEEEcC--CccEE
Confidence            5555433 445666655555566665 45668999999876554  23344443         5677888875  67799


Q ss_pred             EEEeCCCe-EEEEeCCCCCCceeEEee--cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---E------------
Q 020454          231 VAGTNDHQ-VRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---L------------  292 (326)
Q Consensus       231 ~~~~~dg~-v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~---~------------  292 (326)
                      |++|..|+ |||||..++ ..+.++.-  ....|.+++|||++.+|++++..|+++||.++...   .            
T Consensus       197 ATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l  275 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL  275 (346)
T ss_pred             EEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence            99999985 899999988 56777763  34579999999999999999999999999987522   1            


Q ss_pred             ---------EEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          293 ---------LGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       293 ---------~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                               ..+++-. .++..-++|-.+.+.++..+.||.
T Consensus       276 pky~~S~wS~~~f~l~-~~~~~~~~fg~~~nsvi~i~~Dgs  315 (346)
T KOG2111|consen  276 PKYFSSEWSFAKFQLP-QGTQCIIAFGSETNTVIAICADGS  315 (346)
T ss_pred             chhcccceeEEEEEcc-CCCcEEEEecCCCCeEEEEEeCCc
Confidence                     1112222 445556677766556666777764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=2.4e-13  Score=104.04  Aligned_cols=127  Identities=16%  Similarity=0.192  Sum_probs=93.7

Q ss_pred             eEEEEEccCCCceEEEEEcCCCCEEEE--ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454          153 TVKSWNVCASGTIAFSKVDISEKFSLF--GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~l~s--g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l  230 (326)
                      .+....+...++|..++|+|+++.||+  |..+..|.+||++ ++.+..+..           ..+..+.|+|  +|+++
T Consensus        50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~-----------~~~n~i~wsP--~G~~l  115 (194)
T PF08662_consen   50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT-----------QPRNTISWSP--DGRFL  115 (194)
T ss_pred             ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC-----------CCceEEEECC--CCCEE
Confidence            445555555667999999999987654  4467799999996 555555443           2356889999  56688


Q ss_pred             EEEeC---CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC------CCcEEEEECCCCeEEEEEc
Q 020454          231 VAGTN---DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       231 ~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~------dg~v~iwd~~~~~~~~~~~  297 (326)
                      ++++.   .|.|.+||.++. +.+.+.+  ...++.++|+|+|++|+++..      |+.++||++. |+++.+..
T Consensus       116 ~~~g~~n~~G~l~~wd~~~~-~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVRKK-KKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEccCCCcEEEEEECCCC-EEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            88764   467999999965 4455543  345789999999999997764      7889999984 77766543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.57  E-value=4.6e-13  Score=120.88  Aligned_cols=220  Identities=15%  Similarity=0.170  Sum_probs=147.6

Q ss_pred             EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      |+. .|.++..++        .|...+..++...       .+..++++|+.||+|++|+........ ........|..
T Consensus      1034 W~p-~G~lVAhL~--------Ehs~~v~k~a~s~-------~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~ 1096 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH--------EHSSAVIKLAVSS-------EHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSP 1096 (1431)
T ss_pred             CCc-cceEeehhh--------hccccccceeecC-------CCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEec
Confidence            555 556655555        3334455555433       244799999999999999987644221 22233344553


Q ss_pred             cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce--eeeeecCCCCCCCCcCCCC-ceeeeEEeecCCCcEEEEEeCC
Q 020454          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                       ....+.++..-+.++.+|+++.||.|++.++...+  .........   ..+..++ .|..-+|........++.++..
T Consensus      1097 -~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri---~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1097 -EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI---PNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred             -cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec---ccccCCCceEEeecccccccceeEEEEEec
Confidence             36789999999999999999999999999987521  111100000   0011112 2333333322222378889999


Q ss_pred             CeEEEEeCCCCCCceeE--EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-
Q 020454          237 HQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-  313 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~--~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-  313 (326)
                      +.|..||+++. .-...  .....+.|++++.+|.+..++.|+..|.+.+||++-+.++..+.-....+|+.+..+|.. 
T Consensus      1173 ~~iv~~D~r~~-~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1173 SRIVSWDTRMR-HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred             cceEEecchhh-hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence            99999999975 33333  334568899999999999999999999999999999999888764336789999888743 


Q ss_pred             --CEEEEecc
Q 020454          314 --PIIASCGF  321 (326)
Q Consensus       314 --~~l~s~s~  321 (326)
                        ...+++|.
T Consensus      1252 ~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1252 QESVSVSAGS 1261 (1431)
T ss_pred             CCceEEEecc
Confidence              35555554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.57  E-value=8e-14  Score=108.31  Aligned_cols=153  Identities=10%  Similarity=0.117  Sum_probs=123.3

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCce---eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~  238 (326)
                      .++|+|.+|++++..+|++-....|.||.....+   ....++.|         ...|+.+.|.|.  .+.|++|+.|..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H---------d~~vtgvdWap~--snrIvtcs~drn   78 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH---------DKIVTGVDWAPK--SNRIVTCSHDRN   78 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh---------CcceeEEeecCC--CCceeEccCCCC
Confidence            5689999999999999999999999999987665   33344433         356899999995  448999999999


Q ss_pred             EEEEeCCCCC--CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE---EEEEcceecceEEEEEECCCC
Q 020454          239 VRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       239 v~iwd~~~~~--~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      -++|....+.  +|...+.-++...++|.|+|.++.+++|+....|.||-++...-   .+.++..+...|.+++|+|++
T Consensus        79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence            9999985332  35566667789999999999999999999999999998875432   112222237889999999999


Q ss_pred             CEEEEeccCccC
Q 020454          314 PIIASCGFLEAA  325 (326)
Q Consensus       314 ~~l~s~s~D~~~  325 (326)
                      -+|++||.|+..
T Consensus       159 VLlaaGs~D~k~  170 (361)
T KOG1523|consen  159 VLLAAGSTDGKC  170 (361)
T ss_pred             ceecccccCcce
Confidence            999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.3e-12  Score=113.14  Aligned_cols=236  Identities=13%  Similarity=0.073  Sum_probs=142.6

Q ss_pred             cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCC
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGA   99 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~   99 (326)
                      +..|.+||..+.  ...    .+...  ...+.  +..++++++.|+..+.+   ..|.+||+.+++... +...     
T Consensus       183 ~~~i~i~d~dg~--~~~----~lt~~--~~~v~--~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~-----  246 (429)
T PRK01742        183 PYEVRVADYDGF--NQF----IVNRS--SQPLM--SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASF-----  246 (429)
T ss_pred             eEEEEEECCCCC--Cce----EeccC--CCccc--cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecC-----
Confidence            468899998765  111    22211  22222  33445667778877654   369999998776422 2211     


Q ss_pred             CCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (326)
Q Consensus       100 ~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  178 (326)
                       .  +......+.+        ++..|+.+ ..+|...+|.++...       +.++... .+...+....|+|+++.|+
T Consensus       247 -~--g~~~~~~wSP--------DG~~La~~~~~~g~~~Iy~~d~~~-------~~~~~lt-~~~~~~~~~~wSpDG~~i~  307 (429)
T PRK01742        247 -R--GHNGAPAFSP--------DGSRLAFASSKDGVLNIYVMGANG-------GTPSQLT-SGAGNNTEPSWSPDGQSIL  307 (429)
T ss_pred             -C--CccCceeECC--------CCCEEEEEEecCCcEEEEEEECCC-------CCeEeec-cCCCCcCCEEECCCCCEEE
Confidence             0  1122344433        45566665 468877777654321       1122221 1234577899999998766


Q ss_pred             Ee-cCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee
Q 020454          179 FG-GKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (326)
Q Consensus       179 sg-~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  256 (326)
                      .. ..++..+||++.... ....+ .+.         .  ....|+|  +++.++..+.++ +.+||+.++. . ..+..
T Consensus       308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~---------~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~-~-~~lt~  370 (429)
T PRK01742        308 FTSDRSGSPQVYRMSASGGGASLV-GGR---------G--YSAQISA--DGKTLVMINGDN-VVKQDLTSGS-T-EVLSS  370 (429)
T ss_pred             EEECCCCCceEEEEECCCCCeEEe-cCC---------C--CCccCCC--CCCEEEEEcCCC-EEEEECCCCC-e-EEecC
Confidence            54 467888888865321 11111 111         1  2356787  566887777665 5559998763 2 22221


Q ss_pred             cCCceEEEEecCCCCeEEEEcCCCcEEEEEC--CCCeEEEEEcceecceEEEEEECCC
Q 020454          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDI--RTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       257 ~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~--~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      . .....+.|+|+|++|+.++.+|...+|++  .+|+...++.+| .+.+...+|+|-
T Consensus       371 ~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~-~g~~~~p~wsp~  426 (429)
T PRK01742        371 T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS-DGQVKFPAWSPY  426 (429)
T ss_pred             C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-CCCCCCcccCCC
Confidence            1 23356789999999999999998888876  368888888887 888999999984

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=3.2e-14  Score=118.07  Aligned_cols=157  Identities=15%  Similarity=0.270  Sum_probs=122.5

Q ss_pred             cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (326)
Q Consensus       160 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v  239 (326)
                      .|.+.|++++|+.+|.+|++|+.|-.+.|||.-..+++..+...        |...|.++.|.|..+.+.+++|..|..|
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------HtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------HTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------cccceeEEeeeccCCCeEEEeccCcceE
Confidence            45778999999999999999999999999999877776665432        2245889999998788899999999999


Q ss_pred             EEEeCCC---------CCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeE----------EEEEcce
Q 020454          240 RLYDTSA---------QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL----------LGCFIGK  299 (326)
Q Consensus       240 ~iwd~~~---------~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~----------~~~~~~~  299 (326)
                      ++||+..         .+.+...+.-|...|..++-.|++ +.+.++++||+++.+|++....          +..+...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999884         223456666788899999999998 6777999999999999986321          1112122


Q ss_pred             ecceEEEEEECCCC-CEEEEeccCccC
Q 020454          300 CSGSIRSIARHPTL-PIIASCGFLEAA  325 (326)
Q Consensus       300 ~~~~v~~l~~~p~~-~~l~s~s~D~~~  325 (326)
                       .-...++..+|.. .+|+.|+.|-.|
T Consensus       200 -lielk~ltisp~rp~~laVGgsdpfa  225 (758)
T KOG1310|consen  200 -LIELKCLTISPSRPYYLAVGGSDPFA  225 (758)
T ss_pred             -hheeeeeeecCCCCceEEecCCCchh
Confidence             2356689999965 578888887654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.2e-11  Score=96.36  Aligned_cols=170  Identities=14%  Similarity=0.124  Sum_probs=118.1

Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECC-CceeeeeecCCCCCCCCcC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~  211 (326)
                      +.+.|||-..+        ..+..+..  ..+|..+.+.+  ..|++. .++.|.+|... +.+.++.+....       
T Consensus        75 NkviIWDD~k~--------~~i~el~f--~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~~-------  134 (346)
T KOG2111|consen   75 NKVIIWDDLKE--------RCIIELSF--NSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETRS-------  134 (346)
T ss_pred             ceEEEEecccC--------cEEEEEEe--ccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeeccc-------
Confidence            46788882221        13333332  46788888875  334332 56799999987 445555443322       


Q ss_pred             CCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCCCc-EEEEECC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIR  288 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~-v~iwd~~  288 (326)
                      .|....  +..|..+..+||- |-.-|.|+|-|+...+. +-..+..|++.|.+++++.+|..+|+++..|+ |+|||..
T Consensus       135 NPkGlC--~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  135 NPKGLC--SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE  212 (346)
T ss_pred             CCCceE--eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence            112222  2333323334443 45679999999886533 34678899999999999999999999999998 8999999


Q ss_pred             CCeEEEEEc-ceecceEEEEEECCCCCEEEEeccCcc
Q 020454          289 TGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       289 ~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +|+++++++ |-....|.+|+|+|+..+||.+|.-|+
T Consensus       213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence            999999987 322557999999999999999887665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=1.3e-13  Score=114.18  Aligned_cols=148  Identities=20%  Similarity=0.205  Sum_probs=112.9

Q ss_pred             cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---
Q 020454          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---  247 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~---  247 (326)
                      .|.+--+++|-.-|.+++.|.... .+..+.+...    +.....|+++.|.|.+++ .+++.-.+|.+++||..-.   
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r----~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~~~~~~  255 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEER----LINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKEIVCGA  255 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhh-HHHHhhhhcc----cccccceEEEEEEeCCCc-eEEEEEecCceEEeeccccccC
Confidence            345666778888899999987652 2222222111    112357999999998665 7888888999999974210   


Q ss_pred             ------------------------CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce
Q 020454          248 ------------------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (326)
Q Consensus       248 ------------------------~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  303 (326)
                                              +.|+..+...++.|...+|+|||++||+-+.||.++|||+.+.+++..++.- -+.
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGG  334 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGG  334 (636)
T ss_pred             CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccc
Confidence                                    0145555566678999999999999999999999999999999888877764 778


Q ss_pred             EEEEEECCCCCEEEEeccCccC
Q 020454          304 IRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..+++|+||++||++||.|--+
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLV  356 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLV  356 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceE
Confidence            9999999999999999999643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=4.1e-13  Score=108.06  Aligned_cols=197  Identities=13%  Similarity=0.082  Sum_probs=132.3

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      .++..|++|..||.+|||+......+....        .+.+.|.+|++.+        ++..|++.+.| ..++|+.+.
T Consensus       154 ~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~--------dgk~lasig~d-~~~VW~~~~  216 (398)
T KOG0771|consen  154 GDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSP--------DGKFLASIGAD-SARVWSVNT  216 (398)
T ss_pred             CCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCC--------CCcEEEEecCC-ceEEEEecc
Confidence            445589999999999999965444333222        4558899999865        66688888888 999999876


Q ss_pred             cccccccccceEEEEEccCCCceEEEEEcCCC-----CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE-----KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                      ........+       ...+..+..++|..++     .+++.-..-+.|+.||+...+.-..++..+    .+.....|+
T Consensus       217 g~~~a~~t~-------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~----~~~~~~siS  285 (398)
T KOG0771|consen  217 GAALARKTP-------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK----KIKRFKSIS  285 (398)
T ss_pred             CchhhhcCC-------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh----hhhccCcce
Confidence            532110000       1112345566676655     334444555667777764322110001000    011123578


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      +++.++  +|++++.|+.||.|-|++..+.+.....-+.|...|+.+.|+|+.+++++-+.+....+..+.-
T Consensus       286 sl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  286 SLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            888886  7889999999999999999877443344557889999999999999999988888888887754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.52  E-value=5.2e-12  Score=99.39  Aligned_cols=257  Identities=9%  Similarity=0.086  Sum_probs=154.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCC----------CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH----------SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~   84 (326)
                      -+|+||+..|.|-++.-.....+.......+..++          -.+-+..+.|....+...++....|.+|++|.+..
T Consensus        38 e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e  117 (433)
T KOG1354|consen   38 ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE  117 (433)
T ss_pred             ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence            67999999999998876544222222222221111          11233356677777778899999999999998864


Q ss_pred             cceeee-ecc-----------cCCCCC----------------CCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454           85 GDLRVA-ISN-----------AGDSGA----------------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS  136 (326)
Q Consensus        85 ~~~~~~-~~~-----------~~~~~~----------------~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~  136 (326)
                      ...... +..           +..+..                ..|.-.|.++..         ..+...+....|=.|.
T Consensus       118 r~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~---------NsD~Et~lSADdLRIN  188 (433)
T KOG1354|consen  118 RGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV---------NSDKETFLSADDLRIN  188 (433)
T ss_pred             cccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee---------cCccceEeeccceeee
Confidence            443220 000           000000                011111222221         1233344445566677


Q ss_pred             EEEccccccccccccceEEEEEccCCC------ceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee------eeeecCC
Q 020454          137 MRSIEVTKVSAESSCSTVKSWNVCASG------TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK------IWTAKPP  203 (326)
Q Consensus       137 i~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~------~~~~~~~  203 (326)
                      +|.++..       ++...+.++++..      -|++..|||.. ++++-.+..|+|++-|++....      ++.....
T Consensus       189 LWnlei~-------d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  189 LWNLEII-------DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             ecccccc-------CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence            7776542       2344444544322      38899999976 7788888999999999985321      1211111


Q ss_pred             CCCCCCc-CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC---------------ceEEEEec
Q 020454          204 PKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET---------------PIKAVAEE  267 (326)
Q Consensus       204 ~~~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------~i~~v~~s  267 (326)
                      +...-.+ ..-..|+.+.|++  +|+++++-. --+|++||+....+|+.+++.|+.               .-..++|+
T Consensus       262 p~~rsffseiIsSISDvKFs~--sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSH--SGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             CcchhhHHHHhhhhhceEEcc--CCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence            1110000 0123688999997  566777654 478999999766688888887654               22456899


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCC
Q 020454          268 PDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       268 ~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      .++.++++|+..+.+++|+...|
T Consensus       339 g~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CCcceEecccccceEEEecCCCC
Confidence            99999999999999999996543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.6e-12  Score=111.37  Aligned_cols=206  Identities=9%  Similarity=0.004  Sum_probs=126.7

Q ss_pred             CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEccccccccccc
Q 020454           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESS  150 (326)
Q Consensus        74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~  150 (326)
                      +..|.+||..... ...+.        .+...+....+.+        ++..++..+.+   ..|++|++.....     
T Consensus       183 ~~~i~i~d~dg~~-~~~lt--------~~~~~v~~p~wSP--------DG~~la~~s~~~~~~~i~i~dl~tg~~-----  240 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVN--------RSSQPLMSPAWSP--------DGSKLAYVSFENKKSQLVVHDLRSGAR-----  240 (429)
T ss_pred             eEEEEEECCCCCC-ceEec--------cCCCccccceEcC--------CCCEEEEEEecCCCcEEEEEeCCCCce-----
Confidence            4689999985444 23332        2335566667655        55667666543   3688998754221     


Q ss_pred             cceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEE--ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454          151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (326)
Q Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  227 (326)
                       ..+.  .  ..+.....+|+|+++.|+.+. .++.+.||  |+.+++.. .+..+.         ..+....|+|  ++
T Consensus       241 -~~l~--~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~---------~~~~~~~wSp--DG  303 (429)
T PRK01742        241 -KVVA--S--FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTSGA---------GNNTEPSWSP--DG  303 (429)
T ss_pred             -EEEe--c--CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eeccCC---------CCcCCEEECC--CC
Confidence             0111  1  122344689999999887754 67766555  66555432 222221         2355779998  55


Q ss_pred             cEEEE-EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEE
Q 020454          228 RKFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (326)
Q Consensus       228 ~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  306 (326)
                      +.|+. ...++...||++.........+ .+..  ...+|+|+|++|+..+.++ +.+||+.+++.......+   ...+
T Consensus       304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~  376 (429)
T PRK01742        304 QSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDES  376 (429)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCC
Confidence            55554 4467888888865332222222 2322  4578999999998877764 666999988764322222   3457


Q ss_pred             EEECCCCCEEEEeccCccC
Q 020454          307 IARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       307 l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.|+|++++|+.++.|+..
T Consensus       377 ~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        377 PSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             ceECCCCCEEEEEEcCCCc
Confidence            8899999999999888754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.52  E-value=1.1e-12  Score=103.05  Aligned_cols=261  Identities=13%  Similarity=0.110  Sum_probs=162.3

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-----eeeeecccCCCCCC-----CCCCCeeeeecccccccc
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQ-----PEDDGIVGLHLFKRQREE  118 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~  118 (326)
                      .+...+.++-+...  +.+|++|..+|.|.+|.-+...     +...++...+. .+     .-+..|..+.++.+.   
T Consensus        23 teadiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-FDYLkSleieEKinkIrw~~~~---   96 (433)
T KOG1354|consen   23 TEADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-FDYLKSLEIEEKINKIRWLDDG---   96 (433)
T ss_pred             chhcceeeEEeecc--cceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-cchhhhhhhhhhhhhceecCCC---
Confidence            34455556666554  4489999999999999764322     22222221110 00     011334445555533   


Q ss_pred             cCCCCceEEEEecCCcEEEEEcccccccccc---------------------------ccceEEEEEccCCCceEEEEEc
Q 020454          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAES---------------------------SCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus       119 ~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                         ....++..+.|.+|++|.+.........                           ...+.+++.-.|.-.|.+++++
T Consensus        97 ---n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N  173 (433)
T KOG1354|consen   97 ---NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN  173 (433)
T ss_pred             ---CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence               3457888899999999998764431100                           0112233333444468999999


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC-CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      .++..+++ ..|-.|.+|+++-....+.+-..+... ..+  ..-|++..|+|.. .++|+-.+..|+|++-|+|...-+
T Consensus       174 sD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeL--teVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLC  249 (433)
T KOG1354|consen  174 SDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEEL--TEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALC  249 (433)
T ss_pred             CccceEee-ccceeeeeccccccCCceeEEEccccCHHHH--HHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhh
Confidence            99988877 578899999998544333322111110 000  1237788999974 458898999999999999943111


Q ss_pred             ---eeEEe------------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECC-CCeEEEEEccee-----------cce
Q 020454          251 ---VMSFD------------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKC-----------SGS  303 (326)
Q Consensus       251 ---~~~~~------------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~-----------~~~  303 (326)
                         ...+.            .--..|..+.|+++|+||++-+.- +|++||+. ..+++..++-|.           ...
T Consensus       250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~  328 (433)
T KOG1354|consen  250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA  328 (433)
T ss_pred             cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence               01111            112378899999999999986654 89999994 556777766551           112


Q ss_pred             ---EEEEEECCCCCEEEEeccCc
Q 020454          304 ---IRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       304 ---v~~l~~~p~~~~l~s~s~D~  323 (326)
                         -..++|+-++.+++|||...
T Consensus       329 IfdKFec~~sg~~~~v~TGsy~n  351 (433)
T KOG1354|consen  329 IFDKFECSWSGNDSYVMTGSYNN  351 (433)
T ss_pred             hhheeEEEEcCCcceEecccccc
Confidence               23568888888999998753

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.52  E-value=7.6e-14  Score=121.20  Aligned_cols=252  Identities=12%  Similarity=0.093  Sum_probs=172.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .++++|.+|-.+|||..++.     ........+.....-++++    .+.-++++++.|..|++|.+..+..+..+.  
T Consensus       203 ~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs----~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr--  271 (1113)
T KOG0644|consen  203 RYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVS----SNNTMIAAASNDKVIRVWRLPDGAPVSVLR--  271 (1113)
T ss_pred             ceEeecCccceeeeeeccch-----hhhccCCCCccccchhccc----hhhhhhhhcccCceEEEEecCCCchHHHHh--
Confidence            78999999999999998876     2221222222222212221    233368899999999999999998877666  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            +|++.|+++++.+            ..+.+.||++++||.+......     ..+-.+...+..+.++.+-..+
T Consensus       272 ------ghtgavtaiafsP------------~~sss~dgt~~~wd~r~~~~~y-----~prp~~~~~~~~~~s~~~~~~~  328 (1113)
T KOG0644|consen  272 ------GHTGAVTAIAFSP------------RASSSDDGTCRIWDARLEPRIY-----VPRPLKFTEKDLVDSILFENNG  328 (1113)
T ss_pred             ------ccccceeeeccCc------------cccCCCCCceEecccccccccc-----CCCCCCcccccceeeeeccccc
Confidence                  7889999999755            3378899999999977211000     0000111223456677777778


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      .-++||+.|+.-..|.+.........         +   ..++...    +...+.++.-.+..+.+|++.++ +..+..
T Consensus       329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~---------l---if~t~ss----d~~~~~~~ar~~~~~~vwnl~~g-~l~H~l  391 (1113)
T KOG0644|consen  329 DRFLTGSRDGEARNHEFEQLAWRSNL---------L---IFVTRSS----DLSSIVVTARNDHRLCVWNLYTG-QLLHNL  391 (1113)
T ss_pred             cccccccCCcccccchhhHhhhhccc---------e---EEEeccc----cccccceeeeeeeEeeeeecccc-hhhhhh
Confidence            88899999999988886532110000         0   0111111    11125677777889999999988 667888


Q ss_pred             eecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEE
Q 020454          255 DFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s  318 (326)
                      .+|...+..+.++|-...++ +++.||...|||+-.|.+++.+... .+.+..-+|+++|..++.
T Consensus       392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEec
Confidence            89999999999999877666 8999999999999999887766543 456667789988876653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=7.3e-14  Score=113.65  Aligned_cols=253  Identities=12%  Similarity=0.126  Sum_probs=173.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.++.|+..|.|-.+|+.++     ++...+.   -.+.+..+.|.....  ++|++. ..-+.|||- .|..+..+...
T Consensus       142 rhlllgGrKGHlAa~Dw~t~-----~L~~Ei~---v~Etv~Dv~~LHneq--~~AVAQ-K~y~yvYD~-~GtElHClk~~  209 (545)
T KOG1272|consen  142 RHLLLGGRKGHLAAFDWVTK-----KLHFEIN---VMETVRDVTFLHNEQ--FFAVAQ-KKYVYVYDN-NGTELHCLKRH  209 (545)
T ss_pred             cEEEecCCccceeeeecccc-----eeeeeee---hhhhhhhhhhhcchH--HHHhhh-hceEEEecC-CCcEEeehhhc
Confidence            34888999999999999987     5543332   122233344443333  455554 477899997 45544555532


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                               ..+..|.+.+        ..-.|++++..|.+..-|+.....+...        +. ..+.+..|..+|-+
T Consensus       210 ---------~~v~rLeFLP--------yHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~t-~~G~~~vm~qNP~N  263 (545)
T KOG1272|consen  210 ---------IRVARLEFLP--------YHFLLVAASEAGFLKYQDVSTGKLVASI--------RT-GAGRTDVMKQNPYN  263 (545)
T ss_pred             ---------Cchhhhcccc--------hhheeeecccCCceEEEeechhhhhHHH--------Hc-cCCccchhhcCCcc
Confidence                     5677788877        3347888899999998898765533221        11 13567788889988


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      -.+-+|..+|+|.+|.....+++.++..|.         ..|.++++.+  +|++++|.+.|..++|||+|...+ ++++
T Consensus       264 aVih~GhsnGtVSlWSP~skePLvKiLcH~---------g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~  331 (545)
T KOG1272|consen  264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHR---------GPVSSIAVDR--GGRYMATTGLDRKVKIWDLRNFYQ-LHTY  331 (545)
T ss_pred             ceEEEcCCCceEEecCCCCcchHHHHHhcC---------CCcceEEECC--CCcEEeecccccceeEeeeccccc-ccee
Confidence            999999999999999999888887765544         7799999987  678999999999999999998754 5555


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECC-CC--eEEEEEcce-ecceEEEEEECCCCCEEEEec
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TG--KLLGCFIGK-CSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~--~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      .. ..+...+++|..| .|| .+....|.||.=. .+  ..-..+..| +.++|..|.|+|-..+|-.|-
T Consensus       332 ~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH  398 (545)
T KOG1272|consen  332 RT-PHPASNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH  398 (545)
T ss_pred             ec-CCCcccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence            44 4567788887655 344 4455589999522 21  111112222 356899999999766665543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.6e-12  Score=101.68  Aligned_cols=182  Identities=9%  Similarity=0.052  Sum_probs=126.9

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCc----ee
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKC----EK  196 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~----~~  196 (326)
                      +-..++++..|..|++|+-+..         ...+..-..+..|.|++|-|.+ ..|++|+. +.|+||.....    +.
T Consensus       109 H~~~fava~nddvVriy~ksst---------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~  178 (445)
T KOG2139|consen  109 HIIAFAVATNDDVVRIYDKSST---------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN  178 (445)
T ss_pred             hhhhhhhhccCcEEEEeccCCC---------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc
Confidence            3457888999999999985431         2233333446789999999975 67777765 46899987642    22


Q ss_pred             eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE
Q 020454          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (326)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~  275 (326)
                      +.....+..+.+...-..+|++++|.+  ++..+++++ .|..|.|||+.++ ..+.-....-+.++-+.||||+.+|++
T Consensus       179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGHNPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccchhheeCCCCceeeEEEEcC--CCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcCCCCEEEE
Confidence            222333433333333335899999987  566788776 4678999999976 322222344567888999999999999


Q ss_pred             EcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       276 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      ++-|+..++|......-...+... .+.|....|+|+|.+|.
T Consensus       256 At~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLL  296 (445)
T ss_pred             ecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEE
Confidence            999999999966544333334433 67999999999998654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.50  E-value=2.1e-11  Score=93.99  Aligned_cols=226  Identities=14%  Similarity=0.159  Sum_probs=143.5

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      .++.+-.+|.|.+|.....+....+..+.  .+......-.++.+..        .+..+++.-.+|.+.+-+...    
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls--~~ki~~~~~lslD~~~--------~~~~i~vs~s~G~~~~v~~t~----  152 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLS--SKKISVVEALSLDIST--------SGTKIFVSDSRGSISGVYETE----  152 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccc--hhhhhheeeeEEEeec--------cCceEEEEcCCCcEEEEecce----
Confidence            47778888999999875433322222110  0000001111233221        345688888888887444221    


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                        ..-..+..|+. +.-++...+|+... +++.+||.|+.+..||++. ++.++.  +.      ..|...|.++.-+|.
T Consensus       153 --~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~------kvH~~GV~SI~ss~~  221 (339)
T KOG0280|consen  153 --MVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NS------KVHTSGVVSIYSSPP  221 (339)
T ss_pred             --eeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cc------eeeecceEEEecCCC
Confidence              12234445664 34567777777544 8999999999999999993 333443  11      113356888888876


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCC--e---EEEEEcc
Q 020454          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG--K---LLGCFIG  298 (326)
Q Consensus       225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~--~---~~~~~~~  298 (326)
                       .+.++++|+.|-.|++||.|+..+|+..-... +.|..+.++|.-. .++.++.-+-.+|-+...+  +   .+..++.
T Consensus       222 -~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~  299 (339)
T KOG0280|consen  222 -KPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI  299 (339)
T ss_pred             -CCceEEEeccccceeeeehhcccCccccCccc-cceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc
Confidence             55699999999999999999877887665544 7899999999632 3333344445677776643  3   3445566


Q ss_pred             eecceEEEEEECCCCCEEEEec
Q 020454          299 KCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       299 ~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      | .+-+..-+|.....+||||+
T Consensus       300 h-dSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  300 H-DSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             c-cceeeccccccccceeeeee
Confidence            6 77777788866666899986

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.48  E-value=2.2e-11  Score=108.57  Aligned_cols=185  Identities=14%  Similarity=0.055  Sum_probs=138.7

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      .+..++.++.++.+.+|+......+..........+     ....-+-.+++.-++++|+.-+.|.+|+....+....+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l-----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL-----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEE-----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            567899999999999999765443222111111110     022233456667889999999999999987333222344


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD  281 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~  281 (326)
                      +|.         ..+.++.++-  ++.++++.|.|.++|+|++.+.+......-+|...+..++|.|+  .+++++.|-+
T Consensus       173 GHe---------G~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct  239 (967)
T KOG0974|consen  173 GHE---------GSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT  239 (967)
T ss_pred             ccC---------CceEEEEEcc--CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE
Confidence            443         5567777775  77899999999999999999875444344578999999999988  9999999999


Q ss_pred             EEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       282 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .++|+.. ++.+..+.+|....|+.++..++..+++|++.|+..
T Consensus       240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL  282 (967)
T ss_pred             EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence            9999765 566668988877789999999999999999999975

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=7.8e-11  Score=99.20  Aligned_cols=277  Identities=12%  Similarity=0.070  Sum_probs=156.4

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeeeecccC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      +.+.+.+|.|.++|+.+.     +++.+......     ..+..-+.++++++++. .++.+.++|.++.+.+..+..-.
T Consensus        51 ~yv~~rdg~vsviD~~~~-----~~v~~i~~G~~-----~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   51 LYVANRDGTVSVIDLATG-----KVVATIKVGGN-----PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             EEEEETTSEEEEEETTSS-----SEEEEEE-SSE-----EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred             EEEEcCCCeEEEEECCcc-----cEEEEEecCCC-----cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence            555667899999999988     56555543332     22233346677787765 68999999999988887765421


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCc-eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                      .+. ......+.++...+        ... .+++.-+.+.|.+.|+....        .+..-............++|++
T Consensus       121 ~~~-~~~~~Rv~aIv~s~--------~~~~fVv~lkd~~~I~vVdy~d~~--------~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  121 MPV-DGPESRVAAIVASP--------GRPEFVVNLKDTGEIWVVDYSDPK--------NLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             E-T-TTS---EEEEEE-S--------SSSEEEEEETTTTEEEEEETTTSS--------CEEEEEEE--TTEEEEEE-TTS
T ss_pred             ccc-cccCCCceeEEecC--------CCCEEEEEEccCCeEEEEEecccc--------ccceeeecccccccccccCccc
Confidence            110 01223455454322        233 45555556877777755432        2222223335678889999999


Q ss_pred             CEEEE-ecCCCeEEEEECCCceeeeeecCCCCC----CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          175 KFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKN----SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       175 ~~l~s-g~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      ++++. ...++.|-++|..+++.+..+......    ...+.|+.  .+..|.....+...++.-....+.+||.... +
T Consensus       184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~--~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-k  260 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG--FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-K  260 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT--TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-S
T ss_pred             ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC--cceEEeeccccceecccccCCccccchhhcC-e
Confidence            88765 456778999999998776654322111    11111221  1222332222223323333445667888877 6


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEE----cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g----~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .++++.....+ ..+..+|+++++++.    ...+.|.++|.++.+....+.......+..+.|+++|+.+..+..|+.
T Consensus       261 vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~  338 (369)
T PF02239_consen  261 VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN  338 (369)
T ss_dssp             EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred             EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence            78888887666 677889999999987    555899999999998888776321335999999999998877766653

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.44  E-value=2.7e-10  Score=97.47  Aligned_cols=261  Identities=13%  Similarity=0.071  Sum_probs=149.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -++++++.+|.+..+|..++     ++.-++.-+.....  ...    ..+..+++++.+|.|..+|..+|+.+......
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~--~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETG-----KRLWRVDLDERLSG--GVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             CEEEEECCCCeEEEEEccCC-----cEeeeecCCCCccc--ceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence            57888999999999998877     44222221211111  111    12346889999999999999999886655431


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc--------------------------ccc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------------------SAE  148 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--------------------------~~~  148 (326)
                               +.+.+....         .++.++.+..+|.++.+|.+....                          ..+
T Consensus       135 ---------~~~~~~p~v---------~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~  196 (377)
T TIGR03300       135 ---------SEVLSPPLV---------ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG  196 (377)
T ss_pred             ---------ceeecCCEE---------ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE
Confidence                     111111100         234666677777777777543211                          001


Q ss_pred             cccceEEEEEccCCCceEEEEE-----------------cC--CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          149 SSCSTVKSWNVCASGTIAFSKV-----------------DI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~-----------------~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      ..++.+..++...+..+....+                 +|  .+..+++++.++.+..||.++++.++......     
T Consensus       197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-----  271 (377)
T TIGR03300       197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-----  271 (377)
T ss_pred             CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----
Confidence            1122333333322222211110                 11  23456666677788888888777776644210     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                            ......    .+..+++++.+|.+..+|..++ +.+.+... ......+...  .+..|++++.+|.|+++|..
T Consensus       272 ------~~~p~~----~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       272 ------YQGPAV----DDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             ------ccCceE----eCCEEEEECCCCeEEEEECCCC-cEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence                  011111    2337888888999999999877 44444421 2122222222  46789999999999999999


Q ss_pred             CCeEEEEEcceecceEEE-EEECCCCCEEEEeccCccC
Q 020454          289 TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++.+.+++.+ ...+.. ..+ .++ .|+.++.||.+
T Consensus       339 tG~~~~~~~~~-~~~~~~sp~~-~~~-~l~v~~~dG~l  373 (377)
T TIGR03300       339 DGSFVARLKTD-GSGIASPPVV-VGD-GLLVQTRDGDL  373 (377)
T ss_pred             CCCEEEEEEcC-CCccccCCEE-ECC-EEEEEeCCceE
Confidence            99999888865 433332 233 233 57788888853

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.43  E-value=4.1e-11  Score=100.69  Aligned_cols=178  Identities=11%  Similarity=0.099  Sum_probs=133.8

Q ss_pred             CCceEEEEecCCcEEEEEcccccc-------ccccccceEEEEEccCCCc---eEEEE----EcCCCCEEEEecCCCeEE
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKV-------SAESSCSTVKSWNVCASGT---IAFSK----VDISEKFSLFGGKGVEVN  187 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---v~~~~----~~~~~~~l~sg~~d~~i~  187 (326)
                      ...+++....||.+++|+...+..       ...+..++...|.+.....   ..++.    .+.+...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            345788899999999999876543       1122334444555321111   11111    111346778899999999


Q ss_pred             EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454          188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (326)
Q Consensus       188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s  267 (326)
                      +|++..++..+.+....       |+..|.++.++..  -..|.+++.|+.+..|+.... +.+..+......+.+++++
T Consensus        84 ~ys~~~g~it~~~st~~-------h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDK-------HYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             EEEecCCeEEEEEecCC-------CCCcceeeecccc--cCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEc
Confidence            99999999888766422       3456788887653  338999999999999999976 5677888888889999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       268 ~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      |||..+++++.  .|++||+++++.+..|.|| .++|+++.|.-.
T Consensus       154 ~D~~~l~~as~--~ik~~~~~~kevv~~ftgh-~s~v~t~~f~~~  195 (541)
T KOG4547|consen  154 PDGKILLTASR--QIKVLDIETKEVVITFTGH-GSPVRTLSFTTL  195 (541)
T ss_pred             CCCCEEEeccc--eEEEEEccCceEEEEecCC-CcceEEEEEEEe
Confidence            99999998765  7999999999999999998 999999999865

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.3e-10  Score=102.03  Aligned_cols=186  Identities=12%  Similarity=0.071  Sum_probs=129.0

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--cee--e
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEK--I  197 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~~~--~  197 (326)
                      ....+.....+..+++|............+-     ...|...+.+.++||+++++|+|..||.|.+|.--.  ...  .
T Consensus       170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~-----~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~  244 (792)
T KOG1963|consen  170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI-----TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC  244 (792)
T ss_pred             CCceEEEEEEeeeEEEEEecccceeeccchh-----hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence            3456666677778888887764322221111     123444589999999999999999999999997432  110  1


Q ss_pred             eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc
Q 020454          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~  277 (326)
                      ..++-         |...|++++|++  +|.+|++|+..+.+.+|.+.++++  +-+.--.++|..+.++||+.+.+...
T Consensus       245 t~lHW---------H~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  245 TLLHW---------HHDEVNSLSFSS--DGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             eEEEe---------cccccceeEEec--CCceEeecccceEEEEEeecCCCc--ccccccCCeeEEEEEcCCCCeEEEEe
Confidence            11111         335689999998  677999999999999999998742  33334568999999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEEcce----------ecceEEEEEECCCCCEEEEeccCccC
Q 020454          278 GSGDLASVDIRTGKLLGCFIGK----------CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       278 ~dg~v~iwd~~~~~~~~~~~~~----------~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .|+.|.+....+.+....+.+-          ..+-.+.+.++|.-+.++-.+.-|++
T Consensus       312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~v  369 (792)
T KOG1963|consen  312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHV  369 (792)
T ss_pred             cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceE
Confidence            9999999988765443333321          13345667788855566666665554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.41  E-value=1.6e-10  Score=98.84  Aligned_cols=227  Identities=12%  Similarity=0.104  Sum_probs=144.7

Q ss_pred             ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec-----ccCCCC
Q 020454           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS-----NAGDSG   98 (326)
Q Consensus        24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~-----~~~~~~   98 (326)
                      ..+.++|.+.+     .+.+...  .+...+.++.  ++.+++++++|+.|..|.+|+..-...++-.+     ++...+
T Consensus        33 ~rlliyD~ndG-----~llqtLK--gHKDtVycVA--ys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP  103 (1081)
T KOG1538|consen   33 SRLLVYDTSDG-----TLLQPLK--GHKDTVYCVA--YAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNP  103 (1081)
T ss_pred             CEEEEEeCCCc-----ccccccc--cccceEEEEE--EccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCc
Confidence            36789999887     4444444  3444444444  45567799999999999999875322211110     000000


Q ss_pred             ----------------------C--CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454           99 ----------------------A--QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (326)
Q Consensus        99 ----------------------~--~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~  154 (326)
                                            +  +.....+.+.+|.+        ++.+++.|-.+|+|.+.+-..++        .+
T Consensus       104 ~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn--------DGqylalG~~nGTIsiRNk~gEe--------k~  167 (1081)
T KOG1538|consen  104 ITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN--------DGQYLALGMFNGTISIRNKNGEE--------KV  167 (1081)
T ss_pred             hHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC--------CCcEEEEeccCceEEeecCCCCc--------ce
Confidence                                  0  01122344444433        55667777788888777533222        33


Q ss_pred             EEEEcc-CCCceEEEEEcCCC-----CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454          155 KSWNVC-ASGTIAFSKVDISE-----KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (326)
Q Consensus       155 ~~~~~~-~~~~v~~~~~~~~~-----~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  228 (326)
                      ++-+.. ...+|.+++|+|..     ..+++.....++..|.+. ++.+-+-+....+         ..++++.|  +|.
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~Fd---------P~CisYf~--NGE  235 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFD---------PCCISYFT--NGE  235 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCC---------chhheecc--CCc
Confidence            333322 35689999999963     567777777777777764 3333332222211         23667777  566


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      +++.|+.|+.+++|--. + -.+.++-..+.+|+.++..|++++++.|+.||+|..|++..
T Consensus       236 y~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEEccCCCceEEEeec-C-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            99999999999999754 3 23556656778999999999999999999999999998764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.40  E-value=3.8e-12  Score=99.65  Aligned_cols=214  Identities=14%  Similarity=0.078  Sum_probs=140.5

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce-EEEEecCCcEEEEEc
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKGKASMRSI  140 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g~v~i~~~  140 (326)
                      ++.++++|+.+.- .+.|-|.++-++...+..+         ..|..+.+..        +... +-..+.++.|.+|++
T Consensus        17 Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---------dki~yieW~a--------ds~~ilC~~yk~~~vqvwsl   78 (447)
T KOG4497|consen   17 SPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---------DKIVYIEWKA--------DSCHILCVAYKDPKVQVWSL   78 (447)
T ss_pred             CCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---------HHhhheeeec--------cceeeeeeeeccceEEEEEe
Confidence            3556688888776 7778888777765555543         3455555433        3333 445577889999998


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      ...+.       ..++ + ..+..+..+.|+|+| .+|.+..-+-.|.+|.+.+.+....-  +++        ..+..+
T Consensus        79 ~Qpew-------~ckI-d-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK--------~~~kg~  139 (447)
T KOG4497|consen   79 VQPEW-------YCKI-D-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPK--------TNVKGY  139 (447)
T ss_pred             eccee-------EEEe-c-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccc--------cCceeE
Confidence            76552       1111 1 235678999999999 56677778999999999887664431  111        135678


Q ss_pred             EEeecCCCcEEEEEeCCCe---EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          220 AFLSIDDHRKFVAGTNDHQ---VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~---v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      +|+|  ++++.+.+++-.-   +.|...... ..+..+....-..+.+.|+|||+.|++         ||---.-.+..+
T Consensus       140 ~f~~--dg~f~ai~sRrDCkdyv~i~~c~~W-~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY  207 (447)
T KOG4497|consen  140 AFHP--DGQFCAILSRRDCKDYVQISSCKAW-ILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY  207 (447)
T ss_pred             EECC--CCceeeeeecccHHHHHHHHhhHHH-HHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee
Confidence            9988  6767777664321   111111111 234556666667889999999988775         554322233333


Q ss_pred             cceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          297 IGKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       297 ~~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      .  ..-.+..++|+|.+++|+.|+.|++.+
T Consensus       208 e--~~lG~k~v~wsP~~qflavGsyD~~lr  235 (447)
T KOG4497|consen  208 E--RGLGLKFVEWSPCNQFLAVGSYDQMLR  235 (447)
T ss_pred             e--eccceeEEEeccccceEEeeccchhhh
Confidence            3  356799999999999999999998764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.4e-10  Score=100.52  Aligned_cols=205  Identities=12%  Similarity=0.042  Sum_probs=119.5

Q ss_pred             CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEcccccccccccc
Q 020454           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSC  151 (326)
Q Consensus        75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~  151 (326)
                      ..|.++|.. +.....+.        .+...+....+.+        ++..++..+..   ..|++|++....       
T Consensus       176 ~~L~~~D~d-G~~~~~l~--------~~~~~v~~p~wSP--------DG~~la~~s~~~~~~~I~~~dl~~g~-------  231 (427)
T PRK02889        176 YQLQISDAD-GQNAQSAL--------SSPEPIISPAWSP--------DGTKLAYVSFESKKPVVYVHDLATGR-------  231 (427)
T ss_pred             cEEEEECCC-CCCceEec--------cCCCCcccceEcC--------CCCEEEEEEccCCCcEEEEEECCCCC-------
Confidence            356677763 33323322        1224555566544        45566655532   358888875432       


Q ss_pred             ceEEEEEccCCCceEEEEEcCCCCEEE-EecCCCeEEEEEC--CCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454          152 STVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (326)
Q Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  228 (326)
                       ..++-.  ..+.....+|+|+++.|+ +.+.++...||.+  ..+. ...+..+.         .......|+|  +++
T Consensus       232 -~~~l~~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~---------~~~~~~~wSp--DG~  296 (427)
T PRK02889        232 -RRVVAN--FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS---------GIDTEPFFSP--DGR  296 (427)
T ss_pred             -EEEeec--CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC---------CCCcCeEEcC--CCC
Confidence             111211  134556889999998776 5677777666654  3333 22222211         1234568988  566


Q ss_pred             EEEEEe-CCCeEEEEeC--CCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEEECCCCeEEEEEcceecc
Q 020454          229 KFVAGT-NDHQVRLYDT--SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       229 ~l~~~~-~dg~v~iwd~--~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                      .|+..+ .++...+|.+  ..+ . ...+..........+|+|+|++|+..+.++   .|.+||+.+++... +..  ..
T Consensus       297 ~l~f~s~~~g~~~Iy~~~~~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~  371 (427)
T PRK02889        297 SIYFTSDRGGAPQIYRMPASGG-A-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--TT  371 (427)
T ss_pred             EEEEEecCCCCcEEEEEECCCC-c-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--CC
Confidence            666544 3456666654  433 2 333333333445678999999998666544   59999999887543 322  22


Q ss_pred             eEEEEEECCCCCEEEEeccCc
Q 020454          303 SIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ......|+|+++.|+.++.++
T Consensus       372 ~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        372 RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CccCceECCCCCEEEEEEecC
Confidence            346789999999888877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=7e-10  Score=96.10  Aligned_cols=205  Identities=8%  Similarity=0.025  Sum_probs=123.5

Q ss_pred             cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe---cCCcEEEEEccccccccccccc
Q 020454           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCS  152 (326)
Q Consensus        76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~---~~g~v~i~~~~~~~~~~~~~~~  152 (326)
                      .|.++|...... ..+.        .+...+....+.+        ++..++..+   .+..+++|++....        
T Consensus       180 ~l~~~d~dg~~~-~~lt--------~~~~~~~~p~wSP--------DG~~la~~s~~~g~~~i~i~dl~~G~--------  234 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVH--------RSPQPLMSPAWSP--------DGSKLAYVTFESGRSALVIQTLANGA--------  234 (429)
T ss_pred             eEEEEcCCCCCC-EEee--------cCCCceeeeEEcC--------CCCEEEEEEecCCCcEEEEEECCCCC--------
Confidence            688888854433 3332        2224566666654        455665543   23467777765322        


Q ss_pred             eEEEEEccCCCceEEEEEcCCCCEEEEe-cCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          153 TVKSWNVCASGTIAFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                       .+... ..........|+|+|+.|+.. ..++  .|.+||+.+++....... .         ..+....|+|  +++.
T Consensus       235 -~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~---------~~~~~~~wSP--DG~~  300 (429)
T PRK03629        235 -VRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-R---------SNNTEPTWFP--DSQN  300 (429)
T ss_pred             -eEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-C---------CCcCceEECC--CCCE
Confidence             11111 112334568999999877754 4444  588999987765332221 1         2245678998  5666


Q ss_pred             EEEEeC-CCe--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-C--CcEEEEECCCCeEEEEEcceecce
Q 020454          230 FVAGTN-DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGS  303 (326)
Q Consensus       230 l~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-d--g~v~iwd~~~~~~~~~~~~~~~~~  303 (326)
                      |+..+. ++.  |.++|+..+ . ...+...........|+|||++|+..+. +  ..|.+||+.+++.. .+..  ...
T Consensus       301 I~f~s~~~g~~~Iy~~d~~~g-~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~~~  375 (429)
T PRK03629        301 LAYTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--TFL  375 (429)
T ss_pred             EEEEeCCCCCceEEEEECCCC-C-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--CCC
Confidence            766554 344  444566654 2 3444444445667899999999986543 3  35888999887643 3332  223


Q ss_pred             EEEEEECCCCCEEEEeccCcc
Q 020454          304 IRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .....|+||++.|+..+.|+.
T Consensus       376 ~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        376 DETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCC
Confidence            456789999999999988864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=1.4e-11  Score=101.21  Aligned_cols=250  Identities=15%  Similarity=0.144  Sum_probs=170.3

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+..++-.+.|.  ..+..|++|+.|..|.+||...+..+..+..       +|...|.-..+++ +     +.+..+++
T Consensus       140 ~H~GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP-~-----s~d~ti~~  204 (559)
T KOG1334|consen  140 KHKGCVNTVHFN--QRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIP-F-----SGDRTIVT  204 (559)
T ss_pred             CCCCccceeeec--ccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccC-C-----CCCcCcee
Confidence            344455556664  3455899999999999999988887766664       4545554334333 1     26778999


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~  207 (326)
                      ++.||++++-.+....    ...++.++.  .+.++|..++..|.. +-|.+++.|+.+.-+|++...+...+.....+.
T Consensus       205 ~s~dgqvr~s~i~~t~----~~e~t~rl~--~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~  278 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETG----YVENTKRLA--PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE  278 (559)
T ss_pred             ccccCceeeeeecccc----ceecceecc--cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence            9999999987765432    222233332  357789999999875 778899999999999999876544332111111


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----ceeEEe------ecCCceEEEEecCCCCeEEEE
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFD------FRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~------~~~~~i~~v~~s~~~~~l~~g  276 (326)
                         ......++++..|.+ .+.+++++.|..+++||.+....     ++.++.      ...-.|++++|+.++.-++++
T Consensus       279 ---~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  279 ---KERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             ---ccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence               011346788888864 45899999999999999875322     122332      223479999999888888888


Q ss_pred             cCCCcEEEEECCC--C----------eEEEE-Ecceecc--eEEEEEE-CCCCCEEEEeccCcc
Q 020454          277 NGSGDLASVDIRT--G----------KLLGC-FIGKCSG--SIRSIAR-HPTLPIIASCGFLEA  324 (326)
Q Consensus       277 ~~dg~v~iwd~~~--~----------~~~~~-~~~~~~~--~v~~l~~-~p~~~~l~s~s~D~~  324 (326)
                      -.|-.|++|.-.-  |          ..+.. |+|| ..  .|..+-| -|...|+++||.=|.
T Consensus       355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGH-rN~~TVKgVNFfGPrsEyVvSGSDCGh  417 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGH-RNSRTVKGVNFFGPRSEYVVSGSDCGH  417 (559)
T ss_pred             ecccceEEeccccccCCCCCCCcchhhccchhhccc-ccccccceeeeccCccceEEecCccce
Confidence            8888999995442  2          22333 7887 43  4777755 488899999986443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=8.8e-10  Score=95.49  Aligned_cols=211  Identities=12%  Similarity=0.029  Sum_probs=124.4

Q ss_pred             EeeeCCCCCeEEEEec---CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCC
Q 020454           58 SIDDSQNDPLLAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKG  133 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g  133 (326)
                      +..++++++.|+..+.   +..|.+|++.+++.... ...      .  +......+.+        ++..|+.. ..+|
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~------~--~~~~~~~~SP--------DG~~La~~~~~~g  265 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASF------P--RHNGAPAFSP--------DGSKLAFALSKTG  265 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCC------C--CCcCCeEECC--------CCCEEEEEEcCCC
Confidence            3445566667776542   35789999977764322 211      0  1222344433        44555544 4455


Q ss_pred             --cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC-Ce--EEEEECCCceeeeeecCCCCCCC
Q 020454          134 --KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-VE--VNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       134 --~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                        .|++|+++...        ..++.  .....+....|+|+++.|+..+.+ +.  |.++|+.+++... +....    
T Consensus       266 ~~~I~~~d~~tg~--------~~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~----  330 (429)
T PRK03629        266 SLNLYVMDLASGQ--------IRQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEG----  330 (429)
T ss_pred             CcEEEEEECCCCC--------EEEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCC----
Confidence              46777765322        11121  123356788999999988766543 44  4445666554322 11111    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCC---CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCc---E
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD---L  282 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~---v  282 (326)
                           .......|+|  +++.++..+.+   ..|.+||+.++ . ...+... .......|+|||++|+.++.++.   +
T Consensus       331 -----~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        331 -----SQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             -----CCccCEEECC--CCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence                 1234567887  56677665433   36888998866 2 3344322 23346789999999998887764   6


Q ss_pred             EEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      .++++ +|+....+.+| .+.+...+|+|-
T Consensus       401 ~~~~~-~G~~~~~l~~~-~~~~~~p~Wsp~  428 (429)
T PRK03629        401 NLVST-DGRFKARLPAT-DGQVKFPAWSPY  428 (429)
T ss_pred             EEEEC-CCCCeEECccC-CCCcCCcccCCC
Confidence            77777 46666778777 888999999873

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.37  E-value=4e-09  Score=88.98  Aligned_cols=201  Identities=18%  Similarity=0.167  Sum_probs=128.5

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~  147 (326)
                      +++-..+|.|.+.|..+.+.+..+..       . ......+.+.+        ++.++++++.||.|.++|+...+   
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~-------~-~~~h~~~~~s~--------Dgr~~yv~~rdg~vsviD~~~~~---   69 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPT-------G-GAPHAGLKFSP--------DGRYLYVANRDGTVSVIDLATGK---   69 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE--------S-TTEEEEEE-TT---------SSEEEEEETTSEEEEEETTSSS---
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcC-------C-CCceeEEEecC--------CCCEEEEEcCCCeEEEEECCccc---
Confidence            34566789999999999998888874       1 12222233323        56788888999999999987655   


Q ss_pred             ccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                           .++....  +.....++++++|++++++. ..+.+.++|.++.+++..+.........  ....+.++..+|.. 
T Consensus        70 -----~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~s~~~-  139 (369)
T PF02239_consen   70 -----VVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVASPGR-  139 (369)
T ss_dssp             -----EEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE-SSS-
T ss_pred             -----EEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc--cCCCceeEEecCCC-
Confidence                 4444443  56788999999999998776 5789999999999888776543211100  22356677777642 


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE-EcCCCcEEEEECCCCeEEEEEc
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~-g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      ..++++.-..+.|-+.|....+.................|+|+++++++ ...++.|-++|.++++.+..+.
T Consensus       140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            2244444555888888977653332233333456778899999998875 4667799999999998876653

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=2e-10  Score=96.62  Aligned_cols=199  Identities=12%  Similarity=0.068  Sum_probs=143.3

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecc--ccc----------ccccCCCCceEEEEecC
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLF--KRQ----------REESSSRSRTLLTCTTK  132 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~----------~~~~~~~~~~l~~~~~~  132 (326)
                      ..++|....||.+++|+..++++...+.....     -.+..+++.|-  ...          ....+.+...++-|...
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-----~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-----LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchh-----ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            34799999999999999998888777654321     11222222211  000          01113345678889999


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      |.|.+|++...+.       +-++-.-.+.+.|.++.++.+-..|.+++.|..+..|+...++.+...+..+        
T Consensus        80 g~v~~ys~~~g~i-------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~--------  144 (541)
T KOG4547|consen   80 GSVLLYSVAGGEI-------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK--------  144 (541)
T ss_pred             ccEEEEEecCCeE-------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC--------
Confidence            9999999765442       1122223567889999999888999999999999999999888777766544        


Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-----CCeEEEE-cCCCcEEEEE
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----SFNIYIG-NGSGDLASVD  286 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-----~~~l~~g-~~dg~v~iwd  286 (326)
                       ..+.+++.+|  ++..+++++  ++|++||+.+. +.+..|.+|.++|++++|--+     |.+++++ ..+.-+.+|-
T Consensus       145 -~~~~sl~is~--D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  145 -PLVSSLCISP--DGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             -CccceEEEcC--CCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence             3466788887  577888886  79999999987 678999999999999999876     7777754 4455677786


Q ss_pred             CCC
Q 020454          287 IRT  289 (326)
Q Consensus       287 ~~~  289 (326)
                      +..
T Consensus       219 v~~  221 (541)
T KOG4547|consen  219 VEK  221 (541)
T ss_pred             EEc
Confidence            553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.5e-10  Score=98.31  Aligned_cols=204  Identities=12%  Similarity=0.050  Sum_probs=123.1

Q ss_pred             CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEcccccccccccc
Q 020454           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSC  151 (326)
Q Consensus        75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~  151 (326)
                      ..|.+||...... ..+.        .+...+....+.+        ++..|+..+..   ..|++|++....       
T Consensus       184 ~~l~i~D~~g~~~-~~lt--------~~~~~v~~p~wSp--------Dg~~la~~s~~~~~~~l~~~dl~~g~-------  239 (433)
T PRK04922        184 YALQVADSDGYNP-QTIL--------RSAEPILSPAWSP--------DGKKLAYVSFERGRSAIYVQDLATGQ-------  239 (433)
T ss_pred             EEEEEECCCCCCc-eEee--------cCCCccccccCCC--------CCCEEEEEecCCCCcEEEEEECCCCC-------
Confidence            3688899854333 3332        2224566566544        55567666533   358888875432       


Q ss_pred             ceEEEEEccCCCceEEEEEcCCCCEEE-EecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454          152 STVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (326)
Q Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  228 (326)
                       ...+-.  ........+|+|+++.|+ +.+.++  .|.+||+.+++... +..+.         ......+|+|  +++
T Consensus       240 -~~~l~~--~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~---------~~~~~~~~sp--DG~  304 (433)
T PRK04922        240 -RELVAS--FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF---------GIDTEPTWAP--DGK  304 (433)
T ss_pred             -EEEecc--CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC---------CCccceEECC--CCC
Confidence             111111  123445789999998665 444554  59999998776432 22211         1234568988  565


Q ss_pred             EEEEEe-CCCe--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEEECCCCeEEEEEcceecc
Q 020454          229 KFVAGT-NDHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       229 ~l~~~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                      .|+..+ .+|.  |+++|+..+ + ...+..+.......+|+|+|++|+..+.++   .|.+||+.+++.. .+. + ..
T Consensus       305 ~l~f~sd~~g~~~iy~~dl~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~-~~  379 (433)
T PRK04922        305 SIYFTSDRGGRPQIYRVAASGG-S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-P-GS  379 (433)
T ss_pred             EEEEEECCCCCceEEEEECCCC-C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-C-CC
Confidence            666655 3444  666677654 2 333433434455789999999998654433   5999999887755 333 2 22


Q ss_pred             eEEEEEECCCCCEEEEeccC
Q 020454          303 SIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s~D  322 (326)
                      ......|+|++++|+..+.+
T Consensus       380 ~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        380 LDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CCCCceECCCCCEEEEEEec
Confidence            45677999999988776654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.4e-09  Score=94.65  Aligned_cols=203  Identities=8%  Similarity=0.029  Sum_probs=124.5

Q ss_pred             cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---CCcEEEEEccccccccccccc
Q 020454           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSCS  152 (326)
Q Consensus        76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~~~~~~~~~~  152 (326)
                      .|.++|...... ..+.        .+...+....+.+        ++..|+..+.   +..|++|++....        
T Consensus       183 ~l~~~d~dg~~~-~~lt--------~~~~~v~~p~wSp--------DG~~lay~s~~~g~~~i~~~dl~~g~--------  237 (435)
T PRK05137        183 RLAIMDQDGANV-RYLT--------DGSSLVLTPRFSP--------NRQEITYMSYANGRPRVYLLDLETGQ--------  237 (435)
T ss_pred             EEEEECCCCCCc-EEEe--------cCCCCeEeeEECC--------CCCEEEEEEecCCCCEEEEEECCCCc--------
Confidence            788888744333 3333        2335676666654        5556666543   4578888875432        


Q ss_pred             eEEEEEccCCCceEEEEEcCCCCEEE-EecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          153 TVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                       .+... ...+.+...+|+|+|+.|+ +.+.++.  |.+||+.+++... +..+.         .......|+|  +++.
T Consensus       238 -~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~---------~~~~~~~~sp--DG~~  303 (435)
T PRK05137        238 -RELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP---------AIDTSPSYSP--DGSQ  303 (435)
T ss_pred             -EEEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC---------CccCceeEcC--CCCE
Confidence             11111 1234567889999998765 5555554  7777887765432 22211         2244568888  5666


Q ss_pred             EEEEe-CCC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcEEEEECCCCeEEEEEcceecce
Q 020454          230 FVAGT-NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGS  303 (326)
Q Consensus       230 l~~~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~  303 (326)
                      ++..+ .+|  .|+++|+..+ . ...+..+...+....|+|+|++|+..+.+   ..|.+||+.++.. ..+..  ...
T Consensus       304 i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~  378 (435)
T PRK05137        304 IVFESDRSGSPQLYVMNADGS-N-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFL  378 (435)
T ss_pred             EEEEECCCCCCeEEEEECCCC-C-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCC
Confidence            66655 333  6888887754 2 44554445566778999999999865543   3588889865543 33332  335


Q ss_pred             EEEEEECCCCCEEEEeccC
Q 020454          304 IRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D  322 (326)
                      +....|+|+++.|+..+.+
T Consensus       379 ~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        379 VEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CCCCeECCCCCEEEEEEcc
Confidence            7788999999988765543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.35  E-value=7.9e-10  Score=84.52  Aligned_cols=242  Identities=9%  Similarity=-0.020  Sum_probs=155.0

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      ....|+.|+.-|..++|...+. .+..+++..-   .....+. -..++...  -+..++.|.++++++++.+......+
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn-~~h~~~cd~s---nn~v~~~-~r~cd~~~--~~~i~sndht~k~~~~~~~s~~~~~h  155 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTN-DGHLYQCDVS---NNDVTLV-KRYCDLKF--PLNIASNDHTGKTMVVSGDSNKFAVH  155 (344)
T ss_pred             cccEEEeccccceeeeecccCc-ccceeeeccc---ccchhhh-hhhccccc--ceeeccCCcceeEEEEecCcccceee
Confidence            3466888999999999998866 3333333211   1111111 11111111  27889999999999986555444433


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                      .       .. -.+.+++..+        +...+++.+....|..|.++.....      .++++.......-.+.+|+.
T Consensus       156 ~-------~~-~~~ns~~~sn--------d~~~~~~Vgds~~Vf~y~id~~sey------~~~~~~a~t~D~gF~~S~s~  213 (344)
T KOG4532|consen  156 N-------QN-LTQNSLHYSN--------DPSWGSSVGDSRRVFRYAIDDESEY------IENIYEAPTSDHGFYNSFSE  213 (344)
T ss_pred             c-------cc-cceeeeEEcC--------CCceEEEecCCCcceEEEeCCccce------eeeeEecccCCCceeeeecc
Confidence            2       10 1245566544        5567888899999999998765421      34455556667788999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      ....+|++..||++.|||++..............    .+.+.+..+.|+|...-.+|+..-.-+.+.+-|+|+.+. .+
T Consensus       214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp----~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-~q  288 (344)
T KOG4532|consen  214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP----HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-HQ  288 (344)
T ss_pred             CcceEEEEecCCcEEEEEecccccchhhhcccCC----CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-ee
Confidence            9999999999999999999986543332221111    134578899999754445777777889999999998744 22


Q ss_pred             EEee-------cC-CceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          253 SFDF-------RE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       253 ~~~~-------~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+..       |. ..|..-.|+.++..+.+.+++ .+.=|++.+
T Consensus       289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             EEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            2221       22 237777787777777766655 455555543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=9.5e-11  Score=90.50  Aligned_cols=223  Identities=13%  Similarity=0.118  Sum_probs=139.7

Q ss_pred             cCCcEEEEeccccceee--eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454           73 KNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (326)
Q Consensus        73 ~dg~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~  150 (326)
                      ..|.+.+|++...+...  +++.       .....+..+-+-. .+   ...+-.++-+...|.|.++........    
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~-------~dts~~~dm~w~~-~~---~~g~~~l~~a~a~G~i~~~r~~~~~ss----  108 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQC-------TDTSTEFDMLWRI-RE---TDGDFNLLDAHARGQIQLYRNDEDESS----  108 (339)
T ss_pred             eccceEEEeecccccCccceeee-------ecccccceeeeee-cc---CCccceeeeccccceEEEEeeccceee----
Confidence            45788999987666544  1111       1112222222211 10   001125677788899988876543310    


Q ss_pred             cceEEEEEccC--CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          151 CSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       151 ~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                       ..++-.....  .....++.|++.+..++++-.+|.+.+-+.......  ...+.|..+.+         ...|+.. +
T Consensus       109 -~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~W---------ta~f~~~-~  177 (339)
T KOG0280|consen  109 -VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAW---------TAKFSDK-E  177 (339)
T ss_pred             -eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeee---------eeecccC-C
Confidence             0111111000  113568889999988999999999986655444332  24555554433         3355543 4


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCceeE-EeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCC-CeEEEEEcceecce
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS  303 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~  303 (326)
                      .+++.+|+.|+.+..||+|..+..+.. .+.|...|.++.-+| .+.+|++|+.|-.|++||.++ ++++..-+  ..+.
T Consensus       178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GG  255 (339)
T KOG0280|consen  178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGG  255 (339)
T ss_pred             CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccc
Confidence            469999999999999999944344433 556888899988776 478999999999999999994 67775443  4789


Q ss_pred             EEEEEECCCC--CEEEEeccCc
Q 020454          304 IRSIARHPTL--PIIASCGFLE  323 (326)
Q Consensus       304 v~~l~~~p~~--~~l~s~s~D~  323 (326)
                      |+.+.++|.-  .+|++|-..|
T Consensus       256 VWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  256 VWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             eEEEEecchhhhHHHHHHHhcC
Confidence            9999999853  3455554443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.34  E-value=3.5e-12  Score=111.11  Aligned_cols=219  Identities=15%  Similarity=0.210  Sum_probs=152.1

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      +..+.++++|+.|..|+||..+++..+....        +|.+.|+.++...        ..-.+++++.|..|++|.+.
T Consensus       199 Drtg~~Iitgsdd~lvKiwS~et~~~lAs~r--------Ghs~ditdlavs~--------~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  199 DRTGRYIITGSDDRLVKIWSMETARCLASCR--------GHSGDITDLAVSS--------NNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             ccccceEeecCccceeeeeeccchhhhccCC--------CCccccchhccch--------hhhhhhhcccCceEEEEecC
Confidence            4556799999999999999998888776655        7788999888644        34568888999999999987


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                      ....        +.+.. .+.+.|++++|+|-.    +.+.||++++||.+-.-.++.-.....+     ...-+.++.|
T Consensus       263 ~~~p--------vsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-----~~~~~~s~~~  324 (1113)
T KOG0644|consen  263 DGAP--------VSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-----EKDLVDSILF  324 (1113)
T ss_pred             CCch--------HHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-----cccceeeeec
Confidence            6542        22222 346789999999954    7789999999998822222221111111     1123445555


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~  300 (326)
                      ..  .+..+++++.|+.-..|.+....       .+...+.-+..+.+ ..+.+++-.+-.+.+|++.+|.+++.+.+| 
T Consensus       325 ~~--~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh-  394 (1113)
T KOG0644|consen  325 EN--NGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH-  394 (1113)
T ss_pred             cc--cccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc-
Confidence            43  44578999999988888765221       11111111122222 245667777888999999999999999998 


Q ss_pred             cceEEEEEECCCC-CEEEEeccCcc
Q 020454          301 SGSIRSIARHPTL-PIIASCGFLEA  324 (326)
Q Consensus       301 ~~~v~~l~~~p~~-~~l~s~s~D~~  324 (326)
                      ...+.-|.+||-+ .+..++|.||.
T Consensus       395 sd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  395 SDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             ccceeeeeecCCCcHhhhhccCCCc
Confidence            9999999999955 45668888885

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=7.1e-11  Score=105.36  Aligned_cols=191  Identities=12%  Similarity=0.128  Sum_probs=141.2

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      +++.++.++.++.+.+||...+.....+..       .+..........-.     +...-++++++.-+.|.+|+....
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------~er~~l~~~~~~g~-----s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------DERCTLYSSLIIGD-----SAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCC-------CceEEEEeEEEEec-----cCcEEEEEeccccccEEEEecccc
Confidence            445799999999999999977666555443       11111111111111     114567899999999999997733


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      +.       .+  .-..|.+.|..+.++.+|+++++.+.|.++++|++.+.+...        ...+.|+..|-.+.|+|
T Consensus       166 n~-------p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------~~~fgHsaRvw~~~~~~  228 (967)
T KOG0974|consen  166 NK-------PI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------CTGFGHSARVWACCFLP  228 (967)
T ss_pred             CC-------cc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------cccccccceeEEEEecc
Confidence            21       22  334578899999999999999999999999999999877655        22345667788999987


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      +    .+++++.|-+.++|+.... + +..+..| ...|..++..++...++++..||.+++||+..
T Consensus       229 n----~i~t~gedctcrvW~~~~~-~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  229 N----RIITVGEDCTCRVWGVNGT-Q-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             c----eeEEeccceEEEEEecccc-e-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            4    8999999999999976632 2 4455554 34689999998888999999999999999865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=7.2e-12  Score=117.26  Aligned_cols=219  Identities=15%  Similarity=0.164  Sum_probs=151.3

Q ss_pred             EEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEE
Q 020454           57 ASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS  136 (326)
Q Consensus        57 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~  136 (326)
                      .++...+..++-++|+.||.|++|....+..+..++.       .+...+..+.+..        .++.+-.+..||.+.
T Consensus      2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-------~g~s~vtr~~f~~--------qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-------AGNSRVTRSRFNH--------QGNKFGIVDGDGDLS 2276 (2439)
T ss_pred             eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-------cCcchhhhhhhcc--------cCCceeeeccCCcee
Confidence            3455667778899999999999999988888777776       3335666565443        567899999999999


Q ss_pred             EEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec---CCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454          137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (326)
Q Consensus       137 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  213 (326)
                      +|.....         ...-|+. +......++|-.  ..+++++   .++.+.+||..-.-...-+.        ..|+
T Consensus      2277 l~q~~pk---------~~~s~qc-hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--------~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASPK---------PYTSWQC-HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--------TCHD 2336 (2439)
T ss_pred             ecccCCc---------ceecccc-CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--------eecC
Confidence            9987632         3334443 344555555543  5566654   46789999965322111111        1244


Q ss_pred             CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~  293 (326)
                      ..++.+++.|.  .++|++|+.+|.|++||++.. +.++.++.         ++ ...++++|+..|.++||++..-..+
T Consensus      2337 ~gaT~l~~~P~--~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2337 GGATVLAYAPK--HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             CCceEEEEcCc--ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence            67899999994  569999999999999999954 55555543         44 5678999999999999999987777


Q ss_pred             EEEccee--cce--E--EEEEECCCCCEEEEeccCcc
Q 020454          294 GCFIGKC--SGS--I--RSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       294 ~~~~~~~--~~~--v--~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +.++..|  .+-  +  ..+-..+ ...|++||.||+
T Consensus      2404 ~~~p~e~ak~gfFr~~g~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2404 HTFPSEHAKQGFFRNIGMQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred             hcCchhhcccchhhhcCceeeecc-CceEEEecCCCC
Confidence            7766311  111  1  2233333 457899999984

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=3.9e-08  Score=82.93  Aligned_cols=274  Identities=15%  Similarity=0.126  Sum_probs=155.8

Q ss_pred             eeeecCc----ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec----CCcEEEEecccc--c
Q 020454           17 ALTFDSL----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLNG--D   86 (326)
Q Consensus        17 l~~~~~~----G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----dg~i~i~~~~~~--~   86 (326)
                      ++.|+..    +-|.+|++... .+.............+ .  .+.+  ++++++|++...    +|.|..|++...  +
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~-~g~l~~~~~~~~~~~P-s--~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~   75 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEE-TGTLTLVQTVAEGENP-S--WLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT   75 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETT-TTEEEEEEEEEESSSE-C--CEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCC-CCCceEeeeecCCCCC-c--eEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcce
Confidence            3455555    78999999554 3444343332221111 1  1222  345567777766    579999988754  3


Q ss_pred             eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEc------
Q 020454           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNV------  159 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~------  159 (326)
                      + ..+....     ........++..+        ++..++++ ..+|.+.+++++......    .....+..      
T Consensus        76 L-~~~~~~~-----~~g~~p~~i~~~~--------~g~~l~vany~~g~v~v~~l~~~g~l~----~~~~~~~~~g~g~~  137 (345)
T PF10282_consen   76 L-TLLNSVP-----SGGSSPCHIAVDP--------DGRFLYVANYGGGSVSVFPLDDDGSLG----EVVQTVRHEGSGPN  137 (345)
T ss_dssp             E-EEEEEEE-----ESSSCEEEEEECT--------TSSEEEEEETTTTEEEEEEECTTSEEE----EEEEEEESEEEESS
T ss_pred             e-EEeeeec-----cCCCCcEEEEEec--------CCCEEEEEEccCCeEEEEEccCCcccc----eeeeecccCCCCCc
Confidence            3 3332210     1123344466544        45566555 469999999987643211    11122221      


Q ss_pred             ---cCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEE
Q 020454          160 ---CASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAG  233 (326)
Q Consensus       160 ---~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~  233 (326)
                         .......++.++|+++++++.. ....|.+|++..... +.....     ..+........+.|+|  +++++ ++.
T Consensus       138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-----~~~~~G~GPRh~~f~p--dg~~~Yv~~  210 (345)
T PF10282_consen  138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-----IKVPPGSGPRHLAFSP--DGKYAYVVN  210 (345)
T ss_dssp             TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-----EECSTTSSEEEEEE-T--TSSEEEEEE
T ss_pred             ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-----cccccCCCCcEEEEcC--CcCEEEEec
Confidence               1234588999999999887753 335799999976542 111000     0111223467889998  44444 556


Q ss_pred             eCCCeEEEEeCCCCCCce---eEEee------cCCceEEEEecCCCCeEEEEc-CCCcEEEEECC--CCe--EEEEEcce
Q 020454          234 TNDHQVRLYDTSAQRRPV---MSFDF------RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR--TGK--LLGCFIGK  299 (326)
Q Consensus       234 ~~dg~v~iwd~~~~~~~~---~~~~~------~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~--~~~--~~~~~~~~  299 (326)
                      ..+++|.+|++......+   ..+..      .......++++|||++|+++. ..+.|.+|++.  +++  .+..+...
T Consensus       211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~  290 (345)
T PF10282_consen  211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG  290 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred             CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence            678899999988321212   22221      112578899999999998766 45789999993  343  33444432


Q ss_pred             ecceEEEEEECCCCCEEEEeccC
Q 020454          300 CSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       300 ~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                       ...-+.++++|++++|+++..+
T Consensus       291 -G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  291 -GKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             -SSSEEEEEE-TTSSEEEEEETT
T ss_pred             -CCCccEEEEeCCCCEEEEEecC
Confidence             3347899999999999988644

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.33  E-value=5.2e-09  Score=82.41  Aligned_cols=277  Identities=11%  Similarity=0.083  Sum_probs=160.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..+...-.++.|.||++...     ......  .+.+..+.+.+|.++.. .+|.+..-+-.|.+|.+.+.+.... .. 
T Consensus        62 ~ilC~~yk~~~vqvwsl~Qp-----ew~ckI--deg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~-  131 (447)
T KOG4497|consen   62 HILCVAYKDPKVQVWSLVQP-----EWYCKI--DEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PH-  131 (447)
T ss_pred             eeeeeeeccceEEEEEeecc-----eeEEEe--ccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cc-
Confidence            33445566789999998865     222122  23445566666654432 3677788899999999976654221 11 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE---EE-----------EEccccccccc----cccceEEE
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA---SM-----------RSIEVTKVSAE----SSCSTVKS  156 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v---~i-----------~~~~~~~~~~~----~~~~~~~~  156 (326)
                            . ...+.+.++.+        ++.+.+.++.-.-.   .+           ++++..+ .++    ..+..+.+
T Consensus       132 ------p-K~~~kg~~f~~--------dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D-ltgieWsPdg~~laV  195 (447)
T KOG4497|consen  132 ------P-KTNVKGYAFHP--------DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID-LTGIEWSPDGNWLAV  195 (447)
T ss_pred             ------c-ccCceeEEECC--------CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc-ccCceECCCCcEEEE
Confidence                  0 12234455432        22333333221100   00           0111100 001    11223344


Q ss_pred             EEcc---------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee----------------------------
Q 020454          157 WNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT----------------------------  199 (326)
Q Consensus       157 ~~~~---------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~----------------------------  199 (326)
                      |+..         -+-.+..++|+|.+++|++|+.|+.+++.+--+-++...                            
T Consensus       196 wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~  275 (447)
T KOG4497|consen  196 WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH  275 (447)
T ss_pred             ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence            4321         134688999999999999999999998865432110000                            


Q ss_pred             -ec-------CC--------------C------CCCCCcCCC-CceeeeEEeecCCCcEEEEEeC--CCeEEEEeCCCCC
Q 020454          200 -AK-------PP--------------P------KNSLGIFTP-TWFTSAAFLSIDDHRKFVAGTN--DHQVRLYDTSAQR  248 (326)
Q Consensus       200 -~~-------~~--------------~------~~~~~~~~~-~~v~~~~~~p~~~~~~l~~~~~--dg~v~iwd~~~~~  248 (326)
                       ++       .+              +      +...+...| ..+.-++|++  |..++++-..  -+.+-+||++.. 
T Consensus       276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~--Ds~y~aTrnd~~PnalW~Wdlq~l-  352 (447)
T KOG4497|consen  276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC--DSTYAATRNDKYPNALWLWDLQNL-  352 (447)
T ss_pred             ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC--CceEEeeecCCCCceEEEEechhh-
Confidence             00       00              0      000011111 2456678887  4546555432  347889999965 


Q ss_pred             CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      + ++.+-....+|....|+|....|+.......+++|.......+. .++. .-.|..+.|+.+|..++-+|.|-
T Consensus       353 ~-l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~-GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  353 K-LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKK-GFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             h-hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCC-CceeeeEEecCCCcEEEEEcCCc
Confidence            3 55555677899999999998888877777789999987654443 3333 45899999999999999999885

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=1.1e-10  Score=98.03  Aligned_cols=187  Identities=13%  Similarity=0.136  Sum_probs=137.6

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~  147 (326)
                      |++++....|.-++++.|.++..+..-        .+.+..+...+        ..+.|++|+.+|.|.+||......  
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~~--------~~~lN~v~in~--------~hgLla~Gt~~g~VEfwDpR~ksr--  209 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFETD--------SGELNVVSINE--------EHGLLACGTEDGVVEFWDPRDKSR--  209 (703)
T ss_pred             EEEeecCcceEEEEccccccccccccc--------cccceeeeecC--------ccceEEecccCceEEEecchhhhh--
Confidence            666666678888899999999888752        24455444433        446788888899999999876542  


Q ss_pred             ccccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          148 ESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       148 ~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                            +...+...          ...|+++.|+.+|-.+++|..+|.+.|||++..+++.... |..       ..+|.
T Consensus       210 ------v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~-------e~pi~  275 (703)
T KOG2321|consen  210 ------VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY-------ELPIK  275 (703)
T ss_pred             ------heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC-------cccee
Confidence                  22222111          1249999999999999999999999999999988877532 221       13577


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+.|.+.+..+.+++. ....++|||-.++ ++...++.. ..+..+|+-|++-+++++..++.+..|-+..
T Consensus       276 ~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  276 KLDWQDTDQQNKVVSM-DKRILKIWDECTG-KPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             eecccccCCCceEEec-chHHhhhcccccC-Cceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            8889887444455554 4678999999988 556666543 5599999999999999999999888887765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.27  E-value=2.5e-09  Score=81.83  Aligned_cols=227  Identities=13%  Similarity=0.041  Sum_probs=143.1

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      ..+|+.|+..|...+|...+.+....+..       .+...|.   ..+...    -..-.+..++.|.++++.+++...
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~---~~~r~c----d~~~~~~i~sndht~k~~~~~~~s  149 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVT---LVKRYC----DLKFPLNIASNDHTGKTMVVSGDS  149 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeec-------ccccchh---hhhhhc----ccccceeeccCCcceeEEEEecCc
Confidence            34799999999999999976654333221       1212222   111110    012347788888888888866432


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      .      +.+ +..  ..-.+.+++++++++++++.+....|..|.+... +.+.........       ..-.+.+|+.
T Consensus       150 ~------~~~-~h~--~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-------D~gF~~S~s~  213 (344)
T KOG4532|consen  150 N------KFA-VHN--QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-------DHGFYNSFSE  213 (344)
T ss_pred             c------cce-eec--cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-------CCceeeeecc
Confidence            1      111 111  0124889999999999999999999999998753 222221111100       1122456665


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeE----EeecCCceEEEEecCCCC--eEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMS----FDFRETPIKAVAEEPDSF--NIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~i~~v~~s~~~~--~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      .  ...+|++++||++.|||+|....|...    ...|.+.++.+.|++.|.  +|+..-.-+.+++.|+++++-.+.+.
T Consensus       214 ~--~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  214 N--DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             C--cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            3  448999999999999999977555433    335889999999998653  55565666799999999986554432


Q ss_pred             -------ceecceEEEEEECCCCCEEEEeccCc
Q 020454          298 -------GKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       298 -------~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                             .|....|..-.|+.++.-+.+.+.+.
T Consensus       292 i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~  324 (344)
T KOG4532|consen  292 IPDDVERKHNTQHIFGTNFNNENESNDVKNELQ  324 (344)
T ss_pred             cCccccccccccccccccccCCCcccccccchh
Confidence                   22123477777777666555555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=5e-09  Score=91.15  Aligned_cols=210  Identities=14%  Similarity=0.102  Sum_probs=121.5

Q ss_pred             EeeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCC
Q 020454           58 SIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKG  133 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g  133 (326)
                      +..++++++.|+..+.+   ..|.+||+.+++... +...        .+......+.+        ++..++ +.+.+|
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~--------~g~~~~~~~Sp--------DG~~l~~~~s~~g  270 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF--------RGINGAPSFSP--------DGRRLALTLSRDG  270 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC--------CCCccCceECC--------CCCEEEEEEeCCC
Confidence            33455666677776633   469999997776532 2211        12222344433        444554 445555


Q ss_pred             --cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCe--EEEEECCCceeeeeecCCCCCCC
Q 020454          134 --KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVE--VNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       134 --~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                        .|++|++....         ++... .........+|+|+++.|+..+ .++.  |.++|+.+++....... .    
T Consensus       271 ~~~Iy~~d~~~g~---------~~~lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g----  335 (433)
T PRK04922        271 NPEIYVMDLGSRQ---------LTRLT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-G----  335 (433)
T ss_pred             CceEEEEECCCCC---------eEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-C----
Confidence              47777765422         11111 1122345678999998887655 3444  66667766543222111 1    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcE
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDL  282 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v  282 (326)
                           ......+|+|  +++.++..+.++   .|.+||+.++ . ...+. +........|+|||++|+..+.+   +.+
T Consensus       336 -----~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g-~-~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L  405 (433)
T PRK04922        336 -----NYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTG-S-VRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVL  405 (433)
T ss_pred             -----CCccCEEECC--CCCEEEEEECCCCceeEEEEECCCC-C-eEECC-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence                 1233568888  566777654433   6999999865 3 23333 22234567899999988865543   358


Q ss_pred             EEEECCCCeEEEEEcceecceEEEEEECC
Q 020454          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      .++++. +.....+..+ .+.+...+|+|
T Consensus       406 ~~~~~~-g~~~~~l~~~-~g~~~~p~wsp  432 (433)
T PRK04922        406 AAVSTD-GRVRQRLVSA-DGEVREPAWSP  432 (433)
T ss_pred             EEEECC-CCceEEcccC-CCCCCCCccCC
Confidence            888885 4455556655 67788888887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=9.2e-09  Score=89.27  Aligned_cols=212  Identities=15%  Similarity=0.133  Sum_probs=124.0

Q ss_pred             eeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCc
Q 020454           59 IDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGK  134 (326)
Q Consensus        59 ~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~  134 (326)
                      ..++++++.|+..+.+   ..|.+||+.+++... +...        .+......+.+        ++..++ +.+.+|.
T Consensus       201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~--------~g~~~~~~~SP--------DG~~la~~~~~~g~  263 (427)
T PRK02889        201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF--------KGSNSAPAWSP--------DGRTLAVALSRDGN  263 (427)
T ss_pred             ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC--------CCCccceEECC--------CCCEEEEEEccCCC
Confidence            3455566677776543   359999998776533 2211        12233345433        445554 5677888


Q ss_pred             EEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEEC--CCceeeeeecCCCCCCCCcC
Q 020454          135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDL--DKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       135 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~  211 (326)
                      ..+|.++....       .++.+. .+........|+|+|+.|+..+ .++...||.+  .+++..... ...       
T Consensus       264 ~~Iy~~d~~~~-------~~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g-------  327 (427)
T PRK02889        264 SQIYTVNADGS-------GLRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTG-------  327 (427)
T ss_pred             ceEEEEECCCC-------CcEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCC-------
Confidence            88887654221       111111 1122345678999998877554 3456666654  443322111 111       


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEE
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASV  285 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iw  285 (326)
                        .......|+|  ++++++..+.++   .|.+||+.++ . ...+... .......|+|||++|+..+.++   .+.+.
T Consensus       328 --~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        328 --SYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATG-Q-VTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAV  400 (427)
T ss_pred             --CCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCC-C-eEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence              1123457888  566777666544   6999999866 3 2333322 3346779999999988665443   36666


Q ss_pred             ECCCCeEEEEEcceecceEEEEEECCC
Q 020454          286 DIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       286 d~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      ++ +++....+..+ .+.+...+|+|-
T Consensus       401 ~~-~g~~~~~l~~~-~g~~~~p~wsp~  425 (427)
T PRK02889        401 SS-DGRIKQRLSVQ-GGDVREPSWGPF  425 (427)
T ss_pred             EC-CCCceEEeecC-CCCCCCCccCCC
Confidence            66 46666666655 778888899874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.24  E-value=1.5e-08  Score=88.18  Aligned_cols=175  Identities=15%  Similarity=0.103  Sum_probs=109.0

Q ss_pred             CCceEEEEecC---CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE-EecCCC--eEEEEECCCce
Q 020454          122 RSRTLLTCTTK---GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCE  195 (326)
Q Consensus       122 ~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~iwd~~~~~  195 (326)
                      ++..++.....   ..|++|++....         ..... .....+..++|+|+++.|+ +.+.++  .|.+||+.+++
T Consensus       200 dg~~la~~~~~~~~~~i~v~d~~~g~---------~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       200 DGQKLAYVSFESGKPEIYVQDLATGQ---------REKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCC---------EEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            45566655433   468888865432         11111 1234566789999998665 444444  58889988765


Q ss_pred             eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe
Q 020454          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN  272 (326)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~  272 (326)
                      .... ..+.         .......|+|  +++.|+..+. ++  .|+++|+... . ...+..+...+....|+|+|++
T Consensus       270 ~~~l-~~~~---------~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       270 LTRL-TNGP---------GIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGG-E-VRRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEEC-CCCC---------CCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccCeEECCCCCE
Confidence            4322 1111         1123457877  5556665543 33  6788888755 2 3445545566778899999999


Q ss_pred             EEEEcCCC---cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          273 IYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       273 l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      |+.++.++   .|.+||+.++... .+..  ........|+|+++.|+..+.++
T Consensus       336 i~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       336 IAFVHREGGGFNIAVMDLDGGGER-VLTD--TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EEEEEccCCceEEEEEeCCCCCeE-EccC--CCCCCCceECCCCCEEEEEEeCC
Confidence            99877765   7899999876543 2332  22345668999999888877665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.22  E-value=1.1e-07  Score=78.82  Aligned_cols=240  Identities=10%  Similarity=0.094  Sum_probs=143.7

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCc---eEEEEEeeeCCCCCeEEEEe-c-CCcEEEEeccccceeeeecccCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSN---CVLAASIDDSQNDPLLAVAR-K-NGLTDILNPLNGDLRVAISNAGD   96 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~-~-dg~i~i~~~~~~~~~~~~~~~~~   96 (326)
                      .++.|.|||+.+.     +......-+..++   ...-..+.-++++++|++.. . +..|.++|+.+++++.++..   
T Consensus        75 ~~d~V~v~D~~t~-----~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v---  146 (352)
T TIGR02658        75 RTDYVEVIDPQTH-----LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV---  146 (352)
T ss_pred             CCCEEEEEECccC-----cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC---
Confidence            7899999999987     5544444333322   11122334456677788776 3 69999999999999888875   


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE-EEEcC-CC
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF-SKVDI-SE  174 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~  174 (326)
                          +....+  .. .         .+....+-+.||......++..+..   ......+++.. ..++.. =.+.+ ++
T Consensus       147 ----p~~~~v--y~-t---------~e~~~~~~~~Dg~~~~v~~d~~g~~---~~~~~~vf~~~-~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       147 ----PDCYHI--FP-T---------ANDTFFMHCRDGSLAKVGYGTKGNP---KIKPTEVFHPE-DEYLINHPAYSNKSG  206 (352)
T ss_pred             ----CCCcEE--EE-e---------cCCccEEEeecCceEEEEecCCCce---EEeeeeeecCC-ccccccCCceEcCCC
Confidence                111111  11 1         2233445556777666555543321   11222233221 001000 03344 77


Q ss_pred             CEEEEecCCCeEEEEECCCceeee-----eecCC-CCCCCCcCCCCceeeeEEeecCCCcEEEEEe----------CCCe
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIW-----TAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----------NDHQ  238 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~-----~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~----------~dg~  238 (326)
                      +++.+... |.|.+.|+.......     ..... ..+.   ..|..+.-++++|  +++++++..          ..+.
T Consensus       207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~---wrP~g~q~ia~~~--dg~~lyV~~~~~~~~thk~~~~~  280 (352)
T TIGR02658       207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG---WRPGGWQQVAYHR--ARDRIYLLADQRAKWTHKTASRF  280 (352)
T ss_pred             cEEEEecC-CeEEEEecCCCcceecceeeeccccccccc---cCCCcceeEEEcC--CCCEEEEEecCCccccccCCCCE
Confidence            88777655 999999975533221     11111 0011   1334444588887  444555532          2258


Q ss_pred             EEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEc-CCCcEEEEECCCCeEEEEEc
Q 020454          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~-~dg~v~iwd~~~~~~~~~~~  297 (326)
                      |.++|..+. +.+..+... ..+..++++||++ +|++.. .++.|.++|..+++.+.++.
T Consensus       281 V~ViD~~t~-kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       281 LFVVDAKTG-KRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEEECCCC-eEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            999999987 556666654 5788999999999 888666 57889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.22  E-value=7.9e-07  Score=73.73  Aligned_cols=270  Identities=16%  Similarity=0.079  Sum_probs=142.2

Q ss_pred             CCeeeeeecCc-----ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec----------CCcE
Q 020454           13 PPLRALTFDSL-----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----------NGLT   77 (326)
Q Consensus        13 ~~~~l~~~~~~-----G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----------dg~i   77 (326)
                      ++.++..-+..     |.|.|.|..+.     ++...+.-...+..+  +    +++++.|+++..          ++.|
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~~P~~~--~----spDg~~lyva~~~~~R~~~G~~~d~V   79 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGFLPNPV--V----ASDGSFFAHASTVYSRIARGKRTDYV   79 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCC-----EEEEEEEccCCCcee--E----CCCCCEEEEEeccccccccCCCCCEE
Confidence            44566666665     89999999887     555555444444432  2    234445555554          7999


Q ss_pred             EEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-c-CCcEEEEEccccccccccccceEE
Q 020454           78 DILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T-KGKASMRSIEVTKVSAESSCSTVK  155 (326)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~-~g~v~i~~~~~~~~~~~~~~~~~~  155 (326)
                      .+||..+.+.+..+..-..+..+....+ ..+.+.+        ++..+++.. . ++.+.+.|+....        .+.
T Consensus        80 ~v~D~~t~~~~~~i~~p~~p~~~~~~~~-~~~~ls~--------dgk~l~V~n~~p~~~V~VvD~~~~k--------vv~  142 (352)
T TIGR02658        80 EVIDPQTHLPIADIELPEGPRFLVGTYP-WMTSLTP--------DNKTLLFYQFSPSPAVGVVDLEGKA--------FVR  142 (352)
T ss_pred             EEEECccCcEEeEEccCCCchhhccCcc-ceEEECC--------CCCEEEEecCCCCCEEEEEECCCCc--------EEE
Confidence            9999999998888775211100001111 1122222        444555544 2 5677777765443        222


Q ss_pred             EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-ceee-eeecC-CCCCCCCcCCCCceeeeEEeecCCCcEEEE
Q 020454          156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKI-WTAKP-PPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (326)
Q Consensus       156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~  232 (326)
                      ...+  +....-+..+++..++  -+.|+......+.. ++.. ....- +..+..-...|      .|.+. ++.++.+
T Consensus       143 ei~v--p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP------~~~~~-dg~~~~v  211 (352)
T TIGR02658       143 MMDV--PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP------AYSNK-SGRLVWP  211 (352)
T ss_pred             EEeC--CCCcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCC------ceEcC-CCcEEEE
Confidence            2222  1111111122111221  12333333322221 1111 11000 00000000111      44543 4556666


Q ss_pred             EeCCCeEEEEeCCCCC----CceeEEee-------cCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCe
Q 020454          233 GTNDHQVRLYDTSAQR----RPVMSFDF-------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGK  291 (326)
Q Consensus       233 ~~~dg~v~iwd~~~~~----~~~~~~~~-------~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~  291 (326)
                      ... |+|.+.|+....    .+...+..       ....+.-++++|+++.+++...          .+.|.++|..+++
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            555 999999965321    22222211       2223444899999999987432          2479999999999


Q ss_pred             EEEEEcceecceEEEEEECCCCC-EEEEec-cCcc
Q 020454          292 LLGCFIGKCSGSIRSIARHPTLP-IIASCG-FLEA  324 (326)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s-~D~~  324 (326)
                      .+..+..  ...+.+|+++||++ +|++.. .++.
T Consensus       291 vi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       291 RLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             EEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCc
Confidence            9998873  45899999999998 777655 4443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=2.7e-10  Score=88.83  Aligned_cols=258  Identities=13%  Similarity=0.147  Sum_probs=156.0

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-----eeeeecccCCCC----CCCCCCCeeeeecccccccccC
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSG----AQPEDDGIVGLHLFKRQREESS  120 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~~~----~~~~~~~i~~l~~~~~~~~~~~  120 (326)
                      +...+.++-++..  +.||++|...|.|.+|..+...     +..+++.+...=    .-.-...|..+.++.+.     
T Consensus        25 ead~ItaVefd~t--g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t-----   97 (460)
T COG5170          25 EADKITAVEFDET--GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT-----   97 (460)
T ss_pred             ccceeeEEEeccc--cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-----
Confidence            3445566666544  4489999999999999875432     122222211000    00001235556666533     


Q ss_pred             CCCceEEEEecCCcEEEEEccccccc--------------cc---------------cccc-----eEEEEEccCCCceE
Q 020454          121 SRSRTLLTCTTKGKASMRSIEVTKVS--------------AE---------------SSCS-----TVKSWNVCASGTIA  166 (326)
Q Consensus       121 ~~~~~l~~~~~~g~v~i~~~~~~~~~--------------~~---------------~~~~-----~~~~~~~~~~~~v~  166 (326)
                       ....++..+.|.+|++|.+-..+..              .+               ..+.     +-+++.-.|.-.|.
T Consensus        98 -~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170          98 -GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             -CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence             3456888899999999998654220              00               0011     11233233444688


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeee---ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      +++++.+...+++ ..|-.|.+|++.-....+.   ++.+.-..+    ..-|++..|+|.. .+.+.-.+..|.|++-|
T Consensus       177 SiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeL----teVItSaeFhp~~-cn~fmYSsSkG~Ikl~D  250 (460)
T COG5170         177 SISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEEL----TEVITSAEFHPEM-CNVFMYSSSKGEIKLND  250 (460)
T ss_pred             eeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHH----HHHHhhcccCHhH-cceEEEecCCCcEEehh
Confidence            9999988887776 5778999999875443333   233221110    1237788999974 44788888899999999


Q ss_pred             CCCCCCc-----eeE----------EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEccee-------
Q 020454          244 TSAQRRP-----VMS----------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKC-------  300 (326)
Q Consensus       244 ~~~~~~~-----~~~----------~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~-------  300 (326)
                      +|...-+     +..          +..-.+.|..+.|+++|++|++-+.- +|++||.+.. .++.+++-|+       
T Consensus       251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~  329 (460)
T COG5170         251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELN  329 (460)
T ss_pred             hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHH
Confidence            9943111     111          11123478899999999999986664 8999999864 4566665441       


Q ss_pred             ----cceE---EEEEECCCCCEEEEeccC
Q 020454          301 ----SGSI---RSIARHPTLPIIASCGFL  322 (326)
Q Consensus       301 ----~~~v---~~l~~~p~~~~l~s~s~D  322 (326)
                          ...|   ..+.|+-+...+.+||..
T Consensus       330 d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         330 DVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             hhhhccceeeeEEEEecCCcccccccccc
Confidence                1122   245677777777777754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=5.1e-07  Score=72.44  Aligned_cols=268  Identities=12%  Similarity=0.088  Sum_probs=157.0

Q ss_pred             cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC---CcEEEEeccc--cceeeeecccCCC
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLN--GDLRVAISNAGDS   97 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~~--~~~~~~~~~~~~~   97 (326)
                      ..-|.+|++.+. .|............. ...+  .  .+++.+.|.++-.+   |.|-.|.+..  |++ ..+..... 
T Consensus        15 s~gI~v~~ld~~-~g~l~~~~~v~~~~n-ptyl--~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~-   86 (346)
T COG2706          15 SQGIYVFNLDTK-TGELSLLQLVAELGN-PTYL--A--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTL-   86 (346)
T ss_pred             CCceEEEEEeCc-ccccchhhhccccCC-CceE--E--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeecccc-
Confidence            467999999866 344333323222222 2222  2  23445567776554   7788887764  454 22222110 


Q ss_pred             CCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEcc--------CCCceEEE
Q 020454           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFS  168 (326)
Q Consensus        98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~  168 (326)
                         .+ .+.+.++..+        ++..++++ ...|.|.++.+......    ...+......        ....+...
T Consensus        87 ---~g-~~p~yvsvd~--------~g~~vf~AnY~~g~v~v~p~~~dG~l----~~~v~~~~h~g~~p~~rQ~~~h~H~a  150 (346)
T COG2706          87 ---PG-SPPCYVSVDE--------DGRFVFVANYHSGSVSVYPLQADGSL----QPVVQVVKHTGSGPHERQESPHVHSA  150 (346)
T ss_pred             ---CC-CCCeEEEECC--------CCCEEEEEEccCceEEEEEcccCCcc----ccceeeeecCCCCCCccccCCcccee
Confidence               11 2224455443        34455554 45688899988654321    1111111110        01237889


Q ss_pred             EEcCCCCEEEEecCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCCC
Q 020454          169 KVDISEKFSLFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSA  246 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~~  246 (326)
                      .+.|++++|++.... ..|.+|++..++........      +........+.|+|+  +++.. ++--+++|.+|....
T Consensus       151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~------v~~G~GPRHi~FHpn--~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE------VKPGAGPRHIVFHPN--GKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             eeCCCCCEEEEeecCCceEEEEEcccCccccccccc------cCCCCCcceEEEcCC--CcEEEEEeccCCEEEEEEEcC
Confidence            999999999886532 47999999866543322211      111234568899994  54544 445689999999876


Q ss_pred             CCCceeEEe---------ecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC--CeE--EEEEcceecceEEEEEECCC
Q 020454          247 QRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT--GKL--LGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       247 ~~~~~~~~~---------~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~--~~~--~~~~~~~~~~~v~~l~~~p~  312 (326)
                      ....+..++         ........|.+++||++|+++.. ...|.+|.+..  +++  +.....+ ...-+.+.++|+
T Consensus       223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~  301 (346)
T COG2706         223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPS  301 (346)
T ss_pred             CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCC
Confidence            423233333         12346788899999999998764 34788887763  332  2223332 334788999999


Q ss_pred             CCEEEEeccCc
Q 020454          313 LPIIASCGFLE  323 (326)
Q Consensus       313 ~~~l~s~s~D~  323 (326)
                      +++|+.++.|+
T Consensus       302 g~~Liaa~q~s  312 (346)
T COG2706         302 GRFLIAANQKS  312 (346)
T ss_pred             CCEEEEEccCC
Confidence            99999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=2.3e-10  Score=107.63  Aligned_cols=168  Identities=14%  Similarity=0.159  Sum_probs=130.1

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      ...+.++++.||.+++|......        ++..|+......+..+.|+.+|+.+..+..||.+.+|.+. .++....+
T Consensus      2219 ~~~~Yltgs~dgsv~~~~w~~~~--------~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQ--------QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred             CCceEEecCCCceEEEEeccCCC--------eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc
Confidence            66799999999999999865443        7888998877889999999999999999999999999987 55666656


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---eCCCeEEEEeCC--CCCCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYDTS--AQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---~~dg~v~iwd~~--~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g  276 (326)
                      .|...         .+.+.|.-    ..+++.   +.++.+.+||..  .+...+.  ..|.+.++++++.|..+.|++|
T Consensus      2290 chnk~---------~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2290 CHNKA---------LSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             cCCcc---------ccceeeee----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEec
Confidence            65533         34556653    256665   357799999954  2223333  6899999999999999999999


Q ss_pred             cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +.+|.|++||++..++.+.++.          ++ ...++++++..|.
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccc
Confidence            9999999999998887776663          33 4456666666554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.15  E-value=2.1e-06  Score=72.50  Aligned_cols=266  Identities=17%  Similarity=0.150  Sum_probs=147.2

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccc-cceeeeeccc-----
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAISNA-----   94 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~-~~~~~~~~~~-----   94 (326)
                      ..|.|..|++... .+..+...+.......-+.+  +  -++.+++|+++. .+|+|.++++.. +.+.......     
T Consensus        60 ~~g~v~~~~i~~~-~g~L~~~~~~~~~g~~p~~i--~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~  134 (345)
T PF10282_consen   60 DSGGVSSYRIDPD-TGTLTLLNSVPSGGSSPCHI--A--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS  134 (345)
T ss_dssp             TTTEEEEEEEETT-TTEEEEEEEEEESSSCEEEE--E--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE
T ss_pred             CCCCEEEEEECCC-cceeEEeeeeccCCCCcEEE--E--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC
Confidence            3678888888764 24443433333222222222  2  234555666664 689999999975 4443332211     


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                      .+............+.+.+        +++.+++. -....|.+|+++.....    -.......+.....-+.+.|+|+
T Consensus       135 g~~~~rq~~~h~H~v~~~p--------dg~~v~v~dlG~D~v~~~~~~~~~~~----l~~~~~~~~~~G~GPRh~~f~pd  202 (345)
T PF10282_consen  135 GPNPDRQEGPHPHQVVFSP--------DGRFVYVPDLGADRVYVYDIDDDTGK----LTPVDSIKVPPGSGPRHLAFSPD  202 (345)
T ss_dssp             ESSTTTTSSTCEEEEEE-T--------TSSEEEEEETTTTEEEEEEE-TTS-T----EEEEEEEECSTTSSEEEEEE-TT
T ss_pred             CCcccccccccceeEEECC--------CCCEEEEEecCCCEEEEEEEeCCCce----EEEeeccccccCCCCcEEEEcCC
Confidence            1111011112233344333        44455544 34567888887654310    11133445666778999999999


Q ss_pred             CCEEEE-ecCCCeEEEEECC--Ccee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCC
Q 020454          174 EKFSLF-GGKGVEVNVWDLD--KCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQ  247 (326)
Q Consensus       174 ~~~l~s-g~~d~~i~iwd~~--~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~  247 (326)
                      ++++++ .-.++.|.+|++.  +++.  +.........   .........+.++|  ++++|.+. ...+.|.+|++...
T Consensus       203 g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~isp--dg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  203 GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG---FTGENAPAEIAISP--DGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT---SCSSSSEEEEEE-T--TSSEEEEEECTTTEEEEEEECTT
T ss_pred             cCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc---ccccCCceeEEEec--CCCEEEEEeccCCEEEEEEEecC
Confidence            987754 4567889999988  3322  2222222111   11113577889988  56565554 46779999998432


Q ss_pred             C-C--ceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEEC--CCCeEEEEEcceecceEEEEEE
Q 020454          248 R-R--PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDI--RTGKLLGCFIGKCSGSIRSIAR  309 (326)
Q Consensus       248 ~-~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~--~~~~~~~~~~~~~~~~v~~l~~  309 (326)
                      . .  .+..+.......+.++++|+|++|+++. .++.|.+|++  ++|++...-.........||.|
T Consensus       278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            1 2  2233434445578999999999999776 5678999976  5676654332111345556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=1.8e-10  Score=96.58  Aligned_cols=176  Identities=12%  Similarity=0.124  Sum_probs=124.7

Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEE
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s  179 (326)
                      +|+..|..+....        +.+.+++++.|.++++|++..+....+.   ...-|. ..+..+|..+.|-.+.+++++
T Consensus       733 GH~~~iRai~Aid--------NENSFiSASkDKTVKLWSik~EgD~~~t---saCQfTY~aHkk~i~~igfL~~lr~i~S  801 (1034)
T KOG4190|consen  733 GHQEKIRAIAAID--------NENSFISASKDKTVKLWSIKPEGDEIGT---SACQFTYQAHKKPIHDIGFLADLRSIAS  801 (1034)
T ss_pred             CcHHHhHHHHhcc--------cccceeeccCCceEEEEEeccccCcccc---ceeeeEhhhccCcccceeeeeccceeee
Confidence            4556666665554        5678999999999999999865432221   112232 246778999999988888765


Q ss_pred             ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCCCCCCceeEEe---
Q 020454          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFD---  255 (326)
Q Consensus       180 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~---  255 (326)
                        .|+.|++||.--++++.+....+.+       ..+..+...|+-+...+. .++...+|+++|.|.. .-+.+++   
T Consensus       802 --cD~giHlWDPFigr~Laq~~dapk~-------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcn  871 (1034)
T KOG4190|consen  802 --CDGGIHLWDPFIGRLLAQMEDAPKE-------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCN  871 (1034)
T ss_pred             --ccCcceeecccccchhHhhhcCccc-------CCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEecc
Confidence              6889999998877776644332222       223444555543333444 4478899999999976 3344444   


Q ss_pred             --ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          256 --FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       256 --~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                        +.+..+++++..+.|+.+++|-.+|.|.+.|.++|+.+..++
T Consensus       872 a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  872 APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence              334568899999999999999999999999999999887665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.11  E-value=2.6e-09  Score=81.33  Aligned_cols=198  Identities=17%  Similarity=0.105  Sum_probs=118.6

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccc---cccCCCCceEEEEecCCcEEEEEcccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQR---EESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~---~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      .|+++..++.+..+..-.+......+.      ....++...+++ +...   .+++-.++.+++++.||.+.+.+.+..
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~~~r------t~~i~~~~~~a~-~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~  121 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISLWER------DDGIDPFKVLAK-NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD  121 (319)
T ss_pred             eeecccchhheeeeccceEEEechhhc------ccCcCceeeeec-cCCCCCcccccccCCceEecCCCceEEEEechHH
Confidence            488888888887776654444333322      122344444441 1110   111224678999999999999986652


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceee
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (326)
                      ..+    +..+..   .+. .-.+...-..++++.+++-.     +..++|+++..+.+..         .......|++
T Consensus       122 ~~~----~~~i~~---~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~---------~~~~~~~v~~  184 (319)
T KOG4714|consen  122 LAL----MSRIPS---IHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP---------SKKALDAVTA  184 (319)
T ss_pred             Hhh----hhhccc---ccc-cccccceeecccEEecCCcceEeeccceeeecccccccccc---------cccccccchh
Confidence            110    000000   000 01111122234555443211     2334444442221111         1111234888


Q ss_pred             eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCC
Q 020454          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~  289 (326)
                      ++-+|.. .+++++|+.||.+-+||.|....|+..+..|+.+|..+-|+|. +..|+++++||.+--||..+
T Consensus       185 l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            8888874 4488999999999999999876678888899999999999995 78999999999999999874

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=7.5e-08  Score=81.10  Aligned_cols=120  Identities=15%  Similarity=0.184  Sum_probs=89.0

Q ss_pred             CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCCceeEEeecCCc
Q 020454          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (326)
Q Consensus       183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~  260 (326)
                      +.++++.++........+.          ..++|.++.|+|+  +..|++  |-+--.+.|||++-  .++..  ..+++
T Consensus       250 Eq~Lyll~t~g~s~~V~L~----------k~GPVhdv~W~~s--~~EF~VvyGfMPAkvtifnlr~--~~v~d--f~egp  313 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPLL----------KEGPVHDVTWSPS--GREFAVVYGFMPAKVTIFNLRG--KPVFD--FPEGP  313 (566)
T ss_pred             cceEEEEEecCceEEEecC----------CCCCceEEEECCC--CCEEEEEEecccceEEEEcCCC--CEeEe--CCCCC
Confidence            4568888877444444322          2367999999984  445554  45566899999994  35544  46778


Q ss_pred             eEEEEecCCCCeEEEEcC---CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          261 IKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       261 i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      -+++-|+|.|++|+.++-   -|.|-|||+.+.+++.++...   .-+-.+|+|||++++|+..
T Consensus       314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEec
Confidence            899999999999985554   488999999998888888753   4556799999999999863

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=3.9e-08  Score=85.72  Aligned_cols=146  Identities=14%  Similarity=0.070  Sum_probs=100.0

Q ss_pred             CCCceEEEEEcCCCCEEEEecC---CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCC
Q 020454          161 ASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTND  236 (326)
Q Consensus       161 ~~~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~d  236 (326)
                      +...+...+|+|+++.|+..+.   +..|.+||+.+++.... ....         ..+....|+|  +++.| ++.+.+
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~---------g~~~~~~~SP--DG~~la~~~~~~  267 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFP---------GMTFAPRFSP--DGRKVVMSLSQG  267 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCC---------CcccCcEECC--CCCEEEEEEecC
Confidence            3567999999999998877653   46799999988765322 2111         2245668988  45555 455655


Q ss_pred             Ce--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCC--cEEEEECCCCeEEEEEcceecceEEEEEECC
Q 020454          237 HQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       237 g~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      +.  |++||+.++ . ...+..+.......+|+|||+.|+..+ .+|  .|+++|+.+++.. .+..+ .+.+....|+|
T Consensus       268 g~~~Iy~~d~~~~-~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~Sp  343 (435)
T PRK05137        268 GNTDIYTMDLRSG-T-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSP  343 (435)
T ss_pred             CCceEEEEECCCC-c-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECC
Confidence            54  777788765 3 455555555667789999999888655 333  5888898766543 33333 45677789999


Q ss_pred             CCCEEEEeccC
Q 020454          312 TLPIIASCGFL  322 (326)
Q Consensus       312 ~~~~l~s~s~D  322 (326)
                      +++.|+..+.+
T Consensus       344 dG~~ia~~~~~  354 (435)
T PRK05137        344 RGDLIAFTKQG  354 (435)
T ss_pred             CCCEEEEEEcC
Confidence            99999877654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.08  E-value=7.8e-07  Score=69.30  Aligned_cols=244  Identities=18%  Similarity=0.154  Sum_probs=135.6

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      .-++++.-+|..|.+-..+..-.-+..-++.-.++...=.-+    .|++++.+||.+...|+|++||+...+ +..+..
T Consensus         8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl----~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p   82 (282)
T PF15492_consen    8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKL----AWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPP   82 (282)
T ss_pred             CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEE----EECCCCcEEEEEcCCCeEEEEecccce-eEEcCc
Confidence            356777777777777776654222222222223333332323    345677799999999999999995433 233322


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                      ..... ..-..+|.++.+.+...  +..-...|++....|.++-|-+...... +......--+.......|.++.++|.
T Consensus        83 ~~~~~-~d~~~Aiagl~Fl~~~~--s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q-~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   83 AMSFP-GDLSDAIAGLIFLEYKK--SAQWSYELLVINYRGQLRSYLVSVGTNQ-GYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             ccccC-CccccceeeeEeecccc--ccccceeEEEEeccceeeeEEEEcccCC-cceeeEEEEecccCCCceeEEEEcCC
Confidence            11000 01235677777655331  1111346888888888877765321100 00111111122233567999999999


Q ss_pred             CCEEEEecCCCe-----------EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe----
Q 020454          174 EKFSLFGGKGVE-----------VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ----  238 (326)
Q Consensus       174 ~~~l~sg~~d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~----  238 (326)
                      .++|++||....           +..|.+-++.+-.                              ..++...|+.    
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy------------------------------k~v~~~~~~~~~~~  208 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY------------------------------KQVTSSEDDITASS  208 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCCCcE------------------------------EEccccCccccccc
Confidence            999888876433           2222222221111                              1111111211    


Q ss_pred             --EEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          239 --VRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       239 --v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                        -.+|.+-+. + +... ......|..|..||||..|++.+.+|.|.+|++.+.++...+.-
T Consensus       209 ~~~~~~~~~~~-~-~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  209 KRRGLLRIPSF-K-FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             cccceeeccce-e-eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence              122322221 1 1111 22456899999999999999999999999999999888777664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.07  E-value=4.7e-08  Score=77.56  Aligned_cols=227  Identities=11%  Similarity=0.148  Sum_probs=144.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccC--CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc----ccee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLR   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~----~~~~   88 (326)
                      --+++.++|-.+|||--...       -+.|..  +..+..+.+.++.  .+...|++|-.+|++.-+.+..    ..+.
T Consensus        37 ~gv~~~s~drtvrv~lkrds-------~q~wpsI~~~mP~~~~~~~y~--~e~~~L~vg~~ngtvtefs~sedfnkm~~~  107 (404)
T KOG1409|consen   37 EGVISVSEDRTVRVWLKRDS-------GQYWPSIYHYMPSPCSAMEYV--SESRRLYVGQDNGTVTEFALSEDFNKMTFL  107 (404)
T ss_pred             CCeEEccccceeeeEEeccc-------cccCchhhhhCCCCceEeeee--ccceEEEEEEecceEEEEEhhhhhhhcchh
Confidence            34778888899999975533       223332  2233344444443  3344799999999999997642    1122


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      +.+        ..|...+..+.+..        ....+++.+.|..+.-.-.+...        .+.-+....  ....+
T Consensus       108 r~~--------~~h~~~v~~~if~~--------~~e~V~s~~~dk~~~~hc~e~~~--------~lg~Y~~~~--~~t~~  161 (404)
T KOG1409|consen  108 KDY--------LAHQARVSAIVFSL--------THEWVLSTGKDKQFAWHCTESGN--------RLGGYNFET--PASAL  161 (404)
T ss_pred             hhh--------hhhhcceeeEEecC--------CceeEEEeccccceEEEeeccCC--------cccceEeec--cCCCC
Confidence            221        15557777666544        44678888888776533322211        111111110  01111


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECC--CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      .+.-  .+...|...+.|.+-.+.  ...++..+.+|.         ..+++.+|.|.  ..+|++|..|..+.+||+-.
T Consensus       162 ~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~---------~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  162 QFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHT---------GEVTCLKWDPG--QRLLFSGASDHSVIMWDIGG  228 (404)
T ss_pred             ceee--EEEEecccccceEEEEEeecCCceEEEEcCcc---------cceEEEEEcCC--CcEEEeccccCceEEEeccC
Confidence            1111  155566666776665443  345566666655         55889999884  34999999999999999886


Q ss_pred             CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       247 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+.......+|...|..++.-+.-+.+++++.||.|.+|+++.
T Consensus       229 ~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  229 RKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             CcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            5455677888999999998888889999999999999999874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.07  E-value=1.3e-07  Score=81.15  Aligned_cols=231  Identities=14%  Similarity=0.127  Sum_probs=130.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+++.++.+|.+..+|..++     ++  .|....... +.+....   .+..++++..+|.|..||.++++.+..+...
T Consensus       106 ~~v~v~~~~g~l~ald~~tG-----~~--~W~~~~~~~-~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  174 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDG-----KE--LWRAKLSSE-VLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRV  174 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCC-----cE--eeeeccCce-eecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence            56888889999999999877     44  333221111 1111111   1235888889999999999999876665532


Q ss_pred             CCCCC-CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc---------------------------
Q 020454           95 GDSGA-QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---------------------------  146 (326)
Q Consensus        95 ~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~---------------------------  146 (326)
                      .+... .....++    .          .++.++.+..+|.+..+|.......                           
T Consensus       175 ~~~~~~~~~~sp~----~----------~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~  240 (377)
T TIGR03300       175 TPALTLRGSASPV----I----------ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD  240 (377)
T ss_pred             CCceeecCCCCCE----E----------ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence            11000 0000011    0          1234555555555555554321100                           


Q ss_pred             -----cccccceEEEEEccCCCceEEEEE------cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454          147 -----AESSCSTVKSWNVCASGTIAFSKV------DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (326)
Q Consensus       147 -----~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  215 (326)
                           ....++.+..++......+.....      ...+..++.++.++.|..+|..+++.++.........        
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~--------  312 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ--------  312 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc--------
Confidence                 001233444444443333332221      1245677788899999999999998887653221111        


Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEE
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASV  285 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iw  285 (326)
                      ..+...    .+..+++++.+|.|+++|..++ +.+.+++.+...+.. .++  -+..|+.++.||.|+.|
T Consensus       313 ~ssp~i----~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~~~~sp~~--~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       313 LTAPAV----VGGYLVVGDFEGYLHWLSREDG-SFVARLKTDGSGIASPPVV--VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             cccCEE----ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccccCCEE--ECCEEEEEeCCceEEEe
Confidence            111112    2338889999999999999987 557777765543322 222  23468899999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.05  E-value=9e-07  Score=70.71  Aligned_cols=229  Identities=16%  Similarity=0.178  Sum_probs=133.0

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP  101 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  101 (326)
                      ++|.|..||..++     +..-+..-............   ..++++++++.++.|..||..+|+.+..+...       
T Consensus         1 ~~g~l~~~d~~tG-----~~~W~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-------   65 (238)
T PF13360_consen    1 DDGTLSALDPRTG-----KELWSYDLGPGIGGPVATAV---PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-------   65 (238)
T ss_dssp             -TSEEEEEETTTT-----EEEEEEECSSSCSSEEETEE---EETTEEEEEETTSEEEEEETTTSEEEEEEECS-------
T ss_pred             CCCEEEEEECCCC-----CEEEEEECCCCCCCccceEE---EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-------
Confidence            4688999998777     44323322111122121111   12346888899999999999999987777641       


Q ss_pred             CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-cCC----CceEEEEEcCCCCE
Q 020454          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CAS----GTIAFSKVDISEKF  176 (326)
Q Consensus       102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~----~~v~~~~~~~~~~~  176 (326)
                        +++.... ..        .++.++.++.++.+..+|.....          .+|.. ...    .....+.....++.
T Consensus        66 --~~~~~~~-~~--------~~~~v~v~~~~~~l~~~d~~tG~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~  124 (238)
T PF13360_consen   66 --GPISGAP-VV--------DGGRVYVGTSDGSLYALDAKTGK----------VLWSIYLTSSPPAGVRSSSSPAVDGDR  124 (238)
T ss_dssp             --SCGGSGE-EE--------ETTEEEEEETTSEEEEEETTTSC----------EEEEEEE-SSCTCSTB--SEEEEETTE
T ss_pred             --cccccee-ee--------cccccccccceeeeEecccCCcc----------eeeeeccccccccccccccCceEecCE
Confidence              1211111 11        45678888888888888855433          24442 111    11122223334777


Q ss_pred             EEEecCCCeEEEEECCCceeeeeecCCCCCCCC-cC-CCCceeeeEEeecCCCcEEEEEeCCCe-EEEEeCCCCCCceeE
Q 020454          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG-IF-TPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPVMS  253 (326)
Q Consensus       177 l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~p~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~  253 (326)
                      ++.+..++.|..+|+++++.++........... +. .......+.+.   ++ .++.++.++. +.+ |+.+++ .+.+
T Consensus       125 ~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~~~g~~~~~-d~~tg~-~~w~  198 (238)
T PF13360_consen  125 LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS---DG-RVYVSSGDGRVVAV-DLATGE-KLWS  198 (238)
T ss_dssp             EEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC---TT-EEEEECCTSSEEEE-ETTTTE-EEEE
T ss_pred             EEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE---CC-EEEEEcCCCeEEEE-ECCCCC-EEEE
Confidence            888888999999999999998887653221100 00 00001111221   34 6777777775 555 999873 3333


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~  295 (326)
                      ..  ...+.. .....+..|++++.++.|..||+++|+.+.+
T Consensus       199 ~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  199 KP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             ec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            22  233333 1346778888888999999999999998753

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.05  E-value=3.3e-07  Score=78.92  Aligned_cols=264  Identities=15%  Similarity=0.085  Sum_probs=141.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCC-ceEEE------EEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLA------ASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~   87 (326)
                      -++.+++.+|.+.-+|..++     ++  .|...-.. .....      ++-.....+..+++++.+|.+..+|.++|+.
T Consensus        70 ~~vy~~~~~g~l~ald~~tG-----~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~  142 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTG-----KE--IWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV  142 (394)
T ss_pred             CEEEEECCCCeEEEEECCCC-----cE--eeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC
Confidence            57888888999999998877     33  23211110 00000      0000001233588888999999999999998


Q ss_pred             eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc----------------c----
Q 020454           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS----------------A----  147 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~----------------~----  147 (326)
                      +........    ....++.              .++.++.+..+|.+..+|.+..+..                +    
T Consensus       143 ~W~~~~~~~----~~ssP~v--------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~  204 (394)
T PRK11138        143 AWQTKVAGE----ALSRPVV--------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA  204 (394)
T ss_pred             cccccCCCc----eecCCEE--------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence            776553110    0011111              2345666666666655554322110                0    


Q ss_pred             ------ccccceEEEEEccCCCceEEE-----------------EEcC--CCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454          148 ------ESSCSTVKSWNVCASGTIAFS-----------------KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (326)
Q Consensus       148 ------~~~~~~~~~~~~~~~~~v~~~-----------------~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~  202 (326)
                            +..++.+..++......+...                 ..+|  .+..++.++.++.+..+|..+++.+++...
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~  284 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY  284 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence                  001122222222211111111                 1112  234555566778888888888877766432


Q ss_pred             CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCc
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGD  281 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~  281 (326)
                      ..           ...+..    .+..++.++.+|.+..+|..++ +.+...... .....+...  .+.+|+.++.+|.
T Consensus       285 ~~-----------~~~~~~----~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~  346 (394)
T PRK11138        285 GS-----------VNDFAV----DGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY  346 (394)
T ss_pred             CC-----------ccCcEE----ECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcccCCEE--ECCEEEEEeCCCE
Confidence            11           001111    2337778888999999999877 334333211 111222222  2568889999999


Q ss_pred             EEEEECCCCeEEEEEcceecceEEE-EEECCCCCEEEEeccCcc
Q 020454          282 LASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEA  324 (326)
Q Consensus       282 v~iwd~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~  324 (326)
                      ++++|..+|+.+.+++-. ...+.+ ..+  .+..|+.++.||.
T Consensus       347 l~~ld~~tG~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t~~G~  387 (394)
T PRK11138        347 LHWINREDGRFVAQQKVD-SSGFLSEPVV--ADDKLLIQARDGT  387 (394)
T ss_pred             EEEEECCCCCEEEEEEcC-CCcceeCCEE--ECCEEEEEeCCce
Confidence            999999999998877632 333332 122  2446777888875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=3.6e-07  Score=79.75  Aligned_cols=203  Identities=11%  Similarity=0.043  Sum_probs=115.3

Q ss_pred             cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEEEccccccccccccc
Q 020454           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSCS  152 (326)
Q Consensus        76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~~~~~~~~~~~~~~~  152 (326)
                      .|.++|...++. ..+.        .+...+....+.+        ++..|+..+.+   ..|.+|++....        
T Consensus       180 ~l~~~d~~g~~~-~~l~--------~~~~~~~~p~wSp--------DG~~la~~s~~~~~~~l~~~~l~~g~--------  234 (430)
T PRK00178        180 TLQRSDYDGARA-VTLL--------QSREPILSPRWSP--------DGKRIAYVSFEQKRPRIFVQNLDTGR--------  234 (430)
T ss_pred             EEEEECCCCCCc-eEEe--------cCCCceeeeeECC--------CCCEEEEEEcCCCCCEEEEEECCCCC--------
Confidence            477778754433 2222        1224555556544        45566555433   357777765322        


Q ss_pred             eEEEEEccCCCceEEEEEcCCCCEEE-EecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          153 TVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                      ..++..  ..+......|+|+|+.|+ +...++  .|.+||+.+++... +..+.         .......|+|  +++.
T Consensus       235 ~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~~sp--Dg~~  300 (430)
T PRK00178        235 REQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP---------AIDTEPFWGK--DGRT  300 (430)
T ss_pred             EEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC---------CCcCCeEECC--CCCE
Confidence            111111  123445688999998776 444444  58888998765432 22211         1234567887  4555


Q ss_pred             EEEEe-CCC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecce
Q 020454          230 FVAGT-NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGS  303 (326)
Q Consensus       230 l~~~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~  303 (326)
                      ++..+ .++  .|+++|+.++ + ...+...........|+|+|++|+..+. ++  .|.+||+.+++... +..  ...
T Consensus       301 i~f~s~~~g~~~iy~~d~~~g-~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~  375 (430)
T PRK00178        301 LYFTSDRGGKPQIYKVNVNGG-R-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSL  375 (430)
T ss_pred             EEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCC
Confidence            55444 333  5777787765 2 3333333233445689999999986554 33  48889998876532 221  222


Q ss_pred             EEEEEECCCCCEEEEeccC
Q 020454          304 IRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D  322 (326)
                      .....|+|+++.|+..+.+
T Consensus       376 ~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        376 DESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCCceECCCCCEEEEEEec
Confidence            3356899999988776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.00  E-value=9.5e-07  Score=73.38  Aligned_cols=220  Identities=14%  Similarity=0.104  Sum_probs=137.5

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeee-cccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLH-LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      -++-+..|.|.+||.++.++ ..+..-.+.........+..-. +.+..   + ..++-+++--+-|+..+.+.....  
T Consensus       280 rIvFq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledf---a-~~~Gd~ia~VSRGkaFi~~~~~~~--  352 (668)
T COG4946         280 RIVFQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDF---A-VVNGDYIALVSRGKAFIMRPWDGY--  352 (668)
T ss_pred             EEEEecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhh---c-cCCCcEEEEEecCcEEEECCCCCe--
Confidence            34556679999999977665 3332210111011111111111 11100   0 122334444456666766533221  


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC-eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  225 (326)
                               ..++.+.+.|.-..+..+++-++.|..|+ .+-|||.++++......+.          ..|.++..+|  
T Consensus       353 ---------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----------g~I~av~vs~--  411 (668)
T COG4946         353 ---------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----------GNIEAVKVSP--  411 (668)
T ss_pred             ---------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----------cceEEEEEcC--
Confidence                     12334556677777777777888999998 8999999988865543332          3477888887  


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC----cEEEEECCCCeEEEEEcceec
Q 020454          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKLLGCFIGKCS  301 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg----~v~iwd~~~~~~~~~~~~~~~  301 (326)
                      +|+.++++.....+-++|+.++ .+...-+...+-|+.+.|||+++++|-+--+|    .|+++|+.+++....-. . .
T Consensus       412 dGK~~vvaNdr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~-t  488 (668)
T COG4946         412 DGKKVVVANDRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P-T  488 (668)
T ss_pred             CCcEEEEEcCceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C-c
Confidence            6778999988889999999987 33333334567899999999999999766665    68999999887654332 1 2


Q ss_pred             ceEEEEEECCCCCEEEE
Q 020454          302 GSIRSIARHPTLPIIAS  318 (326)
Q Consensus       302 ~~v~~l~~~p~~~~l~s  318 (326)
                      +-=.+-+|.|++++|.-
T Consensus       489 a~DfsPaFD~d~ryLYf  505 (668)
T COG4946         489 AYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             ccccCcccCCCCcEEEE
Confidence            22334578888886643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.00  E-value=8.6e-08  Score=76.10  Aligned_cols=224  Identities=11%  Similarity=0.111  Sum_probs=151.5

Q ss_pred             eEEEEecCCcEEEE-eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454           67 LLAVARKNGLTDIL-NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        67 ~l~~g~~dg~i~i~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~  145 (326)
                      -+++.+.|.+++|| +.+.+++-..+...       ...++..+.+..        ....|+.+-.+|.+.-+.+...-.
T Consensus        38 gv~~~s~drtvrv~lkrds~q~wpsI~~~-------mP~~~~~~~y~~--------e~~~L~vg~~ngtvtefs~sedfn  102 (404)
T KOG1409|consen   38 GVISVSEDRTVRVWLKRDSGQYWPSIYHY-------MPSPCSAMEYVS--------ESRRLYVGQDNGTVTEFALSEDFN  102 (404)
T ss_pred             CeEEccccceeeeEEeccccccCchhhhh-------CCCCceEeeeec--------cceEEEEEEecceEEEEEhhhhhh
Confidence            38999999999999 44566665555542       224666666544        455788889999988777553210


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  225 (326)
                          +...++.| ..+...+..+-|+-...++++.+.|..+.--=.+.+..+-.....          .+.++..|.-  
T Consensus       103 ----km~~~r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----------~~~t~~~~d~--  165 (404)
T KOG1409|consen  103 ----KMTFLKDY-LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----------TPASALQFDA--  165 (404)
T ss_pred             ----hcchhhhh-hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----------ccCCCCceee--
Confidence                11133333 356778889989888899999999977744333333322111000          0111112211  


Q ss_pred             CCcEEEEEeCCCeEEEEeCC-CCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe-EEEEEcceecce
Q 020454          226 DHRKFVAGTNDHQVRLYDTS-AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGS  303 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~  303 (326)
                      .  +...|-..|.|.+-.+. +.-.++.++.+|...+++++|.|....+++|..|..+.+||+--.+ ..+...+| ...
T Consensus       166 ~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~k  242 (404)
T KOG1409|consen  166 L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDK  242 (404)
T ss_pred             E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhh
Confidence            1  44556666766665543 2235688899999999999999999999999999999999997543 34566777 889


Q ss_pred             EEEEEECCCCCEEEEeccCccC
Q 020454          304 IRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |..+..-+.-+.+++++.||-+
T Consensus       243 V~~l~~~~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  243 VQALSYAQHTRQLISCGEDGGI  264 (404)
T ss_pred             hhhhhhhhhheeeeeccCCCeE
Confidence            9999888888899999999853

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.99  E-value=4.4e-06  Score=67.09  Aligned_cols=213  Identities=18%  Similarity=0.143  Sum_probs=132.7

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      .+.++++....+.|..|+..+++. ..+..          ....++....        .++.++.+...+. .++|....
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~----------~~~~G~~~~~--------~~g~l~v~~~~~~-~~~d~~~g   70 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEV-EVIDL----------PGPNGMAFDR--------PDGRLYVADSGGI-AVVDPDTG   70 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEE-EEEES----------SSEEEEEEEC--------TTSEEEEEETTCE-EEEETTTT
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeE-EEEec----------CCCceEEEEc--------cCCEEEEEEcCce-EEEecCCC
Confidence            445677777789999999976665 33332          1255566542        3467777776555 44465543


Q ss_pred             ccccccccceEEEEEc---c-CCCceEEEEEcCCCCEEEEecCC--------CeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          144 KVSAESSCSTVKSWNV---C-ASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~sg~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      .        ...+...   . .....+.++++++|++.++....        +.|..++.. ++........        
T Consensus        71 ~--------~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~--------  133 (246)
T PF08450_consen   71 K--------VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL--------  133 (246)
T ss_dssp             E--------EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--------
T ss_pred             c--------EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--------
Confidence            2        1112222   1 23468899999999977765433        457777766 4432222211        


Q ss_pred             CCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCCCCCCce---eEE-eecC--CceEEEEecCCCCeEEEEcCCCcEEE
Q 020454          212 TPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRPV---MSF-DFRE--TPIKAVAEEPDSFNIYIGNGSGDLAS  284 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---~~~-~~~~--~~i~~v~~s~~~~~l~~g~~dg~v~i  284 (326)
                        ...+.++|+|  +++. +++-+..+.|..|++......+   ..+ ....  ...-.+++..+|+..++....+.|.+
T Consensus       134 --~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~  209 (246)
T PF08450_consen  134 --GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV  209 (246)
T ss_dssp             --SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred             --ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence              2356899998  4444 4567888999999986432211   112 1222  24778999999998888788899999


Q ss_pred             EECCCCeEEEEEcceecceEEEEEEC-CCCCEEEEe
Q 020454          285 VDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASC  319 (326)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~  319 (326)
                      +|.+ |+++..+... ...+++++|. |+...|+..
T Consensus       210 ~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  210 FDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred             ECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence            9987 9988888765 5689999994 665555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.98  E-value=3.4e-08  Score=77.41  Aligned_cols=263  Identities=11%  Similarity=0.121  Sum_probs=143.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCc-ceeeeccCC----------CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVP-KVVERWGDP----------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL   83 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~   83 (326)
                      .-+.||+..|.|.+++-+.. .+.. +....|..+          +-.+-+.++-|..+.....++....|.+|++|.+.
T Consensus        39 ~YlatGDkgGRVvlfer~~s-~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy  117 (460)
T COG5170          39 LYLATGDKGGRVVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY  117 (460)
T ss_pred             ceEeecCCCceEEEeecccc-cccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence            56888999999999986654 1111 111112211          11233446777777777789999999999999986


Q ss_pred             ccceeeeecccCCCCC-CCCCCCeeeeeccc---------------------ccc----cccCCCCceEEEEecCCcEEE
Q 020454           84 NGDLRVAISNAGDSGA-QPEDDGIVGLHLFK---------------------RQR----EESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~---------------------~~~----~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      +..+....+....... .+..+++.......                     .+.    ..+-..+...+....+=.|.+
T Consensus       118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL  197 (460)
T COG5170         118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL  197 (460)
T ss_pred             cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence            4422111100000000 01111211111000                     000    000001222333334445555


Q ss_pred             EEccccccccccccceEEEEEccCCC------ceEEEEEcCCC-CEEEEecCCCeEEEEECCCce------eeeeecCCC
Q 020454          138 RSIEVTKVSAESSCSTVKSWNVCASG------TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE------KIWTAKPPP  204 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~------~~~~~~~~~  204 (326)
                      |.++..       ++...+.++++..      -|++..|||.. +.+.-.+..|.|++-|++...      .++.....+
T Consensus       198 Wnl~i~-------D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~  270 (460)
T COG5170         198 WNLEII-------DGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDG  270 (460)
T ss_pred             cccccc-------CCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCc
Confidence            554332       2334444443221      27888999975 666677888999999998432      122211111


Q ss_pred             CCCCCc-CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC------------ce---EEEEecC
Q 020454          205 KNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------------PI---KAVAEEP  268 (326)
Q Consensus       205 ~~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~i---~~v~~s~  268 (326)
                      .+...+ .....|+.+.|++  +|+++++-. --+|+|||.+..+.|+.++..|..            .|   ..+.|+.
T Consensus       271 v~~~ff~eivsSISD~kFs~--ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg  347 (460)
T COG5170         271 VDVDFFEEIVSSISDFKFSD--NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG  347 (460)
T ss_pred             ccchhHHHHhhhhcceEEcC--CCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC
Confidence            111000 0123678889997  565665544 578999999988888888865432            22   3567888


Q ss_pred             CCCeEEEEcCCCcEEEEECC
Q 020454          269 DSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       269 ~~~~l~~g~~dg~v~iwd~~  288 (326)
                      |...+++|+..+..-+|-..
T Consensus       348 d~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         348 DDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             Ccccccccccccceeeeccc
Confidence            89999999998888887643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=4.4e-07  Score=79.19  Aligned_cols=142  Identities=13%  Similarity=0.113  Sum_probs=84.7

Q ss_pred             eEEEEEcCCCCEEEE-ecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCC--e
Q 020454          165 IAFSKVDISEKFSLF-GGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH--Q  238 (326)
Q Consensus       165 v~~~~~~~~~~~l~s-g~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg--~  238 (326)
                      .....|+|+++.|+. ...++.  |.++|+.+++... +..+.         .......|+|  +++.++..+ .++  .
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~---------~~~~~p~wSp--DG~~I~f~s~~~g~~~  331 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR---------AIDTEPSWHP--DGKSLIFTSERGGKPQ  331 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC---------CCccceEECC--CCCEEEEEECCCCCce
Confidence            346789999987764 455664  7778887765432 22211         1234668888  455555443 344  5


Q ss_pred             EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecceEEEEEECCCCCE
Q 020454          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  315 (326)
                      |.++|+.++ + ...+..........+|+|||++|+..+. ++  .|.++|+.+++... +...  .......|+|+++.
T Consensus       332 Iy~~dl~~g-~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~  406 (448)
T PRK04792        332 IYRVNLASG-K-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTM  406 (448)
T ss_pred             EEEEECCCC-C-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCE
Confidence            666677755 2 3333333333445689999999885544 44  45667888776532 2211  12234579999998


Q ss_pred             EEEeccCc
Q 020454          316 IASCGFLE  323 (326)
Q Consensus       316 l~s~s~D~  323 (326)
                      |+..+.++
T Consensus       407 I~~~~~~~  414 (448)
T PRK04792        407 VIYSTTYQ  414 (448)
T ss_pred             EEEEEecC
Confidence            77665543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.97  E-value=1.3e-07  Score=82.28  Aligned_cols=146  Identities=16%  Similarity=0.100  Sum_probs=97.9

Q ss_pred             CCceEEEEEcCCCCEEEEecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCC
Q 020454          162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDH  237 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg  237 (326)
                      ...+...+|+|++++|+....+   ..|.+||+.+++...... ..         ..+.+++|+|  +++.|+ +.+.++
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~---------~~~~~~~~sp--Dg~~l~~~~~~~~  256 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP---------GMNGAPAFSP--DGSKLAVSLSKDG  256 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC---------CCccceEECC--CCCEEEEEECCCC
Confidence            4468888999999998876543   479999998875433211 11         2244578888  454554 455444


Q ss_pred             --eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       238 --~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                        .|++||+.++ . ...+..+........|+|+|++|+..+. ++  .|+++|+.+++.. .+..+ ...+....|+|+
T Consensus       257 ~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spd  332 (417)
T TIGR02800       257 NPDIYVMDLDGK-Q-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPD  332 (417)
T ss_pred             CccEEEEECCCC-C-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCC
Confidence              5888898865 2 3444444444556789999998875543 33  5888888877643 33333 456778899999


Q ss_pred             CCEEEEeccCc
Q 020454          313 LPIIASCGFLE  323 (326)
Q Consensus       313 ~~~l~s~s~D~  323 (326)
                      +++|+.++.++
T Consensus       333 g~~i~~~~~~~  343 (417)
T TIGR02800       333 GDLIAFVHREG  343 (417)
T ss_pred             CCEEEEEEccC
Confidence            99998887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1e-07  Score=82.83  Aligned_cols=269  Identities=12%  Similarity=0.105  Sum_probs=171.1

Q ss_pred             eeeeeecCcccEEEEEecCCcC-----CC---cceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHG-----GV---PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~   86 (326)
                      .-+++|+.+|.+||..+.+...     |.   ..+...-.-..+...+..+.|.+.  ...|-++..+|.|.+|-+-+|.
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKLTtSDt~GlIiVWmlykgs  104 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKLTTSDTSGLIIVWMLYKGS  104 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccccccCCCceEEEEeeeccc
Confidence            4588999999999999876521     10   001111111344445555555443  3358889999999999998887


Q ss_pred             eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC-CCce
Q 020454           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTI  165 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v  165 (326)
                      ...+....      .....|.++.|..        ++..+....+||.|.+-+++.+           ++|.-.- ....
T Consensus       105 W~EEMiNn------RnKSvV~SmsWn~--------dG~kIcIvYeDGavIVGsvdGN-----------RIwgKeLkg~~l  159 (1189)
T KOG2041|consen  105 WCEEMINN------RNKSVVVSMSWNL--------DGTKICIVYEDGAVIVGSVDGN-----------RIWGKELKGQLL  159 (1189)
T ss_pred             HHHHHhhC------cCccEEEEEEEcC--------CCcEEEEEEccCCEEEEeeccc-----------eecchhcchhec
Confidence            76665541      3445677777644        6678888899998877665432           3443221 2345


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCce-------eeeeecCCCCCCCCcCCCCceeeeEEeec------CCCcEEEE
Q 020454          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLSI------DDHRKFVA  232 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------~~~~~l~~  232 (326)
                      ..+.|+++.+.++.+-.+|.+++||.+..-       +.....+...     ..+..+..+.|...      ++...|++
T Consensus       160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s-----~~~~kia~i~w~~g~~~~v~pdrP~lav  234 (1189)
T KOG2041|consen  160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS-----NFPTKIAEIEWNTGPYQPVPPDRPRLAV  234 (1189)
T ss_pred             cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec-----CCCccccceeeccCccccCCCCCCEEEE
Confidence            578899999888888889999999976421       1111111000     01122334444211      14448999


Q ss_pred             EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---------cEEEEECCCCeEEEEEcceecce
Q 020454          233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---------DLASVDIRTGKLLGCFIGKCSGS  303 (326)
Q Consensus       233 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---------~v~iwd~~~~~~~~~~~~~~~~~  303 (326)
                      +-.+|.+.|..-.+...|+. +... ..+....|+++|..|++++.+.         .|.+|.. -|+.+.+++.. ...
T Consensus       235 cy~nGr~QiMR~eND~~Pvv-~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp-g~~  310 (1189)
T KOG2041|consen  235 CYANGRMQIMRSENDPEPVV-VDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP-GSC  310 (1189)
T ss_pred             EEcCceehhhhhcCCCCCeE-Eecc-cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC-Cce
Confidence            99999999887665544543 2222 6788899999999999776542         4555543 47778888876 778


Q ss_pred             EEEEEECCCCCEEEEe
Q 020454          304 IRSIARHPTLPIIASC  319 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~  319 (326)
                      |+++.|--.+-.+|-+
T Consensus       311 It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  311 ITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             eeeeEEcCCceEEEEE
Confidence            9999997666555443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=1.1e-06  Score=76.83  Aligned_cols=211  Identities=12%  Similarity=0.027  Sum_probs=116.0

Q ss_pred             EeeeCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCC
Q 020454           58 SIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKG  133 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g  133 (326)
                      ...++++++.|+..+.+   ..|.+|++.+++.......         .+......+.+        ++..++ +...+|
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---------~g~~~~~~~Sp--------DG~~la~~~~~~g  265 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---------EGLNGAPAWSP--------DGSKLAFVLSKDG  265 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---------CCCcCCeEECC--------CCCEEEEEEccCC
Confidence            33455666677665533   3688899987765332111         12222344433        445554 455555


Q ss_pred             --cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CC--eEEEEECCCceeeeeecCCCCCCC
Q 020454          134 --KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GV--EVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       134 --~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                        .|++++++...        ..++..  .........|+|+++.|+..+. ++  .|.++|+.+++........     
T Consensus       266 ~~~Iy~~d~~~~~--------~~~lt~--~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-----  330 (430)
T PRK00178        266 NPEIYVMDLASRQ--------LSRVTN--HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-----  330 (430)
T ss_pred             CceEEEEECCCCC--------eEEccc--CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-----
Confidence              46666654322        111111  1223456789999987765443 33  5777787766543221110     


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeC-CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC-C--cE
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DL  282 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-g--~v  282 (326)
                           .......|+|  +++.++..+. ++  .|.+||+.++.  ...+... .......|+|+|+.++..+.+ |  .+
T Consensus       331 -----~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        331 -----NYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGS--VRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             -----CCccceEECC--CCCEEEEEEccCCceEEEEEECCCCC--EEEccCC-CCCCCceECCCCCEEEEEEecCCceEE
Confidence                 1122457887  4556665553 33  58889988652  2333221 222345899999998855543 3  47


Q ss_pred             EEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      .++++. +.....+..+ .+.+...+|+|-
T Consensus       401 ~~~~~~-g~~~~~l~~~-~g~~~~p~ws~~  428 (430)
T PRK00178        401 MLVSIN-GRVRLPLPTA-QGEVREPSWSPY  428 (430)
T ss_pred             EEEECC-CCceEECcCC-CCCcCCCccCCC
Confidence            777775 4444455554 667788888874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=8.6e-07  Score=76.82  Aligned_cols=145  Identities=12%  Similarity=0.096  Sum_probs=86.9

Q ss_pred             CceEEEEEcCCCCEEEEecC-----CCeEEEEECCCc---eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe
Q 020454          163 GTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~-----d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~  234 (326)
                      +.....+|+|||+.|+..+.     +-.+.+|++..+   +.........         ......+|+|  +|+.|+..+
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~wSP--DG~~Laf~s  299 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSFSP--DGTRLVFVS  299 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEECC--CCCEEEEEE
Confidence            34456789999987775442     223445776642   2111111110         1234568988  566666554


Q ss_pred             -CCCeEEEE--eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-C--CcEEEEECCCCeEEEEEcceecceEEEEE
Q 020454          235 -NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIA  308 (326)
Q Consensus       235 -~dg~v~iw--d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-d--g~v~iwd~~~~~~~~~~~~~~~~~v~~l~  308 (326)
                       .+|...+|  ++.........+......+....|+|||++|+..+. +  ..|.+||+.+++... +... ...+....
T Consensus       300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~  377 (428)
T PRK01029        300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPS  377 (428)
T ss_pred             CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceE
Confidence             46655555  443221223444444456778899999998885543 3  369999999887643 3322 34577899


Q ss_pred             ECCCCCEEEEec
Q 020454          309 RHPTLPIIASCG  320 (326)
Q Consensus       309 ~~p~~~~l~s~s  320 (326)
                      |+|+++.|+..+
T Consensus       378 wSpDG~~L~f~~  389 (428)
T PRK01029        378 WAIDSLHLVYSA  389 (428)
T ss_pred             ECCCCCEEEEEE
Confidence            999998776543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=3.1e-07  Score=77.52  Aligned_cols=254  Identities=12%  Similarity=0.070  Sum_probs=131.5

Q ss_pred             ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCC
Q 020454           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED  103 (326)
Q Consensus        24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  103 (326)
                      ..+.|||+.+|     .+...|.-... ....+--+-|+.+++++|.-.. .+|.||+...-.++.. +.       ..-
T Consensus       282 ~~l~IWDI~tG-----~lkrsF~~~~~-~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Ks-------lki  346 (698)
T KOG2314|consen  282 QQLIIWDIATG-----LLKRSFPVIKS-PYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KS-------LKI  346 (698)
T ss_pred             ceEEEEEcccc-----chhcceeccCC-CccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-cc-------cCC
Confidence            47899999988     44444443212 1222333456667777776555 6799999764332211 11       111


Q ss_pred             CCeeeeecccccccccCCCCceEEEEecCC-----cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKG-----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  178 (326)
                      ..|....+.+        .+..|+-++..-     .+.+..+....     .-.+..++++.    =..|-|..+|.+|+
T Consensus       347 ~gIr~FswsP--------~~~llAYwtpe~~~~parvtL~evPs~~-----~iRt~nlfnVs----DckLhWQk~gdyLc  409 (698)
T KOG2314|consen  347 SGIRDFSWSP--------TSNLLAYWTPETNNIPARVTLMEVPSKR-----EIRTKNLFNVS----DCKLHWQKSGDYLC  409 (698)
T ss_pred             ccccCcccCC--------CcceEEEEcccccCCcceEEEEecCccc-----eeeeccceeee----ccEEEeccCCcEEE
Confidence            3455555543        223333332211     11111111110     01111111111    01234445556554


Q ss_pred             E----------ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---CCeEEEEeCC
Q 020454          179 F----------GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTS  245 (326)
Q Consensus       179 s----------g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---dg~v~iwd~~  245 (326)
                      .          .+.-..+.|+.++.......       .  +.....|-..+|-|.  |+.+++-+.   ..++.+|.+.
T Consensus       410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve-------~--velke~vi~FaWEP~--gdkF~vi~g~~~k~tvsfY~~e  478 (698)
T KOG2314|consen  410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVE-------V--VELKESVIAFAWEPH--GDKFAVISGNTVKNTVSFYAVE  478 (698)
T ss_pred             EEEEeeccccccceEeeEEEEEeeccCCCce-------e--eecchheeeeeeccC--CCeEEEEEccccccceeEEEee
Confidence            3          22223455665554322111       1  111234667788885  445655443   3478889877


Q ss_pred             -CCCCceeEEeecCCceEEEEecCCCCeEEEE---cCCCcEEEEECCCCeEEEE-EcceecceEEEEEECCCCCEEEEec
Q 020454          246 -AQRRPVMSFDFRETPIKAVAEEPDSFNIYIG---NGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       246 -~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g---~~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                       +..++...........+.+.|+|.|++++++   +..|.+.++|..-..+... ...|  -..+.+.|.|.|+|++|++
T Consensus       479 ~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtGRYvvT~s  556 (698)
T KOG2314|consen  479 TNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTGRYVVTSS  556 (698)
T ss_pred             cCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCCCEEEEee
Confidence             3323322333344667889999999999855   4578899999874222211 1222  3467889999999999998


Q ss_pred             cC
Q 020454          321 FL  322 (326)
Q Consensus       321 ~D  322 (326)
                      .-
T Consensus       557 s~  558 (698)
T KOG2314|consen  557 SS  558 (698)
T ss_pred             eh
Confidence            54

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=2.7e-06  Score=73.82  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCEEEEec-CCCeEEEE--ECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---C
Q 020454          165 IAFSKVDISEKFSLFGG-KGVEVNVW--DLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H  237 (326)
Q Consensus       165 v~~~~~~~~~~~l~sg~-~d~~i~iw--d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g  237 (326)
                      .....|+|+|+.|+..+ .++...||  ++.. +.....+....         ..+....|+|  +++.|+..+.+   .
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~---------~~~~~p~wSP--DG~~Laf~~~~~g~~  351 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY---------RNSSCPAWSP--DGKKIAFCSVIKGVR  351 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC---------CCccceeECC--CCCEEEEEEcCCCCc
Confidence            45678999998776554 46655555  4432 11122221111         2345678988  56677765443   4


Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE-EcC--CCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~-g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      .|.+||+.++ + ...+......+....|+|||+.|+. +..  ...|+++|+.+++...... . .+.+...+|+|-
T Consensus       352 ~I~v~dl~~g-~-~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~-~g~~~~p~Ws~~  425 (428)
T PRK01029        352 QICVYDLATG-R-DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-G-SGEKRFPSWGAF  425 (428)
T ss_pred             EEEEEECCCC-C-eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-CCcccCceecCC
Confidence            7999999876 3 3444433445677899999998874 333  3468889998776544443 3 556778888874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.93  E-value=3.6e-06  Score=80.57  Aligned_cols=251  Identities=10%  Similarity=0.006  Sum_probs=138.4

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC------CCCCCeeeeecccccccccCCCCceEEEE-ecCCcEE
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ------PEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKAS  136 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~  136 (326)
                      .+.++++-+.++.|++||.. ++.+..+.........      ..-....++++.+        +++.|+++ ..++.|+
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--------~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--------KKNLLYVADTENHALR  649 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--------CCCEEEEEeCCCceEE
Confidence            34466777788999999984 5544443321110000      0011234455432        33444444 4556777


Q ss_pred             EEEccccccccccccceE-EEEEc------cCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeee-cCCCCC-
Q 020454          137 MRSIEVTKVSAESSCSTV-KSWNV------CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKN-  206 (326)
Q Consensus       137 i~~~~~~~~~~~~~~~~~-~~~~~------~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~-  206 (326)
                      .+++......+-...+.. ..+.-      ..-..-..++++| ++.++++...++.|++||..++...... .+.... 
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            777644221000000000 00000      0011235789999 4566677778899999999876543211 110000 


Q ss_pred             ---CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee------------EEeec--------CCceEE
Q 020454          207 ---SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM------------SFDFR--------ETPIKA  263 (326)
Q Consensus       207 ---~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~--------~~~i~~  263 (326)
                         ...........+++++|. .+.++++-+.++.|++||+.++...+.            .+-..        -.....
T Consensus       730 ~g~~~~~~~~~~P~GIavspd-G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPD-LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCccccccccCccEEEEeCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence               000001134567899884 233666777789999999886521110            00000        012357


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-------------ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-------------GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       264 v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-------------~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++++++|+.+++-..++.|++||..++.......             +. -.....|+++++++++++-+.++.+
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~-l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ-LSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc-cCCceEEEEeCCCCEEEEECCCCEE
Confidence            8999999988888889999999998876653221             11 1246789999999988887776654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=3.9e-09  Score=83.59  Aligned_cols=142  Identities=17%  Similarity=0.149  Sum_probs=102.3

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      ...|.++.|+..++++..|..+|.|..+|++...     ++.......+.|+..|+++..... +.+.|++.+.+|+|++
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-----qG~~~~a~rlyh~Ssvtslq~Lq~-s~q~LmaS~M~gkikL  325 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-----QGNGWCAQRLYHDSSVTSLQILQF-SQQKLMASDMTGKIKL  325 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecc-----cCCCcceEEEEcCcchhhhhhhcc-ccceEeeccCcCceeE
Confidence            4568889999889999999999999999998651     111111122456677888776643 3458999999999999


Q ss_pred             EeCCCCCCc---eeEEeecCCceEEE--EecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce---ecceEEEEEEC
Q 020454          242 YDTSAQRRP---VMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARH  310 (326)
Q Consensus       242 wd~~~~~~~---~~~~~~~~~~i~~v--~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~~  310 (326)
                      ||+|.- +.   +.++++|-..-.-+  -..+....|++++.|...+||.++.|.++.+++-.   .+..+.+++|.
T Consensus       326 yD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  326 YDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            999965 34   67777774422222  33456778889999999999999999998877632   02345666665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.89  E-value=7.7e-06  Score=78.40  Aligned_cols=162  Identities=11%  Similarity=0.087  Sum_probs=99.0

Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEE-----ccCCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCceee
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKI  197 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~  197 (326)
                      ..+++...++.|++|+...........++.....+     ...-.....++++|+++ ++++-..++.|++||+.++...
T Consensus       696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~  775 (1057)
T PLN02919        696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR  775 (1057)
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            35566677888898886543211000011000000     00112456799999987 4455566789999999876532


Q ss_pred             eeecCCC---C------------CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee------
Q 020454          198 WTAKPPP---K------------NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------  256 (326)
Q Consensus       198 ~~~~~~~---~------------~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------  256 (326)
                      ....+..   .            ....+   ....++++.+  +++++++-+.+++|++||..++ . +..+.+      
T Consensus       776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l---~~P~Gvavd~--dG~LYVADs~N~rIrviD~~tg-~-v~tiaG~G~~G~  848 (1057)
T PLN02919        776 LLAGGDPTFSDNLFKFGDHDGVGSEVLL---QHPLGVLCAK--DGQIYVADSYNHKIKKLDPATK-R-VTTLAGTGKAGF  848 (1057)
T ss_pred             EEEecccccCcccccccCCCCchhhhhc---cCCceeeEeC--CCcEEEEECCCCEEEEEECCCC-e-EEEEeccCCcCC
Confidence            2111100   0            00011   1234778876  5668888899999999999865 2 223221      


Q ss_pred             --------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          257 --------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       257 --------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                              .-.....++++++|+.+++-+.++.|++||+++++.
T Consensus       849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                    112467899999999888888899999999998764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.88  E-value=1.3e-07  Score=76.54  Aligned_cols=162  Identities=11%  Similarity=0.143  Sum_probs=98.1

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      .+.++.++|++..+....+++...... .+.......+      .....+.+..        .+...+.+-..|.++-++
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~------~~~~ai~~~~--------~~~sv~v~dkagD~~~~d  135 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP------KRPTAISFIR--------EDTSVLVADKAGDVYSFD  135 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc------cCcceeeeee--------ccceEEEEeecCCceeee
Confidence            355667888888888877777653332 1222211111      1112222222        345566666566555444


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      +-....      +.. .-.+.|-..++.++++||+++|+++..|..|++-.....-.+..        +.+.|...|..+
T Consensus       136 i~s~~~------~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies--------fclGH~eFVS~i  200 (390)
T KOG3914|consen  136 ILSADS------GRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES--------FCLGHKEFVSTI  200 (390)
T ss_pred             eecccc------cCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--------hccccHhheeee
Confidence            332110      000 00123345688999999999999999999999977653332222        334455778898


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                      +.-+   ++.|++++.|+++++||+++++. +.++.
T Consensus       201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~-L~t~d  232 (390)
T KOG3914|consen  201 SLTD---NYLLLSGSGDKTLRLWDITSGKL-LDTCD  232 (390)
T ss_pred             eecc---CceeeecCCCCcEEEEecccCCc-ccccc
Confidence            8875   34799999999999999998843 45544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=9.7e-08  Score=82.96  Aligned_cols=239  Identities=13%  Similarity=0.073  Sum_probs=150.0

Q ss_pred             EEeeeCCCCCeEEEEecCCcEEEEeccccceeee---e---ccc-CCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           57 ASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA---I---SNA-GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        57 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~---~---~~~-~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      -|..|..+..++++|+.||.+++..+.+..--..   +   ..+ .+-...+|.+.|.-..|-.        ...++-+.
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--------~~QKLTtS   89 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--------NNQKLTTS   89 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--------cccccccc
Confidence            3445667777999999999999998764321000   0   000 1111236667777565433        33567777


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee-eecCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSL  208 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~~~~~~~  208 (326)
                      ..+|.|.+|-+-....     -..  ..+-+...-|.+|+|+.+|..++....||.|.+=.+...+.-- .+++.     
T Consensus        90 Dt~GlIiVWmlykgsW-----~EE--MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~-----  157 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSW-----CEE--MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ-----  157 (1189)
T ss_pred             CCCceEEEEeeecccH-----HHH--HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh-----
Confidence            7888888887543221     100  0122335578999999999999999999999887765443311 12221     


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC------CceeEE----eecCCceEEEEec--------CCC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSF----DFRETPIKAVAEE--------PDS  270 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~----~~~~~~i~~v~~s--------~~~  270 (326)
                            -.+.+.|++  |.+.++.+-.+|.+.+||....-      .+....    ......|..+.|.        |+.
T Consensus       158 ------~l~hv~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr  229 (1189)
T KOG2041|consen  158 ------LLAHVLWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR  229 (1189)
T ss_pred             ------eccceeecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence                  134667887  44567777778999999965321      111111    1112235556664        577


Q ss_pred             CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       271 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..++++-.+|.+.|-.-.+......+..  .-.|....|+++|.+||.||.|..+
T Consensus       230 P~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da  282 (1189)
T KOG2041|consen  230 PRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDA  282 (1189)
T ss_pred             CEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccc
Confidence            8899999999998876554433333331  3478899999999999999988654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.85  E-value=1.8e-08  Score=76.83  Aligned_cols=144  Identities=12%  Similarity=0.083  Sum_probs=87.4

Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCC-CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      .++-+++++.|+.+.+++.+.-   +.++.. ............+....+...  + .+.+-..-+..+.|+++..+...
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s--~-~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILS--G-GCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             cCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEec--C-CcceEeeccceeeeccccccccc
Confidence            4677899999999999998752   211110 000000101111111112111  0 11112223445667766543322


Q ss_pred             eEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEE-EEEcceecceEEEEEECC-CCCEEEEeccCcc
Q 020454          252 MSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHP-TLPIIASCGFLEA  324 (326)
Q Consensus       252 ~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~  324 (326)
                      ...+.. ..|++++-+|.. +.+++|+.||.+.+||.+..... ..+..| +.+|+.+.||| +...|++++.||.
T Consensus       174 ~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGs  247 (319)
T KOG4714|consen  174 PSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGS  247 (319)
T ss_pred             cccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCc
Confidence            222233 349999999975 45669999999999999987544 345677 99999999999 5568999999996

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.80  E-value=4.1e-05  Score=61.80  Aligned_cols=268  Identities=12%  Similarity=0.130  Sum_probs=147.9

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccc-cceeeeecccCCCCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAISNAGDSGA   99 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~-~~~~~~~~~~~~~~~   99 (326)
                      ++|-|-.+.++.. .|...+.-+...+..+-+.++  .  +.++++|+++. ..|.|.++.+.+ |.+............
T Consensus        62 ~~ggvaay~iD~~-~G~Lt~ln~~~~~g~~p~yvs--v--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~  136 (346)
T COG2706          62 EEGGVAAYRIDPD-DGRLTFLNRQTLPGSPPCYVS--V--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS  136 (346)
T ss_pred             CcCcEEEEEEcCC-CCeEEEeeccccCCCCCeEEE--E--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC
Confidence            4677777777753 344434333333333334332  2  33455666664 459999999854 555444333322211


Q ss_pred             CCCC---CCeeeeecccccccccCCCCceEEEEec-CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454          100 QPED---DGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (326)
Q Consensus       100 ~~~~---~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  175 (326)
                      ..+.   .+-...+.+.       ++..+++++.- -..|.+|+++.... .     ......++.+..-+-|.|||+++
T Consensus       137 ~p~~rQ~~~h~H~a~~t-------P~~~~l~v~DLG~Dri~~y~~~dg~L-~-----~~~~~~v~~G~GPRHi~FHpn~k  203 (346)
T COG2706         137 GPHERQESPHVHSANFT-------PDGRYLVVPDLGTDRIFLYDLDDGKL-T-----PADPAEVKPGAGPRHIVFHPNGK  203 (346)
T ss_pred             CCCccccCCccceeeeC-------CCCCEEEEeecCCceEEEEEcccCcc-c-----cccccccCCCCCcceEEEcCCCc
Confidence            1111   1111222222       13445555543 35678888773221 1     12222335567788999999999


Q ss_pred             EEEEec-CCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CCeEEEEeCCCCCCcee
Q 020454          176 FSLFGG-KGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       176 ~l~sg~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~  252 (326)
                      +..... .+++|.+|..... ..+..++.+..-...+.-..|..++..+|  +|++|.++.+ ...|-+|.+......+.
T Consensus       204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~--dGrFLYasNRg~dsI~~f~V~~~~g~L~  281 (346)
T COG2706         204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP--DGRFLYASNRGHDSIAVFSVDPDGGKLE  281 (346)
T ss_pred             EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC--CCCEEEEecCCCCeEEEEEEcCCCCEEE
Confidence            876544 6889999999874 33444444333333344456777888887  6767776643 34777777664322222


Q ss_pred             E---EeecCCceEEEEecCCCCeEEEEcCC-CcEEEEECC--CCeEEEEEcceecceEEEEEE
Q 020454          253 S---FDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIR--TGKLLGCFIGKCSGSIRSIAR  309 (326)
Q Consensus       253 ~---~~~~~~~i~~v~~s~~~~~l~~g~~d-g~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~  309 (326)
                      .   ...+...-+...|++.|++|+++.++ ..|.+|...  +|++-............||.|
T Consensus       282 ~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f  344 (346)
T COG2706         282 LVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF  344 (346)
T ss_pred             EEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence            2   22233346788999999999988775 468888665  565543222111334445555

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=2.1e-08  Score=55.13  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=35.3

Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                      ++.++..|...|++++|+|++++|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.79  E-value=2.4e-07  Score=75.05  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      |-..++.++++|  |+++++++..|..|++-..... ..+.+|- +|..-|..++.-++ ..|++|+.|+++++||+++|
T Consensus       150 hvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  150 HVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhhhheeeecC--CCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence            445688999998  4569999999999999886643 3355554 58899999998654 46899999999999999999


Q ss_pred             eEEEEEc
Q 020454          291 KLLGCFI  297 (326)
Q Consensus       291 ~~~~~~~  297 (326)
                      +.+..+.
T Consensus       226 k~L~t~d  232 (390)
T KOG3914|consen  226 KLLDTCD  232 (390)
T ss_pred             Ccccccc
Confidence            9886654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=2e-07  Score=78.79  Aligned_cols=272  Identities=10%  Similarity=0.067  Sum_probs=158.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..+++++.|.+||+|.++.+-.+...-..+|.-..+...+..+.+..+-    -.+++.||-|.+||.--+..+..+...
T Consensus       748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l----r~i~ScD~giHlWDPFigr~Laq~~da  823 (1034)
T KOG4190|consen  748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL----RSIASCDGGIHLWDPFIGRLLAQMEDA  823 (1034)
T ss_pred             cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc----ceeeeccCcceeecccccchhHhhhcC
Confidence            5688999999999999987623333222344444455555555555442    266788999999999877766544321


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccC----CCceEEEE
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSK  169 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~  169 (326)
                         +.....+.|.++.-..         ...+++ |+...+++++|-+..+        -...|++..    ..-+.+++
T Consensus       824 ---pk~~a~~~ikcl~nv~---------~~iliAgcsaeSTVKl~DaRsce--------~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  824 ---PKEGAGGNIKCLENVD---------RHILIAGCSAESTVKLFDARSCE--------WTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             ---cccCCCceeEecccCc---------chheeeeccchhhheeeeccccc--------ceeeEEeccCCCCchheeEEE
Confidence               1123334555554322         223444 4788899999855433        344444432    24588999


Q ss_pred             EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE-EeCCCCC
Q 020454          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTSAQR  248 (326)
Q Consensus       170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i-wd~~~~~  248 (326)
                      +.+.|+.++.+-.+|.|.+.|.++++.+.......-+.+++..          |  ..+.++....|..+.+ |....+ 
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa----------p--sdq~L~~saldHslaVnWhaldg-  950 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA----------P--SDQALAQSALDHSLAVNWHALDG-  950 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC----------c--hhHHHHhhcccceeEeeehhcCC-
Confidence            9999999999999999999999999987766655444433311          2  1225666666777777 654433 


Q ss_pred             CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC----CeEEEEEcc-eecceEEEEEECCCCCEEEEeccCc
Q 020454          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----GKLLGCFIG-KCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----~~~~~~~~~-~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ....+.+....+..-+  -.-|.-+++......+.+|.-..    ...+.+++. ...+..++++.-|-+.-+..|..-|
T Consensus       951 imh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen  951 IMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred             eeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence            1112221111111111  11255566665556666664221    011112221 1255677888888665555666665


Q ss_pred             cC
Q 020454          324 AA  325 (326)
Q Consensus       324 ~~  325 (326)
                      ++
T Consensus      1029 ~I 1030 (1034)
T KOG4190|consen 1029 AI 1030 (1034)
T ss_pred             ce
Confidence            53

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.76  E-value=3.4e-07  Score=81.63  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc---eeEEeecCC
Q 020454          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRET  259 (326)
Q Consensus       183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~  259 (326)
                      |..|++||++..+.+.-+.-+...          .-+.|+|.- ...+++++..|...+-|..+...|   +..+.....
T Consensus       245 D~FvkVYDLRmmral~PI~~~~~P----------~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s  313 (1118)
T KOG1275|consen  245 DPFVKVYDLRMMRALSPIQFPYGP----------QFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS  313 (1118)
T ss_pred             cchhhhhhhhhhhccCCcccccCc----------hhhhhcccc-cceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence            556899999977765544333211          234677763 347899999999999994433222   333434455


Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                      .+..+.++++++.++.|..+|.|.+|.-
T Consensus       314 ~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  314 GISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cceeEEecCCCceEEEecccCcEeeecC
Confidence            6999999999999999999999999973

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=7e-07  Score=77.97  Aligned_cols=144  Identities=13%  Similarity=0.099  Sum_probs=93.2

Q ss_pred             CCceEEEEEcCCCCEEEEecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCC
Q 020454          162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDH  237 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg  237 (326)
                      ...+....|+|+|+.|+..+.+   ..|.+||+.+++..... ...         .......|+|  +++.|+ +.+.++
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt-~~~---------g~~~~~~wSP--DG~~La~~~~~~g  284 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT-SFP---------GINGAPRFSP--DGKKLALVLSKDG  284 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec-CCC---------CCcCCeeECC--CCCEEEEEEeCCC
Confidence            4578889999999888765432   35889999877643221 111         1123568888  455555 456666


Q ss_pred             e--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCC--cEEEEECCCCeEEEE-EcceecceEEEEEECC
Q 020454          238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSG--DLASVDIRTGKLLGC-FIGKCSGSIRSIARHP  311 (326)
Q Consensus       238 ~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg--~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p  311 (326)
                      .  |+++|+.++ + ...+..+.......+|+|||++|+..+ .++  .|+++|+.+++.... +.++   .....+|+|
T Consensus       285 ~~~Iy~~dl~tg-~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~---~~~~~~~Sp  359 (448)
T PRK04792        285 QPEIYVVDIATK-A-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE---QNLGGSITP  359 (448)
T ss_pred             CeEEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC---CCcCeeECC
Confidence            4  777788765 3 445545555567789999999887544 344  477778877765432 2322   334578999


Q ss_pred             CCCEEEEeccC
Q 020454          312 TLPIIASCGFL  322 (326)
Q Consensus       312 ~~~~l~s~s~D  322 (326)
                      ++++|+..+.+
T Consensus       360 DG~~l~~~~~~  370 (448)
T PRK04792        360 DGRSMIMVNRT  370 (448)
T ss_pred             CCCEEEEEEec
Confidence            99988876654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=1.3e-07  Score=75.25  Aligned_cols=166  Identities=8%  Similarity=0.096  Sum_probs=108.2

Q ss_pred             EEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc
Q 020454           69 AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE  148 (326)
Q Consensus        69 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~  148 (326)
                      ++.+.+-.|-+-|+++|.. ..+..         ...|.++.+..        .++.++.|..+|.|..+|++....  +
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~s---------ksDVfAlQf~~--------s~nLv~~GcRngeI~~iDLR~rnq--G  287 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQS---------KSDVFALQFAG--------SDNLVFNGCRNGEIFVIDLRCRNQ--G  287 (425)
T ss_pred             ecccccceeEEEEeecccc-ccccc---------chhHHHHHhcc--------cCCeeEecccCCcEEEEEeeeccc--C
Confidence            3344455677777766654 22222         14566666544        567999999999999999987642  2


Q ss_pred             cccceEEEEEccCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          149 SSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                      ......+++   ++..|+++..-. ++.+|++.+.+|+|++||++--+.   +.+..+|.....-+         -++-+
T Consensus       288 ~~~~a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l---------~~~v~  355 (425)
T KOG2695|consen  288 NGWCAQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL---------PAHVK  355 (425)
T ss_pred             CCcceEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc---------ccccc
Confidence            222233333   467788887766 678888889999999999987655   67777765443211         12222


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC----ceEEEEec
Q 020454          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET----PIKAVAEE  267 (326)
Q Consensus       225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~i~~v~~s  267 (326)
                      ++...+++++.|...|||.++.+ +.+.++.....    .+.+++|.
T Consensus       356 ~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  356 EEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cccceEEEccCeeEEEEEecccC-ceeeccCCCCccccccccceehh
Confidence            23337888999999999999977 65666654433    34455553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.75  E-value=1.7e-05  Score=66.61  Aligned_cols=99  Identities=13%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcEEEEECCCC
Q 020454          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTG  290 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~~~~  290 (326)
                      ..|...+|.|..++--+++|-++-.+.++|++..   + .+...+..=..+.|+|.+++++.++-|   |.+-+||....
T Consensus       275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ccceeeeecccCCceeEEecccccceeecccccc---e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            5688999999655433444557889999999954   2 333445556777899999999976654   67999998765


Q ss_pred             eEEE-EEcceecceEEEEEECCCCCEEEEe
Q 020454          291 KLLG-CFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       291 ~~~~-~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ..+. .+.+.   ...-..|+|+++++-+.
T Consensus       351 f~~~~~~~~~---n~s~~~wspd~qF~~~~  377 (561)
T COG5354         351 FKVAGAFNGL---NTSYCDWSPDGQFYDTD  377 (561)
T ss_pred             eEEEEEeecC---CceEeeccCCceEEEec
Confidence            4443 55543   34455788998877654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=5.6e-06  Score=70.22  Aligned_cols=221  Identities=10%  Similarity=0.025  Sum_probs=134.7

Q ss_pred             CCCCCeEEEEec-----------CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           62 SQNDPLLAVARK-----------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        62 ~~~~~~l~~g~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ++.++||++-+.           ...+.|||+.+|.++..+..+.      ....+..+-.+.        .++.+++.-
T Consensus       258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------~~~~~WP~frWS--------~DdKy~Arm  323 (698)
T KOG2314|consen  258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK------SPYLKWPIFRWS--------HDDKYFARM  323 (698)
T ss_pred             CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC------CCccccceEEec--------cCCceeEEe
Confidence            445557776432           2579999999999998888641      223333343343        556666666


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCC-----CeEEEEECCCceeeeeecCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~  203 (326)
                      ....|.||+.....           +++.+  .-..|....|+|.+++||-=...     ..+.+-.+.+++.+....-+
T Consensus       324 ~~~sisIyEtpsf~-----------lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf  392 (698)
T KOG2314|consen  324 TGNSISIYETPSFM-----------LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF  392 (698)
T ss_pred             ccceEEEEecCcee-----------eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce
Confidence            66888888744321           22211  12468888999998888763322     23455555555444432221


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEE----------eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAG----------TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI  273 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l  273 (326)
                                 .|..+..+-.++|.+|+.-          +.-..+.|+.++...-|+..+... ..|...+|-|.|+.+
T Consensus       393 -----------nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk-e~vi~FaWEP~gdkF  460 (698)
T KOG2314|consen  393 -----------NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK-ESVIAFAWEPHGDKF  460 (698)
T ss_pred             -----------eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc-hheeeeeeccCCCeE
Confidence                       1333333333455555532          222346778888665677776655 567888999999887


Q ss_pred             EEEc--C-CCcEEEEECCC-C---eEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          274 YIGN--G-SGDLASVDIRT-G---KLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       274 ~~g~--~-dg~v~iwd~~~-~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      ++-+  . ..++.+|.+++ .   +++..+.   ....+.+.|+|.|++++.+..=
T Consensus       461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~  513 (698)
T KOG2314|consen  461 AVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALV  513 (698)
T ss_pred             EEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEec
Confidence            7333  2 35689998873 2   3344444   3467889999999999987653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=1.3e-05  Score=69.21  Aligned_cols=233  Identities=12%  Similarity=0.143  Sum_probs=126.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+++.++.+|.+..+|.+++     ++  .|..+.... +.+.-..   .+..++++..+|.|..+|.++|+.+..+...
T Consensus       121 ~~v~v~~~~g~l~ald~~tG-----~~--~W~~~~~~~-~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDG-----EV--AWQTKVAGE-ALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCC-----CC--cccccCCCc-eecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence            57888999999999999887     44  333221111 1110000   1235788889999999999999987766532


Q ss_pred             CCCC-CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------------
Q 020454           95 GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------------  145 (326)
Q Consensus        95 ~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------------  145 (326)
                      .+.. ......++.              .++.++.++.+|.+..++......                            
T Consensus       190 ~~~~~~~~~~sP~v--------------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~  255 (394)
T PRK11138        190 VPSLTLRGESAPAT--------------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV  255 (394)
T ss_pred             CCcccccCCCCCEE--------------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence            1100 000011111              112344445555544433322110                            


Q ss_pred             ----ccccccceEEEEEccCCCceEEEEE------cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454          146 ----SAESSCSTVKSWNVCASGTIAFSKV------DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (326)
Q Consensus       146 ----~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  215 (326)
                          .....++.+..++......+....+      ...+..++.++.++.+..+|..+++.+++.......        .
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--------~  327 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR--------L  327 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC--------c
Confidence                0000112222222222222221111      113466777788999999999999888764321111        0


Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEEEC
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                      ..+....   ++ .++.++.+|.++..|..++ +.+.+.+.....+.+ ..+  .+..|++++.||.|+.++.
T Consensus       328 ~~sp~v~---~g-~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        328 LTAPVLY---NG-YLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ccCCEEE---CC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            1111222   33 7888999999999999987 556666544333332 122  3558899999999988864

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.73  E-value=2.9e-05  Score=60.75  Aligned_cols=196  Identities=15%  Similarity=0.116  Sum_probs=122.9

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~  199 (326)
                      +++.+++.-.|..|.+...+.+-      ...+....+..  ...=+.++|+||+.+||.+...|+|++||+.. ..++.
T Consensus         7 ~~Gk~lAi~qd~~iEiRsa~Ddf------~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~   79 (282)
T PF15492_consen    7 SDGKLLAILQDQCIEIRSAKDDF------SSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV   79 (282)
T ss_pred             CCCcEEEEEeccEEEEEeccCCc------hheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence            56778888888888877654332      11223333322  23467899999999999999999999999975 33444


Q ss_pred             ecCCCCCCCCcCCCCceeeeEEeecCC----CcEEEEEeCCCeEEEEeCCC----CCCceeEEee---cCCceEEEEecC
Q 020454          200 AKPPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGTNDHQVRLYDTSA----QRRPVMSFDF---RETPIKAVAEEP  268 (326)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~---~~~~i~~v~~s~  268 (326)
                      +.........  ....|.++.|.....    ...|++...+|.++=|-+..    .-+..+++..   ....|.++.|+|
T Consensus        80 I~p~~~~~~d--~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   80 IPPAMSFPGD--LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             cCcccccCCc--cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            4332211111  123566777765321    22577778888888777532    1123455554   345899999999


Q ss_pred             CCCeEEEEcC-CC----------cEEEEECCCCeE------------------------E----EEEcceecceEEEEEE
Q 020454          269 DSFNIYIGNG-SG----------DLASVDIRTGKL------------------------L----GCFIGKCSGSIRSIAR  309 (326)
Q Consensus       269 ~~~~l~~g~~-dg----------~v~iwd~~~~~~------------------------~----~~~~~~~~~~v~~l~~  309 (326)
                      ..+.|++|+. ..          -+..|.+-++.+                        +    ...++.....|..|..
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            9888776543 22          245565433211                        0    0011112567899999


Q ss_pred             CCCCCEEEEeccCccCC
Q 020454          310 HPTLPIIASCGFLEAAS  326 (326)
Q Consensus       310 ~p~~~~l~s~s~D~~~~  326 (326)
                      +|++..||+...+|..+
T Consensus       238 SPdg~~La~ih~sG~ls  254 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLS  254 (282)
T ss_pred             CCCCCEEEEEEcCCeEE
Confidence            99999999999998753

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.72  E-value=1.3e-05  Score=64.08  Aligned_cols=210  Identities=16%  Similarity=0.209  Sum_probs=124.3

Q ss_pred             CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce
Q 020454           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST  153 (326)
Q Consensus        74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~  153 (326)
                      +|+|..||..+|+.+.....-      .......... ..        .++.+++++.++.++.+|.....         
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~------~~~~~~~~~~-~~--------~~~~v~~~~~~~~l~~~d~~tG~---------   57 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG------PGIGGPVATA-VP--------DGGRVYVASGDGNLYALDAKTGK---------   57 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS------SSCSSEEETE-EE--------ETTEEEEEETTSEEEEEETTTSE---------
T ss_pred             CCEEEEEECCCCCEEEEEECC------CCCCCccceE-EE--------eCCEEEEEcCCCEEEEEECCCCC---------
Confidence            689999999999988777541      1112222111 11        45678888999999999965432         


Q ss_pred             EEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee-cCCCCCCCCcCCCCceeeeEEeecCCCcEEEE
Q 020454          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (326)
Q Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~  232 (326)
                       .+|.......+.... ...+..++++..++.|..+|..+++.++.. .... +....     ........  .+..+++
T Consensus        58 -~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-----~~~~~~~~--~~~~~~~  127 (238)
T PF13360_consen   58 -VLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGV-----RSSSSPAV--DGDRLYV  127 (238)
T ss_dssp             -EEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCST-----B--SEEEE--ETTEEEE
T ss_pred             -EEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc-ccccc-----ccccCceE--ecCEEEE
Confidence             244443333222111 123455566668889999999999999984 3321 11111     11112222  2347888


Q ss_pred             EeCCCeEEEEeCCCCCCceeEEeecCCc----------e-EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec
Q 020454          233 GTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (326)
Q Consensus       233 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------i-~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~  301 (326)
                      +..++.|..+|++++ +.+.........          + ..+.+. ++ .++.++.++.+..+|+.+++.+.+..   .
T Consensus       128 ~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~  201 (238)
T PF13360_consen  128 GTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP---I  201 (238)
T ss_dssp             EETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC---S
T ss_pred             EeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec---C
Confidence            888999999999988 556666654322          1 233332 34 78888888864444999999764333   2


Q ss_pred             ceEEEEEECCCCCEEEEeccCcc
Q 020454          302 GSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       302 ~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      ..+..+ ..+++..|+.++.|+.
T Consensus       202 ~~~~~~-~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  202 SGIYSL-PSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             S-ECEC-EECCCTEEEEEETTTE
T ss_pred             CCccCC-ceeeCCEEEEEeCCCE
Confidence            233332 2356667777766654

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.72  E-value=9.2e-06  Score=68.17  Aligned_cols=208  Identities=12%  Similarity=0.065  Sum_probs=123.2

Q ss_pred             cEEEEeccccceeeeecccCCCCCCCCCCC-eeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (326)
Q Consensus        76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~  154 (326)
                      .+.+||+.+|.++..+.....+    .-+. +  +.+ .        .++.+++--....++++++.. .. .   ....
T Consensus       109 ~~~vwd~~sg~iv~sf~~~~q~----~~~Wp~--~k~-s--------~~D~y~ARvv~~sl~i~e~t~-n~-~---~~p~  168 (561)
T COG5354         109 NVFVWDIASGMIVFSFNGISQP----YLGWPV--LKF-S--------IDDKYVARVVGSSLYIHEITD-NI-E---EHPF  168 (561)
T ss_pred             ceeEEeccCceeEeeccccCCc----ccccce--eee-e--------ecchhhhhhccCeEEEEecCC-cc-c---cCch
Confidence            5999999999988887753211    0011 2  222 2        222333333566788888622 11 1   1111


Q ss_pred             EEEEccCCCceEEEEEcCCC--CEEEE-----ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC
Q 020454          155 KSWNVCASGTIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (326)
Q Consensus       155 ~~~~~~~~~~v~~~~~~~~~--~~l~s-----g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  227 (326)
                      +..+   ...|....++|.+  ..||.     .+....++||.+..++.+....-...+.         ..+.|.+.  |
T Consensus       169 ~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~---------~qLkW~~~--g  234 (561)
T COG5354         169 KNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG---------VQLKWQVL--G  234 (561)
T ss_pred             hhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc---------cEEEEecC--C
Confidence            1111   3567888888864  33443     5778889999998665543322111111         13455553  3


Q ss_pred             cEEEEE--e---------CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE--EEcCCCcEEEEECCCCeEEE
Q 020454          228 RKFVAG--T---------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY--IGNGSGDLASVDIRTGKLLG  294 (326)
Q Consensus       228 ~~l~~~--~---------~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~--~g~~dg~v~iwd~~~~~~~~  294 (326)
                      ++|+.-  .         ....++|++++...  +.......++|...+|.|.++.++  .|-..-.+.++|++.. +..
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~--i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~  311 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERS--IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF  311 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeecccc--cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE
Confidence            333221  1         12467888887432  222225578999999999987766  5567889999999865 544


Q ss_pred             EEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          295 CFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .++   .+.=+.+.|+|.+++++.+|.|.
T Consensus       312 ~~P---e~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         312 YFP---EQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             ecC---CcccccccccCcccEEEEecCCc
Confidence            443   55667788999999988888775

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.70  E-value=1.8e-05  Score=74.68  Aligned_cols=203  Identities=13%  Similarity=0.035  Sum_probs=122.3

Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  180 (326)
                      ...+.|.++.++.        +...++.+..+|.|.+...+....  ......+...    ...|.+++|+||+.+|+..
T Consensus        73 ~~~~~ivs~~yl~--------d~~~l~~~~~~Gdi~~~~~~~~~~--~~~~E~VG~v----d~GI~a~~WSPD~Ella~v  138 (928)
T PF04762_consen   73 DPNDKIVSFQYLA--------DSESLCIALASGDIILVREDPDPD--EDEIEIVGSV----DSGILAASWSPDEELLALV  138 (928)
T ss_pred             CCCCcEEEEEecc--------CCCcEEEEECCceEEEEEccCCCC--CceeEEEEEE----cCcEEEEEECCCcCEEEEE
Confidence            3447889999887        667899999999999884332110  0011111111    4689999999999999998


Q ss_pred             cCCCeEEEEECC----Cce-----------ee--------eeecCCCCCC---------------CCcCCCCceeeeEEe
Q 020454          181 GKGVEVNVWDLD----KCE-----------KI--------WTAKPPPKNS---------------LGIFTPTWFTSAAFL  222 (326)
Q Consensus       181 ~~d~~i~iwd~~----~~~-----------~~--------~~~~~~~~~~---------------~~~~~~~~v~~~~~~  222 (326)
                      +.++++.+-+-.    ...           .+        .++++.....               ..+.....-..++|-
T Consensus       139 T~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR  218 (928)
T PF04762_consen  139 TGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR  218 (928)
T ss_pred             eCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC
Confidence            888887765421    110           00        1111100000               000011133455665


Q ss_pred             ecCCCcEEEEEeC---C---CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC---CCcEEEEECCCCeEE
Q 020454          223 SIDDHRKFVAGTN---D---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLL  293 (326)
Q Consensus       223 p~~~~~~l~~~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~~~~  293 (326)
                        .||.+||+.+.   .   ..+|+|+-. + .....-+.-.+--..++|.|.|++||+...   ...|.+|.- +|-..
T Consensus       219 --GDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrh  293 (928)
T PF04762_consen  219 --GDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRH  293 (928)
T ss_pred             --CCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEe
Confidence              48889888764   2   579999866 3 212222222333456899999999997654   345777764 44443


Q ss_pred             EEEcc---eecceEEEEEECCCCCEEEEeccC
Q 020454          294 GCFIG---KCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       294 ~~~~~---~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      ..|.-   +....|..|.|++++.+||..-.|
T Consensus       294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~  325 (928)
T PF04762_consen  294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLED  325 (928)
T ss_pred             eeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence            33332   125689999999999999986544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.70  E-value=9.3e-05  Score=69.95  Aligned_cols=242  Identities=12%  Similarity=0.123  Sum_probs=143.8

Q ss_pred             eeeeccCC---CCCceEEEEEeeeCCCCCeEEEEecCCcEEEE----eccccceeeeecccCCCCCCCCCCCeeeeeccc
Q 020454           41 VVERWGDP---HSSNCVLAASIDDSQNDPLLAVARKNGLTDIL----NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK  113 (326)
Q Consensus        41 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  113 (326)
                      ....|..+   .....++++.+.....  .++++..+|.|.++    +..+.+. .....        -+..|.++.|.+
T Consensus        62 ~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~--------vd~GI~a~~WSP  130 (928)
T PF04762_consen   62 VLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDIILVREDPDPDEDEI-EIVGS--------VDSGILAASWSP  130 (928)
T ss_pred             EEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceEEEEEccCCCCCcee-EEEEE--------EcCcEEEEEECC
Confidence            44455433   3445666666654444  49999999999999    5543332 22221        125789899877


Q ss_pred             ccccccCCCCceEEEEecCCcEEEEEcccccc--------------------------ccccccce---------EE---
Q 020454          114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------------------SAESSCST---------VK---  155 (326)
Q Consensus       114 ~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~--------------------------~~~~~~~~---------~~---  155 (326)
                              +...++..+.++++.+.+-+....                          ..|+..+.         +.   
T Consensus       131 --------D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d  202 (928)
T PF04762_consen  131 --------DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD  202 (928)
T ss_pred             --------CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence                    667899999999987775332111                          00110000         00   


Q ss_pred             EEEccCCCceEEEEEcCCCCEEEEecC---C---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          156 SWNVCASGTIAFSKVDISEKFSLFGGK---G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                      .-.+.....-..++|-.||.|+|+.+.   .   ..++||+-+ |........  ..       .--.+++|.|  .|++
T Consensus       203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~--v~-------gLe~~l~WrP--sG~l  270 (928)
T PF04762_consen  203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP--VD-------GLEGALSWRP--SGNL  270 (928)
T ss_pred             cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc--CC-------CccCCccCCC--CCCE
Confidence            000001224557889999999998765   2   469999965 443332221  11       1133668988  5668


Q ss_pred             EEEEeC---CCeEEEEeCCCCCCceeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE--EEEcceecc
Q 020454          230 FVAGTN---DHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSG  302 (326)
Q Consensus       230 l~~~~~---dg~v~iwd~~~~~~~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~--~~~~~~~~~  302 (326)
                      +|+...   ...|.+|.-...+.--..+.  .....|..++|++++..|+.--.| .|.+|-..+...-  +.+.-....
T Consensus       271 IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~  349 (928)
T PF04762_consen  271 IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSE  349 (928)
T ss_pred             EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCC
Confidence            887754   35677777553322112222  345689999999999999987766 4999998876532  223321134


Q ss_pred             eEEEEEECCCCC
Q 020454          303 SIRSIARHPTLP  314 (326)
Q Consensus       303 ~v~~l~~~p~~~  314 (326)
                      .+..+.|+|..+
T Consensus       350 ~~~~~~Wdpe~p  361 (928)
T PF04762_consen  350 SVNFVKWDPEKP  361 (928)
T ss_pred             CCCceEECCCCC
Confidence            456699999654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.68  E-value=7.7e-05  Score=62.42  Aligned_cols=176  Identities=16%  Similarity=0.102  Sum_probs=119.3

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEcc--------CCC---c---eEEEEEcCCCCEEEEecCCCeEE
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASG---T---IAFSKVDISEKFSLFGGKGVEVN  187 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~---v~~~~~~~~~~~l~sg~~d~~i~  187 (326)
                      .++.-+.-+..|.|.++|.+.+..         ...++.        ...   +   ....+.. +|++++..+. |...
T Consensus       276 sDGkrIvFq~~GdIylydP~td~l---------ekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSR-GkaF  344 (668)
T COG4946         276 SDGKRIVFQNAGDIYLYDPETDSL---------EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSR-GKAF  344 (668)
T ss_pred             CCCcEEEEecCCcEEEeCCCcCcc---------eeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEec-CcEE
Confidence            566777888899999999765432         111111        000   0   1112222 5677777665 3555


Q ss_pred             EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEeecCCceEEEEe
Q 020454          188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAE  266 (326)
Q Consensus       188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~i~~v~~  266 (326)
                      |.+...+-.+..           .++..|.-..+..  +++-++.|..|| .+-|||.+++  .+..+...-+.|.++..
T Consensus       345 i~~~~~~~~iqv-----------~~~~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~v  409 (668)
T COG4946         345 IMRPWDGYSIQV-----------GKKGGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKV  409 (668)
T ss_pred             EECCCCCeeEEc-----------CCCCceEEEEEcc--CCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEE
Confidence            554433322221           1223344444443  334688999999 9999999976  36777777789999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       267 s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +|+|++++++.....+-+.|+.+|.....=+.. .+-|+.++|||++++||-+=-+|.
T Consensus       410 s~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy  466 (668)
T COG4946         410 SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGY  466 (668)
T ss_pred             cCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcce
Confidence            999999999999999999999999876554554 788999999999999997755553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=2.3e-06  Score=72.37  Aligned_cols=150  Identities=14%  Similarity=0.193  Sum_probs=97.9

Q ss_pred             CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce--EEEEecCCcEEEEEccccccccccccc
Q 020454           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT--LLTCTTKGKASMRSIEVTKVSAESSCS  152 (326)
Q Consensus        75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~--l~~~~~~g~v~i~~~~~~~~~~~~~~~  152 (326)
                      .++.+++++.....-.+         ...++|.+..|.+        .+..  ++-|..-..+.|++++-.         
T Consensus       251 q~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~--------s~~EF~VvyGfMPAkvtifnlr~~---------  304 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPL---------LKEGPVHDVTWSP--------SGREFAVVYGFMPAKVTIFNLRGK---------  304 (566)
T ss_pred             ceEEEEEecCceEEEec---------CCCCCceEEEECC--------CCCEEEEEEecccceEEEEcCCCC---------
Confidence            46788887633322222         3348999888755        3323  444556678888886532         


Q ss_pred             eEEEEEccCCCceEEEEEcCCCCEEEEecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                        -+++.. .++=+++-|+|.|++|+.+|-+   |.|.+||+.+.+.+.....           .+-+-+.|+|  +|.+
T Consensus       305 --~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----------~~tt~~eW~P--dGe~  368 (566)
T KOG2315|consen  305 --PVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----------ANTTVFEWSP--DGEY  368 (566)
T ss_pred             --EeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----------CCceEEEEcC--CCcE
Confidence              233332 4567789999999999887765   7799999998776665443           2344668998  6778


Q ss_pred             EEEEeC------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCC
Q 020454          230 FVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD  269 (326)
Q Consensus       230 l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~  269 (326)
                      |++++.      |+.++||+...  ..++...... ....+.|-|.
T Consensus       369 flTATTaPRlrvdNg~KiwhytG--~~l~~~~f~s-EL~qv~W~P~  411 (566)
T KOG2315|consen  369 FLTATTAPRLRVDNGIKIWHYTG--SLLHEKMFKS-ELLQVEWRPF  411 (566)
T ss_pred             EEEEeccccEEecCCeEEEEecC--ceeehhhhhH-hHhheeeeec
Confidence            888764      67899999873  2344333322 4666777654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.2e-06  Score=72.27  Aligned_cols=251  Identities=12%  Similarity=0.015  Sum_probs=149.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~   93 (326)
                      --+++++.||.+|.|.-..- .|. ..+..+..+.  ..+  .+..-+..+-++.+.+. |..+++||+++-..+.-++.
T Consensus        21 ~fiiqASlDGh~KFWkKs~i-sGv-EfVKhFraHL--~~I--~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL   94 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRI-SGV-EFVKHFRAHL--GVI--LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL   94 (558)
T ss_pred             heEEeeecchhhhhcCCCCc-cce-eehhhhHHHH--HHH--HhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence            34788999999999986542 111 1221221111  111  11122233445667666 89999999986655433333


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceE--EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL--LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l--~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      .-.+      +.+.   +...+     ++.-.+  ++.-.+|.+.++|-....       ..+..++--+..+|.++.+.
T Consensus        95 ~~lP------g~a~---wv~sk-----Gd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~~~fkklH~sPV~~i~y~  153 (558)
T KOG0882|consen   95 VDLP------GFAE---WVTSK-----GDKISLIAVSLFKSGKIFVVDGFGDF-------CQDGYFKKLHFSPVKKIRYN  153 (558)
T ss_pred             ccCC------CceE---EecCC-----CCeeeeEEeecccCCCcEEECCcCCc-------CccceecccccCceEEEEee
Confidence            1111      2222   11111     011123  333467888888843322       13444555567899999999


Q ss_pred             CCCCEEEEecCCCeEEEEECCC------ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDK------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      +.+..+++....|.|.-|....      .+..+.++....-..........+++.|+|  ++..+.+-+.|..|++++.+
T Consensus       154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp--~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP--DGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc--ccCcccccCcccEEEEEEec
Confidence            9999999999999999999873      222233322211111112234567889998  56689999999999999998


Q ss_pred             CCCCceeEEe--------------------------------ecC-CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          246 AQRRPVMSFD--------------------------------FRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       246 ~~~~~~~~~~--------------------------------~~~-~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      +++ .++.+.                                -+. ..-+.+.|...|++|+-|+.=| |++.++.++++
T Consensus       232 tGk-lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  232 TGK-LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             cch-hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence            763 222221                                011 1335567888899999887764 89999998877


Q ss_pred             EEEE
Q 020454          293 LGCF  296 (326)
Q Consensus       293 ~~~~  296 (326)
                      .+.+
T Consensus       310 ~ri~  313 (558)
T KOG0882|consen  310 VRIL  313 (558)
T ss_pred             EEEe
Confidence            6654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=2.5e-05  Score=69.10  Aligned_cols=198  Identities=12%  Similarity=-0.016  Sum_probs=109.5

Q ss_pred             CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCC--CeEEEEecCCcEEEEeccccceee
Q 020454           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND--PLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      .-.++++++|-.|.|-+||....     .+...+.++..+.  ..++|.+....  .+|++-....+|.+|+..+|+...
T Consensus        77 ~~~lliAsaD~~GrIil~d~~~~-----s~~~~l~~~~~~~--qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W  149 (1062)
T KOG1912|consen   77 SSQLLIASADISGRIILVDFVLA-----SVINWLSHSNDSV--QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW  149 (1062)
T ss_pred             ccceeEEeccccCcEEEEEehhh-----hhhhhhcCCCcch--hheeeeeccCcchheeEEecCCcEEEEEEccCCceee
Confidence            34589999999999999999876     3332333333333  46666654433  367777788999999999998765


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC--C----
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--G----  163 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~----  163 (326)
                      .+..        ......++.+.+       .+...+..-+..|.+.+-+.-...    ..+...+.+.+...  .    
T Consensus       150 k~~y--------s~~iLs~f~~DP-------fd~rh~~~l~s~g~vl~~~~l~~s----ep~~pgk~~qI~sd~Sdl~~l  210 (1062)
T KOG1912|consen  150 KYDY--------SHEILSCFRVDP-------FDSRHFCVLGSKGFVLSCKDLGLS----EPDVPGKEFQITSDHSDLAHL  210 (1062)
T ss_pred             cccc--------CCcceeeeeeCC-------CCcceEEEEccCceEEEEeccCCC----CCCCCceeEEEecCccchhhh
Confidence            5543        113334344322       123445555666666655533211    11222222222111  0    


Q ss_pred             ---------------------ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          164 ---------------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       164 ---------------------~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                                           -...++|+|.-+.++-......+.++|++-..++....-..         ..+.-+.+.
T Consensus       211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier---------~~akfv~vl  281 (1062)
T KOG1912|consen  211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER---------GGAKFVDVL  281 (1062)
T ss_pred             hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc---------CCcceeEec
Confidence                                 02356677764333333466789999998766655433221         112233444


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeC
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDT  244 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~  244 (326)
                      |......|+....||.+.+|-.
T Consensus       282 P~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEe
Confidence            5433345556666666666643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=2.6e-05  Score=69.65  Aligned_cols=209  Identities=14%  Similarity=0.089  Sum_probs=131.2

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCc-----EEE
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK-----ASM  137 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~-----v~i  137 (326)
                      +++..++.|+.+|.|.+++-. -+.+..++.+      .+ +.+..+...+        ..+.|++.++|+.     +++
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~------~~-siv~~L~~~~--------~~~~L~sv~Ed~~~np~llki   96 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAY------EQ-SIVQFLYILN--------KQNFLFSVGEDEQGNPVLLKI   96 (933)
T ss_pred             CCCceEEEeeccccEEEeccc-ceeeehheec------ch-hhhhHhhccc--------CceEEEEEeecCCCCceEEEE
Confidence            344579999999999998752 2332444431      11 2244455444        3357888888765     799


Q ss_pred             EEcccccccc-ccccceEEEEEcc---CCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--ceeeeeecCCCCCCCCcC
Q 020454          138 RSIEVTKVSA-ESSCSTVKSWNVC---ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~  211 (326)
                      |+++..+... ..-.+..+++...   ...++.+++++.+-+.+|+|-.+|.|..+.-.-  .+-...       .....
T Consensus        97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-------~~~~~  169 (933)
T KOG2114|consen   97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-------DYSHR  169 (933)
T ss_pred             ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-------eeecc
Confidence            9998754221 1112223454422   245788999999999999999999998886331  111111       11112


Q ss_pred             CCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCCCCCCceeE-EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          212 TPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      ...+|+++.+..  ++.. +++++ -..|.+|.+... .|... +..+...+.|.++++....+++++.. .+.+|+...
T Consensus       170 ~~~pITgL~~~~--d~~s~lFv~T-t~~V~~y~l~gr-~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~  244 (933)
T KOG2114|consen  170 GKEPITGLALRS--DGKSVLFVAT-TEQVMLYSLSGR-TPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG  244 (933)
T ss_pred             CCCCceeeEEec--CCceeEEEEe-cceeEEEEecCC-CcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence            235799999975  3333 33433 357899998844 44444 77788889999998765545554443 799999987


Q ss_pred             CeEEEEEc-ce
Q 020454          290 GKLLGCFI-GK  299 (326)
Q Consensus       290 ~~~~~~~~-~~  299 (326)
                      ..+...|. +|
T Consensus       245 ~~~cfaf~~g~  255 (933)
T KOG2114|consen  245 RGPCFAFEVGE  255 (933)
T ss_pred             cceeeeecCCC
Confidence            77777776 54

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.62  E-value=1.9e-07  Score=81.46  Aligned_cols=151  Identities=17%  Similarity=0.168  Sum_probs=112.8

Q ss_pred             ceEEEEEcCC--CCEEEEecCCCeEEEEECCC---ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454          164 TIAFSKVDIS--EKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (326)
Q Consensus       164 ~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~  238 (326)
                      .+....|+|.  ..+-++......-.+|++..   ....+.+.+|.         ..|+.+.|+|. ....+++++.|-.
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs---------raitd~n~~~q-~pdVlatcsvdt~  138 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS---------RAITDINFNPQ-HPDVLATCSVDTY  138 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc---------cceeccccCCC-CCcceeecccccc
Confidence            3555566553  34444444555566888764   23445555554         56888899986 4559999999999


Q ss_pred             EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECC-CCCEE
Q 020454          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHP-TLPII  316 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p-~~~~l  316 (326)
                      +..||+++...|+..+..-....+.|+|+-....+.+.+..+.|++||.+.| .++..+++| ...|++++|+. ....+
T Consensus       139 vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~-vs~vn~~~fnr~~~s~~  217 (1081)
T KOG0309|consen  139 VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH-VSSVNSIDFNRFKYSEI  217 (1081)
T ss_pred             ceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccc-ceeeehHHHhhhhhhhh
Confidence            9999999888888888776677788999987666777788889999999975 567888887 99999999985 33467


Q ss_pred             EEeccCccC
Q 020454          317 ASCGFLEAA  325 (326)
Q Consensus       317 ~s~s~D~~~  325 (326)
                      .+++.||++
T Consensus       218 ~s~~~d~tv  226 (1081)
T KOG0309|consen  218 MSSSNDGTV  226 (1081)
T ss_pred             cccCCCCce
Confidence            788888875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=3.3e-08  Score=87.72  Aligned_cols=205  Identities=19%  Similarity=0.178  Sum_probs=130.7

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC--cEEEEEc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRSI  140 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g--~v~i~~~  140 (326)
                      ...+.|++|+..|.|++|++.+|.-...+.        .|..+++.+....        ++..+++.+...  ...+|++
T Consensus      1111 ~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--------cH~SavT~vePs~--------dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1111 GGTNHLAVGSHAGEIKIFNVSSGSMEESVN--------CHQSAVTLVEPSV--------DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             cCCceEEeeeccceEEEEEccCcccccccc--------ccccccccccccC--------CcceeeeeccccCchHHHhcc
Confidence            344589999999999999999888766555        5567777665433        445555444332  4577876


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      ....       +....|     ..-.++.|+..-..-+.|.......+||++++.++.++-......   .  -.-+...
T Consensus      1175 ~s~~-------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~---~--y~~n~a~ 1237 (1516)
T KOG1832|consen 1175 SSTG-------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS---S--YSNNLAH 1237 (1516)
T ss_pred             cccc-------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh---h--hhccccc
Confidence            5311       122222     234567777655444566666789999999988766533221110   0  0113557


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~  300 (326)
                      |+|.+.  +++   .||  .+||.|.. +.++.|......+.. .|+|+|..++.-+     .|||+++-++++..+.- 
T Consensus      1238 FsP~D~--LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~~G-~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L- 1302 (1516)
T KOG1832|consen 1238 FSPCDT--LIL---NDG--VLWDVRIP-EAIHRFDQFTDYGGG-GFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL- 1302 (1516)
T ss_pred             cCCCcc--eEe---eCc--eeeeeccH-HHHhhhhhheecccc-cccCCCceEEeec-----hhhhhHHHHHHhcCccc-
Confidence            888532  443   345  58999976 667777655444444 7999999999854     47999998888776632 


Q ss_pred             cceEEEEEECCCCCEEE
Q 020454          301 SGSIRSIARHPTLPIIA  317 (326)
Q Consensus       301 ~~~v~~l~~~p~~~~l~  317 (326)
                        .-..+.|+..|.++.
T Consensus      1303 --dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1303 --DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred             --cceEEEeccCccchh
Confidence              345677877776554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.3e-06  Score=77.00  Aligned_cols=162  Identities=15%  Similarity=0.129  Sum_probs=111.8

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      .+..++.|+.+|.+++++.....         -..+.  +...      ..+|.++++|+.||+|.|..+-+.+...+..
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~---------~~~~~--~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP---------KTNFD--HSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc---------ccccc--cccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            56789999999999999854321         00011  1111      4578999999999999999988776655433


Q ss_pred             CCCCCCCCcCCCCceeeeEEeec---CCCcEEEEEeCCCeEEEEeCCCC--CCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSI---DDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~---~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~g  276 (326)
                      ..          .++.+++++|.   ...+.+++|+.-| +.++.-+-.  +..+ .....+++|.++.|  .|++||=+
T Consensus       111 f~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWa  176 (846)
T KOG2066|consen  111 FK----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWA  176 (846)
T ss_pred             cC----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEe
Confidence            22          34678899885   2345899999888 888874422  1222 35566789999999  58899987


Q ss_pred             cCCCcEEEEECCCCeEEEEEcceecceEE------EEEECCCCCEE
Q 020454          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIR------SIARHPTLPII  316 (326)
Q Consensus       277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~------~l~~~p~~~~l  316 (326)
                      +.+| |++||..+++.+..++-. ...++      .+.|.++.+++
T Consensus       177 nd~G-v~vyd~~~~~~l~~i~~p-~~~~R~e~fpphl~W~~~~~LV  220 (846)
T KOG2066|consen  177 NDDG-VKVYDTPTRQRLTNIPPP-SQSVRPELFPPHLHWQDEDRLV  220 (846)
T ss_pred             cCCC-cEEEeccccceeeccCCC-CCCCCcccCCCceEecCCCeEE
Confidence            7775 899999998888776643 23332      56777665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.58  E-value=0.00013  Score=64.66  Aligned_cols=268  Identities=16%  Similarity=0.160  Sum_probs=143.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC----CceEEE--EEeeeCCCCCeEEEEecCCcEEEEecccccee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS----SNCVLA--ASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~   88 (326)
                      -++..++.+|.+.-.|..++     ++.-++.....    ...++.  ....   .+..+++++.+|.|.-+|.++|+.+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~  133 (488)
T cd00216          62 GDMYFTTSHSALFALDAATG-----KVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQV  133 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCC-----hhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEe
Confidence            56788888999999998877     33222211111    000110  0111   1146888999999999999999987


Q ss_pred             eeecccCCCCCCCCCCCeee-eecccccccccCCCCceEEEEec---------CCcEEEEEccccccccccccceEEEEE
Q 020454           89 VAISNAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTT---------KGKASMRSIEVTKVSAESSCSTVKSWN  158 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~l~~~~~---------~g~v~i~~~~~~~~~~~~~~~~~~~~~  158 (326)
                      -.+......   .....+.+ ...          .++.++.++.         +|.+..+|....+          .+|.
T Consensus       134 W~~~~~~~~---~~~~~i~ssP~v----------~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~----------~~W~  190 (488)
T cd00216         134 WKFGNNDQV---PPGYTMTGAPTI----------VKKLVIIGSSGAEFFACGVRGALRAYDVETGK----------LLWR  190 (488)
T ss_pred             eeecCCCCc---CcceEecCCCEE----------ECCEEEEeccccccccCCCCcEEEEEECCCCc----------eeeE
Confidence            776642100   00000110 011          2245555543         4555555544322          2232


Q ss_pred             ccCC---------------------Cce-EEEEEcCCCCEEEEecCCC------------------eEEEEECCCceeee
Q 020454          159 VCAS---------------------GTI-AFSKVDISEKFSLFGGKGV------------------EVNVWDLDKCEKIW  198 (326)
Q Consensus       159 ~~~~---------------------~~v-~~~~~~~~~~~l~sg~~d~------------------~i~iwd~~~~~~~~  198 (326)
                      ....                     ..+ ....+++.+..++.++.++                  .|.-+|..+++.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            2110                     111 1344555567777777654                  79999999999999


Q ss_pred             eecCCCCCCCCcCC--CCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE
Q 020454          199 TAKPPPKNSLGIFT--PTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI  273 (326)
Q Consensus       199 ~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l  273 (326)
                      +.+......+.+..  +..+..+.  . -++   ..++.++.+|.+...|.+++ +.+.+.....   ..++.+|  ..+
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~--~-~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~---~~~~~~~--~~v  341 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIK--P-KDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVE---QPMAYDP--GLV  341 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEecc--c-cCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeec---cccccCC--ceE
Confidence            87643322211111  11111111  0 122   25788889999999999988 5565554321   1234444  334


Q ss_pred             EEE------------------cCCCcEEEEECCCCeEEEEEccee-c------ceEE--EEEECCCCCEEEEeccCcc
Q 020454          274 YIG------------------NGSGDLASVDIRTGKLLGCFIGKC-S------GSIR--SIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       274 ~~g------------------~~dg~v~iwd~~~~~~~~~~~~~~-~------~~v~--~l~~~p~~~~l~s~s~D~~  324 (326)
                      +.+                  ..+|.+.-.|+.+|+.+-+..... .      .+..  .+..  .+.+|+.++.||.
T Consensus       342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~  417 (488)
T cd00216         342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY  417 (488)
T ss_pred             EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe
Confidence            332                  246889999999999887665210 0      1111  1222  4567777777775

The alignment model contains an 8-bladed beta-propeller.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.57  E-value=2.4e-06  Score=76.50  Aligned_cols=176  Identities=16%  Similarity=0.162  Sum_probs=122.7

Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~  202 (326)
                      ...++.|+....+..+|++...        ..+..++... .|.-|+.  +++++.+|...|+|.+-|.++.+.+.++..
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~--------e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a  215 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEK--------ETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDA  215 (1118)
T ss_pred             Ccceeecchhhheeeeecccce--------eeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeec
Confidence            4466777777777777766533        3344444433 2655655  568999999999999999999999999888


Q ss_pred             CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCe
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFN  272 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~  272 (326)
                      |...         +..+..    .|++|++|+.         |..|++||+|.. +.+.-+..+.++ .-+.|+|. ...
T Consensus       216 Hs~s---------iSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~  280 (1118)
T KOG1275|consen  216 HSGS---------ISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTR  280 (1118)
T ss_pred             cccc---------eeeeec----cCCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccce
Confidence            8744         333333    4558888864         567899999987 445555555444 45678887 567


Q ss_pred             EEEEcCCCcEEEEECC---CCeE-EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          273 IYIGNGSGDLASVDIR---TGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       273 l~~g~~dg~v~iwd~~---~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++.+..|...+-|..   +... .+.+. .....+..++++++++.||-+-.+|.+
T Consensus       281 ~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  281 LAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHV  336 (1118)
T ss_pred             EEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcE
Confidence            8888999999999943   3211 12222 224459999999999999999888864

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.53  E-value=0.00026  Score=61.14  Aligned_cols=73  Identities=27%  Similarity=0.353  Sum_probs=60.1

Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+..|.+.+++|.++  .++.|+.||.|.+||...+   +..+....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus       258 L~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSED--KLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccc--eEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            445688999998544  8999999999999998855   333334456678999999999999999999999999864

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.52  E-value=0.00024  Score=63.01  Aligned_cols=104  Identities=16%  Similarity=0.079  Sum_probs=68.1

Q ss_pred             EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE------------------EeCCC
Q 020454          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA------------------GTNDH  237 (326)
Q Consensus       176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~------------------~~~dg  237 (326)
                      +++.++.+|.+...|.++++.++.......            .++..|   + .+..                  ...+|
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~------------~~~~~~---~-~vyv~~~~~~~~~~~~~~~~~~~~~~G  366 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ------------PMAYDP---G-LVYLGAFHIPLGLPPQKKKRCKKPGKG  366 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeecc------------ccccCC---c-eEEEccccccccCcccccCCCCCCCce
Confidence            678889999999999999999887543100            011111   1 2222                  22467


Q ss_pred             eEEEEeCCCCCCceeEEeecC--------Cce--EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          238 QVRLYDTSAQRRPVMSFDFRE--------TPI--KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~--------~~i--~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      .+.-.|+.++ +.+.+.....        .+.  ..+..  .+..|++|+.||.|+.+|.++|+.+.+++-
T Consensus       367 ~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         367 GLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            8888888877 4455544321        111  12222  467899999999999999999999988763

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.47  E-value=2.5e-05  Score=52.52  Aligned_cols=91  Identities=11%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~  145 (326)
                      +.|++|+.|..|++|+-  .+.+.++..         ...+..|....         ...++.+-.+|+|-+|+-     
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e---------~~~v~~L~~~~---------~~~F~Y~l~NGTVGvY~~-----   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITE---------TDKVTSLCSLG---------GGRFAYALANGTVGVYDR-----   70 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEec---------ccceEEEEEcC---------CCEEEEEecCCEEEEEeC-----
Confidence            57999999999999985  355555554         26777787654         368999999999999972     


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcC---CC-CEEEEecCCCeEEE
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDI---SE-KFSLFGGKGVEVNV  188 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~sg~~d~~i~i  188 (326)
                             ..++|+.+.+..+.++.+..   +| .-|++|-.+|.|-+
T Consensus        71 -------~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   71 -------SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             -------cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                   67899999888888887653   23 47888888888743

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.46  E-value=1.4e-06  Score=76.14  Aligned_cols=171  Identities=12%  Similarity=0.088  Sum_probs=120.4

Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee-eeee
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK-IWTA  200 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~-~~~~  200 (326)
                      ..+-++......-.+|.+..      +.+..|......+...|..+.|+|+. ..+++++.|..+..||+++... ++..
T Consensus        81 ~~~wiVsts~qkaiiwnlA~------ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~  154 (1081)
T KOG0309|consen   81 KPYWIVSTSNQKAIIWNLAK------SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST  154 (1081)
T ss_pred             CceeEEecCcchhhhhhhhc------CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee
Confidence            34555555556667888653      33556777777778899999999986 7899999999999999998653 4443


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCC
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGS  279 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~d  279 (326)
                      ..-.         ..-+.|+|+.. ++ .+.+.+..+.|++||.+.+..|+..++.|...|..+.|..- ...+.+.+.|
T Consensus       155 ~~w~---------s~asqVkwnyk-~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d  223 (1081)
T KOG0309|consen  155 SSWR---------SAASQVKWNYK-DP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND  223 (1081)
T ss_pred             eccc---------ccCceeeeccc-Cc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence            3221         22446788765 44 45555667889999999887899999999888999888653 4567789999


Q ss_pred             CcEEEEECCCCe--EEEEEcceecceEEEEEECCC
Q 020454          280 GDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       280 g~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      |+|++||.....  .-+...  ...+|+.-.+-|-
T Consensus       224 ~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pf  256 (1081)
T KOG0309|consen  224 GTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPF  256 (1081)
T ss_pred             Cceeeecccccccccceecc--ccCcceecccccc
Confidence            999999987532  222222  1345555555553

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=0.00046  Score=59.74  Aligned_cols=142  Identities=11%  Similarity=0.054  Sum_probs=83.4

Q ss_pred             CCceEEEEEcCCCCEEEE-ecCC--CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCC
Q 020454          162 SGTIAFSKVDISEKFSLF-GGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH  237 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~s-g~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg  237 (326)
                      .+......|+|+|+.++. .+.+  ..|.++|+.+++... +.....         ......|+|  +|+.|+-.+ ..+
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~---------~d~~p~~SP--DG~~I~F~Sdr~g  299 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPG---------IDVNGNFVE--DDKRIVFVSDRLG  299 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCC---------ccCccEECC--CCCEEEEEECCCC
Confidence            344566789999976653 3333  468888887765332 222211         012347888  455555444 333


Q ss_pred             --eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---------CcEEEEECCCCeEEEEEcceecceEEE
Q 020454          238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSIRS  306 (326)
Q Consensus       238 --~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~  306 (326)
                        .|.++|+.++ . ...+......  ...|+|+|++|+.....         ..|.+.|+.+++.. .+...  +....
T Consensus       300 ~~~Iy~~dl~~g-~-~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~  372 (419)
T PRK04043        300 YPNIFMKKLNSG-S-VEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQF  372 (419)
T ss_pred             CceEEEEECCCC-C-eEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCC
Confidence              6777788765 2 2233222112  24899999998844432         36888898887653 33321  23335


Q ss_pred             EEECCCCCEEEEeccC
Q 020454          307 IARHPTLPIIASCGFL  322 (326)
Q Consensus       307 l~~~p~~~~l~s~s~D  322 (326)
                      ..|+|||+.|+-.+.+
T Consensus       373 p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        373 PRFSSDGGSIMFIKYL  388 (419)
T ss_pred             eEECCCCCEEEEEEcc
Confidence            8899999977766544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=0.00027  Score=62.88  Aligned_cols=241  Identities=15%  Similarity=0.118  Sum_probs=146.0

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee----------CCCCCeEEEEecCCcEEEEecccc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD----------SQNDPLLAVARKNGLTDILNPLNG   85 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~g~~dg~i~i~~~~~~   85 (326)
                      -|++.+.-..|.|-|..+-     ++++....+...  +..+.|..          .....+||++...|.|.+||...+
T Consensus        27 GLiAygshslV~VVDs~s~-----q~iqsie~h~s~--V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   27 GLIAYGSHSLVSVVDSRSL-----QLIQSIELHQSA--VTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA   99 (1062)
T ss_pred             ceEEEecCceEEEEehhhh-----hhhhccccCccc--eeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence            3666667777888887654     344344333322  22222221          123446788888899999999877


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCC-
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-  163 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-  163 (326)
                      ..+..+.        .+..++..+.|...+.     +. ..+++......+.+|+....+          ++|+..-.. 
T Consensus       100 s~~~~l~--------~~~~~~qdl~W~~~rd-----~Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~  156 (1062)
T KOG1912|consen  100 SVINWLS--------HSNDSVQDLCWVPARD-----DSRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHE  156 (1062)
T ss_pred             hhhhhhc--------CCCcchhheeeeeccC-----cchheeEEecCCcEEEEEEccCCc----------eeeccccCCc
Confidence            7666555        4446777787776543     33 578888999999999855432          567654433 


Q ss_pred             ceEEEEEcCC-CCEEEEecCCCeEEEEECCC-------ceeeeeecCCCC-----------C-----CCCcCCCCceeee
Q 020454          164 TIAFSKVDIS-EKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPK-----------N-----SLGIFTPTWFTSA  219 (326)
Q Consensus       164 ~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~-------~~~~~~~~~~~~-----------~-----~~~~~~~~~v~~~  219 (326)
                      ...|+.++|- .+.+..-+..|.+.+-+.-.       ++.......|..           .     .-....+.+...+
T Consensus       157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f  236 (1062)
T KOG1912|consen  157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF  236 (1062)
T ss_pred             ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence            4556999984 35555555666766665432       122222122111           0     0000011123345


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC--CCeEEEEcCCCcEEEEECCC
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~--~~~l~~g~~dg~v~iwd~~~  289 (326)
                      +|+|...+  ++-......+.++|+.-. .++.......+.+.-+.+-|+  ...|+++..||.+.+|--+.
T Consensus       237 af~p~~rn--~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  237 AFSPHWRN--ILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hcChhhhc--eEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            67886543  333344678999999965 677777766666666677666  45789999999999997554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.41  E-value=0.00015  Score=63.99  Aligned_cols=104  Identities=12%  Similarity=0.032  Sum_probs=69.4

Q ss_pred             CCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeCCCCCC-----------ceeEEeecCCceEEEEecCCCCeEEEEcCC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRR-----------PVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d  279 (326)
                      .+.....+.++|  +++++++ +..+.+|.++|+.+.+.           .+.+.+...++... +|.++|+...+-..|
T Consensus       319 VGKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT-aFDg~G~aytslf~d  395 (635)
T PRK02888        319 VPKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT-AFDGRGNAYTTLFLD  395 (635)
T ss_pred             CCCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceE-EECCCCCEEEeEeec
Confidence            445667889998  5666555 45689999999987532           23444455556554 899999877788899


Q ss_pred             CcEEEEECCC----------CeEEEEEcceecceEE-----EEEECCCCCEEEEe
Q 020454          280 GDLASVDIRT----------GKLLGCFIGKCSGSIR-----SIARHPTLPIIASC  319 (326)
Q Consensus       280 g~v~iwd~~~----------~~~~~~~~~~~~~~v~-----~l~~~p~~~~l~s~  319 (326)
                      ..|..||+..          ...+.++.-| ..+..     +=.-.|+|++|++.
T Consensus       396 sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~-y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        396 SQIVKWNIEAAIRAYKGEKVDPIVQKLDVH-YQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             ceeEEEehHHHHHHhccccCCcceecccCC-CccceeeecCCCcCCCCCCEEEEc
Confidence            9999999886          3445544433 22221     11235788888775

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.37  E-value=6.4e-07  Score=49.04  Aligned_cols=35  Identities=37%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             CeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       290 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++++..+++| .++|++|+|+|++.+|+++|.|+.+
T Consensus         1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i   35 (39)
T PF00400_consen    1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTI   35 (39)
T ss_dssp             EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEE
T ss_pred             CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEE
Confidence            4678899998 9999999999999999999999975

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.36  E-value=0.00033  Score=60.48  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             cceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454          151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (326)
Q Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l  230 (326)
                      -+.+.+..+..+..+.+.+++|+...|+.|+.||.|.+||...+..... +.          .--++.++|+|  +|..+
T Consensus       248 lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka----------~~~P~~iaWHp--~gai~  314 (545)
T PF11768_consen  248 LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA----------EFIPTLIAWHP--DGAIF  314 (545)
T ss_pred             eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee----------cccceEEEEcC--CCcEE
Confidence            3355566666788999999999999999999999999999876644332 11          12356889999  56699


Q ss_pred             EEEeCCCeEEEEeCCC
Q 020454          231 VAGTNDHQVRLYDTSA  246 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~  246 (326)
                      ++|+..|.+.+||+.-
T Consensus       315 ~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  315 VVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEcCCceEEEEEeec
Confidence            9999999999999763

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.00018  Score=64.04  Aligned_cols=174  Identities=13%  Similarity=0.148  Sum_probs=109.5

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +..|+.|..+|.|++++.. +.....+..         ...    .  .        .+.++++|+.||++.|..+....
T Consensus        49 ~~~~~~GtH~g~v~~~~~~-~~~~~~~~~---------s~~----~--~--------~Gey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ-GNPKTNFDH---------SSS----I--L--------EGEYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             cceeeeccccceEEEEecC-Ccccccccc---------ccc----c--c--------CCceEEEecCCCcEEEeeccCCc
Confidence            3469999999999999884 333111111         011    1  1        56799999999999998865433


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCC-----CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDIS-----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                              ....++.  +.++.+++++|+     .+.+++||.-| +.++.-+=-......       ..-...+.|.++
T Consensus       105 --------~~~~~df--~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-------~l~~~eG~I~~i  166 (846)
T KOG2066|consen  105 --------EITQYDF--KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-------VLSEGEGPIHSI  166 (846)
T ss_pred             --------cceeEec--CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-------eeecCccceEEE
Confidence                    2333333  468999999997     37888999988 777653211100000       011123679999


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC------ceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------PIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      .|.    |+++|=++.+| |++||+.+. +.+..++....      .-..+.|.++ ..|+.|-.| +|+|..++
T Consensus       167 ~W~----g~lIAWand~G-v~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  167 KWR----GNLIAWANDDG-VKVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             Eec----CcEEEEecCCC-cEEEecccc-ceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence            995    44777777666 799998865 33444433222      2245667644 466666555 88888887

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=0.00018  Score=58.98  Aligned_cols=242  Identities=12%  Similarity=0.008  Sum_probs=130.0

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-eeeecccC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAG   95 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~   95 (326)
                      +..++.+..|+|.|+++.     ..+..+..+   ..+..+||+-+. ..++..|..+|.|.|||+...+- +.++..  
T Consensus       209 l~~asl~nkiki~dlet~-----~~vssy~a~---~~~wSC~wDlde-~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a--  277 (463)
T KOG1645|consen  209 LGLASLGNKIKIMDLETS-----CVVSSYIAY---NQIWSCCWDLDE-RHVIYAGLQNGMVLVYDMRQPEGPLMELVA--  277 (463)
T ss_pred             eeeeccCceEEEEecccc-----eeeeheecc---CCceeeeeccCC-cceeEEeccCceEEEEEccCCCchHhhhhh--
Confidence            677788889999999987     555555433   556677887554 66899999999999999974431 122211  


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  175 (326)
                          +....+|..++....+   ...+.+.++++..-+ +..|.+.      ++.+....+..+...+.+.++..++..+
T Consensus       278 ----~~t~~pv~~i~~~~~n---~~f~~gglLv~~lt~-l~f~ei~------~s~~~~p~vlele~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  278 ----NVTINPVHKIAPVQPN---KIFTSGGLLVFALTV-LQFYEIV------FSAECLPCVLELEPPGICISMQYHGVSN  343 (463)
T ss_pred             ----hhccCcceeecccCcc---ccccccceEEeeehh-hhhhhhh------ccccCCCcccccCCCcceeeeeecCccc
Confidence                1223566655544422   111233444444333 3456543      2333344455555567777888887554


Q ss_pred             -EEEEecCCC------eEEE-EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          176 -FSLFGGKGV------EVNV-WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       176 -~l~sg~~d~------~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                       .|++.-.+.      .|.. -|...+.++...+.......  ..+-.-+..-+.+.++...+.++...+.+.+||+.+.
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~--~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSK--QTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCc--ccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence             444432221      1111 12223333333221110000  0000001112333333333445566779999999987


Q ss_pred             CCceeEEeecCCceEEEEecC-C-CCeEEEEcCCCcEEEEECC
Q 020454          248 RRPVMSFDFRETPIKAVAEEP-D-SFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       248 ~~~~~~~~~~~~~i~~v~~s~-~-~~~l~~g~~dg~v~iwd~~  288 (326)
                       ..++.+... .+|.+++... + +.+|++-. |..++||..+
T Consensus       422 -evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  422 -EVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             -heeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence             557777655 7788877643 2 44666544 4478887654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=6.6e-06  Score=68.02  Aligned_cols=189  Identities=13%  Similarity=0.028  Sum_probs=125.8

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeee
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~  200 (326)
                      ..+.+++++.||.++.|.-..-.     ...-++.+ ..+...|.+++.+.++.++.+.+. |..++++|+++-..+.-.
T Consensus        19 ka~fiiqASlDGh~KFWkKs~is-----GvEfVKhF-raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi   92 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRIS-----GVEFVKHF-RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI   92 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCcc-----ceeehhhh-HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence            34689999999999999733211     11122222 234557888899999999999777 999999999875544332


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcC
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~  278 (326)
                      +....       |..+ ....+|.+.-..+++ .-.++.+.++|-+... +.......|..+|..+.+.+-+..+++...
T Consensus        93 KL~~l-------Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   93 KLVDL-------PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             ccccC-------CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            22110       1100 111222211113333 3468899999987553 334455578999999999999999999999


Q ss_pred             CCcEEEEECCC------CeE---------EEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          279 SGDLASVDIRT------GKL---------LGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       279 dg~v~iwd~~~------~~~---------~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .|.|.-|....      .++         ++.+.. +.....++.|+|++..+.+-+.|..+
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkV  225 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKV  225 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEE
Confidence            99999998872      111         222332 25668899999999999998888754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.25  E-value=0.00023  Score=57.46  Aligned_cols=151  Identities=17%  Similarity=0.148  Sum_probs=105.3

Q ss_pred             ceEEEEEcCC-CCEEEEecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-----eCC
Q 020454          164 TIAFSKVDIS-EKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-----TND  236 (326)
Q Consensus       164 ~v~~~~~~~~-~~~l~sg~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-----~~d  236 (326)
                      ....++.+|. ...++.+-.-|+ ..+||.++++....+.......       .--...|+|  +|++|++.     +..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~--dG~~LytTEnd~~~g~   76 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSP--DGRLLYTTENDYETGR   76 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcC--CCCEEEEeccccCCCc
Confidence            4456778884 567777776665 7789999998776654422111       112346777  67788776     346


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE------------------cCCCcEEEEECCCCeEEEEEcc
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG------------------NGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g------------------~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      |.|-|||.....+.+.++..+.-.-..+.+.|||+.|+++                  +.+-++.+.|..+|+++.+..-
T Consensus        77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            7999999994445677787766666778899999877765                  3334677788889998877432


Q ss_pred             ---eecceEEEEEECCCCCEEEEeccCc
Q 020454          299 ---KCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       299 ---~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                         ++..+|+.|++.+++..++..=..|
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg  184 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAMQYQG  184 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEEecCC
Confidence               2378999999999998776654444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.0015  Score=51.89  Aligned_cols=210  Identities=10%  Similarity=0.081  Sum_probs=110.8

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .-...+.++.+.++ .+.++++....+.|..++. +|+++..+..       .+.+-.-++++..        + +.++.
T Consensus        19 g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~-~G~vlr~i~l-------~g~~D~EgI~y~g--------~-~~~vl   80 (248)
T PF06977_consen   19 GILDELSGLTYNPD-TGTLFAVQDEPGEIYELSL-DGKVLRRIPL-------DGFGDYEGITYLG--------N-GRYVL   80 (248)
T ss_dssp             T--S-EEEEEEETT-TTEEEEEETTTTEEEEEET-T--EEEEEE--------SS-SSEEEEEE-S--------T-TEEEE
T ss_pred             CccCCccccEEcCC-CCeEEEEECCCCEEEEEcC-CCCEEEEEeC-------CCCCCceeEEEEC--------C-CEEEE
Confidence            33344667777643 2347778888899988887 6888887775       2234566677644        3 34444


Q ss_pred             Ee-cCCcEEEEEccccccccccccceEEEEEc----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC---ceeeeee
Q 020454          129 CT-TKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---CEKIWTA  200 (326)
Q Consensus       129 ~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---~~~~~~~  200 (326)
                      .. .++.+.+.++........  ...+..+.+    ..+..+..++|++.++.|+.+-+.....||.+..   ...+...
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~--~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLD--RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EETTTTEEEEEEE----TT----EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEcCCCcEEEEEEeccccccc--hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence            44 488898888854332111  111222322    2345699999999887776766666677777653   1111111


Q ss_pred             --cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC---------CceEEEEecCC
Q 020454          201 --KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAEEPD  269 (326)
Q Consensus       201 --~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~i~~v~~s~~  269 (326)
                        .........+   ..+++++++|. .+++++....+..|..+|.. + +++..+....         .+.-.|+|.++
T Consensus       159 ~~~~~~~~~~~~---~d~S~l~~~p~-t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~  232 (248)
T PF06977_consen  159 DDQDLDDDKLFV---RDLSGLSYDPR-TGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPD  232 (248)
T ss_dssp             E-HHHH-HT--S---S---EEEEETT-TTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred             ccccccccccee---ccccceEEcCC-CCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCcccCcccccCCccEEEECCC
Confidence              1111011111   34678999986 56688888889999999954 4 4555554332         25788999999


Q ss_pred             CCeEEEEcCCCcEEEE
Q 020454          270 SFNIYIGNGSGDLASV  285 (326)
Q Consensus       270 ~~~l~~g~~dg~v~iw  285 (326)
                      |+..++ ++-+.+++|
T Consensus       233 G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  233 GNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             --EEEE-ETTTEEEEE
T ss_pred             CCEEEE-cCCceEEEe
Confidence            865555 566566655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=8e-06  Score=70.40  Aligned_cols=95  Identities=13%  Similarity=0.138  Sum_probs=79.2

Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceE-EEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~-~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                      +..+.-+.|+|.-+  ++|.++.+|.|.++.+. . +.+.++..+...++ +++|.|||+.|++|-.||+|++.|+.++.
T Consensus        20 ~~~i~~~ewnP~~d--LiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD--LIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccc--hhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            45677889999655  99999999999999998 4 45888887777777 99999999999999999999999999998


Q ss_pred             EEEEEcceecceEEEEEECC
Q 020454          292 LLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~p  311 (326)
                      .+..+..-....|.++-|.|
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            88773321367888888864

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.21  E-value=0.0027  Score=54.93  Aligned_cols=209  Identities=17%  Similarity=0.101  Sum_probs=107.8

Q ss_pred             cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEE
Q 020454           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK  155 (326)
Q Consensus        76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~  155 (326)
                      .|+||+. .|+.+..+..       .. +.+.++.|..         +..|+....||.++++++......+  -...+.
T Consensus        62 ~I~iys~-sG~ll~~i~w-------~~-~~iv~~~wt~---------~e~LvvV~~dG~v~vy~~~G~~~fs--l~~~i~  121 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPW-------DS-GRIVGMGWTD---------DEELVVVQSDGTVRVYDLFGEFQFS--LGEEIE  121 (410)
T ss_pred             EEEEECC-CCCEeEEEEE-------CC-CCEEEEEECC---------CCeEEEEEcCCEEEEEeCCCceeec--hhhhcc
Confidence            5999998 6777777654       22 6888899744         5678999999999999975322000  000111


Q ss_pred             EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEE-ECCCceeeeeecCCCCCCCCcCCCCceee-eEEeecCCCcEEEEE
Q 020454          156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVW-DLDKCEKIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAG  233 (326)
Q Consensus       156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~~l~~~  233 (326)
                      ...+. ...+....+..+|-.++++  ++.+.+. +.............+.............. ..+..  +....+..
T Consensus       122 ~~~v~-e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~--~~~~~i~~  196 (410)
T PF04841_consen  122 EEKVL-ECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS--DRVVEILL  196 (410)
T ss_pred             ccCcc-cccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeec--CcceEEEE
Confidence            00000 1112223333345444442  3333332 22211111111111111100000011111 12222  23344444


Q ss_pred             eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       234 ~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      ..++.+.+.+-... ..   +. ..+++..++.||++++||.-..+|.+.+.+..-.+.+..+..........+.|+-+.
T Consensus       197 ~~g~~i~~i~~~~~-~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  197 ANGETIYIIDENSF-KQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             ecCCEEEEEEcccc-cc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            55566665553322 11   21 246899999999999999989999999998766666665553224566677776544


Q ss_pred             C
Q 020454          314 P  314 (326)
Q Consensus       314 ~  314 (326)
                      .
T Consensus       272 a  272 (410)
T PF04841_consen  272 A  272 (410)
T ss_pred             c
Confidence            3

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.19  E-value=0.0014  Score=54.84  Aligned_cols=224  Identities=15%  Similarity=0.174  Sum_probs=120.6

Q ss_pred             CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec----------CCcEEEEEccccc
Q 020454           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----------KGKASMRSIEVTK  144 (326)
Q Consensus        75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----------~g~v~i~~~~~~~  144 (326)
                      ..|+++|..+.+.+..+..       .....+.++..+.-.. .......++++|+.          .|.+.++++... 
T Consensus         2 s~i~l~d~~~~~~~~~~~l-------~~~E~~~s~~~~~l~~-~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~-   72 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFEL-------EPNEHVTSLCSVKLKG-DSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES-   72 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEE-------ETTEEEEEEEEEEETT-S---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-
T ss_pred             cEEEEEeCCCCeEEEEEEC-------CCCceEEEEEEEEEcC-ccccccCEEEEEecccccccccccCcEEEEEEEEcc-
Confidence            3577888777666665554       1223344444332110 00001356666653          288999998763 


Q ss_pred             cccccccceE-EEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          145 VSAESSCSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       145 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                         ......+ .+......++|+++..- ++.++++  .++.|.+|++...+ ........        .+..++++...
T Consensus        73 ---~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~--~g~~l~v~~l~~~~~l~~~~~~~--------~~~~i~sl~~~  138 (321)
T PF03178_consen   73 ---PENNFKLKLIHSTEVKGPVTAICSF-NGRLVVA--VGNKLYVYDLDNSKTLLKKAFYD--------SPFYITSLSVF  138 (321)
T ss_dssp             --------EEEEEEEEEESS-EEEEEEE-TTEEEEE--ETTEEEEEEEETTSSEEEEEEE---------BSSSEEEEEEE
T ss_pred             ---cccceEEEEEEEEeecCcceEhhhh-CCEEEEe--ecCEEEEEEccCcccchhhheec--------ceEEEEEEecc
Confidence               1111122 22333346789988877 4444433  34799999998777 33332211        11246666554


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-------C--e
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------G--K  291 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-------~--~  291 (326)
                          ++++++|...+.+.++..+.....+..+  ......++++.+-++++.+++++.+|.+.++....       +  +
T Consensus       139 ----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~  214 (321)
T PF03178_consen  139 ----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK  214 (321)
T ss_dssp             ----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred             ----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence                2388999888888877544321212222  23445688888876767999999999999998763       2  3


Q ss_pred             EEEEEcceecceEEEE---EECCC--C------CEEEEeccCccC
Q 020454          292 LLGCFIGKCSGSIRSI---ARHPT--L------PIIASCGFLEAA  325 (326)
Q Consensus       292 ~~~~~~~~~~~~v~~l---~~~p~--~------~~l~s~s~D~~~  325 (326)
                      +.....-|....|+++   .+.|.  +      +.++-++.+|.+
T Consensus       215 L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I  259 (321)
T PF03178_consen  215 LERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI  259 (321)
T ss_dssp             EEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred             ceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence            3333333446678888   55552  2      136667777753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.17  E-value=0.0023  Score=51.82  Aligned_cols=219  Identities=17%  Similarity=0.110  Sum_probs=118.3

Q ss_pred             eEEEEecCCc-EEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-----ecCCcEEEEEc
Q 020454           67 LLAVARKNGL-TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-----TTKGKASMRSI  140 (326)
Q Consensus        67 ~l~~g~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-----~~~g~v~i~~~  140 (326)
                      .++.+..-|+ ..+||..+++....+..       .....+.+-..|..       ++..|++.     ...|.|-+||.
T Consensus        19 avafaRRPG~~~~v~D~~~g~~~~~~~a-------~~gRHFyGHg~fs~-------dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen   19 AVAFARRPGTFALVFDCRTGQLLQRLWA-------PPGRHFYGHGVFSP-------DGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             EEEEEeCCCcEEEEEEcCCCceeeEEcC-------CCCCEEecCEEEcC-------CCCEEEEeccccCCCcEEEEEEEC
Confidence            4666777665 67889998888776653       22233444444441       33444443     23477888886


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec------------------CCCeEEEEECCCceeeeeecC
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG------------------KGVEVNVWDLDKCEKIWTAKP  202 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~------------------~d~~i~iwd~~~~~~~~~~~~  202 (326)
                      ...-       ..+..|... .-.-..+.+.|+++.|+++.                  .+-.+..-|..+++.+.+..-
T Consensus        85 ~~~~-------~ri~E~~s~-GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   85 ARGY-------RRIGEFPSH-GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             cCCc-------EEEeEecCC-CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            6211       133344422 22344566788886666542                  112233333333443333211


Q ss_pred             CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-------eEEEEeCCCCCCceeEEe-------ecCCceEEEEecC
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFD-------FRETPIKAVAEEP  268 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~-------~~~~~i~~v~~s~  268 (326)
                      ....     +...+..+++.+  ++..++..-..|       -|-+++...   ++..+.       .-...+-+|++++
T Consensus       157 p~~~-----~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~  226 (305)
T PF07433_consen  157 PPDL-----HQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADR  226 (305)
T ss_pred             Cccc-----cccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeC
Confidence            0000     112455666654  342333222222       122222221   111111       2235789999999


Q ss_pred             CCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          269 DSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       269 ~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ++.++++.+ ..|.+.+||..+++.+....-.   .+..++-.+++ +++|.|.
T Consensus       227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CCCEEEEECCCCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCCC
Confidence            999887655 5678999999999998877633   67778777766 7776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.00027  Score=63.46  Aligned_cols=182  Identities=13%  Similarity=0.167  Sum_probs=111.0

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC-----eEEEEECCCce-
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCE-  195 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~-  195 (326)
                      ..+.++.++.+|.|.+++-...         .++-|......-|..+....+.++|++-+.|.     .++|||++..+ 
T Consensus        34 ~~~~vvigt~~G~V~~Ln~s~~---------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILNSSFQ---------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             CCceEEEeeccccEEEecccce---------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            5678999999999988873321         22444444333344554444457887776664     48999997532 


Q ss_pred             -----eee--eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC---CCCCCceeEEeecCCceEEEE
Q 020454          196 -----KIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT---SAQRRPVMSFDFRETPIKAVA  265 (326)
Q Consensus       196 -----~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~---~~~~~~~~~~~~~~~~i~~v~  265 (326)
                           ++.  ....+...    ..+.+++.++.+.  +-+.+|.|-.+|.|..+.-   |.......-......+|+.++
T Consensus       105 n~sP~c~~~~ri~~~~np----~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNP----TNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             CCCcceeeeeeeeccCCC----CCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence                 121  11111111    1234567777775  3458899999999999962   211111111223467999999


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeE-EEEEcceecceEEEEEECCCCC-EEEEe
Q 020454          266 EEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLP-IIASC  319 (326)
Q Consensus       266 ~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~-~l~s~  319 (326)
                      +..++..++-......|.+|.+....+ +..+..| ..+++|-.+++... +++++
T Consensus       179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~  233 (933)
T KOG2114|consen  179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG  233 (933)
T ss_pred             EecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec
Confidence            998887733223334799999984443 3335655 88999999997665 44444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.16  E-value=9e-07  Score=76.18  Aligned_cols=192  Identities=14%  Similarity=0.088  Sum_probs=116.2

Q ss_pred             CCCeEEEEecCCcEEEEecccccee-eeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEe----cCCcEEE
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCT----TKGKASM  137 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~----~~g~v~i  137 (326)
                      +..++++|..+|.|.+-........ .++.       .++..+..++++.+        -+ +.|+++-    .+-.+.|
T Consensus        69 d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwne--------LDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   69 DRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNE--------LDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             chhhhhhccccCceEEeecCCcccccceec-------cccccccccccccc--------ccHHHHHhhhhhhcccCCccc
Confidence            3568999999999999887644332 1111       13445667777644        22 3344442    3456789


Q ss_pred             EEccccccccccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCC
Q 020454          138 RSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPT  214 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~  214 (326)
                      ||+...-..      +...|...  ......++.|..+.+++.+|.....+.++|++... ....+..           .
T Consensus       134 wdi~s~ltv------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-----------k  196 (783)
T KOG1008|consen  134 WDINSLLTV------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-----------K  196 (783)
T ss_pred             eecccccCC------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-----------h
Confidence            998765211      11111111  12344577777778899999999999999998322 1111111           2


Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEe-CCCCCCceeEEeecCC----ceEEEEecCCCC-eEEEE-cCCCcEEEEEC
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYD-TSAQRRPVMSFDFRET----PIKAVAEEPDSF-NIYIG-NGSGDLASVDI  287 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd-~~~~~~~~~~~~~~~~----~i~~v~~s~~~~-~l~~g-~~dg~v~iwd~  287 (326)
                      .+.++...|- .++++++-. ||.|-+|| .+..+.++..+...+.    .+..++|+|... .+++. -..++|+++|+
T Consensus       197 ~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  197 YVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             hcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            3445566663 233666665 99999999 6655556555543333    489999999733 33443 45578999998


Q ss_pred             CC
Q 020454          288 RT  289 (326)
Q Consensus       288 ~~  289 (326)
                      ..
T Consensus       275 ~~  276 (783)
T KOG1008|consen  275 CV  276 (783)
T ss_pred             cc
Confidence            73

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0012  Score=57.14  Aligned_cols=141  Identities=12%  Similarity=0.037  Sum_probs=87.8

Q ss_pred             ceEEEEEcCCCCE-EEEecC---CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCC--
Q 020454          164 TIAFSKVDISEKF-SLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTND--  236 (326)
Q Consensus       164 ~v~~~~~~~~~~~-l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~d--  236 (326)
                      ....-.|+|+++. ++..+.   +..|.++|+.+++....... .         .......|+|  +++.+ ++.+.+  
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~---------g~~~~~~~SP--DG~~la~~~~~~g~  256 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-Q---------GMLVVSDVSK--DGSKLLLTMAPKGQ  256 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-C---------CcEEeeEECC--CCCEEEEEEccCCC
Confidence            6778999999973 554333   35699999988765443221 1         2234567888  45444 444433  


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCC--cEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      ..|.++|+..+ . ...+..+........|+|||+.|+-.+ ..|  .|++.|+.+++........ .   ....|+|++
T Consensus       257 ~~Iy~~dl~~g-~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG  330 (419)
T PRK04043        257 PDIYLYDTNTK-T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYK  330 (419)
T ss_pred             cEEEEEECCCC-c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCC
Confidence            57888888765 3 344444433334558999998887444 334  5888888887764332211 1   124899999


Q ss_pred             CEEEEeccC
Q 020454          314 PIIASCGFL  322 (326)
Q Consensus       314 ~~l~s~s~D  322 (326)
                      +.|+-.+..
T Consensus       331 ~~Ia~~~~~  339 (419)
T PRK04043        331 NYIVYSSRE  339 (419)
T ss_pred             CEEEEEEcC
Confidence            988777654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.10  E-value=0.0026  Score=49.59  Aligned_cols=187  Identities=16%  Similarity=0.149  Sum_probs=111.0

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~  145 (326)
                      .+++.|+..+.+.-.|..+|+.+.+...       .  .+|.+-+..         -+++++.+..+|.+++.+.+... 
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il-------g--~RiE~sa~v---------vgdfVV~GCy~g~lYfl~~~tGs-   84 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-------G--VRIECSAIV---------VGDFVVLGCYSGGLYFLCVKTGS-   84 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh-------C--ceeeeeeEE---------ECCEEEEEEccCcEEEEEecchh-
Confidence            4789999999999999999987665432       1  233322221         24679999999999999876532 


Q ss_pred             ccccccceEEEEEccCCCceE-EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          146 SAESSCSTVKSWNVCASGTIA-FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                               ++|+....+.|- .....+++.++..|+.|++.+..|.++...+++.+-.....         .+-+..|.
T Consensus        85 ---------~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f---------~sP~i~~g  146 (354)
T KOG4649|consen   85 ---------QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF---------VSPVIAPG  146 (354)
T ss_pred             ---------heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee---------ccceecCC
Confidence                     234432223332 23456789999999999999999999999998865433211         11233332


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--cCCceEEEEecC--CCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEP--DSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~--~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                       ++ .|..+...|.|.--.....  +..++-.  ...+|.+   +|  -+..+..+.-||.+.-+| ..|+.+.++.
T Consensus       147 -~~-sly~a~t~G~vlavt~~~~--~~~~~w~~~~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  147 -DG-SLYAAITAGAVLAVTKNPY--SSTEFWAATRFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             -Cc-eEEEEeccceEEEEccCCC--CcceehhhhcCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence             33 3444444555544443332  1112111  1223322   11  145666667777777777 5566665554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.08  E-value=0.0043  Score=51.98  Aligned_cols=183  Identities=17%  Similarity=0.243  Sum_probs=107.0

Q ss_pred             CCeEEEEec---------C-CcEEEEecccc-----ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           65 DPLLAVARK---------N-GLTDILNPLNG-----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        65 ~~~l~~g~~---------d-g~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      .+++++|..         . |.|.+|++.+.     ++ ..+...      ...++|.++..+.          ++ +.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l-~~i~~~------~~~g~V~ai~~~~----------~~-lv~  103 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL-KLIHST------EVKGPVTAICSFN----------GR-LVV  103 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE-EEEEEE------EESS-EEEEEEET----------TE-EEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEE-EEEEEE------eecCcceEhhhhC----------CE-EEE
Confidence            567888765         2 99999999774     32 222221      2347899888754          45 555


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--ceeeeeecCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNS  207 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~~~~~~~~~~~~~~  207 (326)
                      +.++.+.+|++....     .-.....++.  ...+.++...  ++++++|..-..+.++..+.  .+.....+..    
T Consensus       104 ~~g~~l~v~~l~~~~-----~l~~~~~~~~--~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~----  170 (321)
T PF03178_consen  104 AVGNKLYVYDLDNSK-----TLLKKAFYDS--PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDY----  170 (321)
T ss_dssp             EETTEEEEEEEETTS-----SEEEEEEE-B--SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEES----
T ss_pred             eecCEEEEEEccCcc-----cchhhheecc--eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecC----
Confidence            556899999988654     0112233332  3356666665  56999998888888775443  2222222211    


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC------CC-c---eeEEeecCCceEEE---EecCC--CC-
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ------RR-P---VMSFDFRETPIKAV---AEEPD--SF-  271 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~------~~-~---~~~~~~~~~~i~~v---~~s~~--~~-  271 (326)
                          .+.+++++.|.++.  +.++.+..+|.+.++.....      .. .   ...+. ....|+++   ++.|.  +. 
T Consensus       171 ----~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~  243 (321)
T PF03178_consen  171 ----QPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSE  243 (321)
T ss_dssp             ----S-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-
T ss_pred             ----CCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCc
Confidence                24679999998743  38999999999999876521      11 1   12222 23567777   55552  22 


Q ss_pred             -----eEEEEcCCCcEEEE
Q 020454          272 -----NIYIGNGSGDLASV  285 (326)
Q Consensus       272 -----~l~~g~~dg~v~iw  285 (326)
                           .++.++.+|.|.+.
T Consensus       244 ~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  244 SPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTEEEEEEEEETTS-EEEE
T ss_pred             ccccceEEEEecCCEEEEE
Confidence                 47788899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4.9e-05  Score=62.17  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=65.2

Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      +...|.+++|+|..+| ++..++.+.+|+|.|+++. ..+.++..+ ..+.+++|+-| .++|++|..+|.|.|||++..
T Consensus       192 ~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             cchhhhhhccCccccc-eeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            4457899999998766 8899999999999999986 556777677 78899999977 567889999999999999975


Q ss_pred             e
Q 020454          291 K  291 (326)
Q Consensus       291 ~  291 (326)
                      +
T Consensus       269 ~  269 (463)
T KOG1645|consen  269 E  269 (463)
T ss_pred             C
Confidence            3

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.04  E-value=0.0015  Score=55.91  Aligned_cols=253  Identities=10%  Similarity=0.014  Sum_probs=120.6

Q ss_pred             EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee------e-------------------ecccCCCC----------
Q 020454           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV------A-------------------ISNAGDSG----------   98 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~------~-------------------~~~~~~~~----------   98 (326)
                      +..++++..+.  -|++|..+|.|.||.....+.-.      .                   +..-.++.          
T Consensus         4 v~~vs~a~~t~--Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    4 VTHVSFAPETL--ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             EEEEEEETTTT--EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             EEEEEecCCCc--eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            44566665544  49999999999999775332211      0                   00000000          


Q ss_pred             CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-----C
Q 020454           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----S  173 (326)
Q Consensus        99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~  173 (326)
                      .+...++|.++..         ++-+++++++++|.+.+.|++.....-...-.. ..........+.++.|..     +
T Consensus        82 ~~~~~g~vtal~~---------S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D  151 (395)
T PF08596_consen   82 LDAKQGPVTALKN---------SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGD  151 (395)
T ss_dssp             E---S-SEEEEEE----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTS
T ss_pred             eeccCCcEeEEec---------CCCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCC
Confidence            0233567776664         256799999999999999986533110000000 000011123466666652     3


Q ss_pred             C---CEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecC-------------------CCcEE
Q 020454          174 E---KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------------DHRKF  230 (326)
Q Consensus       174 ~---~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~~l  230 (326)
                      +   -.+++|...|.+.+|.+.- ..-.+........   ......|..+...-.+                   .-.-+
T Consensus       152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~---~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~  228 (395)
T PF08596_consen  152 GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT---TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY  228 (395)
T ss_dssp             SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE-----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred             cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc---ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence            3   4778899999999998752 1111111000000   0001112222211000                   00123


Q ss_pred             EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEec-----CCCCeEEEEcCCCcEEEEECCCCeEEEEEccee---cc
Q 020454          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE-----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC---SG  302 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s-----~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~---~~  302 (326)
                      +....+..+|++.+.+.+. .++..........+++-     ..+..|++-..+|.+++|.+...+.+..++-+.   ..
T Consensus       229 vVvvSe~~irv~~~~~~k~-~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~  307 (395)
T PF08596_consen  229 VVVVSESDIRVFKPPKSKG-AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR  307 (395)
T ss_dssp             EEEE-SSEEEEE-TT---E-EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred             EEEEcccceEEEeCCCCcc-cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence            4444578899999887633 33322111223333442     356778888999999999999988887766420   23


Q ss_pred             eEEEEEECCCCCEEEEeccC
Q 020454          303 SIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s~D  322 (326)
                      .+....++++|.+++-.|..
T Consensus       308 ~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SSS
T ss_pred             cccccEECCCCCEEEEeCcc
Confidence            45567778888877766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.04  E-value=0.0034  Score=49.91  Aligned_cols=191  Identities=13%  Similarity=0.148  Sum_probs=102.2

Q ss_pred             CCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC
Q 020454          104 DGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK  182 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~  182 (326)
                      ..+.++++.+        +.+.|++ ..+.+.|..++.+  .       ..++.+.+........+++..++.++++.-.
T Consensus        22 ~e~SGLTy~p--------d~~tLfaV~d~~~~i~els~~--G-------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er   84 (248)
T PF06977_consen   22 DELSGLTYNP--------DTGTLFAVQDEPGEIYELSLD--G-------KVLRRIPLDGFGDYEGITYLGNGRYVLSEER   84 (248)
T ss_dssp             S-EEEEEEET--------TTTEEEEEETTTTEEEEEETT-----------EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred             CCccccEEcC--------CCCeEEEEECCCCEEEEEcCC--C-------CEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence            4589999765        4455544 4455665555532  1       2566777766678889999888888887767


Q ss_pred             CCeEEEEECCCcee------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC--CCCceeEE
Q 020454          183 GVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSF  254 (326)
Q Consensus       183 d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~  254 (326)
                      ++.+.++++.....      ...+.-...    ......+-+++|.|.. + .|+++-...-..+|.++.  ....+...
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~D~~~-~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAYDPKT-N-RLFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S-------SS--EEEEEETTT-T-EEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             CCcEEEEEEeccccccchhhceEEecccc----cCCCcceEEEEEcCCC-C-EEEEEeCCCChhhEEEccccCccceeec
Confidence            89999999843211      111110000    0011346789999853 3 555555555566666553  11111111


Q ss_pred             e--------ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEcceec---------ceEEEEEECCCCCEE
Q 020454          255 D--------FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS---------GSIRSIARHPTLPII  316 (326)
Q Consensus       255 ~--------~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l  316 (326)
                      .        .....+.+++++|. +++++.+..+..|..+| .+|+++..+.-. .         ..-..|+|.++|.+.
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~-~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLD-RGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-S-TTGGG-SS---SEEEEEE-TT--EE
T ss_pred             cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeC-CcccCcccccCCccEEEECCCCCEE
Confidence            1        22346788999997 55666778888999999 678877655421 1         246789999999766


Q ss_pred             EEe
Q 020454          317 ASC  319 (326)
Q Consensus       317 ~s~  319 (326)
                      ++.
T Consensus       237 Ivs  239 (248)
T PF06977_consen  237 IVS  239 (248)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.03  E-value=0.00064  Score=63.50  Aligned_cols=196  Identities=14%  Similarity=0.093  Sum_probs=119.1

Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  180 (326)
                      .+++.|.++.++.        ..+.++.+...|.|.+-|.......        .+=  .-...|.+++|+|++.+++..
T Consensus        66 ~gd~~i~s~~fl~--------d~~~i~v~~~~G~iilvd~et~~~e--------ivg--~vd~GI~aaswS~Dee~l~li  127 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLA--------DTNSICVITALGDIILVDPETLELE--------IVG--NVDNGISAASWSPDEELLALI  127 (1265)
T ss_pred             CCCcceEEEEEec--------ccceEEEEecCCcEEEEccccccee--------eee--eccCceEEEeecCCCcEEEEE
Confidence            4457888898877        6678999999999998875543211        111  114679999999999999888


Q ss_pred             cCCCeEEEEEC----CCceee-------------------eeecCCCC-----CC-------CCcCCCCceeeeEEeecC
Q 020454          181 GKGVEVNVWDL----DKCEKI-------------------WTAKPPPK-----NS-------LGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       181 ~~d~~i~iwd~----~~~~~~-------------------~~~~~~~~-----~~-------~~~~~~~~v~~~~~~p~~  225 (326)
                      +..+++.+-+-    -..+++                   ..+++...     +.       ........-++|.|-  .
T Consensus       128 T~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR--g  205 (1265)
T KOG1920|consen  128 TGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR--G  205 (1265)
T ss_pred             eCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc--c
Confidence            88777755322    112221                   00110000     00       000011122346675  4


Q ss_pred             CCcEEEE-----EeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE---cCCCcEEEEECCC---CeEEE
Q 020454          226 DHRKFVA-----GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG---NGSGDLASVDIRT---GKLLG  294 (326)
Q Consensus       226 ~~~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g---~~dg~v~iwd~~~---~~~~~  294 (326)
                      +|.++|+     ....+.|++||.. + ..-..-....+.-.+++|-|.|..+++-   ..|+.|.+|.-+.   |+..-
T Consensus       206 Dg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l  283 (1265)
T KOG1920|consen  206 DGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL  283 (1265)
T ss_pred             CCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc
Confidence            7778887     3333799999977 3 2111222233445678999999998843   3456799998542   23333


Q ss_pred             EEcceecceEEEEEECCCCCEEEEe
Q 020454          295 CFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       295 ~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      .++.. ..+|..|+|+.++.+||.-
T Consensus       284 ~~p~d-e~~ve~L~Wns~sdiLAv~  307 (1265)
T KOG1920|consen  284 PFPLD-EKEVEELAWNSNSDILAVV  307 (1265)
T ss_pred             CCccc-ccchheeeecCCCCceeee
Confidence            34443 5559999999999998873

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.01  E-value=0.0034  Score=51.53  Aligned_cols=207  Identities=16%  Similarity=0.173  Sum_probs=115.0

Q ss_pred             CCCCeEEEEec--CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454           63 QNDPLLAVARK--NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (326)
Q Consensus        63 ~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~  140 (326)
                      .+++++++.-.  --+|.|.|+..++++.++..          ....  ..++.       ....+.+-+.||.+.-..+
T Consensus       104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----------PGC~--~iyP~-------~~~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen  104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----------PGCW--LIYPS-------GNRGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----------TSEE--EEEEE-------ETTEEEEEETTSCEEEEEE
T ss_pred             cCCcEEEEEccCCCCeEEEEECCCCceeeeecC----------CCEE--EEEec-------CCCceEEEecCCceEEEEE
Confidence            34455555433  35688888888888877765          1122  22332       2346889999999999998


Q ss_pred             cccccccccccceEEEEEccCCCceE-EEEEcCCCCEEEEecCCCeEEEEECCCceeeee--ecCCC----CCCCCcCCC
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIA-FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPP----KNSLGIFTP  213 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~~~----~~~~~~~~~  213 (326)
                      +......   ...-.+++... .++. .-.+...+..++--+.+|.|+--|+......+.  ..-..    ...|   .|
T Consensus       165 d~~Gk~~---~~~t~~F~~~~-dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W---rP  237 (342)
T PF06433_consen  165 DADGKEA---QKSTKVFDPDD-DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW---RP  237 (342)
T ss_dssp             TSTSSEE---EEEEEESSTTT-S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE---EE
T ss_pred             CCCCCEe---EeeccccCCCC-cccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc---CC
Confidence            8655433   11223454433 2333 333444444444457899999988876543222  11100    0000   12


Q ss_pred             CceeeeEEeecCCCcEEEEEe--C-----CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEE-cCCCcE
Q 020454          214 TWFTSAAFLSIDDHRKFVAGT--N-----DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIG-NGSGDL  282 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~--~-----dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g-~~dg~v  282 (326)
                      ..-.-+++++. .+++++...  .     |+  .|-+||+.+. +.+..+... .++.+|+.+.+.+ +|++. ..++.+
T Consensus       238 GG~Q~~A~~~~-~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l  314 (342)
T PF06433_consen  238 GGWQLIAYHAA-SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTL  314 (342)
T ss_dssp             -SSS-EEEETT-TTEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEE
T ss_pred             cceeeeeeccc-cCeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeE
Confidence            22334566653 332332221  1     12  4667788877 456677653 5688999998865 55544 467899


Q ss_pred             EEEECCCCeEEEEEcc
Q 020454          283 ASVDIRTGKLLGCFIG  298 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~  298 (326)
                      .+||..+|+++.++..
T Consensus       315 ~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  315 DVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEETTT--EEEEE--
T ss_pred             EEEeCcCCcEEeehhc
Confidence            9999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.99  E-value=0.011  Score=52.97  Aligned_cols=60  Identities=17%  Similarity=0.110  Sum_probs=38.7

Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      |.|.-+|+.++ +.+.+.+.......+. +.-.+..++.++.+|.++.+|.++|+.+.+++-
T Consensus       441 g~l~AiD~~tG-k~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITG-KIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCC-ceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            45677777776 3344443221111121 112456777889999999999999999988774

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.96  E-value=0.0096  Score=56.11  Aligned_cols=209  Identities=12%  Similarity=0.081  Sum_probs=122.2

Q ss_pred             ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      ..++++.+....+  -++++..+|.|.+-|.++... .....        -++.|.++.+.+        +...++..+.
T Consensus        69 ~~i~s~~fl~d~~--~i~v~~~~G~iilvd~et~~~-eivg~--------vd~GI~aaswS~--------Dee~l~liT~  129 (1265)
T KOG1920|consen   69 DEIVSVQFLADTN--SICVITALGDIILVDPETLEL-EIVGN--------VDNGISAASWSP--------DEELLALITG  129 (1265)
T ss_pred             cceEEEEEecccc--eEEEEecCCcEEEEcccccce-eeeee--------ccCceEEEeecC--------CCcEEEEEeC
Confidence            4666666654444  489999999999998876553 22221        125677777765        5667888888


Q ss_pred             CCcEEEEEccccc----c-----------ccccccceEEEEEcc--------------------CCCceEEEEEcCCCCE
Q 020454          132 KGKASMRSIEVTK----V-----------SAESSCSTVKSWNVC--------------------ASGTIAFSKVDISEKF  176 (326)
Q Consensus       132 ~g~v~i~~~~~~~----~-----------~~~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~  176 (326)
                      .+++.+.+.+...    .           +...+...-.-++..                    ....=..+.|--+|.+
T Consensus       130 ~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~  209 (1265)
T KOG1920|consen  130 RQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY  209 (1265)
T ss_pred             CcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE
Confidence            8887766542110    0           111111100011100                    0011235888889999


Q ss_pred             EEE-----ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---eCCCeEEEEeCCCCC
Q 020454          177 SLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYDTSAQR  248 (326)
Q Consensus       177 l~s-----g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---~~dg~v~iwd~~~~~  248 (326)
                      +|+     ......|++||-+ +..-...  .+..       .--.+++|-|  .|.++++.   +.|+.|.+|.-...+
T Consensus       210 fAVs~~~~~~~~RkirV~drE-g~Lns~s--e~~~-------~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  210 FAVSFVESETGTRKIRVYDRE-GALNSTS--EPVE-------GLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             EEEEEEeccCCceeEEEeccc-chhhccc--Cccc-------ccccceeecC--CCCeEeeeeecCCCCcEEEEecCCcc
Confidence            988     3333789999976 3221111  1111       1123668888  45577765   346689999865332


Q ss_pred             C--ceeEEeecCCceEEEEecCCCCeEEE---EcCCCcEEEEECCCCe
Q 020454          249 R--PVMSFDFRETPIKAVAEEPDSFNIYI---GNGSGDLASVDIRTGK  291 (326)
Q Consensus       249 ~--~~~~~~~~~~~i~~v~~s~~~~~l~~---g~~dg~v~iwd~~~~~  291 (326)
                      .  ....+......+..++|+.++..|++   ......|++|-+.+..
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            2  12223334445999999999999886   4444559999987753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.96  E-value=0.0012  Score=51.44  Aligned_cols=111  Identities=17%  Similarity=0.119  Sum_probs=82.5

Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      ..+++.|+..+.+..-|..+++..+...-.          ..+.+-+..-   ++.++.|+..|.+++.+.+++. ....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----------~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs-~~w~   88 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------VRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGS-QIWN   88 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC----------ceeeeeeEEE---CCEEEEEEccCcEEEEEecchh-heee
Confidence            478888999999999999999988874321          1122323332   3389999999999999999884 4666


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      +...+.--......+++..|.+|++|+..+..|.++..++++.+.
T Consensus        89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             eeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            655433222335678899999999999999999999988887763

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.95  E-value=0.0088  Score=53.30  Aligned_cols=86  Identities=10%  Similarity=-0.087  Sum_probs=57.1

Q ss_pred             CCeEEEEeCCC----CCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeE------------EEEEcc
Q 020454          236 DHQVRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL------------LGCFIG  298 (326)
Q Consensus       236 dg~v~iwd~~~----~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~------------~~~~~~  298 (326)
                      ++.|.+.|.++    ....+..+... .....+.++|||+++++++ .+++|.|+|+.+.+.            ..+..-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            46788999886    32444445444 4457889999999988554 589999999987542            333332


Q ss_pred             eecceEEEEEECCCCCEEEEeccCcc
Q 020454          299 KCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       299 ~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                        ...-...+|.++|....|--.|.+
T Consensus       374 --GlGPLHTaFDg~G~aytslf~dsq  397 (635)
T PRK02888        374 --GLGPLHTAFDGRGNAYTTLFLDSQ  397 (635)
T ss_pred             --CCCcceEEECCCCCEEEeEeecce
Confidence              223346778888876666655543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.95  E-value=0.0012  Score=60.65  Aligned_cols=139  Identities=19%  Similarity=0.188  Sum_probs=90.4

Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-----CCCEEEEecCCCeEEEEECCCce-eeeeecCCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPP  204 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~  204 (326)
                      ....++-.|++...        .|..|++....+|..+.-..     +......|-.++.|..||.|-.. .+.....+ 
T Consensus       502 ~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k-  572 (794)
T PF08553_consen  502 NPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK-  572 (794)
T ss_pred             CCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-
Confidence            45677777776544        78999987766666665432     12234467788899999998532 11111111 


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEE
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~i  284 (326)
                          ........++++-.  .+| +||+|+.+|.||+||-- +.+.-..+.+-..+|..|..+.||++|++.+.. .+.+
T Consensus       573 ----~Y~~~~~Fs~~aTt--~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlL  643 (794)
T PF08553_consen  573 ----QYSSKNNFSCFATT--EDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLL  643 (794)
T ss_pred             ----ccccCCCceEEEec--CCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEE
Confidence                11122234444443  356 89999999999999943 334334455667899999999999999876655 6777


Q ss_pred             EEC
Q 020454          285 VDI  287 (326)
Q Consensus       285 wd~  287 (326)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.89  E-value=0.00046  Score=63.25  Aligned_cols=135  Identities=13%  Similarity=0.112  Sum_probs=89.1

Q ss_pred             CCEEEEe-cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-----CCcEEEEEeCCCeEEEEeCCCC
Q 020454          174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-----DHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       174 ~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      .++|+.- ...+.|+-.|++.|+.+...+.+....        |.  .+.|..     .+...+.|-.+..+..||+|-.
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~--------v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~  562 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP--------VV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS  562 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc--------ee--EecccccccccCCCceEEEECCCceEEeccCCC
Confidence            3554443 355789999999999988766654321        22  222211     1224567777889999999954


Q ss_pred             CCceeEEe----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          248 RRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       248 ~~~~~~~~----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ...+..-.    ......+|++-+.+| +||+|+.+|.|++||--..+....+++- ..+|.+|+.+.||++|+..+
T Consensus       563 ~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc  637 (794)
T PF08553_consen  563 GNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC  637 (794)
T ss_pred             CCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee
Confidence            22222111    233467787777666 8999999999999994332333346664 88999999999999876553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=0.0011  Score=57.52  Aligned_cols=132  Identities=11%  Similarity=0.057  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      ....+.++|+++++++ ..||.-.||.....+.....+              -....|.+  .+ .+|+-...++|.|+.
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~--------------g~~~vw~~--~n-~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGS--------------GLSFVWSS--RN-RYAVLESSSTIKIYK   95 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE---------------SEEEE-T--SS-EEEEE-TTS-EEEEE
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCc--------------eeEEEEec--Cc-cEEEEECCCeEEEEE
Confidence            4678999999999988 456777788744333332211              23567776  23 688888789999973


Q ss_pred             -CCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          244 -TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       244 -~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                       ....  ....++.. ..+..+-.   |..|...+.+ .|.+||..+++.+.++...   +|..+.|++++.+++-.+.|
T Consensus        96 n~~~~--~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~  165 (443)
T PF04053_consen   96 NFKNE--VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD  165 (443)
T ss_dssp             TTEE---TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-
T ss_pred             cCccc--cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC
Confidence             4322  23344332 23444322   8877776555 8999999999999999843   59999999999999988876


Q ss_pred             c
Q 020454          323 E  323 (326)
Q Consensus       323 ~  323 (326)
                      .
T Consensus       166 ~  166 (443)
T PF04053_consen  166 S  166 (443)
T ss_dssp             S
T ss_pred             e
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.00023  Score=62.57  Aligned_cols=136  Identities=13%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      .+.--.++..+++++.|+.-|.+.+|+-..++.... ++....       .-+.....++  +..++|.|+..|.|.++-
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~~-------~~~~~~~vs~--~e~lvAagt~~g~V~v~q  104 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGAT-------GITCVRSVSS--VEYLVAAGTASGRVSVFQ  104 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccCcc-------ceEEEEEecc--hhHhhhhhcCCceEEeeh
Confidence            344344556789999999999999999776654332 221111       2234445555  344888999999999998


Q ss_pred             CCCCCCceeEEe-----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----eEEEEEcceecceEEEEEEC
Q 020454          244 TSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       244 ~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~~  310 (326)
                      +.....+-..+.     .|...|++++|++++..+++|+..|.|..-.+.+.    ...+.+-.. .+.|-.|+..
T Consensus       105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~  179 (726)
T KOG3621|consen  105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYL  179 (726)
T ss_pred             hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeecc
Confidence            775322221111     35678999999999999999999999999888762    111222222 5567777664

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.85  E-value=0.019  Score=51.40  Aligned_cols=212  Identities=12%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCce--EEEEEeee---CCCCCeEEEEecCCcEEEEeccccceee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC--VLAASIDD---SQNDPLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      -++..++.+|.|.-.|..++     ++.-++........  ..+.....   .-.+..+++++.|+.|.-+|..+|+.+-
T Consensus        70 g~vyv~s~~g~v~AlDa~TG-----k~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTG-----KELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CEEEEECCCCcEEEEECCCC-----ceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            56778888899888898877     44222221111000  00000000   0012358889999999999999999877


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccc----ccccc--------
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVS----AESSC--------  151 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~----~~~~~--------  151 (326)
                      ........    ....+.+.-..         .++.++++..      +|.|.-+|.+..+..    +....        
T Consensus       145 ~~~~~~~~----~~~~~tssP~v---------~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~  211 (527)
T TIGR03075       145 SKKNGDYK----AGYTITAAPLV---------VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKAD  211 (527)
T ss_pred             eccccccc----ccccccCCcEE---------ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccc
Confidence            65531100    00011110000         1235555543      566666665443210    00000        


Q ss_pred             ----ce--EE-----EEEccCCCceE-EEEEcCCCCEEEEecCC-----C-----------eEEEEECCCceeeeeecCC
Q 020454          152 ----ST--VK-----SWNVCASGTIA-FSKVDISEKFSLFGGKG-----V-----------EVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       152 ----~~--~~-----~~~~~~~~~v~-~~~~~~~~~~l~sg~~d-----~-----------~i~iwd~~~~~~~~~~~~~  203 (326)
                          +.  ..     .|.. ....+. .++++++.+++..+..+     +           .|.-.|+++++..+.++..
T Consensus       212 ~~~~~~~~~~tw~~~~~~~-gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~  290 (527)
T TIGR03075       212 KPVGGEPGAKTWPGDAWKT-GGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT  290 (527)
T ss_pred             cccccccccCCCCCCcccc-CCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence                00  00     1111 111222 44677766666655411     2           6778899999999998887


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCc---EEEEEeCCCeEEEEeCCCC
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~---~l~~~~~dg~v~iwd~~~~  247 (326)
                      ..+.+++-.+....-+.. + .+++   .++.+..+|.+++.|.+++
T Consensus       291 ~~D~wD~d~~~~p~l~d~-~-~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       291 PHDEWDYDGVNEMILFDL-K-KDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             CCCCccccCCCCcEEEEe-c-cCCcEEEEEEEeCCCceEEEEECCCC
Confidence            777666533222111111 1 2443   7789999999999999887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>smart00320 WD40 WD40 repeats

Probab=97.71  E-value=0.00011  Score=39.13  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=32.8

Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                      ++..+..+...|.++.|++++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566777888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.001  Score=61.91  Aligned_cols=155  Identities=15%  Similarity=0.113  Sum_probs=100.1

Q ss_pred             ccCCCceEEEEEcCCCCEEEE--ecCCCeEEEEECCCceee-----eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454          159 VCASGTIAFSKVDISEKFSLF--GGKGVEVNVWDLDKCEKI-----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (326)
Q Consensus       159 ~~~~~~v~~~~~~~~~~~l~s--g~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~  231 (326)
                      +...-++..+...++++..++  .+++-.|..||+++-...     .-++++.   .....+....++.|.|...- ..+
T Consensus        97 v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~---ts~ek~vf~~~~~wnP~vp~-n~a  172 (1405)
T KOG3630|consen   97 VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSA---TSFEKPVFQLKNVWNPLVPL-NSA  172 (1405)
T ss_pred             eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccccc---chhccccccccccccCCccc-hhh
Confidence            333456777777788754433  344447889999853211     1111111   11223345667788886433 577


Q ss_pred             EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce---ecceEEEEE
Q 020454          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIA  308 (326)
Q Consensus       232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~  308 (326)
                      ++..|+.|++.-+....+.+.++.. ....++++|+|.|+.+++|...|++..|... ++....+++.   ....|.+|.
T Consensus       173 v~l~dlsl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~  250 (1405)
T KOG3630|consen  173 VDLSDLSLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVT  250 (1405)
T ss_pred             hhccccchhhhhhhhhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEE
Confidence            8888999999887755444455433 3568999999999999999999999999764 4433333321   136799999


Q ss_pred             ECCCCCEEEEe
Q 020454          309 RHPTLPIIASC  319 (326)
Q Consensus       309 ~~p~~~~l~s~  319 (326)
                      |-....+++.-
T Consensus       251 Wl~t~eflvvy  261 (1405)
T KOG3630|consen  251 WLSTQEFLVVY  261 (1405)
T ss_pred             EecceeEEEEe
Confidence            98776676653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.00042  Score=60.96  Aligned_cols=99  Identities=8%  Similarity=0.002  Sum_probs=76.1

Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE---EEEEc---ce
Q 020454          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFI---GK  299 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~---~~~~~---~~  299 (326)
                      ..++++.|+.-|.+++|+-..+........+..+.+...+.+++..++|+|+..|.|.++-+..+.+   .+.-+   .|
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~  123 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH  123 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence            3459999999999999998765333334444667778888999999999999999999998876322   22212   23


Q ss_pred             ecceEEEEEECCCCCEEEEeccCccC
Q 020454          300 CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       300 ~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                       ...|++++|++++..+++|-.-|.+
T Consensus       124 -~~rVTal~Ws~~~~k~ysGD~~Gkv  148 (726)
T KOG3621|consen  124 -KCRVTALEWSKNGMKLYSGDSQGKV  148 (726)
T ss_pred             -CceEEEEEecccccEEeecCCCceE
Confidence             7799999999999999999877764

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.56  E-value=1.5e-05  Score=68.88  Aligned_cols=182  Identities=15%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEec----CCCeEEEEECCCc--ee
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGG----KGVEVNVWDLDKC--EK  196 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~----~d~~i~iwd~~~~--~~  196 (326)
                      ..+.+|..+|.|.+-.+......       -..+-......+++++|++-. +.||.|-    .|..+.|||+.+.  .+
T Consensus        71 cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP  143 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP  143 (783)
T ss_pred             hhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence            56778888999988876643211       111222335578899998854 6777653    3456999999876  22


Q ss_pred             eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecC-CCCeEEE
Q 020454          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYI  275 (326)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~  275 (326)
                      ........ .     ......+++|.  .+.+++.+|...+.+.++|+|..  ...........+..+..+| .+.|+++
T Consensus       144 ke~~~fs~-~-----~l~gqns~cwl--rd~klvlaGm~sr~~~ifdlRqs--~~~~~svnTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  144 KESPLFSS-S-----TLDGQNSVCWL--RDTKLVLAGMTSRSVHIFDLRQS--LDSVSSVNTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccccccc-c-----cccCccccccc--cCcchhhcccccchhhhhhhhhh--hhhhhhhhhhhcccceecCCCCCceec
Confidence            11111111 0     11234467776  35668899999999999999943  1222223344566677788 5677776


Q ss_pred             EcCCCcEEEEE-CCCC-eEEEEEcce---ecceEEEEEECCCC-CEEEEeccCc
Q 020454          276 GNGSGDLASVD-IRTG-KLLGCFIGK---CSGSIRSIARHPTL-PIIASCGFLE  323 (326)
Q Consensus       276 g~~dg~v~iwd-~~~~-~~~~~~~~~---~~~~v~~l~~~p~~-~~l~s~s~D~  323 (326)
                      - .||.|.+|| .+.- .++..+...   ....+..++|+|.. ..+++++.|.
T Consensus       214 ~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS  266 (783)
T KOG1008|consen  214 N-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS  266 (783)
T ss_pred             c-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence            4 499999999 4332 222222211   12358899999954 3666666553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.00025  Score=63.79  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=79.5

Q ss_pred             EEEEcCCCCEEEEecC----CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          167 FSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      -.+|||...++|+++.    .|.+.||- .+|++-.          .+..|..+++++|+|.  .-.|+.|-.-|.+.+|
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr----------~Vt~P~hatSLCWHpe--~~vLa~gwe~g~~~v~   86 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR----------DVTYPVHATSLCWHPE--EFVLAQGWEMGVSDVQ   86 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc----------ccccceehhhhccChH--HHHHhhccccceeEEE
Confidence            3568888888877653    35666663 3333211          2334556788999995  3378889899999999


Q ss_pred             eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ..... +.-.....|..+|..+.||++|..++++..-|.|.+|...
T Consensus        87 ~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   87 KTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            98754 2223334688999999999999999999999999999876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.55  E-value=8.1e-05  Score=67.11  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--eE
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QV  239 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--~v  239 (326)
                      ....+|++|+...++|+.|+-.|.|++|++.+|........|..         .|+.+.  |..+|..+++.+.-.  -.
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S---------avT~ve--Ps~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS---------AVTLVE--PSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc---------cccccc--ccCCcceeeeeccccCchH
Confidence            45688999999999999999999999999999988777666653         344443  444666665554322  57


Q ss_pred             EEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-ce--ecceEEEEEECCCCCEE
Q 020454          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GK--CSGSIRSIARHPTLPII  316 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~--~~~~v~~l~~~p~~~~l  316 (326)
                      .+|++.+-..+.++|...    .++.|+....+-+.|+......+||++++.++.++- +-  ..-.-+...|+|+..+|
T Consensus      1170 aLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HHhccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            799988655677777543    567888776666677777789999999988776632 11  01223567788887766


Q ss_pred             E
Q 020454          317 A  317 (326)
Q Consensus       317 ~  317 (326)
                      +
T Consensus      1246 l 1246 (1516)
T KOG1832|consen 1246 L 1246 (1516)
T ss_pred             e
Confidence            5

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.52  E-value=0.012  Score=39.83  Aligned_cols=100  Identities=12%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             eeeeEEeecC--CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454          216 FTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (326)
Q Consensus       216 v~~~~~~p~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~  293 (326)
                      |+++++..-+  ..+.|++|+.|..||+|+-.   ..+.++... ..+++++-... ..++-+-.+|+|-+|+-.  ..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence            5666766532  22589999999999999855   346666544 66788776655 578888999999999763  344


Q ss_pred             EEEcceecceEEEEEECC-CC---CEEEEeccCcc
Q 020454          294 GCFIGKCSGSIRSIARHP-TL---PIIASCGFLEA  324 (326)
Q Consensus       294 ~~~~~~~~~~v~~l~~~p-~~---~~l~s~s~D~~  324 (326)
                      .+.+.  ...+.++++.. ++   +-|++|=.+|.
T Consensus        75 WRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGk  107 (111)
T PF14783_consen   75 WRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGK  107 (111)
T ss_pred             eeecc--CCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence            44443  33466665543 32   35777766654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.49  E-value=0.035  Score=44.51  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             CceEEEEEcCCCCEEE-EecCCCeEEEEECCCcee-e---eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454          163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEK-I---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg  237 (326)
                      ...+.++|+|+++.|+ +-+..+.|..|++..... +   ..+......      ....-.+++..  ++++.++....+
T Consensus       134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~g~pDG~~vD~--~G~l~va~~~~~  205 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG------PGYPDGLAVDS--DGNLWVADWGGG  205 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS------SCEEEEEEEBT--TS-EEEEEETTT
T ss_pred             ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC------CcCCCcceEcC--CCCEEEEEcCCC
Confidence            3567999999998664 667788899999863221 1   111111100      02245677765  676777777899


Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEe-cCCCCeEEEEc
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAE-EPDSFNIYIGN  277 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~g~  277 (326)
                      .|.++|.. + +.+..+......+++++| -++.+.|++.+
T Consensus       206 ~I~~~~p~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  206 RIVVFDPD-G-KLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEETT-S-CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEECCC-c-cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            99999998 5 557777776668999999 46666666433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.48  E-value=0.00028  Score=53.69  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEE-EecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec-ceEE
Q 020454          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV-AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-GSIR  305 (326)
Q Consensus       228 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v-~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~-~~v~  305 (326)
                      ..++.|+.+|.|++|...........+......|.++ .--.++.+..++..||.|+.|++.-.+.+.....| . .++.
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h-~~~~~e  149 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH-NFESGE  149 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc-cCCCcc
Confidence            4789999999999999873322222222233333332 22234567889999999999999988888766665 5 6777


Q ss_pred             EEEECCCCCEEEEe--ccCcc
Q 020454          306 SIARHPTLPIIASC--GFLEA  324 (326)
Q Consensus       306 ~l~~~p~~~~l~s~--s~D~~  324 (326)
                      .+..+-.+++|+.+  |.|..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~  170 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRV  170 (238)
T ss_pred             eeEEecCCceEEeeccccchh
Confidence            77777777777777  66643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.46  E-value=0.043  Score=44.82  Aligned_cols=256  Identities=11%  Similarity=0.035  Sum_probs=127.5

Q ss_pred             CCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        10 ~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      +.-..-+|+.|+++| +.+++.... .+..++..    ...   +..+......+   ++..-.|+.+.++++..-....
T Consensus         3 ~~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~----~~~---I~ql~vl~~~~---~llvLsd~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    3 ADSWGDRLLVGTEDG-LYVYDLSDP-SKPTRILK----LSS---ITQLSVLPELN---LLLVLSDGQLYVYDLDSLEPVS   70 (275)
T ss_pred             cccCCCEEEEEECCC-EEEEEecCC-ccceeEee----cce---EEEEEEecccC---EEEEEcCCccEEEEchhhcccc
Confidence            334458899999999 788888322 12222211    111   33344333333   4444566999999986443322


Q ss_pred             eecccCCCCC---CCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccccccc-ceEEEEEccCCCce
Q 020454           90 AISNAGDSGA---QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTI  165 (326)
Q Consensus        90 ~~~~~~~~~~---~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~v  165 (326)
                      .......+..   ...-....+...+...   ........+.+.....+.+|.+.....    .- ...+.+.+  ...+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~---~~~~~~~~L~va~kk~i~i~~~~~~~~----~f~~~~ke~~l--p~~~  141 (275)
T PF00780_consen   71 TSAPLAFPKSRSLPTKLPETKGVSFFAVN---GGHEGSRRLCVAVKKKILIYEWNDPRN----SFSKLLKEISL--PDPP  141 (275)
T ss_pred             ccccccccccccccccccccCCeeEEeec---cccccceEEEEEECCEEEEEEEECCcc----cccceeEEEEc--CCCc
Confidence            1100000000   0000111122222200   001334556666666899888765310    01 23444444  5788


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC--CCC-cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN--SLG-IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~-~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      ..+.|.  ++.++.|..+ ...+.|+.++............  ... ......+..+.. +  ++.+|+ +. |..-.+.
T Consensus       142 ~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~e~Ll-~~-~~~g~fv  213 (275)
T PF00780_consen  142 SSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-S--DNEFLL-CY-DNIGVFV  213 (275)
T ss_pred             EEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-C--CceEEE-Ee-cceEEEE
Confidence            889888  5777776644 5788899866543322111110  000 001112222222 1  333444 33 4444455


Q ss_pred             eCCCCCCc-eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454          243 DTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (326)
Q Consensus       243 d~~~~~~~-~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~  299 (326)
                      |.... .. ...+.... ...++++  ...||++-+.+ .|.||++.++++++.+...
T Consensus       214 ~~~G~-~~r~~~i~W~~-~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  214 NKNGE-PSRKSTIQWSS-APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             cCCCC-cCcccEEEcCC-chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence            55422 21 13455543 4556666  34578776665 5999999999999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.41  E-value=0.067  Score=45.95  Aligned_cols=173  Identities=15%  Similarity=0.115  Sum_probs=91.0

Q ss_pred             CCceEEEEecCCcEEEEEcccccccc-----cc----------------------------ccc--eEEEEEccCCCceE
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSA-----ES----------------------------SCS--TVKSWNVCASGTIA  166 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~-----~~----------------------------~~~--~~~~~~~~~~~~v~  166 (326)
                      ...-++++...|.|.+|.+..+....     ..                            ..+  +..+.+.. .++|.
T Consensus        12 ~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~-~g~vt   90 (395)
T PF08596_consen   12 ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK-QGPVT   90 (395)
T ss_dssp             TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE----S-SEE
T ss_pred             CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc-CCcEe
Confidence            45678889999999888776543211     00                            001  12233333 56799


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee---cCCC---cEEEEEeCCCeEE
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDH---RKFVAGTNDHQVR  240 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~---~~l~~~~~dg~v~  240 (326)
                      +++.+ +=.++|+|..+|.+.|.|+|....++...-.. .........+++++.|..   .+|+   -.+++|+..|.+.
T Consensus        91 al~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~  168 (395)
T PF08596_consen   91 ALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVL  168 (395)
T ss_dssp             EEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEE
T ss_pred             EEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEE
Confidence            99987 66899999999999999999988887632211 111122335788888863   2333   3788999999999


Q ss_pred             EEeCCC--CCCceeEE----eecCCceEEEE-ecCC--------------------CCeEEEEcCCCcEEEEECCCCeEE
Q 020454          241 LYDTSA--QRRPVMSF----DFRETPIKAVA-EEPD--------------------SFNIYIGNGSGDLASVDIRTGKLL  293 (326)
Q Consensus       241 iwd~~~--~~~~~~~~----~~~~~~i~~v~-~s~~--------------------~~~l~~g~~dg~v~iwd~~~~~~~  293 (326)
                      +|.+..  .......+    ..+.++|..+. ++.+                    -+.+++...+..++++...+.+..
T Consensus       169 ~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~  248 (395)
T PF08596_consen  169 TFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGA  248 (395)
T ss_dssp             EEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EE
T ss_pred             EEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccc
Confidence            998652  11111111    13445555444 3211                    112344445668999999887776


Q ss_pred             EEEc
Q 020454          294 GCFI  297 (326)
Q Consensus       294 ~~~~  297 (326)
                      ++..
T Consensus       249 ~K~~  252 (395)
T PF08596_consen  249 HKSF  252 (395)
T ss_dssp             EEE-
T ss_pred             ceee
Confidence            5544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.41  E-value=0.014  Score=53.13  Aligned_cols=244  Identities=15%  Similarity=0.095  Sum_probs=128.9

Q ss_pred             EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454           56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (326)
Q Consensus        56 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v  135 (326)
                      +.+.+|.+..-+|+.|-.-|.+.+|...+.+. .+...       .|..+|..+.|.+        +++.++++..-|.+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~-------th~a~i~~l~wS~--------~G~~l~t~d~~g~v  125 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVE-------THPAPIQGLDWSH--------DGTVLMTLDNPGSV  125 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCcee-eeecc-------CCCCCceeEEecC--------CCCeEEEcCCCcee
Confidence            44455666666899999999999999876654 33333       5567899899876        67899999999999


Q ss_pred             EEEEcccccccccc------ccceEEEE--EccCCC----------------------------ceEEE--EEcCCCCEE
Q 020454          136 SMRSIEVTKVSAES------SCSTVKSW--NVCASG----------------------------TIAFS--KVDISEKFS  177 (326)
Q Consensus       136 ~i~~~~~~~~~~~~------~~~~~~~~--~~~~~~----------------------------~v~~~--~~~~~~~~l  177 (326)
                      .+|.++..+...+.      ....+..|  ++....                            .-.++  .-.|+|..+
T Consensus       126 ~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F  205 (1416)
T KOG3617|consen  126 HLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEF  205 (1416)
T ss_pred             EEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEE
Confidence            99998843322111      11122222  221110                            00011  123567788


Q ss_pred             EEecCCCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeee--------EEeecCCCc------EEE---EEeCCCeE
Q 020454          178 LFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSA--------AFLSIDDHR------KFV---AGTNDHQV  239 (326)
Q Consensus       178 ~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~p~~~~~------~l~---~~~~dg~v  239 (326)
                      +.++.+|+|+--|-... ..+.++...- ..+-......|..+        -|.+. .|.      .=+   .|+..|.|
T Consensus       206 ~~~~~~GtVyyvdq~g~~~~V~k~dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~-~G~~ee~~~vk~sgk~GgrqGgi  283 (1416)
T KOG3617|consen  206 LFAGKSGTVYYVDQNGRQRTVHKLDSEV-QMLFMGYCEAISIIIEFLRDCLIFVLA-KGTSEERCAVKVSGKLGGRQGGI  283 (1416)
T ss_pred             EEEcCCceEEEEcCCCcEEEEEEccchH-HHHHhcccceEEEEeeeceeeEEEecC-CCchHHhhhhhhccccCCccCcc
Confidence            88899999988874432 1222222110 00000000111111        11111 000      000   01111111


Q ss_pred             EEEeCCCC--CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-------eEEEEEcce--ecceEEEEE
Q 020454          240 RLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-------KLLGCFIGK--CSGSIRSIA  308 (326)
Q Consensus       240 ~iwd~~~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-------~~~~~~~~~--~~~~v~~l~  308 (326)
                      -.=....-  +.+-..+ .....+++++++..+..++.|...|.+.+|--...       +-...+.+.  ..+.|+.+.
T Consensus       284 A~sEssGvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~  362 (1416)
T KOG3617|consen  284 ACSESSGVLRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIR  362 (1416)
T ss_pred             ccccccccccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEE
Confidence            11000000  0011111 12357899999999999999999999999953321       122233321  256899999


Q ss_pred             ECCCCCEEEE
Q 020454          309 RHPTLPIIAS  318 (326)
Q Consensus       309 ~~p~~~~l~s  318 (326)
                      |.|-.+.++.
T Consensus       363 Wg~~k~~~av  372 (1416)
T KOG3617|consen  363 WGPIKSTAAV  372 (1416)
T ss_pred             eccccchhhh
Confidence            9986665544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0015  Score=56.98  Aligned_cols=94  Identities=21%  Similarity=0.224  Sum_probs=71.7

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      +..+..+.|+|.-.++|++..+|.|.+..+. -+.++.+..+..+.        .++++|.|  +|+.|++|-.||+|++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v--------~~sL~W~~--DGkllaVg~kdG~I~L   88 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENV--------TASLCWRP--DGKLLAVGFKDGTIRL   88 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCcc--------ceeeeecC--CCCEEEEEecCCeEEE
Confidence            4468889999999999999999999999987 66666655433221        24899998  6889999999999999


Q ss_pred             EeCCCCCCceeEE-eecCCceEEEEec
Q 020454          242 YDTSAQRRPVMSF-DFRETPIKAVAEE  267 (326)
Q Consensus       242 wd~~~~~~~~~~~-~~~~~~i~~v~~s  267 (326)
                      .|..++.. +..+ ...+..|.++-|+
T Consensus        89 ~Dve~~~~-l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   89 HDVEKGGR-LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             EEccCCCc-eeccccccccchheeecc
Confidence            99998743 4442 2344567777775

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.0042  Score=53.30  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-----EEEEEeCCCeEEEEeCCCCCCc
Q 020454          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-----KFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-----~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      +|.++.....|+--|++.|+.+...+.+..          |+-+.+.|...+.     .-+.|-.|..|.-||+|-....
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~  417 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN  417 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC----------cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence            445666677899999999998877665543          2233343332221     2355666889999999954331


Q ss_pred             e-eEEeec----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE-EEEEcceecceEEEEEECCCCCEEEEec
Q 020454          251 V-MSFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       251 ~-~~~~~~----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      . .-.+.+    .....|.+-..+| +|++|+.+|.|++||- .++. ...+++- ..+|..|..+.+|++|+..+
T Consensus       418 kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  418 KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeEEeeccCcEEEEec
Confidence            1 112222    2234555544444 8999999999999997 4544 3446775 88999999999999776543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.31  E-value=0.15  Score=47.71  Aligned_cols=228  Identities=12%  Similarity=0.137  Sum_probs=115.3

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeeccccccc--------ccCCCCceEEEEecCCcEE
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE--------ESSSRSRTLLTCTTKGKAS  136 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--------~~~~~~~~l~~~~~~g~v~  136 (326)
                      +..|++++.++.|.-+|..+|+.+-.+................++.++.....        .+...++.++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            34688888899999999999998777764221100000011233444331100        0112345788888999887


Q ss_pred             EEEcccccccc-ccccceEEEEEccC---CCceEEEEEcC--CCCEEEEecC----------CCeEEEEECCCceeeeee
Q 020454          137 MRSIEVTKVSA-ESSCSTVKSWNVCA---SGTIAFSKVDI--SEKFSLFGGK----------GVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       137 i~~~~~~~~~~-~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~sg~~----------d~~i~iwd~~~~~~~~~~  200 (326)
                      -.|.+..+..- ...++.+. |+..-   ...-..+.-.|  .+..+++|+.          +|.|+-+|.++++.++..
T Consensus       274 ALDA~TGk~~W~fg~~G~vd-l~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVD-LTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCCCcee-eecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            77755433210 01111111 11000   00001111222  2345666642          688999999999999887


Q ss_pred             cCCCCCCCCcCCCC--ce-------eeeEEeecCCCcEEEEEe------------------CCCeEEEEeCCCCCCceeE
Q 020454          201 KPPPKNSLGIFTPT--WF-------TSAAFLSIDDHRKFVAGT------------------NDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       201 ~~~~~~~~~~~~~~--~v-------~~~~~~p~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~  253 (326)
                      ............+.  +.       ...++.|.. + ++..+.                  ..+.|.-.|++++ +....
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG-k~~W~  429 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-G-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG-KERWV  429 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-C-eEEEeCCCccccccCCccccCcccccceEEEEeCCCC-ceEEE
Confidence            53211111000000  00       122333321 1 222221                  2345666677776 44555


Q ss_pred             EeecCC----------ceEEEEecC-CCC---eEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          254 FDFRET----------PIKAVAEEP-DSF---NIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       254 ~~~~~~----------~i~~v~~s~-~~~---~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      ++....          ++ -+.+.. +|+   .++.++.+|.++++|-++|+++...+
T Consensus       430 ~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       430 FQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            543111          11 112322 553   78899999999999999999886554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.30  E-value=0.073  Score=43.98  Aligned_cols=215  Identities=17%  Similarity=0.118  Sum_probs=116.9

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      ++.+--..+.|.-|+..+++. ..+...         +.+.+.....        ....|+++....  .+++.+...  
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p---------~~~~~~~~~d--------~~g~Lv~~~~g~--~~~~~~~~~--   96 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKK-RVFPSP---------GGFSSGALID--------AGGRLIACEHGV--RLLDPDTGG--   96 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCce-EEEECC---------CCcccceeec--------CCCeEEEEcccc--EEEeccCCc--
Confidence            566677778888898876654 233221         2333344333        334455544333  344432211  


Q ss_pred             cccccceEEEEE-c---cCCCceEEEEEcCCCCEEEEecC------C---CeEEEEECC-CceeeeeecCCCCCCCCcCC
Q 020454          147 AESSCSTVKSWN-V---CASGTIAFSKVDISEKFSLFGGK------G---VEVNVWDLD-KCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       147 ~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~sg~~------d---~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~  212 (326)
                            .+..+. .   ......+...++|+|.+-++...      .   ..-.+|-+. .+..+.....+-        
T Consensus        97 ------~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~--------  162 (307)
T COG3386          97 ------KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL--------  162 (307)
T ss_pred             ------eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE--------
Confidence                  111111 1   11234667788888876654333      0   011233333 233333222211        


Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC--C---CC-ceeEEeecCCceEEEEecCCCCeEEEEcCCC-cEEEE
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--Q---RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-DLASV  285 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~--~---~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg-~v~iw  285 (326)
                       ..-++++|+|.. ..++++=+..+.|.-|++..  .   .+ ....+....+..-.++...+|.+.+++-.+| .|.+|
T Consensus       163 -~~~NGla~SpDg-~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~  240 (307)
T COG3386         163 -TIPNGLAFSPDG-KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF  240 (307)
T ss_pred             -EecCceEECCCC-CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence             224588999942 23445556678888887652  1   11 1122223345556677778888776555554 89999


Q ss_pred             ECCCCeEEEEEcceecceEEEEEEC-CCCCEEEEecc
Q 020454          286 DIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCGF  321 (326)
Q Consensus       286 d~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~s~  321 (326)
                      +.. |+++..+.-+ ...+++++|- |+.+.|+..+.
T Consensus       241 ~pd-G~l~~~i~lP-~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         241 NPD-GKLLGEIKLP-VKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCC-CcEEEEEECC-CCCCccceEeCCCcCEEEEEec
Confidence            988 9999888876 6788888886 55555555443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.27  E-value=0.095  Score=44.69  Aligned_cols=160  Identities=14%  Similarity=0.105  Sum_probs=73.9

Q ss_pred             eEEEEEccCC--CceEEEEEcCCCCEEEEe--------------------cCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          153 TVKSWNVCAS--GTIAFSKVDISEKFSLFG--------------------GKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       153 ~~~~~~~~~~--~~v~~~~~~~~~~~l~sg--------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      ....|+....  ..-+.+.++|..+.++|.                    -...++.+||+.+.+.+..+.-.....   
T Consensus       169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~---  245 (461)
T PF05694_consen  169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ---  245 (461)
T ss_dssp             EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE---
T ss_pred             ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC---
Confidence            4556665332  235577788887888774                    235789999999998887765432211   


Q ss_pred             CCCCceeeeEEeecCCCcEEEE-EeCCCeEEEEeC-CCCC---CceeEEeec-----------------CCceEEEEecC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDT-SAQR---RPVMSFDFR-----------------ETPIKAVAEEP  268 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iwd~-~~~~---~~~~~~~~~-----------------~~~i~~v~~s~  268 (326)
                          -+..+.|..+++..+=++ +-...+|..|-- ..+.   +.+.++...                 ..-|+.+.+|.
T Consensus       246 ----~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  246 ----MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             ----EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             ----ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence                244667765544333333 333444444432 2221   011111110                 24579999999


Q ss_pred             CCCeEEEEc-CCCcEEEEECCCC---eEEEEEc-ce--------------ecceEEEEEECCCCCEEEEe
Q 020454          269 DSFNIYIGN-GSGDLASVDIRTG---KLLGCFI-GK--------------CSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       269 ~~~~l~~g~-~dg~v~iwd~~~~---~~~~~~~-~~--------------~~~~v~~l~~~p~~~~l~s~  319 (326)
                      |.++|+..+ .+|.|+.||+...   ++..++. +.              ..+...-|..|.||+.|...
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            999998555 6899999999863   4444332 10              11233567777787765543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.27  E-value=0.0083  Score=51.93  Aligned_cols=145  Identities=12%  Similarity=0.020  Sum_probs=86.3

Q ss_pred             CceEEEEEcCCCCEEEEe---cCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454          163 GTIAFSKVDISEKFSLFG---GKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg---~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~  238 (326)
                      ..+..-+|+|+++.++.-   ... ..+.++|+.+++....+....          .-...+|+|. ..+++++...||.
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g----------~~~~P~fspD-G~~l~f~~~rdg~  261 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG----------NNGAPAFSPD-GSKLAFSSSRDGS  261 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC----------ccCCccCCCC-CCEEEEEECCCCC
Confidence            356667788887554332   222 468999999877655443211          1223478883 2335556666774


Q ss_pred             --EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCc--EEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          239 --VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       239 --v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                        |+++|+... . +..+....+.-+.=.|+|||++|+ +.+..|.  |.++|...+.. ..+... .+.=..-.|+|+|
T Consensus       262 ~~iy~~dl~~~-~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~-~~~~~~p~~SpdG  337 (425)
T COG0823         262 PDIYLMDLDGK-N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS-GGGNSNPVWSPDG  337 (425)
T ss_pred             ccEEEEcCCCC-c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc-CCCCcCccCCCCC
Confidence              566677755 2 333444334344557999999988 6566665  66666665544 333321 2222267799999


Q ss_pred             CEEEEeccC
Q 020454          314 PIIASCGFL  322 (326)
Q Consensus       314 ~~l~s~s~D  322 (326)
                      ++|+..+..
T Consensus       338 ~~i~~~~~~  346 (425)
T COG0823         338 DKIVFESSS  346 (425)
T ss_pred             CEEEEEecc
Confidence            999888743

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0017  Score=60.14  Aligned_cols=92  Identities=20%  Similarity=0.300  Sum_probs=69.5

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE-
Q 020454          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-  307 (326)
Q Consensus       229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l-  307 (326)
                      .++.|+..|.+-..|.+..-.+...-+...++|++++|+.+|+.++.|-.+|.|.+||+..+++++.+..| ..+.+++ 
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~t~vi  179 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPVTGVI  179 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCccceEE
Confidence            78899999999999988643443443445679999999999999999999999999999999988877755 5555544 


Q ss_pred             --EECCCCCEEEEecc
Q 020454          308 --ARHPTLPIIASCGF  321 (326)
Q Consensus       308 --~~~p~~~~l~s~s~  321 (326)
                        .+..++..+.++-.
T Consensus       180 ~v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDT  195 (1206)
T ss_pred             EEEEeCCCcEEEEccC
Confidence              33344555555543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.17  E-value=0.0016  Score=36.68  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=30.5

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~  197 (326)
                      ...|.++.|+|...+||.+..+|.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457999999999999999999999999998 55544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.09  E-value=0.0021  Score=36.26  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       258 ~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      ...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356899999999999999999999999998 4443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.021  Score=49.19  Aligned_cols=142  Identities=22%  Similarity=0.201  Sum_probs=87.1

Q ss_pred             EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC-------EEEEecCCCeEEEEECCCce--ee
Q 020454          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-------FSLFGGKGVEVNVWDLDKCE--KI  197 (326)
Q Consensus       127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~sg~~d~~i~iwd~~~~~--~~  197 (326)
                      ..+.....++-.|++...        .+..|.....  |.-+.+.|+.+       .-+.|-.|+.|.-||.+-..  .+
T Consensus       350 ~~~~~~~~l~klDIE~GK--------IVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGK--------IVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             eCCCCcCcceeeecccce--------eeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            334444555656655433        7788887544  66666666432       12346778899999987322  12


Q ss_pred             eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc
Q 020454          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~  277 (326)
                      ...+.+.-.     ......  +|....+| ++++|+.+|.||+||- .+.+.-.-+.+-..+|..|..+.+|++|++.+
T Consensus       420 ~~~q~kqy~-----~k~nFs--c~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  420 AVVQSKQYS-----TKNNFS--CFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             eeeeccccc-----cccccc--eeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            222222100     001112  23333456 8999999999999996 34344445667778999999999999998765


Q ss_pred             CCCcEEEEECC
Q 020454          278 GSGDLASVDIR  288 (326)
Q Consensus       278 ~dg~v~iwd~~  288 (326)
                      .. .+.+.+..
T Consensus       491 ~t-yLlLi~t~  500 (644)
T KOG2395|consen  491 KT-YLLLIDTL  500 (644)
T ss_pred             cc-EEEEEEEe
Confidence            54 66666653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.04  E-value=0.084  Score=47.85  Aligned_cols=136  Identities=15%  Similarity=0.151  Sum_probs=72.9

Q ss_pred             CCCEEEEecCCCe-----EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC------eEEE
Q 020454          173 SEKFSLFGGKGVE-----VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRL  241 (326)
Q Consensus       173 ~~~~l~sg~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg------~v~i  241 (326)
                      +|.+.|+||.||.     +..||..+.+-.....-.        .  ...+.....- ++.+.++|+.++      .+..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--------~--~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~  448 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--------T--RRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVEC  448 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCC--------c--ceeeeEEEEE-CCEEEEEcCcCCCccccceEEE
Confidence            6788889999865     666776654422221110        0  1112222221 566777887544      5788


Q ss_pred             EeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCc-----EEEEECCCCeEEEE--EcceecceEEEEEECCCC
Q 020454          242 YDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKLLGC--FIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       242 wd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~-----v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~  313 (326)
                      ||+.+.. ..+..+...........+  ++...++|+.|+.     |..||..+.+....  +... ...+....+  ++
T Consensus       449 YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~g~~~~--~~  523 (571)
T KOG4441|consen  449 YDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-RSAVGVVVL--GG  523 (571)
T ss_pred             EcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-cccccEEEE--CC
Confidence            9988652 111112112122222222  5777778887763     78899887765432  2221 222222333  67


Q ss_pred             CEEEEeccCcc
Q 020454          314 PIIASCGFLEA  324 (326)
Q Consensus       314 ~~l~s~s~D~~  324 (326)
                      .+.+.||.||.
T Consensus       524 ~ly~vGG~~~~  534 (571)
T KOG4441|consen  524 KLYAVGGFDGN  534 (571)
T ss_pred             EEEEEecccCc
Confidence            78888888875

>smart00320 WD40 WD40 repeats

Probab=96.98  E-value=0.002  Score=33.89  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             CeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       290 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++...+..| ...|.++.|+|.+.++++++.|+.+
T Consensus         2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~   36 (40)
T smart00320        2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTI   36 (40)
T ss_pred             cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeE
Confidence            3556677777 8899999999999999999999875

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.83  E-value=0.024  Score=49.19  Aligned_cols=136  Identities=16%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCEE-EEecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCe--
Q 020454          165 IAFSKVDISEKFS-LFGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQ--  238 (326)
Q Consensus       165 v~~~~~~~~~~~l-~sg~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~--  238 (326)
                      -..-+|+|+|+.| ++...|+.  |.++|+....... +....         ..-+.-.|+|  +|+.++ +....|.  
T Consensus       240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~---------gi~~~Ps~sp--dG~~ivf~Sdr~G~p~  307 (425)
T COG0823         240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGF---------GINTSPSWSP--DGSKIVFTSDRGGRPQ  307 (425)
T ss_pred             cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCC---------ccccCccCCC--CCCEEEEEeCCCCCcc
Confidence            3455789999655 45556666  6667777665322 22211         1111336777  455554 4455554  


Q ss_pred             EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCc--EEEEECCCCeEEEEEcceecceEEEEEECCCCCE
Q 020454          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  315 (326)
                      |.++|+... . ...+......-..-.|+|||++|+.-+. +|.  |.+.|+.++.....+..  ......-.|.|++..
T Consensus       308 I~~~~~~g~-~-~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~--~~~~e~ps~~~ng~~  383 (425)
T COG0823         308 IYLYDLEGS-Q-VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS--TYLNESPSWAPNGRM  383 (425)
T ss_pred             eEEECCCCC-c-eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc--cccCCCCCcCCCCce
Confidence            555566644 2 3444433333336689999999985443 455  77777766654333331  222333445555544


Q ss_pred             E
Q 020454          316 I  316 (326)
Q Consensus       316 l  316 (326)
                      +
T Consensus       384 i  384 (425)
T COG0823         384 I  384 (425)
T ss_pred             E
Confidence            3

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.75  E-value=0.33  Score=42.21  Aligned_cols=70  Identities=13%  Similarity=0.054  Sum_probs=43.8

Q ss_pred             CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ..+..++.+|  +++++|.-..+|.+.+....-. +...++... ......+.|+-+...++.  ....+.+....
T Consensus       217 ~~i~~iavSp--ng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav~l~--~~~~l~lvg~~  287 (410)
T PF04841_consen  217 GPIIKIAVSP--NGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAVVLS--WEDELLLVGPD  287 (410)
T ss_pred             CCeEEEEECC--CCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcEEEE--eCCEEEEECCC
Confidence            4588889998  5668888888999998876543 445555543 345677788654332222  13345555433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.69  E-value=0.0094  Score=45.65  Aligned_cols=106  Identities=9%  Similarity=0.014  Sum_probs=64.5

Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +.-+++|+.++.|.+|................+.        + ..-+....++.+..++..||.||.|++... +.+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~--------i-~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~  139 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES--------I-DLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGY  139 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhccccc--------c-eeccccccccceeEEeccCCceeeeccccC-ceeee
Confidence            4678899999999999886322111111111111        1 111111224457889999999999999876 33444


Q ss_pred             EeecC-CceEEEEecCCCCeEEEE--cCCCcEEEEECCC
Q 020454          254 FDFRE-TPIKAVAEEPDSFNIYIG--NGSGDLASVDIRT  289 (326)
Q Consensus       254 ~~~~~-~~i~~v~~s~~~~~l~~g--~~dg~v~iwd~~~  289 (326)
                      ...|. .++.....+..+++++..  +.|..++.|++..
T Consensus       140 ~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  140 VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            44454 455555555566777776  7777788887764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.62  E-value=0.3  Score=44.31  Aligned_cols=115  Identities=16%  Similarity=0.149  Sum_probs=76.5

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      ...-+..+.-++..++-+....+.|||.+.+...+.-.-        .....|..+.|...++++.+++.+..+.|.+|-
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            344455555556655655567799999998875444221        122458899999888999999999999999986


Q ss_pred             C-C----CC---CCceeEEee--c-CCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          244 T-S----AQ---RRPVMSFDF--R-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       244 ~-~----~~---~~~~~~~~~--~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      - |    ..   ..++.++..  + ..+|.+..|-++|..++..  .+.++|+|-.
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            3 1    11   123444432  2 2589999999999666543  3478888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.61  E-value=0.22  Score=39.81  Aligned_cols=151  Identities=17%  Similarity=0.165  Sum_probs=96.8

Q ss_pred             CceEEEEEcCCC-CEEEEecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----
Q 020454          163 GTIAFSKVDISE-KFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----  235 (326)
Q Consensus       163 ~~v~~~~~~~~~-~~l~sg~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----  235 (326)
                      .....|.++|.- .-++.+-.=|+ ..+||....+....+.......       .--.-.|+|  +|.+|...-.     
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~--dG~~LYATEndfd~~  138 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSP--DGRLLYATENDFDPN  138 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce-------eecccccCC--CCcEEEeecCCCCCC
Confidence            345567788864 44555555554 6678888766544332211110       111225777  6666666533     


Q ss_pred             CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC------------------CCcEEEEECCCCeEEEE--
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------------------SGDLASVDIRTGKLLGC--  295 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~------------------dg~v~iwd~~~~~~~~~--  295 (326)
                      -|.|-+||.+..-+.+.++..|.-.-..+.|.+||+.++.+..                  .-++.+.|..+|.++.+  
T Consensus       139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~  218 (366)
T COG3490         139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT  218 (366)
T ss_pred             CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence            3689999999765667788877777788899999999986532                  12445566666666543  


Q ss_pred             Ec--ceecceEEEEEECCCCCEEEEeccCc
Q 020454          296 FI--GKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       296 ~~--~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ++  -+ ...|+.++..+++.+++.|-..|
T Consensus       219 Lp~~l~-~lSiRHld~g~dgtvwfgcQy~G  247 (366)
T COG3490         219 LPASLR-QLSIRHLDIGRDGTVWFGCQYRG  247 (366)
T ss_pred             Cchhhh-hcceeeeeeCCCCcEEEEEEeeC
Confidence            22  23 56799999999999888776554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.35  Score=41.67  Aligned_cols=140  Identities=16%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEE
Q 020454          165 IAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRL  241 (326)
Q Consensus       165 v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~i  241 (326)
                      -..+++++.++ ..+....++.|.+.|..+.+......-..          ....+++.|. .+...++-.  .++++.+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----------~P~~~~~~~~-~~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----------GPVGLAVDPD-GKYVYVANAGNGNNTVSV  144 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----------CCceEEECCC-CCEEEEEecccCCceEEE
Confidence            44677787776 55555566899999977666555433221          2346788774 223344444  3789999


Q ss_pred             EeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEE-E----EcceecceEEEEEECCCCCE
Q 020454          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG-C----FIGKCSGSIRSIARHPTLPI  315 (326)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~-~----~~~~~~~~v~~l~~~p~~~~  315 (326)
                      .|..+. ..+.+......+ ..++++|+|..+++.. .++.|.++|........ .    +.-  ...-..++++|++.+
T Consensus       145 id~~t~-~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~~  220 (381)
T COG3391         145 IDAATN-KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGNR  220 (381)
T ss_pred             EeCCCC-eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCCE
Confidence            998877 445555444455 8889999999877655 78899999987765553 1    111  223457888999885


Q ss_pred             EEEe
Q 020454          316 IASC  319 (326)
Q Consensus       316 l~s~  319 (326)
                      +...
T Consensus       221 ~yV~  224 (381)
T COG3391         221 VYVA  224 (381)
T ss_pred             EEEE
Confidence            5443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.58  E-value=0.24  Score=38.44  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             eeeEEeecCCCcEEEEEeCCCeEEEEe--CCCCC----CceeEEee----cCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          217 TSAAFLSIDDHRKFVAGTNDHQVRLYD--TSAQR----RPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd--~~~~~----~~~~~~~~----~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                      ++++|... ...+..+-+.+-.|.-||  ..++.    +.+..++.    ..-.--.+++...|++.++.-..++|.-+|
T Consensus       161 Ngl~Wd~d-~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSD-AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             cccccccc-CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35677632 233445667777887777  44331    11222221    111123345566788888888889999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEEC-CCCC-EEEEecc
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARH-PTLP-IIASCGF  321 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~-p~~~-~l~s~s~  321 (326)
                      ..+|+.+.+++-. ...|++.+|- |+-. +.+|+..
T Consensus       240 p~tGK~L~eiklP-t~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  240 PTTGKILLEIKLP-TPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CCCCcEEEEEEcC-CCceEEEEecCCCccEEEEEehh
Confidence            9999999999887 8899999997 4333 4444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.50  E-value=0.39  Score=39.87  Aligned_cols=219  Identities=12%  Similarity=0.022  Sum_probs=110.4

Q ss_pred             EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (326)
Q Consensus        71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~  150 (326)
                      |-....|.+||..+-....++...       .......+.           ..+.+.....+..+.++++....      
T Consensus        63 G~RtDvv~~~D~~TL~~~~EI~iP-------~k~R~~~~~-----------~~~~~~ls~dgk~~~V~N~TPa~------  118 (342)
T PF06433_consen   63 GERTDVVEIWDTQTLSPTGEIEIP-------PKPRAQVVP-----------YKNMFALSADGKFLYVQNFTPAT------  118 (342)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEET-------TS-B--BS-------------GGGEEE-TTSSEEEEEEESSSE------
T ss_pred             ccceeEEEEEecCcCcccceEecC-------Ccchheecc-----------cccceEEccCCcEEEEEccCCCC------
Confidence            556677999999887776666541       110111111           11234444445555666654322      


Q ss_pred             cceEEEEEccCCCceE------EEEEcCCC-CEEEEecCCCeEEEEECC-CceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          151 CSTVKSWNVCASGTIA------FSKVDISE-KFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       151 ~~~~~~~~~~~~~~v~------~~~~~~~~-~~l~sg~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                        .+.+.++....-+.      |.-.-|.+ +-|.+-+.||.+.-..+. .++...+......    .........-++.
T Consensus       119 --SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~----~~~dp~f~~~~~~  192 (342)
T PF06433_consen  119 --SVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD----PDDDPLFEHPAYS  192 (342)
T ss_dssp             --EEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS----TTTS-B-S--EEE
T ss_pred             --eEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC----CCCcccccccceE
Confidence              33333333222111      22222322 345666788998888887 3444322111000    0000111122232


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEee----------cCCceEEEEecCCCCeEEEEcCCC----------c
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDF----------RETPIKAVAEEPDSFNIYIGNGSG----------D  281 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~----------~~~~i~~v~~s~~~~~l~~g~~dg----------~  281 (326)
                      .  .+..++-.+.+|.|+--|+.... +....+..          ..+...-+++++..+.|++--..|          .
T Consensus       193 ~--~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  193 R--DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             T--TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             C--CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence            2  22255557889999998887542 11222221          112234467777665555432222          5


Q ss_pred             EEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEec-cCc
Q 020454          282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCG-FLE  323 (326)
Q Consensus       282 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s-~D~  323 (326)
                      |-+||+.+++.+.++..  ..++.+|..+.+. ++|++.+ .|+
T Consensus       271 VWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             EEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTT
T ss_pred             EEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCC
Confidence            88889999999999983  5589999999754 5776543 344

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.49  E-value=0.36  Score=39.40  Aligned_cols=217  Identities=15%  Similarity=0.113  Sum_probs=110.0

Q ss_pred             CCCeEEEEecCCcEEEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           64 NDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      .++.|++|+.+| |.+++.. ..+.......          .+|..+...+        .-+.+++- .|+.++++++..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~--------~~~~llvL-sd~~l~~~~L~~   65 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLP--------ELNLLLVL-SDGQLYVYDLDS   65 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEec--------ccCEEEEE-cCCccEEEEchh
Confidence            344699999988 8999982 2333222222          3477777666        33444444 459999999886


Q ss_pred             cccccccccce-----EEEEEccCCCceEEEE--EcCCC-CEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCcCC
Q 020454          143 TKVSAESSCST-----VKSWNVCASGTIAFSK--VDISE-KFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFT  212 (326)
Q Consensus       143 ~~~~~~~~~~~-----~~~~~~~~~~~v~~~~--~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~  212 (326)
                      ...........     ...........+..++  -...+ ..|++ .....|.+|........+  ..+       ++..
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~k-------e~~l  137 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLK-------EISL  137 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeE-------EEEc
Confidence            54322111000     0011122233444444  22233 44544 445589998876532211  111       1223


Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee------------cCCceEEEEecCCCCeEEEEcCCC
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------------RETPIKAVAEEPDSFNIYIGNGSG  280 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------~~~~i~~v~~s~~~~~l~~g~~dg  280 (326)
                      +..+..++|..    +.++.+..++ ..+.|+.++ .+..-+..            ...++..+.. +++.+|++-  +.
T Consensus       138 p~~~~~i~~~~----~~i~v~~~~~-f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~  208 (275)
T PF00780_consen  138 PDPPSSIAFLG----NKICVGTSKG-FYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN  208 (275)
T ss_pred             CCCcEEEEEeC----CEEEEEeCCc-eEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc
Confidence            45678889983    2777777554 678888854 22211111            1123444444 345566653  33


Q ss_pred             cEEEEECCCCeEEE--EEcceecceEEEEEECCCCCEEEEeccC
Q 020454          281 DLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       281 ~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      .-.+.|. .|++..  .+.  ......++++  ..++|+..+.+
T Consensus       209 ~g~fv~~-~G~~~r~~~i~--W~~~p~~~~~--~~pyli~~~~~  247 (275)
T PF00780_consen  209 IGVFVNK-NGEPSRKSTIQ--WSSAPQSVAY--SSPYLIAFSSN  247 (275)
T ss_pred             eEEEEcC-CCCcCcccEEE--cCCchhEEEE--ECCEEEEECCC
Confidence            3333443 444433  222  2445556666  34566665543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=96.37  E-value=0.34  Score=44.02  Aligned_cols=72  Identities=8%  Similarity=0.047  Sum_probs=43.3

Q ss_pred             CCcEEEEEeCC------CeEEEEeCCC-CC-CceeEEeecCCceEEEEecCCCCeEEEEcCCC--cEEEEECCCCeEEEE
Q 020454          226 DHRKFVAGTND------HQVRLYDTSA-QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGC  295 (326)
Q Consensus       226 ~~~~l~~~~~d------g~v~iwd~~~-~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg--~v~iwd~~~~~~~~~  295 (326)
                      ++++.+.|+.+      ..+..||+.+ .. ..+..+.........+++  +++..++|+.+|  .+..||..+.+....
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence            45566777654      2467899886 31 222233222223333333  677888999888  788899988776544


Q ss_pred             Ecce
Q 020454          296 FIGK  299 (326)
Q Consensus       296 ~~~~  299 (326)
                      .+.|
T Consensus       541 ~~~~  544 (557)
T PHA02713        541 CHQH  544 (557)
T ss_pred             hhhc
Confidence            4444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.35  E-value=0.64  Score=40.73  Aligned_cols=172  Identities=11%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      .+|+-..+++|+|+.--+++....+..       .  ..+..+-           . +.++....++.|.+||+....  
T Consensus        81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~-------~--~~~~~If-----------~-G~LL~~~~~~~i~~yDw~~~~--  137 (443)
T PF04053_consen   81 RYAVLESSSTIKIYKNFKNEVVKSIKL-------P--FSVEKIF-----------G-GNLLGVKSSDFICFYDWETGK--  137 (443)
T ss_dssp             EEEEE-TTS-EEEEETTEE-TT------------S--S-EEEEE-------------SSSEEEEETTEEEEE-TTT----
T ss_pred             cEEEEECCCeEEEEEcCccccceEEcC-------C--cccceEE-----------c-CcEEEEECCCCEEEEEhhHcc--
Confidence            377777789999973323333233332       0  1233232           1 356666666689999987654  


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-----------eeeeecCCCCCCCCcCCCCc
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-----------KIWTAKPPPKNSLGIFTPTW  215 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~  215 (326)
                            .++..++   .+|..+-|++++++++..+.+ .+.|++.....           .......         ....
T Consensus       138 ------~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---------~~~~  198 (443)
T PF04053_consen  138 ------LIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---------ISER  198 (443)
T ss_dssp             ------EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---------E-S-
T ss_pred             ------eeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---------ecce
Confidence                  4555553   248899999999999988766 67776654330           1111110         0134


Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      |.+..|.-   . .|+-.+.. .++.  +..+  ....+..-+.++.=+.+.|+.+.++..+.|+.+..+.+..
T Consensus       199 IkSg~W~~---d-~fiYtT~~-~lkY--l~~G--e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  199 IKSGCWVE---D-CFIYTTSN-HLKY--LVNG--ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -SEEEEET---T-EEEEE-TT-EEEE--EETT--EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             eEEEEEEc---C-EEEEEcCC-eEEE--EEcC--CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            66777762   2 44444444 6665  3333  2344444456777777888778888888888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.15  Score=43.50  Aligned_cols=152  Identities=11%  Similarity=0.088  Sum_probs=95.5

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee-
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-  200 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-  200 (326)
                      +.++.+.+..+|.+.-|-...      ..+...-.++....++|.++.|++|.+.+|+--.+.+|.+++....+..... 
T Consensus        32 DaNkqlfavrSggatgvvvkg------pndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKG------PNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeC------CCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            456777777888877777543      2344455566666789999999999999999999999999998543322111 


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc--C
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--G  278 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~--~  278 (326)
                      ..++..      ...|.+..|..+   .-+|..+..| +.+|-....++.++..+.+.-.|.=..|.++.+.++-++  .
T Consensus       106 ~~ck~k------~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~  175 (657)
T KOG2377|consen  106 QECKTK------NANILGFCWTSS---TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVL  175 (657)
T ss_pred             HHhccC------cceeEEEEEecC---eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccc
Confidence            111100      023667788743   3566665444 667765554455666666767777778888877655332  3


Q ss_pred             CCcEEEEECCC
Q 020454          279 SGDLASVDIRT  289 (326)
Q Consensus       279 dg~v~iwd~~~  289 (326)
                      .+++.=+-+++
T Consensus       176 ~n~lnpf~~~~  186 (657)
T KOG2377|consen  176 ENVLNPFHFRA  186 (657)
T ss_pred             ccccccEEEee
Confidence            33343344443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.28  E-value=0.6  Score=39.77  Aligned_cols=147  Identities=14%  Similarity=0.141  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCEEEE--ecCC---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe-ecCCCcEEEEEeCCCe
Q 020454          165 IAFSKVDISEKFSLF--GGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL-SIDDHRKFVAGTNDHQ  238 (326)
Q Consensus       165 v~~~~~~~~~~~l~s--g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~~l~~~~~dg~  238 (326)
                      +..+.|.++++.|+.  ...+   ..+.+.|..+++............+..     -....|. +. +..++.....+|.
T Consensus       186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~-----~~~~~~~~~~-~~~~l~~s~~~G~  259 (353)
T PF00930_consen  186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV-----YDPPHFLGPD-GNEFLWISERDGY  259 (353)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS-----SSEEEE-TTT-SSEEEEEEETTSS
T ss_pred             cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee-----ecccccccCC-CCEEEEEEEcCCC
Confidence            667888888773322  2222   236667776655433332222222111     1233444 33 3446666667886


Q ss_pred             EEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEE-EEcCCC----cEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          239 VRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIY-IGNGSG----DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~-~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      -+||-+.........+......|+. +.|+++++.|+ ++..++    .++.-++..+..+..+... .+.-..+.|+|+
T Consensus       260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~-~~~~~~~~~Spd  338 (353)
T PF00930_consen  260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE-DGDHYSASFSPD  338 (353)
T ss_dssp             EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT-SSTTEEEEE-TT
T ss_pred             cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC-CCCceEEEECCC
Confidence            5555444322334566566667755 67888877665 666533    4555666623344445532 222259999999


Q ss_pred             CCEEEE
Q 020454          313 LPIIAS  318 (326)
Q Consensus       313 ~~~l~s  318 (326)
                      +++++-
T Consensus       339 g~y~v~  344 (353)
T PF00930_consen  339 GKYYVD  344 (353)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.27  E-value=0.5  Score=44.00  Aligned_cols=91  Identities=16%  Similarity=0.187  Sum_probs=56.5

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEECCC----------cee--eeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEE
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDK----------CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKF  230 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~----------~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l  230 (326)
                      .|..+.++|+|++||..|..+.. |-.+..          ++.  ...................|..+.|+|.. ++.+|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            58899999999999988886553 333321          111  11111111111111123478899999964 34589


Q ss_pred             EEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          231 VAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                      ++-+.|+++|+||+.....|...+.
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEecCCEEEEEecCCCCCCeEEEE
Confidence            9999999999999986555555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.035  Score=51.99  Aligned_cols=71  Identities=14%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEE--EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVK--SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      ..++.|+..|.+...|+..          .++  .|+.+...+|.+++|+.+|..++.|-.+|.|.+||+..++....+.
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~----------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTG----------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhc----------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            4688899999988777543          233  5666678899999999999999999999999999999988777665


Q ss_pred             CCC
Q 020454          202 PPP  204 (326)
Q Consensus       202 ~~~  204 (326)
                      .+.
T Consensus       170 e~~  172 (1206)
T KOG2079|consen  170 EHG  172 (1206)
T ss_pred             ecC
Confidence            544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.08  E-value=0.57  Score=41.54  Aligned_cols=121  Identities=11%  Similarity=-0.026  Sum_probs=72.5

Q ss_pred             CCceEEEEEcCCC-----CEEEEecCCCeEEEEECCC-----ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454          162 SGTIAFSKVDISE-----KFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (326)
Q Consensus       162 ~~~v~~~~~~~~~-----~~l~sg~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~  231 (326)
                      -+.|..+.|.|-+     .+||+ -....|.+|.+..     .+.+..-..+-.+.    .|.--.+..|+|...  .|+
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~----~pvLpQGCVWHPk~~--iL~  128 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREP----FPVLPQGCVWHPKKA--ILT  128 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCC----cccCCCcccccCCCc--eEE
Confidence            3579999999842     56666 4556899999862     12111111100000    111234668999654  777


Q ss_pred             EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC
Q 020454          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT  289 (326)
Q Consensus       232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~  289 (326)
                      +-+....-.+++.+.....++.--...+.|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus       129 VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  129 VLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            76666655677777543333322244578999999999998875433 33468888654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.98  E-value=0.52  Score=43.32  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=74.4

Q ss_pred             CCceEEEEecCCcEEEEEcccccc----ccccccc-e----E-EEEEccCCCceEEEEEc--CCCCEEEEecCCCeEEEE
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKV----SAESSCS-T----V-KSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVW  189 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~----~~~~~~~-~----~-~~~~~~~~~~v~~~~~~--~~~~~l~sg~~d~~i~iw  189 (326)
                      ....|++|..||.|.+|..+.--.    .....+. .    + -.+....+..++.++++  ...++||++++...|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            567899999999999998753110    1000010 0    0 01333345689999999  778999999999999887


Q ss_pred             ECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCC---Cc-EEEEEeCCCeEEEEeC
Q 020454          190 DLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HR-KFVAGTNDHQVRLYDT  244 (326)
Q Consensus       190 d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~-~l~~~~~dg~v~iwd~  244 (326)
                      -..... .......       ..+...|.+|+|.+...   |. .+++++-.|.+-+|++
T Consensus       193 af~l~~~r~~~~~s-------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPS-------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccc-------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            765421 1111111       11334577999988642   22 6778899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.92  E-value=0.97  Score=38.87  Aligned_cols=136  Identities=13%  Similarity=0.088  Sum_probs=57.9

Q ss_pred             CCcEEEEEccccccccccccceEEEEEccCCC-ceEEEEEcC--CCCEEEE-ecCCCeEEEE-ECCCce----eeeeecC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASG-TIAFSKVDI--SEKFSLF-GGKGVEVNVW-DLDKCE----KIWTAKP  202 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~s-g~~d~~i~iw-d~~~~~----~~~~~~~  202 (326)
                      ...+.+||+....        .++..++...+ -...++|..  +..+=.+ +....+|..| ....++    .+-.+..
T Consensus       221 G~~l~vWD~~~r~--------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  221 GHSLHVWDWSTRK--------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             --EEEEEETTTTE--------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             cCeEEEEECCCCc--------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence            4567888877654        45555654332 244566544  3433222 2234444443 323332    2222222


Q ss_pred             CCCCCCCcC--------CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--c---------------
Q 020454          203 PPKNSLGIF--------TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R---------------  257 (326)
Q Consensus       203 ~~~~~~~~~--------~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~---------------  257 (326)
                      .+.+.+.+.        .|.-|+.+..+.+ +..+.+++-..|.|+.||+.....|...-+.  .               
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlD-DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~  371 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLD-DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR  371 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TT-S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred             cccCcccccccccccccCCCceEeEEEccC-CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence            222222221        1456788888874 4445567778999999999866555443321  1               


Q ss_pred             -CCceEEEEecCCCCeEEEE
Q 020454          258 -ETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       258 -~~~i~~v~~s~~~~~l~~g  276 (326)
                       .+...-|..|.||+.|+..
T Consensus       372 l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  372 LRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             --S----EEE-TTSSEEEEE
T ss_pred             cCCCCCeEEEccCCeEEEEE
Confidence             0123557788899888854

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=0.99  Score=41.25  Aligned_cols=190  Identities=12%  Similarity=0.142  Sum_probs=94.4

Q ss_pred             CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (326)
Q Consensus        75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~  154 (326)
                      -.|+||+. .|.++..+.-.       + +.+.++.|.         .+..|+....+|.+++|++.......-+ .+  
T Consensus        64 ~~I~If~~-sG~lL~~~~w~-------~-~~lI~mgWs---------~~eeLI~v~k~g~v~Vy~~~ge~ie~~s-vg--  122 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWK-------H-GELIGMGWS---------DDEELICVQKDGTVHVYGLLGEFIESNS-VG--  122 (829)
T ss_pred             eeEEEEec-cccchHHHHhc-------C-CCeeeeccc---------CCceEEEEeccceEEEeecchhhhcccc-cc--
Confidence            45888888 67766655431       1 367778863         4678999999999999997654322110 00  


Q ss_pred             EEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEE
Q 020454          155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAG  233 (326)
Q Consensus       155 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~  233 (326)
                        .+ .....|....+..+|-.+++.+ +..+.+.+.... ..++.+..+...  +..    ++-...+.. ....++-.
T Consensus       123 --~e-~~~~~I~ec~~f~~GVavlt~~-g~v~~i~~~~~~-~~~~~~diP~~~--~~~----~~Wt~~~~~~~~~~ll~v  191 (829)
T KOG2280|consen  123 --FE-SQMSDIVECRFFHNGVAVLTVS-GQVILINGVEEP-KLRKMPDIPYNE--LPK----SCWTVFQPHRQSTILLDV  191 (829)
T ss_pred             --cc-cccCceeEEEEecCceEEEecC-CcEEEEcCCCcc-hhhhCCCCCCcc--CCC----cceeEecCCCcceeEEee
Confidence              00 0112333333333554444432 223334443321 122222211111  000    111111110 01111111


Q ss_pred             e-CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          234 T-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       234 ~-~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      . ..+ ..++-..........+....+.+..+..||+.++|+-=..+|.|.+-+....+.+..+.
T Consensus       192 ~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  192 DVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             chhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            1 111 11222222212233343344678888999999999988999999998887666655554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.80  E-value=0.8  Score=36.99  Aligned_cols=174  Identities=8%  Similarity=0.057  Sum_probs=98.5

Q ss_pred             EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g  133 (326)
                      +.++.|  +++.+.|++-.....-.|+=..+|+++..+....       -.-.-++.+..        .+.+.++--.++
T Consensus        88 vS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig--------~n~fvi~dER~~  150 (316)
T COG3204          88 VSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIG--------GNQFVIVDERDR  150 (316)
T ss_pred             ccceee--CCCcceEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEec--------CCEEEEEehhcc
Confidence            444444  3444456666666665565555888888876521       12222344433        334555555678


Q ss_pred             cEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC--CCCCCCc
Q 020454          134 KASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP--PKNSLGI  210 (326)
Q Consensus       134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~  210 (326)
                      .+.++.++.........+-.+.+=...+ +.....++++|.++.|..+=+-+-+.||.+.........+..  +.....+
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            8888887765433222222222222222 456889999999888878777778888877633311111111  0000001


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                       .-..|+++.|.+.. +.+++-+..++.+.-.|...
T Consensus       231 -f~~DvSgl~~~~~~-~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         231 -FVLDVSGLEFNAIT-NSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             -EeeccccceecCCC-CcEEEEecCCceEEEEecCC
Confidence             11357788898764 44777777888888888774

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.66  E-value=2  Score=40.56  Aligned_cols=69  Identities=14%  Similarity=0.191  Sum_probs=45.4

Q ss_pred             CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      .+.|.-.|.++++..+..+....+.++.-.+....=+.+. ..++   ..++.++.+|.++++|.+++ +++..
T Consensus       413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~  484 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTG-EPIVP  484 (764)
T ss_pred             cceEEEEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCC-CEEee
Confidence            3567888999999999888766666554333221111121 1133   27889999999999999987 44443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.60  E-value=0.67  Score=42.29  Aligned_cols=135  Identities=11%  Similarity=-0.008  Sum_probs=73.4

Q ss_pred             ceEEEEEcCCCCEEEEec------CCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454          164 TIAFSKVDISEKFSLFGG------KGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~  235 (326)
                      .+...+++|+++.++..-      .|.  .|.+++..... .....+.           ..+.-.|+|  ++..+++...
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~-----------~~t~PsWsp--DG~~lw~v~d  416 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH-----------SLTRPSWSL--DADAVWVVVD  416 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC-----------CCCCceECC--CCCceEEEec
Confidence            567888999998776544      233  45555542211 1111111           133457777  3334444432


Q ss_pred             ------------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEE---EECCCCeE-E---EEE
Q 020454          236 ------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS---VDIRTGKL-L---GCF  296 (326)
Q Consensus       236 ------------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~i---wd~~~~~~-~---~~~  296 (326)
                                  .+.+.+.++..+ ....   .....|..+.|||||..|+.-. +|.|++   -....|+. +   ..+
T Consensus       417 g~~~~~v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l  491 (591)
T PRK13616        417 GNTVVRVIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV  491 (591)
T ss_pred             CcceEEEeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence                        233433344433 1111   2245799999999999988654 477777   44444541 1   112


Q ss_pred             cceecceEEEEEECCCCCEEE
Q 020454          297 IGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       297 ~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      .......+.+++|.+++.+++
T Consensus       492 ~~~l~~~~~~l~W~~~~~L~V  512 (591)
T PRK13616        492 GPGLGDTAVSLDWRTGDSLVV  512 (591)
T ss_pred             ecccCCccccceEecCCEEEE
Confidence            222133468899999887553

>PHA02713 hypothetical protein; Provisional

Probab=95.60  E-value=1.8  Score=39.54  Aligned_cols=136  Identities=11%  Similarity=0.091  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCC-----eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----------
Q 020454          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----------  236 (326)
Q Consensus       173 ~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----------  236 (326)
                      ++++.+.||.++     .+..||..+.+-.... ..+       .+..-.+++..   ++++.+.|+.+           
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~mp-------~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-DMP-------IALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECC-CCC-------cccccccEEEE---CCEEEEEeCCCccccccccccc
Confidence            567778888764     4788888765422211 111       11111111211   45577777654           


Q ss_pred             ------------CeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCC------CcEEEEECCC-CeE--EE
Q 020454          237 ------------HQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRT-GKL--LG  294 (326)
Q Consensus       237 ------------g~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d------g~v~iwd~~~-~~~--~~  294 (326)
                                  ..+..||+.+.. ..+..+.........+++  +++..+.|+.+      ..+..||..+ .+.  +.
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                        247788887541 111111111111112222  46666677654      2467899987 443  33


Q ss_pred             EEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          295 CFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .++.. ......+.+  ++.+.+.||.|+.
T Consensus       498 ~m~~~-r~~~~~~~~--~~~iyv~Gg~~~~  524 (557)
T PHA02713        498 TTESR-LSALHTILH--DNTIMMLHCYESY  524 (557)
T ss_pred             ccCcc-cccceeEEE--CCEEEEEeeecce
Confidence            34332 222333333  7789999998873

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.60  E-value=0.64  Score=42.27  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=71.2

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      .-++-+...++.|||...+.+..+ ..+      ...+.|.++.|....      ++..+++.+....|.+|.....+..
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~-~~f------~~~~~I~dLDWtst~------d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYE-ESF------SEDDPIRDLDWTSTP------DGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEe-eee------cCCCceeeceeeecC------CCCEEEEEEcCcEEEEEEccchhhh
Confidence            334444456799999976663222 221      345789999876543      6778999999999999975432211


Q ss_pred             -cccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCCCeEEEEECC
Q 020454          147 -AESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD  192 (326)
Q Consensus       147 -~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~  192 (326)
                       .+.....++..++.  +..+|....|.++|.+++.+  ++.+.|+|-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence             12223345555443  34578899999888877654  4578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.57  E-value=0.98  Score=36.41  Aligned_cols=145  Identities=10%  Similarity=0.029  Sum_probs=82.5

Q ss_pred             ceEEEEEcCCCCEEEEec---CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          164 TIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                      .+...+++++++.+|...   ....+.++......... ...           ..++.-.|.+.  +...+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g-----------~~l~~PS~d~~--g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG-----------GSLTRPSWDPD--GWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC-----------CccccccccCC--CCEEEEEcCCCceE
Confidence            678889999997665544   33445555543222211 111           12445567763  54666656666666


Q ss_pred             EEe-CCCCCCceeEEeec--CCceEEEEecCCCCeEEEEc---CCCcEEEEECC---CC------eEEEEEcceecceEE
Q 020454          241 LYD-TSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGN---GSGDLASVDIR---TG------KLLGCFIGKCSGSIR  305 (326)
Q Consensus       241 iwd-~~~~~~~~~~~~~~--~~~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~---~~------~~~~~~~~~~~~~v~  305 (326)
                      ++. ...+..........  ...|+.+.+||||..++.-.   .++.|.+=-+.   .+      ..+...... ...+.
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~  169 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVT  169 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcce
Confidence            663 33232222222222  12899999999999888444   35677776544   23      111112222 45899


Q ss_pred             EEEECCCCCEEEEeccCc
Q 020454          306 SIARHPTLPIIASCGFLE  323 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~  323 (326)
                      .++|.+++.+++.+...+
T Consensus       170 ~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  170 DVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eeeecCCCEEEEEeCCCC
Confidence            999999988777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.55  E-value=1.4  Score=38.16  Aligned_cols=157  Identities=7%  Similarity=-0.085  Sum_probs=79.4

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc--cc-----
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN--GD-----   86 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~--~~-----   86 (326)
                      .-++++|+..|.+||++......+...+..... -..+..-+.+...-+..+...++--.-..+.||.+..  +.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            368999999999999998665222222322221 1122222223322122233333346668888887731  11     


Q ss_pred             ee--eeecccCCCCCCCCCCCeeeee--cccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC
Q 020454           87 LR--VAISNAGDSGAQPEDDGIVGLH--LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        87 ~~--~~~~~~~~~~~~~~~~~i~~l~--~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      ..  ..+.....    .  .....+.  .|...     .....+.+=+.||.+.+++-+...          -...+..-
T Consensus       116 ~~~L~~~yeh~l----~--~~a~nm~~G~Fgg~-----~~~~~IcVQS~DG~L~~feqe~~~----------f~~~lp~~  174 (418)
T PF14727_consen  116 QYQLELIYEHSL----Q--RTAYNMCCGPFGGV-----KGRDFICVQSMDGSLSFFEQESFA----------FSRFLPDF  174 (418)
T ss_pred             EEEEEEEEEEec----c--cceeEEEEEECCCC-----CCceEEEEEecCceEEEEeCCcEE----------EEEEcCCC
Confidence            10  11110000    0  1111111  11110     124678888999999999854321          11111111


Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECC
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLD  192 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~  192 (326)
                      --.-.+.+.+..+.|++++.+..+..|...
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            112245677777888899999899998865

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.55  E-value=2.2  Score=40.36  Aligned_cols=277  Identities=14%  Similarity=0.038  Sum_probs=134.6

Q ss_pred             CcccccCCCCCCCeeeeeecCcccEEEEEecCCcCCCccee--eeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEE
Q 020454            2 PRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (326)
Q Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i   79 (326)
                      ||.--..+.+....-|+++..||.+.-+.+... +|...-.  ..++  ..+...-.+..-   . ..-+.+..|+-..+
T Consensus       583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~-tg~lsd~Kk~~lG--t~P~~Lr~f~sk---~-~t~vfa~sdrP~vi  655 (1096)
T KOG1897|consen  583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDIN-TGQLSDRKKVTLG--TQPISLRTFSSK---S-RTAVFALSDRPTVI  655 (1096)
T ss_pred             chheeeEEeeccceEEEEEcCCceEEEEEEEcc-cceEccccccccC--CCCcEEEEEeeC---C-ceEEEEeCCCCEEE
Confidence            455445555555677888899999887665543 1111000  0111  122222223221   1 12344555566666


Q ss_pred             Eeccccceeee-ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE
Q 020454           80 LNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN  158 (326)
Q Consensus        80 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~  158 (326)
                      |.. ++++.-. +..          ..+..++.++.+.     ....++.+ ..+.+.+..++.-...      .++.  
T Consensus       656 Y~~-n~kLv~spls~----------kev~~~c~f~s~a-----~~d~l~~~-~~~~l~i~tid~iqkl------~irt--  710 (1096)
T KOG1897|consen  656 YSS-NGKLVYSPLSL----------KEVNHMCPFNSDA-----YPDSLASA-NGGALTIGTIDEIQKL------HIRT--  710 (1096)
T ss_pred             Eec-CCcEEEeccch----------HHhhhhccccccc-----CCceEEEe-cCCceEEEEecchhhc------ceee--
Confidence            665 3443222 221          1233333333221     22344444 4455666665542211      2222  


Q ss_pred             ccCCCceEEEEEcCCCCEEEEec-----------CCC---eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          159 VCASGTIAFSKVDISEKFSLFGG-----------KGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       159 ~~~~~~v~~~~~~~~~~~l~sg~-----------~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                      +.-......+.+++....+++.+           ...   .++++|-++-+.+...+....+.     .-.+.++.|.-+
T Consensus       711 vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-----~~Si~s~~~~~d  785 (1096)
T KOG1897|consen  711 VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-----ALSIISCKFTDD  785 (1096)
T ss_pred             ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce-----eeeeeeeeecCC
Confidence            22234455555555333333322           122   25566655544443322222111     123445557643


Q ss_pred             CCCcEEEEEeC----------CCeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          225 DDHRKFVAGTN----------DHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       225 ~~~~~l~~~~~----------dg~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                       .+.++++|+.          .|+|.+|......+  .+.+... ++.+.++.. -+|+++|.  -+..|++|+..+++.
T Consensus       786 -~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v-~Gav~aL~~-fngkllA~--In~~vrLye~t~~~e  860 (1096)
T KOG1897|consen  786 -PNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV-KGAVYALVE-FNGKLLAG--INQSVRLYEWTTERE  860 (1096)
T ss_pred             -CceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee-ccceeehhh-hCCeEEEe--cCcEEEEEEccccce
Confidence             2557777753          46777777654211  1222222 234444432 25666653  445899999998877


Q ss_pred             EEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          293 LGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       293 ~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ++.-..+ ..++..|...-.+..|+.|-.
T Consensus       861 Lr~e~~~-~~~~~aL~l~v~gdeI~VgDl  888 (1096)
T KOG1897|consen  861 LRIECNI-SNPIIALDLQVKGDEIAVGDL  888 (1096)
T ss_pred             ehhhhcc-cCCeEEEEEEecCcEEEEeec
Confidence            7655555 778888887777777877754

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.54  E-value=0.53  Score=33.19  Aligned_cols=110  Identities=14%  Similarity=0.176  Sum_probs=70.7

Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-----CCCEEEEecCCCeEEEEECCCceeee
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCEKIW  198 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~sg~~d~~i~iwd~~~~~~~~  198 (326)
                      ..|++++..|+|.+++...........+..++..++  ...|.+++-.+     +...|+.|+. ..|..||+.....++
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~F   87 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLF   87 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhh
Confidence            478899999999999977655444446677888887  45777776443     2467777654 589999998776655


Q ss_pred             eecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCCCeEEEEeCCC
Q 020454          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~dg~v~iwd~~~  246 (326)
                      .-.          .+..|.++.+-.-.+ ..-++..+.+..|.-||...
T Consensus        88 yke----------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   88 YKE----------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             hhh----------CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            421          123455665532111 12344445577777777663

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.47  E-value=0.098  Score=28.62  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=26.1

Q ss_pred             CceEEEEecCCC---CeEEEEcCCCcEEEEECCCC
Q 020454          259 TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       259 ~~i~~v~~s~~~---~~l~~g~~dg~v~iwd~~~~  290 (326)
                      +.+.++.|+|..   .+|+..-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368899999854   48888778899999999963

It contains a characteristic DLL sequence motif.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.45  E-value=1.5  Score=37.80  Aligned_cols=196  Identities=13%  Similarity=0.109  Sum_probs=113.6

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---CCcEEEEEcccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVT  143 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~  143 (326)
                      ..+....++.|.+.|..+.+.......        +. ...++.+.+        .++.+.++..   ++.+.+.|-...
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~v--------G~-~P~~~~~~~--------~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPV--------GL-GPVGLAVDP--------DGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeee--------cc-CCceEEECC--------CCCEEEEEecccCCceEEEEeCCCC
Confidence            455555579999999776666555543        11 233355433        4445555554   466666553322


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                      .        .+.. ......+ ..++++|+++.++... .++.|.+.|........ -.... .   .........+.+.
T Consensus       151 ~--------~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~-~---~~~~~~P~~i~v~  215 (381)
T COG3391         151 K--------VTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS-L---VGVGTGPAGIAVD  215 (381)
T ss_pred             e--------EEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc-c---cccCCCCceEEEC
Confidence            2        2222 1111223 8899999998665544 78899999976655543 11100 0   0011223466777


Q ss_pred             ecCCCcEEEEE-eCC--CeEEEEeCCCCCCceeE-EeecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEc
Q 020454          223 SIDDHRKFVAG-TND--HQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       223 p~~~~~~l~~~-~~d--g~v~iwd~~~~~~~~~~-~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~  297 (326)
                      |  ++..+.+. ..+  +.+...|..+. ..... ..........+..+|+|.++.+... .+.+.+.|..+.+....+.
T Consensus       216 ~--~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         216 P--DGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             C--CCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            7  44444333 333  68999998876 32222 2222114566789999999997744 4899999999887776654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.42  E-value=1.5  Score=37.41  Aligned_cols=218  Identities=15%  Similarity=0.124  Sum_probs=113.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceE-EEEEeeeCCCCCeEEEEec-C---CcEEEEecc--ccce
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCV-LAASIDDSQNDPLLAVARK-N---GLTDILNPL--NGDL   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~~-d---g~i~i~~~~--~~~~   87 (326)
                      .+++..+.++=+.|||+.++      ..+.+.. .+...+ +...+......--|++++. +   .+|++|.+.  ++.+
T Consensus        69 SlIigTdK~~GL~VYdL~Gk------~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L  141 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDGK------ELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL  141 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-------EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred             ceEEEEeCCCCEEEEcCCCc------EEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence            56788888889999999986      3333332 222222 2222222111111444443 2   469999775  3333


Q ss_pred             eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  167 (326)
                       ..+..... +.......+.+++.+....    ...-+.++...+|.+..|.+.....- ......+|.+.+  ...+..
T Consensus       142 -~~v~~~~~-p~~~~~~e~yGlcly~~~~----~g~~ya~v~~k~G~~~Qy~L~~~~~g-~v~~~lVR~f~~--~sQ~EG  212 (381)
T PF02333_consen  142 -TDVTDPAA-PIATDLSEPYGLCLYRSPS----TGALYAFVNGKDGRVEQYELTDDGDG-KVSATLVREFKV--GSQPEG  212 (381)
T ss_dssp             -EE-CBTTC--EE-SSSSEEEEEEEE-TT----T--EEEEEEETTSEEEEEEEEE-TTS-SEEEEEEEEEE---SS-EEE
T ss_pred             -eEcCCCCc-ccccccccceeeEEeecCC----CCcEEEEEecCCceEEEEEEEeCCCC-cEeeEEEEEecC--CCcceE
Confidence             22211000 0001223467777765321    01235677788899988887642210 012345777776  458999


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCc-----eeeeeecCCCCCCCCcCCCCceeeeEEeecC--CCcEEEEEeCCCeEE
Q 020454          168 SKVDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVR  240 (326)
Q Consensus       168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~~l~~~~~dg~v~  240 (326)
                      +..+.....|..|-++.-|.-|+.+..     +.+....+..       ....|-.++.-...  .+.+|++.-.+++..
T Consensus       213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~-------l~aDvEGlaly~~~~g~gYLivSsQG~~sf~  285 (381)
T PF02333_consen  213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG-------LVADVEGLALYYGSDGKGYLIVSSQGDNSFA  285 (381)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS-------B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred             EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc-------cccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence            999988889999999988888887632     2222222110       11346677765432  344555666688999


Q ss_pred             EEeCCCCCCceeEEe
Q 020454          241 LYDTSAQRRPVMSFD  255 (326)
Q Consensus       241 iwd~~~~~~~~~~~~  255 (326)
                      +||.......+..|.
T Consensus       286 Vy~r~~~~~~~g~f~  300 (381)
T PF02333_consen  286 VYDREGPNAYVGSFR  300 (381)
T ss_dssp             EEESSTT--EEEEEE
T ss_pred             EEecCCCCcccceEE
Confidence            999875434455554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.37  E-value=1.2  Score=38.94  Aligned_cols=112  Identities=17%  Similarity=0.229  Sum_probs=66.1

Q ss_pred             EEEEEcCCCCEEEEe-----cCCCeEEEEECCCceeeeee-cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----
Q 020454          166 AFSKVDISEKFSLFG-----GKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----  235 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg-----~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----  235 (326)
                      ..+.++|+++++|.+     +....|+++|+++++.+... ..           ..-..+.|.+  +++.|+....    
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-----------~~~~~~~W~~--d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-----------PKFSSVSWSD--DGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-----------EESEEEEECT--TSSEEEEEECSTTT
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-----------cccceEEEeC--CCCEEEEEEeCccc
Confidence            356789999988753     22245999999999765432 11           1112378887  3334444332    


Q ss_pred             -------CCeEEEEeCCCCCCc-eeEEeecCCc--eEEEEecCCCCeEEEEcCC----CcEEEEECCCC
Q 020454          236 -------DHQVRLYDTSAQRRP-VMSFDFRETP--IKAVAEEPDSFNIYIGNGS----GDLASVDIRTG  290 (326)
Q Consensus       236 -------dg~v~iwd~~~~~~~-~~~~~~~~~~--i~~v~~s~~~~~l~~g~~d----g~v~iwd~~~~  290 (326)
                             ...|+.|.+.+.... ...+......  ...+..++++++|+.....    ..+++.|+..+
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence                   234788887755221 2334433332  5678899999998843322    35888888874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.25  E-value=0.59  Score=39.83  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=26.9

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  198 (326)
                      ..+....|+|+++.++.. .++.|.+++..+++...
T Consensus        43 ~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQ   77 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEE
T ss_pred             cccccceeecCCCeeEEE-ecCceEEEECCCCCeEE
Confidence            467889999999998875 46799999988775443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.24  E-value=2.4  Score=38.78  Aligned_cols=191  Identities=16%  Similarity=0.185  Sum_probs=93.1

Q ss_pred             CeEEEEecC------CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           66 PLLAVARKN------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        66 ~~l~~g~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      .+.++|+.|      .++..||..+++... ...+.     .. ..-.+++..         .+...++|+.||.-.+-+
T Consensus       334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~-----~~-R~~~~v~~l---------~g~iYavGG~dg~~~l~s  397 (571)
T KOG4441|consen  334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMN-----TK-RSDFGVAVL---------DGKLYAVGGFDGEKSLNS  397 (571)
T ss_pred             EEEEEccccCCCcccceEEEecCCCCceec-cCCcc-----Cc-cccceeEEE---------CCEEEEEecccccccccc
Confidence            467888888      468888887776433 22111     11 111112221         345677777786544333


Q ss_pred             ccccccccccccceEEEEEccCCC--ceEEEE-EcCCCCEEEEecCCC------eEEEEECCCceeeeeecCCCCCCCCc
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASG--TIAFSK-VDISEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~-~~~~~~~l~sg~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      ++..+.       ....|.....-  ...... ..-++.+.++||.++      .+..||..+++-.....-.       
T Consensus       398 vE~YDp-------~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-------  463 (571)
T KOG4441|consen  398 VECYDP-------VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-------  463 (571)
T ss_pred             EEEecC-------CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-------
Confidence            222111       11223322111  111111 122577788888654      4667777665432221110       


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCC-----eEEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCCC----
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----  280 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg----  280 (326)
                       .+..-.+++..   ++.+.+.|+.|+     +|..||+.+.+- .+.........+-.+.+  ++...++|+.||    
T Consensus       464 -~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  464 -TRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL  537 (571)
T ss_pred             -cccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccc
Confidence             11111123333   555788888776     378899886521 11112222223333333  566677888776    


Q ss_pred             -cEEEEECCCCeE
Q 020454          281 -DLASVDIRTGKL  292 (326)
Q Consensus       281 -~v~iwd~~~~~~  292 (326)
                       +|..||..+.+.
T Consensus       538 ~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  538 NTVECYDPETDTW  550 (571)
T ss_pred             ceeEEcCCCCCce
Confidence             477777776654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.14  E-value=1.4  Score=35.42  Aligned_cols=129  Identities=13%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             EEEEEccCCCceEEEEEcCCCCEEEEecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (326)
Q Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~  231 (326)
                      ++.+......-...+.+..++.++-+.|.-|  .|+.+|+.+++......-...        -.--+++..   ++++..
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--------~FgEGit~~---~d~l~q  104 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--------YFGEGITIL---GDKLYQ  104 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE---TTEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--------ccceeEEEE---CCEEEE
Confidence            4444444445567888866788877777766  599999999987655433221        112244444   334666


Q ss_pred             EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      -.-.++...+||..+. +.+.++... ..=..++  .++..|+..+....++++|..+-+...++.
T Consensus       105 LTWk~~~~f~yd~~tl-~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTL-KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             EESSSSEEEEEETTTT-EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             EEecCCeEEEEccccc-eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence            6778999999999987 567777654 3445666  478888888888899999988765544443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.13  E-value=3.1  Score=39.50  Aligned_cols=272  Identities=14%  Similarity=0.136  Sum_probs=136.2

Q ss_pred             CeeeeeecCcccEEEEEec-CCc--CCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce---
Q 020454           14 PLRALTFDSLGLIKVIEAR-GEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---   87 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~---   87 (326)
                      .+|.+.+|++|.+.-.-+. .++  .+..--...+++..   ...+++..   ...+|++|+.-|.=++..+.+..-   
T Consensus       269 ~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~s---iassi~~L---~ng~lFvGS~~gdSqLi~L~~e~d~gs  342 (1096)
T KOG1897|consen  269 GSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETS---IASSINYL---DNGVLFVGSRFGDSQLIKLNTEPDVGS  342 (1096)
T ss_pred             ccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcc---hhhhhhcc---cCceEEEeccCCceeeEEccccCCCCc
Confidence            3889999999988655544 321  11100111222221   11122222   223699999988878877653322   


Q ss_pred             -eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe---cCCcEEEEEccccccccccccceEEEEEccCCC
Q 020454           88 -RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (326)
Q Consensus        88 -~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~---~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (326)
                       ...+..+      ..-+||..+...+.+.    ...+.+++|+   .||.+++..-...       -..+..-++....
T Consensus       343 y~~ilet~------~NLgPI~Dm~Vvd~d~----q~q~qivtCsGa~kdgSLRiiRngi~-------I~e~A~i~l~Gik  405 (1096)
T KOG1897|consen  343 YVVILETF------VNLGPIVDMCVVDLDR----QGQGQIVTCSGAFKDGSLRIIRNGIG-------IDELASIDLPGIK  405 (1096)
T ss_pred             hhhhhhhc------ccccceeeEEEEeccc----cCCceEEEEeCCCCCCcEEEEecccc-------cceeeEeecCCcc
Confidence             2222222      2226888887766432    1245788875   5788887763321       1112222333333


Q ss_pred             ceEEEE--EcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          164 TIAFSK--VDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       164 ~v~~~~--~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                      .++.++  ++++ .++|+.+-.+ .-++..+...  +.....+...       .....+..+-- .++.|+-.+ ...||
T Consensus       406 g~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e--~ee~~~~gf~-------~~~~Tif~S~i-~g~~lvQvT-s~~iR  473 (1096)
T KOG1897|consen  406 GMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEE--VEETEDPGFS-------TDEQTIFCSTI-NGNQLVQVT-SNSIR  473 (1096)
T ss_pred             ceeEeeccccccCCcEEEEEecc-ceEEEEEccc--eEEecccccc-------ccCceEEEEcc-CCceEEEEe-cccEE
Confidence            455555  3332 2455554433 3334444322  1111111000       11112222222 222333333 34578


Q ss_pred             EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCC--C----C
Q 020454          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT--L----P  314 (326)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~--~----~  314 (326)
                      +++-. +  .+..+..... ++....+.+...++.++.++.+...++..+.+....+...+..|.|++++|-  +    +
T Consensus       474 l~ss~-~--~~~~W~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~  549 (1096)
T KOG1897|consen  474 LVSSA-G--LRSEWRPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSR  549 (1096)
T ss_pred             EEcch-h--hhhcccCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcce
Confidence            88755 2  2445544433 3333334456678888888888888887766443333224778999999974  2    2


Q ss_pred             EEEEeccCcc
Q 020454          315 IIASCGFLEA  324 (326)
Q Consensus       315 ~l~s~s~D~~  324 (326)
                      +++.|.++..
T Consensus       550 ~~aVG~Ws~~  559 (1096)
T KOG1897|consen  550 LLAVGLWSDI  559 (1096)
T ss_pred             EEEEEeecce
Confidence            7787776653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.97  E-value=1.4  Score=37.85  Aligned_cols=143  Identities=13%  Similarity=0.050  Sum_probs=74.4

Q ss_pred             CceEEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--cee--eeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          163 GTIAFSKVDISEKFSLFGG-----------KGV-EVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~-----------~d~-~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                      .....|++.++|+++++-.           ..+ .|.+++-.+  ++.  ...+...      +   ...+.+++.+  +
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~------l---~~p~Gi~~~~--~   82 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE------L---SMVTGLAVAV--G   82 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC------C---CCccceeEec--C
Confidence            3566789999999877642           223 677766433  221  1111110      1   1245677765  4


Q ss_pred             CcEEEEEeCCCeEEEEeCCCC-----CC-ce-eEEeec----CCceEEEEecCCCCeEEEEcC-----------------
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQ-----RR-PV-MSFDFR----ETPIKAVAEEPDSFNIYIGNG-----------------  278 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~-----~~-~~-~~~~~~----~~~i~~v~~s~~~~~l~~g~~-----------------  278 (326)
                      + +++ ++.....++.|....     +. .+ ..+...    ......++|.|||.+.++-+.                 
T Consensus        83 G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        83 G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence            5 444 444443344454321     11 11 112221    244778999999976553331                 


Q ss_pred             --CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          279 --SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       279 --dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                        .|.|.-++..+++. ..+... ......++|+|++.++++-.
T Consensus       161 ~~~g~i~r~~pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCceEEEEecCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence              14456666655443 233322 23356899999998877643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=0.75  Score=40.21  Aligned_cols=83  Identities=14%  Similarity=0.075  Sum_probs=51.9

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEEC---------CCceeeeeecCCCCC--CCCcCCCCceeeeEEeecC--CCcEE
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDL---------DKCEKIWTAKPPPKN--SLGIFTPTWFTSAAFLSID--DHRKF  230 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~---------~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~--~~~~l  230 (326)
                      .|..+..++.|..++-.|.+|.+.++=.         +.++.+.........  ...-...-.+..++|+|..  |. .|
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~-hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP-HL  183 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc-eE
Confidence            3778889999999998899987665431         223332222211111  1101111256678899975  44 77


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 020454          231 VAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~  247 (326)
                      ..-+.|..+|+||+...
T Consensus       184 ~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEecCcEEEEEecCCc
Confidence            78888999999998754

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.82  E-value=0.77  Score=42.27  Aligned_cols=161  Identities=13%  Similarity=0.094  Sum_probs=89.4

Q ss_pred             eEEEEecCCcEEEEEcccccccc---------------ccccceEEEEEccCCCceEEEEEcC--CCCEEEEecCCCeEE
Q 020454          125 TLLTCTTKGKASMRSIEVTKVSA---------------ESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVN  187 (326)
Q Consensus       125 ~l~~~~~~g~v~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~  187 (326)
                      .+++ ...+.|.||+++......               ...++.+..|.  .+-.|+-|.+..  ....|+.+..||.|.
T Consensus        51 ~LFi-A~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p--~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   51 LLFI-AYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP--FPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             EEEE-EECCEEEEEecCCcccccccccccccccCccccccccccccCCC--CCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            4444 458889999876432211               01122222222  122355555443  447889999999999


Q ss_pred             EEECCCc-----ee---eeee--cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC--CCCceeEEe
Q 020454          188 VWDLDKC-----EK---IWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFD  255 (326)
Q Consensus       188 iwd~~~~-----~~---~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~  255 (326)
                      +|.+++-     +.   ....  .........+..+...-+++++.....+++|+++....|.||-...  .+.....-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            9987531     00   0000  0001111223344455577777333556888888888888876443  211111111


Q ss_pred             ecCCceEEEEecCCC-----C-eEEEEcCCCcEEEEECC
Q 020454          256 FRETPIKAVAEEPDS-----F-NIYIGNGSGDLASVDIR  288 (326)
Q Consensus       256 ~~~~~i~~v~~s~~~-----~-~l~~g~~dg~v~iwd~~  288 (326)
                      .+..-|.+|+|-++.     . .|++++-.|.+.+|++.
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            245678888887653     2 77789999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.68  E-value=0.77  Score=39.67  Aligned_cols=97  Identities=18%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             EEEEcCCCCEEEEecCCCeEEE---EECCC-c--eeeeeecCCCCCCCCcCCCCceeeeEEeec---------CCCcEEE
Q 020454          167 FSKVDISEKFSLFGGKGVEVNV---WDLDK-C--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI---------DDHRKFV  231 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~i---wd~~~-~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------~~~~~l~  231 (326)
                      .++.+|++++|+.+..+..+.+   |+... +  ...+...-..  .+.......|+++.+.|-         .+...++
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g--~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~   83 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSG--PLDDEPGECITSILCLPLSSQKRSTGGPDWTCIA   83 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeee--eccCCCCCEEEEEEEEEeecccccCCCCCcEEEE
Confidence            4678899999999888777655   64421 1  1112211110  000101146888888775         3456899


Q ss_pred             EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (326)
Q Consensus       232 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s  267 (326)
                      +|..+|.|++|... + ..+..-..|+.+|..+...
T Consensus        84 VG~ssG~vrfyte~-G-~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   84 VGTSSGYVRFYTEN-G-VLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEecccEEEEEecc-c-hHHHHHhcCccceEEEEec
Confidence            99999999999975 3 2344444566777776654

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.65  E-value=0.27  Score=44.78  Aligned_cols=96  Identities=15%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             ceeeeEEeecCCCcEEEEEe------CCC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC-------
Q 020454          215 WFTSAAFLSIDDHRKFVAGT------NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-------  279 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-------  279 (326)
                      .+.+.+++|  +++.++...      .|.  .+.+++...  .. ..+... ...+.-.|+|+|..|++....       
T Consensus       351 ~vsspaiSp--dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        351 NITSAALSR--SGRQVAAVVTLGRGAPDPASSLWVGPLGG--VA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             CcccceECC--CCCEEEEEEeecCCCCCcceEEEEEeCCC--cc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEe
Confidence            466778888  455555443      243  455555432  22 333222 237788999998877765432       


Q ss_pred             -----CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       280 -----g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                           +.+.+.++..++...   . ..+.|.++.|+|||..|+...
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~-~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---R-VPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---c-cCCCcCeEEECCCCCEEEEEE
Confidence                 233333444333322   2 256799999999999777643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.42  E-value=0.98  Score=36.34  Aligned_cols=101  Identities=16%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             eeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEeecCC--ceEEEEecCCCCeEEEEcCC-----CcEEEEECC
Q 020454          217 TSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS-----GDLASVDIR  288 (326)
Q Consensus       217 ~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~  288 (326)
                      ..++|+|.. ..-++.+-.-| ...++|......++ .+...+.  -.-.=.|||||.+|++.-.|     |.|-|||.+
T Consensus        71 Hgi~~~p~~-~ravafARrPGtf~~vfD~~~~~~pv-~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          71 HGIAFHPAL-PRAVAFARRPGTFAMVFDPNGAQEPV-TLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             CCeecCCCC-cceEEEEecCCceEEEECCCCCcCcE-EEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            355666653 33444444444 46788888664443 3222111  11123699999999965333     789999998


Q ss_pred             CC-eEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          289 TG-KLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       289 ~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      .+ ..+.+|..| .-.-..+.|.+||+.|+.+.
T Consensus       149 ~~fqrvgE~~t~-GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         149 EGFQRVGEFSTH-GIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cccceecccccC-CcCcceeEEecCCcEEEEeC
Confidence            54 345677776 65667889999999887664

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.21  E-value=2.1  Score=33.49  Aligned_cols=95  Identities=14%  Similarity=0.129  Sum_probs=63.1

Q ss_pred             EEEEEcCCCCEE-EEecCCCeEEEEE--CCCc-----eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454          166 AFSKVDISEKFS-LFGGKGVEVNVWD--LDKC-----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (326)
Q Consensus       166 ~~~~~~~~~~~l-~sg~~d~~i~iwd--~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg  237 (326)
                      +.++|+.+.+.+ ++-+.+-+|.-||  ..++     +.++.++..+...  ...|.   .++..  .+|++++++-..+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e--~~~PD---Gm~ID--~eG~L~Va~~ng~  233 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE--SLEPD---GMTID--TEGNLYVATFNGG  233 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC--CCCCC---cceEc--cCCcEEEEEecCc
Confidence            467787766544 5566777787888  4444     3455554432111  11111   22332  2677888888899


Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEecC
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP  268 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~  268 (326)
                      +|...|+.++ +.+.++......|+++||--
T Consensus       234 ~V~~~dp~tG-K~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  234 TVQKVDPTTG-KILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEEEECCCCC-cEEEEEEcCCCceEEEEecC
Confidence            9999999998 56889998899999999953

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.16  E-value=2.4  Score=34.01  Aligned_cols=172  Identities=14%  Similarity=0.087  Sum_probs=95.9

Q ss_pred             CceEEEEecCCc--EEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454          123 SRTLLTCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       123 ~~~l~~~~~~g~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  200 (326)
                      +..+-+.+.-|.  |+.+++....        ..+...+...---..+....+ ++..-.=.++...+||..+-+.+.++
T Consensus        56 g~LyESTG~yG~S~l~~~d~~tg~--------~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~  126 (264)
T PF05096_consen   56 GTLYESTGLYGQSSLRKVDLETGK--------VLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTF  126 (264)
T ss_dssp             TEEEEEECSTTEEEEEEEETTTSS--------EEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEeCCCCCcEEEEEEECCCCc--------EEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEEE
Confidence            345556666664  4444443322        333333333333334555533 33334478899999999988877765


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-----CCceEEEEecCCCCeEEE
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYI  275 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~i~~v~~s~~~~~l~~  275 (326)
                      .-.. +       .|  .++.    ++..|+......+++++|+.+. +...++...     -..++.+.|- +|...|=
T Consensus       127 ~y~~-E-------GW--GLt~----dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN  190 (264)
T PF05096_consen  127 PYPG-E-------GW--GLTS----DGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN  190 (264)
T ss_dssp             E-SS-S-----------EEEE----CSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred             ecCC-c-------ce--EEEc----CCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence            4432 2       22  3332    4556777777889999999876 445555432     1246667775 6666665


Q ss_pred             EcCCCcEEEEECCCCeEEEEEcce--------------ecceEEEEEECCCCCEEEEe
Q 020454          276 GNGSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       276 g~~dg~v~iwd~~~~~~~~~~~~~--------------~~~~v~~l~~~p~~~~l~s~  319 (326)
                      --....|...|..+|++...+...              ...-.+.||++|....|...
T Consensus       191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            556678999999999988765310              02347899999866544443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.15  E-value=0.28  Score=26.84  Aligned_cols=30  Identities=10%  Similarity=0.122  Sum_probs=25.2

Q ss_pred             ceEEEEEcCCC---CEEEEecCCCeEEEEECCC
Q 020454          164 TIAFSKVDISE---KFSLFGGKGVEVNVWDLDK  193 (326)
Q Consensus       164 ~v~~~~~~~~~---~~l~sg~~d~~i~iwd~~~  193 (326)
                      .+.+++|+|+.   .+|+.+-.-+.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.52  E-value=3  Score=34.48  Aligned_cols=103  Identities=17%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC-CCeEE
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLL  293 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~~~~  293 (326)
                      .+..+..++  ++.+++++..-....-||.-.. .-...-......|..|.|.|++...+.+ ..|.|++=+.. ..+.-
T Consensus       146 s~~~~~r~~--dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  146 SINDITRSS--DGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             -EEEEEE-T--TS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             eeEeEEECC--CCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            355555544  7777777776666678886532 1111122345789999999998776654 88888888722 22221


Q ss_pred             EE--Ecce-ecceEEEEEECCCCCEEEEecc
Q 020454          294 GC--FIGK-CSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       294 ~~--~~~~-~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ..  .+.. ..-.+..++|.+++.+.++|+.
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            11  1110 0224789999998888887764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.25  E-value=0.58  Score=36.72  Aligned_cols=67  Identities=12%  Similarity=0.114  Sum_probs=47.2

Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCceeE------Ee-------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMS------FD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~------~~-------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      .++++++.+.+|.+++||+.+.+..+..      +.       .....|..+.++.+|.-|++- .+|..+.|+..-+..
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~~W   99 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLGCW   99 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccccee
Confidence            4458999999999999999976332111      11       244678888999888777654 467899998775543


Q ss_pred             E
Q 020454          293 L  293 (326)
Q Consensus       293 ~  293 (326)
                      +
T Consensus       100 ~  100 (219)
T PF07569_consen  100 I  100 (219)
T ss_pred             E
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.13  E-value=1.2  Score=38.93  Aligned_cols=131  Identities=14%  Similarity=0.096  Sum_probs=79.2

Q ss_pred             EEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC-----cEEEEEeCCCeEEEEeCCCCCCce
Q 020454          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-----RKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       177 l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-----~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      +..|+....++--|++.|+.+...+.+...           -+.|.|....     ..-++|-.+..|.-.|+|.....+
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv-----------vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV-----------VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc-----------eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence            345666677888888888887766554332           2344443111     123445556667777887542223


Q ss_pred             eEEeec----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          252 MSFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       252 ~~~~~~----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ...+..    .....+..- ....+|++|+..|-|++||--.-+....+++- ...|..|....+|.+|++.+
T Consensus       552 ~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~l-G~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGL-GDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             eeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCccc-ccceeeeEeecCCcEEEEee
Confidence            222221    122233222 23459999999999999996554444556664 77899999999998765543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.97  E-value=0.7  Score=24.96  Aligned_cols=31  Identities=29%  Similarity=0.551  Sum_probs=24.5

Q ss_pred             CCCCeEEEEc-CCCcEEEEECCCCeEEEEEcc
Q 020454          268 PDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       268 ~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5777777655 578999999999988887763

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.93  E-value=5.8  Score=34.48  Aligned_cols=81  Identities=15%  Similarity=0.041  Sum_probs=49.1

Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC-ce---EEEEec-------------CC-CCeEE-E
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-PI---KAVAEE-------------PD-SFNIY-I  275 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~i---~~v~~s-------------~~-~~~l~-~  275 (326)
                      .+.++..+|  .+++.++...-|+|.++|+... ..++.+++-.. .+   ....-.             +. ..+|+ =
T Consensus       309 ~~~~i~~sP--~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  309 EGESICLSP--SGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             eEEEEEECC--CCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            456677777  4657777777789999999876 44555543211 11   100000             00 12333 4


Q ss_pred             EcCCCcEEEEECCCCeEEEEEcc
Q 020454          276 GNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       276 g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      .-.-|.|.||.+++|..+..+..
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEEe
Confidence            45678999999999888877653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.79  E-value=0.014  Score=49.88  Aligned_cols=142  Identities=11%  Similarity=0.044  Sum_probs=91.6

Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      ...|-+.+.-++.++.+..+..||-........  +.+..         .-.++|.-. ....++.+-..+.+.+||+.+
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~--n~tg~---------aldm~wDke-gdvlavlAek~~piylwd~n~  106 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILEL--NPTGK---------ALDMAWDKE-GDVLAVLAEKTGPIYLWDVNS  106 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcceeccc--CCchh---------Hhhhhhccc-cchhhhhhhcCCCeeechhhh
Confidence            344556665588888888899998543322211  11111         223344431 222455667788999999885


Q ss_pred             CCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          247 QRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       247 ~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      ..  ..+++. ....-.-+.|++....++.|...|.+.|++..+.+..-..-.| ..++.+++|.+.+ +.+.++.|..
T Consensus       107 ey--tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~lEd-~vil~dcd~~  181 (615)
T KOG2247|consen  107 EY--TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTLED-YVILCDCDNT  181 (615)
T ss_pred             hh--HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecccc-eeeecCcHHH
Confidence            42  233332 1222222679999999999999999999999887766544446 8899999999876 5667777754

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=92.63  E-value=12  Score=37.23  Aligned_cols=75  Identities=21%  Similarity=0.422  Sum_probs=48.6

Q ss_pred             cccCCCCCCC----ee-----eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCC
Q 020454            5 TTLECPGCPP----LR-----ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG   75 (326)
Q Consensus         5 ~~~~~~~~~~----~~-----l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg   75 (326)
                      ..++|+.|..    .+     .++...||.+.|=|.+        .+.+.........++.+.....+-.=++|+.-.||
T Consensus       348 R~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN--------yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg  419 (1899)
T KOG4659|consen  348 RDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN--------YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG  419 (1899)
T ss_pred             ccccCCCCCCccccceeeceeeEEEcCCCcEEEccch--------heeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence            4578888876    22     4567889998887765        22233333444555555544433344789999999


Q ss_pred             cEEEEeccccce
Q 020454           76 LTDILNPLNGDL   87 (326)
Q Consensus        76 ~i~i~~~~~~~~   87 (326)
                      ++.|=|..+.++
T Consensus       420 tlyvSdp~s~qv  431 (1899)
T KOG4659|consen  420 TLYVSDPLSKQV  431 (1899)
T ss_pred             eEEecCCCcceE
Confidence            999988866555

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.59  E-value=0.7  Score=24.61  Aligned_cols=30  Identities=23%  Similarity=0.183  Sum_probs=20.1

Q ss_pred             ecCCceEEEEecCCCCeEE-EEcCC--CcEEEE
Q 020454          256 FRETPIKAVAEEPDSFNIY-IGNGS--GDLASV  285 (326)
Q Consensus       256 ~~~~~i~~v~~s~~~~~l~-~g~~d--g~v~iw  285 (326)
                      ..........|+|||++|+ ++..+  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445567789999999887 55566  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.51  E-value=10  Score=36.26  Aligned_cols=150  Identities=14%  Similarity=0.147  Sum_probs=89.9

Q ss_pred             EEEEEccCCCceEEEEEc---C----CCCEEEEecCCCeEEEEECCCcee---------------eeeecCCCCCCCCcC
Q 020454          154 VKSWNVCASGTIAFSKVD---I----SEKFSLFGGKGVEVNVWDLDKCEK---------------IWTAKPPPKNSLGIF  211 (326)
Q Consensus       154 ~~~~~~~~~~~v~~~~~~---~----~~~~l~sg~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~  211 (326)
                      -..|.+....+|..+.|.   .    ..++|++- ....+.|+...-.+.               +..+.....      
T Consensus        71 ~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t------  143 (765)
T PF10214_consen   71 SGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT------  143 (765)
T ss_pred             cceeEcCCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhc------
Confidence            345776778899999988   2    22577664 445677777322211               111111110      


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-C--CceeEEe-ec----------CCceEEEEecCCCCeEEEEc
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-R--RPVMSFD-FR----------ETPIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-~--~~~~~~~-~~----------~~~i~~v~~s~~~~~l~~g~  277 (326)
                      .......++|+|... ..||+....|...|||+... +  ....... ..          ......+.|.++-+.|++.+
T Consensus       144 gg~~~aDv~FnP~~~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~  222 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQ-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN  222 (765)
T ss_pred             CCCccceEEeccCcc-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence            112466889999754 48999999999999999211 0  1111111 11          12334788988888888866


Q ss_pred             CCCcEEEEECCCCeEEE-EEcceecceEEEEEECCC
Q 020454          278 GSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       278 ~dg~v~iwd~~~~~~~~-~~~~~~~~~v~~l~~~p~  312 (326)
                      .. .+.++|+++..... .........|..+.-+|.
T Consensus       223 r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  223 RS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             CC-ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence            55 78999999876533 222112557777777776

These proteins are found in fungi.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.30  E-value=4.9  Score=32.08  Aligned_cols=145  Identities=14%  Similarity=0.192  Sum_probs=78.0

Q ss_pred             EEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC---CeEEEEECCC--ceeeeeecCCCCCCCCc
Q 020454          136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDK--CEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~--~~~~~~~~~~~~~~~~~  210 (326)
                      .+||+...         +++-..+....-+..=.+-++|++|.+||..   ..+++++...  ....+....     ..+
T Consensus        49 ~~yD~~tn---------~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~-----~~m  114 (243)
T PF07250_consen   49 VEYDPNTN---------TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESP-----NDM  114 (243)
T ss_pred             EEEecCCC---------cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECc-----ccc
Confidence            46776543         2333333333334444577899999998863   3377777543  011111100     113


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEee--------cCCceEEEEecCCCCeEEEEcCCCc
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDF--------RETPIKAVAEEPDSFNIYIGNGSGD  281 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~--------~~~~i~~v~~s~~~~~l~~g~~dg~  281 (326)
                      ..+.|-.+....|  +|+.|+.|+... +..+|..+........+..        ....--.+-..|+|+.++.+..+  
T Consensus       115 ~~~RWYpT~~~L~--DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--  190 (243)
T PF07250_consen  115 QSGRWYPTATTLP--DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--  190 (243)
T ss_pred             cCCCccccceECC--CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--
Confidence            3445655666666  677888887664 4455554321111111110        11122234566999999888765  


Q ss_pred             EEEEECCCCeEEEEEcc
Q 020454          282 LASVDIRTGKLLGCFIG  298 (326)
Q Consensus       282 v~iwd~~~~~~~~~~~~  298 (326)
                      -.|||..+.+.++.++.
T Consensus       191 s~i~d~~~n~v~~~lP~  207 (243)
T PF07250_consen  191 SIIYDYKTNTVVRTLPD  207 (243)
T ss_pred             cEEEeCCCCeEEeeCCC
Confidence            45578888877766653

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.20  E-value=3.6  Score=39.78  Aligned_cols=135  Identities=9%  Similarity=-0.066  Sum_probs=76.5

Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEc--cCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  205 (326)
                      .+.+-.|..||+.......-.....++.-..  .......++.|+|.- ...+....|+.|++..+........      
T Consensus       120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~------  193 (1405)
T KOG3630|consen  120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT------  193 (1405)
T ss_pred             ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc------
Confidence            3343466778876533211111222221111  112346678888864 4455667888888876653222111      


Q ss_pred             CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEee-cCCceEEEEecCCCCeEE
Q 020454          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDF-RETPIKAVAEEPDSFNIY  274 (326)
Q Consensus       206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~-~~~~i~~v~~s~~~~~l~  274 (326)
                         .+.....+++++|+|  .|+.++.|-..|++.-|...-.. ..+..... ....|.+|+|-....+++
T Consensus       194 ---s~p~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  194 ---SFPVTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             ---ccCcccceeeEEecc--ccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence               112234578999998  57799999999999999865321 11111111 247899999976655555

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.44  E-value=7.9  Score=32.71  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=41.9

Q ss_pred             CceEEEEecC-------CCCeEEEEcCCCcEEEEECCCCeEEE---EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLG---CFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       259 ~~i~~v~~s~-------~~~~l~~g~~dg~v~iwd~~~~~~~~---~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..+..+.|-.       +|.++++.-..+.|....+..+..+.   .+-.....++..|++.|||.+.++-..+|.+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI  329 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence            4566666653       35566666667788888887553322   2222214489999999999998888877753

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.32  E-value=9.3  Score=35.37  Aligned_cols=37  Identities=11%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~  199 (326)
                      +.+..+.++|+.++|+--...|.|.+-+....+....
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence            3577888999999998888888988887765555444

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.26  E-value=1.5  Score=40.00  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=42.3

Q ss_pred             cEEEEEeCCCeEEEEeCCC---CCCceeEEe----------------------ecCCceEEEEecC----CCCeEEEEcC
Q 020454          228 RKFVAGTNDHQVRLYDTSA---QRRPVMSFD----------------------FRETPIKAVAEEP----DSFNIYIGNG  278 (326)
Q Consensus       228 ~~l~~~~~dg~v~iwd~~~---~~~~~~~~~----------------------~~~~~i~~v~~s~----~~~~l~~g~~  278 (326)
                      ..++.+..||.+.......   .........                      ........+++++    +..++++-+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            3778888889888777553   111111111                      0123455566666    6789999999


Q ss_pred             CCcEEEEECCCCeEEEEE
Q 020454          279 SGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       279 dg~v~iwd~~~~~~~~~~  296 (326)
                      |+.+++||+.+++++...
T Consensus       239 D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  239 DHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TSEEEEEETTTTCEEEEE
T ss_pred             CCeEEEEECCCCeEEEEe
Confidence            999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.25  E-value=14  Score=35.24  Aligned_cols=200  Identities=12%  Similarity=0.060  Sum_probs=105.1

Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE--EEEEcCCCCEEEEecCC---CeEEEEECCC--c--
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA--FSKVDISEKFSLFGGKG---VEVNVWDLDK--C--  194 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~sg~~d---~~i~iwd~~~--~--  194 (326)
                      .-+++...+|.+.+|-.+............++.. ......|.  ++++..+|+.++.+..+   +.|++|.+.-  +  
T Consensus        63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~-~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~  141 (753)
T PF11635_consen   63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESL-GSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAK  141 (753)
T ss_pred             eEEEEEecCCeEEEEEEcCCCccceeehhhhccc-cccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCc
Confidence            4688999999999998743221111100000000 00123344  44444566555544444   7788876531  1  


Q ss_pred             e--------eeeeecCCCCCC-CCcC-----------CCCceeeeEEee----cCC-CcEEEEEeC----CCeEEEEeCC
Q 020454          195 E--------KIWTAKPPPKNS-LGIF-----------TPTWFTSAAFLS----IDD-HRKFVAGTN----DHQVRLYDTS  245 (326)
Q Consensus       195 ~--------~~~~~~~~~~~~-~~~~-----------~~~~v~~~~~~p----~~~-~~~l~~~~~----dg~v~iwd~~  245 (326)
                      +        +...+....... ....           ....++.+.|.+    .+. ...+++.+.    ...|.-|.++
T Consensus       142 ~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~  221 (753)
T PF11635_consen  142 PQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELR  221 (753)
T ss_pred             CccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEE
Confidence            0        111111110000 0000           112566777776    222 224444432    3479999987


Q ss_pred             CCCCceeEE--------------------e-----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE----
Q 020454          246 AQRRPVMSF--------------------D-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----  296 (326)
Q Consensus       246 ~~~~~~~~~--------------------~-----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~----  296 (326)
                      ....+++..                    .     .....|.+++...-+.+++....||+|.++|-.+.+.+...    
T Consensus       222 ~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~  301 (753)
T PF11635_consen  222 EEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNG  301 (753)
T ss_pred             ccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence            542322111                    1     11246777777667889999999999999998876544333    


Q ss_pred             c-----------ce---ecceEEEEEECCCCCEEEEeccCcc
Q 020454          297 I-----------GK---CSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       297 ~-----------~~---~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .           |.   +..++..++|+|.+-.++.-..||.
T Consensus       302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~  343 (753)
T PF11635_consen  302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGK  343 (753)
T ss_pred             CCccccccccccccccccCCCCceEEECcccceEEEEecCCC
Confidence            1           00   1123446789999888888777765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.79  E-value=15  Score=34.71  Aligned_cols=74  Identities=12%  Similarity=-0.021  Sum_probs=48.7

Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---------CC--ceeEEe--------ecCCceEEEEecCC---CCe
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---------RR--PVMSFD--------FRETPIKAVAEEPD---SFN  272 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~---------~~--~~~~~~--------~~~~~i~~v~~s~~---~~~  272 (326)
                      .|..+..+|  +|.+++..+..|.+.+.=++..         +.  ...++.        .....|..+.|+|.   +.+
T Consensus        86 ~v~~i~~n~--~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNP--TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECC--CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            577777777  5667887776664444333211         11  111221        22347889999997   589


Q ss_pred             EEEEcCCCcEEEEECCCC
Q 020454          273 IYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       273 l~~g~~dg~v~iwd~~~~  290 (326)
                      |++-+.|+++++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.70  E-value=7.7  Score=31.30  Aligned_cols=100  Identities=17%  Similarity=0.113  Sum_probs=58.8

Q ss_pred             ceeeeEEeecCCCcEEEEEe---CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE-CCCC
Q 020454          215 WFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD-IRTG  290 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd-~~~~  290 (326)
                      .+.+.+.++  ++..++...   ....++++....  . ..... ....++.-.|++++...+....+...+++. ..++
T Consensus        25 ~~~s~AvS~--dg~~~A~v~~~~~~~~L~~~~~~~--~-~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSP--DGSRVAAVSEGDGGRSLYVGPAGG--P-VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECC--CCCeEEEEEEcCCCCEEEEEcCCC--c-ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            356778887  444555444   333455554332  2 22221 223678889999988777777777777774 3333


Q ss_pred             eEE-EEEcce-ecceEEEEEECCCCCEEEEec
Q 020454          291 KLL-GCFIGK-CSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       291 ~~~-~~~~~~-~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      +.. ..+... ..+.|..+.++|||..+|...
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence            322 122211 122899999999998777665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.67  E-value=11  Score=33.24  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       229 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ++|+++.-|-|++||--.. +.-.-+.+-...|..+..+.+|.+|++.+.. .+-+-|++
T Consensus       575 yIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         575 YIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             eEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            9999999999999995422 2223444556778888899999999877765 67777765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.66  E-value=6.8  Score=34.65  Aligned_cols=81  Identities=7%  Similarity=-0.102  Sum_probs=50.6

Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC--------Cc-e--eEEe------e--cCCceEEEEecCCC---Ce
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--------RP-V--MSFD------F--RETPIKAVAEEPDS---FN  272 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~--------~~-~--~~~~------~--~~~~i~~v~~s~~~---~~  272 (326)
                      .|..+..++  .|..++-.+.+|.+.++=.+...        ++ +  +++.      .  ..-.+..++|+|+.   ..
T Consensus       105 eV~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            456666665  56678888888977766533221        11 1  1111      0  11145677899984   67


Q ss_pred             EEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          273 IYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       273 l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      +..-+.|+.|++||+...+.++...
T Consensus       183 L~iL~sdnviRiy~lS~~telylqp  207 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTELYLQP  207 (741)
T ss_pred             EEEEecCcEEEEEecCCcchhhccC
Confidence            8888899999999998766554433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.45  E-value=9.1  Score=31.74  Aligned_cols=148  Identities=16%  Similarity=0.158  Sum_probs=72.3

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      ...+..+...+++++++++.......-||--  +..+...+..       ....|.++.|.|+  +.+.+ ....|.|+.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~-------~~~riq~~gf~~~--~~lw~-~~~Gg~~~~  211 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRN-------SSRRIQSMGFSPD--GNLWM-LARGGQIQF  211 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE---------SSS-EEEEEE-TT--S-EEE-EETTTEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccC-------ccceehhceecCC--CCEEE-EeCCcEEEE
Confidence            4568888889999999998777777778743  2222211111       1246889999984  43444 448899988


Q ss_pred             EeCCCC----CCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc--eecceEEEEEECCCCCE
Q 020454          242 YDTSAQ----RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLPI  315 (326)
Q Consensus       242 wd~~~~----~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~  315 (326)
                      =+....    .+++.........+..++|.+++...++|+. |.+ +.....|+-=.+.+.  ........|.|.+..+-
T Consensus       212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g  289 (302)
T PF14870_consen  212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG  289 (302)
T ss_dssp             EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred             ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence            872211    0111111123345889999988776666554 433 334455554444432  12445778888755433


Q ss_pred             EEEeccCcc
Q 020454          316 IASCGFLEA  324 (326)
Q Consensus       316 l~s~s~D~~  324 (326)
                       +..|.||.
T Consensus       290 -f~lG~~G~  297 (302)
T PF14870_consen  290 -FVLGQDGV  297 (302)
T ss_dssp             -EEE-STTE
T ss_pred             -EEECCCcE
Confidence             34455654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.19  E-value=9  Score=31.26  Aligned_cols=196  Identities=12%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             CCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC
Q 020454          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG  183 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d  183 (326)
                      ..+.++.+.+        ++++|++......-.++= ....       ..++...+..-.....+.+..+++++++--.+
T Consensus        86 ~nvS~LTynp--------~~rtLFav~n~p~~iVEl-t~~G-------dlirtiPL~g~~DpE~Ieyig~n~fvi~dER~  149 (316)
T COG3204          86 ANVSSLTYNP--------DTRTLFAVTNKPAAIVEL-TKEG-------DLIRTIPLTGFSDPETIEYIGGNQFVIVDERD  149 (316)
T ss_pred             ccccceeeCC--------CcceEEEecCCCceEEEE-ecCC-------ceEEEecccccCChhHeEEecCCEEEEEehhc
Confidence            4588888755        567788777776655442 2211       13444333333445567777777888887788


Q ss_pred             CeEEEEECCCceeeeeecCCCCCCCCcCC-CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce--eEEe-----
Q 020454          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFD-----  255 (326)
Q Consensus       184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~-----  255 (326)
                      +.+.++.+.....+...+......-.... ....-+++|.|.+ + .|+..-.-.-+.||........+  ....     
T Consensus       150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-H-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-c-eEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence            88988887765433332221000000000 2345688999853 3 55665555656666654321111  1110     


Q ss_pred             --ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc---ce--e---cceEEEEEECCCCCEEEE
Q 020454          256 --FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI---GK--C---SGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       256 --~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~---~~--~---~~~v~~l~~~p~~~~l~s  318 (326)
                        ..-..+.++.|++. +..++-+.+++.+.-.|.. |+++..+.   +.  .   -..-..|+..++|.+-++
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence              11235777888865 6677778888888888876 44333322   11  0   112446788877764443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.15  E-value=1.3  Score=41.56  Aligned_cols=172  Identities=12%  Similarity=0.103  Sum_probs=88.8

Q ss_pred             CCCCCCCeeeeeecCcccEEEEEecCCcCCCc-ceeeecc--CCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc
Q 020454            8 ECPGCPPLRALTFDSLGLIKVIEARGEHGGVP-KVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (326)
Q Consensus         8 ~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~   84 (326)
                      ....||..+    .+-|.+-||++.--..++. .+.....  .......++++-+....  -++..+-.+|+|++.+..+
T Consensus       141 ah~~~pk~~----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~--~~ic~~~~~~~i~lL~~~r  214 (1283)
T KOG1916|consen  141 AHTKCPKGR----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK--VYICYGLKGGEIRLLNINR  214 (1283)
T ss_pred             cccCChHHH----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc--ceeeeccCCCceeEeeech
Confidence            334566655    6668888999753211111 1111111  12233455555554443  3788899999999998854


Q ss_pred             cceeeeecccCCCCCCCCCCCeeeeeccccccc---ccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC
Q 020454           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE---ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA  161 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~---~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~  161 (326)
                      ... ..+.        .|...++.++++...-.   ..+.++..++....||.+.+|.+-..+.   ..-..+..|+...
T Consensus       215 a~~-~l~r--------sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~---~~~rclhewkphd  282 (1283)
T KOG1916|consen  215 ALR-SLFR--------SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK---IVHRCLHEWKPHD  282 (1283)
T ss_pred             HHH-HHHH--------hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc---ccHhhhhccCCCC
Confidence            433 2222        34445555555543220   1133556677777888887776543221   1123445566655


Q ss_pred             CCceEEEEEcCCC---------CEEEEecC-CCeEEEEECCCceee
Q 020454          162 SGTIAFSKVDISE---------KFSLFGGK-GVEVNVWDLDKCEKI  197 (326)
Q Consensus       162 ~~~v~~~~~~~~~---------~~l~sg~~-d~~i~iwd~~~~~~~  197 (326)
                      +.+-.|.-++.+.         .++++++. +..+++|....-+++
T Consensus       283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            4444444455432         23444443 344788876554443

>smart00564 PQQ beta-propeller repeat

Probab=89.64  E-value=1.1  Score=22.69  Aligned_cols=26  Identities=31%  Similarity=0.664  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          271 FNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       271 ~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      ..+++++.+|.++.+|.++|+.+.++
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            36788899999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.46  E-value=1.3  Score=23.45  Aligned_cols=27  Identities=37%  Similarity=0.626  Sum_probs=23.5

Q ss_pred             eEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          272 NIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       272 ~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      .+++++.+|.|+-+|.++|+.+-+++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            466779999999999999999988763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.45  E-value=2.8  Score=32.94  Aligned_cols=77  Identities=16%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC------cCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG------IFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~~l~~~~~dg  237 (326)
                      ++..+.  .++++|++-..+|.+++||+.+++.+........ .+.      -.....|..+....  +|.-+++-+ +|
T Consensus        14 ~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng   87 (219)
T PF07569_consen   14 PVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NG   87 (219)
T ss_pred             ceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CC
Confidence            344443  3678888889999999999999876554311100 000      02234566666663  554555544 57


Q ss_pred             eEEEEeCCC
Q 020454          238 QVRLYDTSA  246 (326)
Q Consensus       238 ~v~iwd~~~  246 (326)
                      ..+.|+..-
T Consensus        88 ~~y~y~~~L   96 (219)
T PF07569_consen   88 DSYSYSPDL   96 (219)
T ss_pred             CEEEecccc
Confidence            788888663

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03098 kelch-like protein; Provisional

Probab=89.15  E-value=17  Score=33.03  Aligned_cols=135  Identities=14%  Similarity=0.066  Sum_probs=62.6

Q ss_pred             CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC------CeEEE
Q 020454          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRL  241 (326)
Q Consensus       173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d------g~v~i  241 (326)
                      ++++++.||.+     ..+..||..+.+-... ..       +..+..-.+++..   ++++++.|+.+      ..+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~-------lp~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~v~~  410 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREE-PP-------LIFPRYNPCVVNV---NNLIYVIGGISKNDELLKTVEC  410 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CC-------cCcCCccceEEEE---CCEEEEECCcCCCCcccceEEE
Confidence            56777888876     3466777765432211 11       1111111122222   45566666632      46888


Q ss_pred             EeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCC--------CcEEEEECCCCeEEEE--EcceecceEEEEEEC
Q 020454          242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH  310 (326)
Q Consensus       242 wd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d--------g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~  310 (326)
                      ||+.+..- .+..+.........+.  .++...+.|+.+        ..+.+||..+++....  +... ......+.+ 
T Consensus       411 yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~-  486 (534)
T PHA03098        411 FSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF-  486 (534)
T ss_pred             EeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE-
Confidence            99875411 1111111111112222  245556666543        2388999887654321  1111 111112222 


Q ss_pred             CCCCEEEEeccCc
Q 020454          311 PTLPIIASCGFLE  323 (326)
Q Consensus       311 p~~~~l~s~s~D~  323 (326)
                       ++.+++.||.++
T Consensus       487 -~~~iyv~GG~~~  498 (534)
T PHA03098        487 -NNKIYVVGGDKY  498 (534)
T ss_pred             -CCEEEEEcCCcC
Confidence             667777777653

>PHA03098 kelch-like protein; Provisional

Probab=89.09  E-value=17  Score=33.00  Aligned_cols=107  Identities=16%  Similarity=0.244  Sum_probs=52.4

Q ss_pred             CCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC--------Ce
Q 020454          173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQ  238 (326)
Q Consensus       173 ~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d--------g~  238 (326)
                      ++++.+.||.+      +.+..||..+.+-... ...+       .+..-.++...   ++.+++.|+.+        ..
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~  457 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLP-------ISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNI  457 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCC-------ccccCceEEEE---CCEEEEECCccCCCCCcccce
Confidence            56777777742      4578888876542211 1111       01111122222   44466666542        23


Q ss_pred             EEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeE
Q 020454          239 VRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL  292 (326)
Q Consensus       239 v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~  292 (326)
                      +.+||+.+.+- .+............+.+  +++.++.|+.+     +.+.+||..+.+.
T Consensus       458 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        458 VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            88899875421 11111111111122223  56666677654     4688899887654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.01  E-value=1.2  Score=41.65  Aligned_cols=159  Identities=10%  Similarity=0.069  Sum_probs=77.9

Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE---cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV---DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                      -.-|.+++|+++.-+.... ..-.++.... -+..+.-+.|   -++.-++..+-.++.|++..+.+... ..+..|...
T Consensus       150 ~~vg~lfVy~vd~l~G~iq-~~l~v~~~~p-~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~  226 (1283)
T KOG1916|consen  150 RLVGELFVYDVDVLQGEIQ-PQLEVTPITP-YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQR  226 (1283)
T ss_pred             HHhhhhheeehHhhccccc-cceEEeecCc-CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCC
Confidence            3447788999875221000 0001111111 1222333333   34567777788888888866654332 111223221


Q ss_pred             CCCcC--CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC----CceeEEeecCC-ceEEEEecCC---------C
Q 020454          207 SLGIF--TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRET-PIKAVAEEPD---------S  270 (326)
Q Consensus       207 ~~~~~--~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~-~i~~v~~s~~---------~  270 (326)
                      ..++.  ....+.--..+|  ||..|+..+.||.++.|.+.-..    ++++.++.|+. +-.|.-++.+         -
T Consensus       227 ~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w  304 (1283)
T KOG1916|consen  227 VTDMAFFAEGVLKLASLSP--DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW  304 (1283)
T ss_pred             cccHHHHhhchhhheeeCC--CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee
Confidence            11110  000000011355  78899999999999988865211    34556666652 3222223221         1


Q ss_pred             CeEEEE-cCCCcEEEEECCCCeEE
Q 020454          271 FNIYIG-NGSGDLASVDIRTGKLL  293 (326)
Q Consensus       271 ~~l~~g-~~dg~v~iwd~~~~~~~  293 (326)
                      .+++++ ..+..+++|.-...+++
T Consensus       305 ~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  305 VLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             EEEEecccCCcceeEeeccchhhh
Confidence            234444 44566899987766655

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.82  E-value=8.9  Score=37.86  Aligned_cols=177  Identities=13%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (326)
Q Consensus        71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~  150 (326)
                      -+.|..+.+|+.+++.-...+..+        ...|..+....+.+..=-+.-..++....--.|.++-+...+...+. 
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~--------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-  165 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGL--------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-  165 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccch--------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-
Confidence            466889999999875544555432        23454444433221000001234555555566677766543321111 


Q ss_pred             cceEEEEEccC-CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          151 CSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       151 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                      .--...+.+.. +..|.++....+|+.+.+| .||  .+|.+.     ++...           .|-..      ...+.
T Consensus       166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~-----Yq~~~-----------gWf~~------rc~Ki  220 (1311)
T KOG1900|consen  166 SIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELV-----YQAED-----------GWFGS------RCRKI  220 (1311)
T ss_pred             cccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEE-----EeccC-----------chhhc------ccccc
Confidence            11111133332 4568888877788887664 555  566642     11110           00000      00000


Q ss_pred             EEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          230 FVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       230 l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      -.+.+.-..+    +.    .+.++. .+..+|..++....-..+++-+..|+|.+||+..
T Consensus       221 clt~s~ls~l----vP----s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  221 CLTKSVLSSL----VP----SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cCchhHHHHh----hh----hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            0111100000    00    012222 4566888888877777788889999999999875

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.27  E-value=18  Score=32.05  Aligned_cols=105  Identities=11%  Similarity=0.062  Sum_probs=57.4

Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEe-----ecCCceEEEEecCCC------CeEEEEc------
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFD-----FRETPIKAVAEEPDS------FNIYIGN------  277 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~-----~~~~~i~~v~~s~~~------~~l~~g~------  277 (326)
                      ...++|.|  ++++|++--..|+|++++...... .+..+.     ..+.....|+++|+-      .+|+...      
T Consensus        32 Pw~maflP--DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        32 PWALLWGP--DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             ceEEEEcC--CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            34778888  564555544469999998654321 121111     135678999999874      3455432      


Q ss_pred             ----CCCcEEEEECCCC-------eE-EEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          278 ----GSGDLASVDIRTG-------KL-LGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       278 ----~dg~v~iwd~~~~-------~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                          ....|.-|.+...       +. +..++......-..|+|.||+.+.++.|.-
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                1234544554321       11 222221001234578899999887777654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.25  E-value=7.4  Score=27.65  Aligned_cols=122  Identities=12%  Similarity=0.071  Sum_probs=66.8

Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe---ecCCCcEEEEEeCCCeEEEEeCC
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL---SIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      +|+.....|+.++.-+.|.|++...........  ..+...+.....|++++-.   |......|+.|+ ...+..||+.
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~--~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQ--DSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccc--cCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            455555677888888899999876433221111  1111112223446666544   344455777777 5678999998


Q ss_pred             CCCCceeEEeecCCceEEEEec---C-CCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          246 AQRRPVMSFDFRETPIKAVAEE---P-DSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~v~~s---~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      .... +...+.+ ..+.++.+-   . ....+++ +-+..|.=||....+...+.
T Consensus        82 ~N~d-~Fyke~~-DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   82 NNSD-LFYKEVP-DGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cCch-hhhhhCc-cceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence            6632 3333333 446666552   2 2334444 44557777877665555443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.06  E-value=17  Score=31.71  Aligned_cols=199  Identities=11%  Similarity=0.040  Sum_probs=107.9

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      ..++.+=+.||.+.+|+-+.-.+...+..+..|      +|+.-..           ..+.+++++.+..+..|.+..-.
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP------gPl~Y~~-----------~tDsfvt~sss~~l~~Yky~~La  207 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP------GPLCYCP-----------RTDSFVTASSSWTLECYKYQDLA  207 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC------cCeEEee-----------cCCEEEEecCceeEEEecHHHhh
Confidence            568999999999999998655544444433222      5665333           45689999999999999876432


Q ss_pred             cccc-------------cccceEEEEEccCCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          145 VSAE-------------SSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       145 ~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      ..+.             ......--|...-++.+..+..-.   ....+++-+. ..+.+.+- +|+..+..+-.- ...
T Consensus       208 ~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~-~G~l~~~krLd~-~p~  284 (418)
T PF14727_consen  208 SASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKD-NGSLRFQKRLDY-NPS  284 (418)
T ss_pred             hccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcC-CCeEEEEEecCC-cee
Confidence            2211             122233456666666666665433   2233333333 35656554 344443322110 000


Q ss_pred             CcCCCCceeeeEEeecC-CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce--EEEEecCCCCeEEEEcCCCcEEEE
Q 020454          209 GIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNGSGDLASV  285 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i--~~v~~s~~~~~l~~g~~dg~v~iw  285 (326)
                      .    -.++.+...... .+..+++++.++++.||.=.+   .+..-+....+|  ....|..-...|++-+.+|.+.+-
T Consensus       285 ~----~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~---L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~  357 (418)
T PF14727_consen  285 C----FCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT---LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVS  357 (418)
T ss_pred             e----EEEEEeecccCCCCceEEEEEecCCeEEEEeCCe---EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEE
Confidence            0    001111111111 122588999999999996332   233333332332  222232334578888899999988


Q ss_pred             ECCCC
Q 020454          286 DIRTG  290 (326)
Q Consensus       286 d~~~~  290 (326)
                      -+-|.
T Consensus       358 YLGTd  362 (418)
T PF14727_consen  358 YLGTD  362 (418)
T ss_pred             EeCCC
Confidence            77664

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.62  E-value=17  Score=31.18  Aligned_cols=139  Identities=10%  Similarity=0.110  Sum_probs=72.8

Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE--EEEEe-CC---CeEEEEeCC
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK--FVAGT-ND---HQVRLYDTS  245 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~--l~~~~-~d---g~v~iwd~~  245 (326)
                      |...+++...+++-+.+||+.... +..+.....+..++     ...+.+    .++.  |++++ .+   .+|++|.+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~~~~Gr~NNVDv-----rygf~l----~g~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKE-LQSLPVGRPNNVDV-----RYGFPL----NGKTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-E-EEEE-SS-EEEEEE-----EEEEEE----TTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcE-EEeecCCCcceeee-----ecceec----CCceEEEEEEecCcCCCCeEEEEEec
Confidence            345677777888999999997544 33332211111111     112111    2222  33433 32   479999766


Q ss_pred             CCCCceeEEee-------cCCceEEEEe--cC-CCC-eEEEEcCCCcEEEEECC---CC----eEEEEEcceecceEEEE
Q 020454          246 AQRRPVMSFDF-------RETPIKAVAE--EP-DSF-NIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIRSI  307 (326)
Q Consensus       246 ~~~~~~~~~~~-------~~~~i~~v~~--s~-~~~-~l~~g~~dg~v~iwd~~---~~----~~~~~~~~~~~~~v~~l  307 (326)
                      .....+..+..       ....++.+|+  +| +|. ++++...+|.+..|.+.   .+    +++++|..  ...+..+
T Consensus       136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGC  213 (381)
T PF02333_consen  136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGC  213 (381)
T ss_dssp             TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEE
T ss_pred             CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEE
Confidence            33223333321       1234667776  33 354 56688889998888775   23    45677763  4567778


Q ss_pred             EECCCCCEEEEeccC
Q 020454          308 ARHPTLPIIASCGFL  322 (326)
Q Consensus       308 ~~~p~~~~l~s~s~D  322 (326)
                      +......+|..+-.|
T Consensus       214 VVDDe~g~LYvgEE~  228 (381)
T PF02333_consen  214 VVDDETGRLYVGEED  228 (381)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEecccCCEEEecCc
Confidence            787776677766544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.41  E-value=15  Score=30.29  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=39.4

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEE-ecCCcEEEEecc
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-RKNGLTDILNPL   83 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~   83 (326)
                      +.+++.++++|.|.-|...-....+......+.+.........+++.....+.+|..+ -.+++|.+||-.
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            4678999999999999965432211111122322222333334555544344445444 567999999864

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>smart00564 PQQ beta-propeller repeat

Probab=87.31  E-value=1.9  Score=21.73  Aligned_cols=26  Identities=19%  Similarity=0.262  Sum_probs=21.6

Q ss_pred             CEEEEecCCCeEEEEECCCceeeeee
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~  200 (326)
                      ..++.++.++.+..+|.++++.+++.
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            35777889999999999999887763

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.10  E-value=4.2  Score=31.46  Aligned_cols=51  Identities=10%  Similarity=0.126  Sum_probs=39.8

Q ss_pred             CeEEEEcCCCcEEEEECC--CCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          271 FNIYIGNGSGDLASVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       271 ~~l~~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ..|+.+...+.|.+|++.  ..+++.+|..  -+.|..+.++..|.+|+|--.+.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTlE~k~   81 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTLEEKN   81 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEEEeec
Confidence            456555777789999998  3456777873  68999999999999999865443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.98  E-value=23  Score=32.04  Aligned_cols=104  Identities=10%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             CceeeeEEeecCC--CcEEEEEeCCCeEEEEeCCCC--C--CceeEEe--ec-CCc--eEEEEecCCCCeEEEEcCCCcE
Q 020454          214 TWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQ--R--RPVMSFD--FR-ETP--IKAVAEEPDSFNIYIGNGSGDL  282 (326)
Q Consensus       214 ~~v~~~~~~p~~~--~~~l~~~~~dg~v~iwd~~~~--~--~~~~~~~--~~-~~~--i~~v~~s~~~~~l~~g~~dg~v  282 (326)
                      ..|.++.|.|...  .-.+++....+.|.+|.+-..  +  +.+.+-.  .. ..+  -....|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            4588999988521  114555566889999996521  1  1111111  11 111  1345799999888877666555


Q ss_pred             EEEECCCC--eEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          283 ASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       283 ~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      .+++++..  +....+++  .+.|.+.+|.+||+.|+.+
T Consensus       137 V~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQRLVVA  173 (671)
T ss_pred             EeeeeeeCCceEEEeccC--CceEEEEEecCcCCEEEEE
Confidence            66776643  33344543  7889999999999876654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.86  E-value=18  Score=30.54  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             CCeeeeecccccccccCCCCceEEEEecCCc------EEEEEccccccc-cc-cccceEEEEEcc------CCCceEEEE
Q 020454          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGK------ASMRSIEVTKVS-AE-SSCSTVKSWNVC------ASGTIAFSK  169 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~------v~i~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~v~~~~  169 (326)
                      +.+.++.+.+        .++.+++.+.+|.      ++...+...... .. .....+.+-+..      ..-...+|+
T Consensus        20 GGlSgl~~~~--------~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~   91 (326)
T PF13449_consen   20 GGLSGLDYDP--------DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIA   91 (326)
T ss_pred             CcEeeEEEeC--------CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeE
Confidence            5567777643        4567888888888      666665542110 00 001111111110      001345778


Q ss_pred             EcCCCCEEEEecCC------CeEEEEECCCceeeeeecCCCCC------CCCcCCCCceeeeEEeecCCCcEEEEEeC--
Q 020454          170 VDISEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKN------SLGIFTPTWFTSAAFLSIDDHRKFVAGTN--  235 (326)
Q Consensus       170 ~~~~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~~l~~~~~--  235 (326)
                      +.+++.++++.=.+      ..|..++.. ++....+.-...-      ....+.....-+++++|  +++.|+++..  
T Consensus        92 ~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~~~E~~  168 (326)
T PF13449_consen   92 VPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFAAMESP  168 (326)
T ss_pred             EecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC--CCCEEEEEECcc
Confidence            87778888776566      678888876 5554433111100      02233445678899988  5655555432  


Q ss_pred             ---CC--e-------EEE--EeCCCCCCceeEEee---------cCCceEEEEecCCCCeEE
Q 020454          236 ---DH--Q-------VRL--YDTSAQRRPVMSFDF---------RETPIKAVAEEPDSFNIY  274 (326)
Q Consensus       236 ---dg--~-------v~i--wd~~~~~~~~~~~~~---------~~~~i~~v~~s~~~~~l~  274 (326)
                         |+  .       +++  ||..+...+...+..         ....++.+.+-+++++++
T Consensus       169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence               22  1       444  455442223333321         346788889989988776

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.84  E-value=4.8  Score=36.69  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=43.5

Q ss_pred             CCceEEEEecCCcEEEEEccccc---c-ccc--ccc--------ceEEEE--Ec-cCCCceEEEEEcC----CCCEEEEe
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTK---V-SAE--SSC--------STVKSW--NV-CASGTIAFSKVDI----SEKFSLFG  180 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~---~-~~~--~~~--------~~~~~~--~~-~~~~~v~~~~~~~----~~~~l~sg  180 (326)
                      +...++.+..||.+.........   . ...  ..+        +.+..+  .. ........+++++    +..+|++-
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            34578888889988877766411   0 000  000        000000  00 0122355566666    66899999


Q ss_pred             cCCCeEEEEECCCceeeeee
Q 020454          181 GKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       181 ~~d~~i~iwd~~~~~~~~~~  200 (326)
                      +.|+++|+||+.+++++...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999886554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=85.44  E-value=15  Score=31.58  Aligned_cols=101  Identities=17%  Similarity=0.149  Sum_probs=54.8

Q ss_pred             eeeeEEeecCCCcEEEEEe-----------CCC-eEEEEeCCCCC-Cc--eeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454          216 FTSAAFLSIDDHRKFVAGT-----------NDH-QVRLYDTSAQR-RP--VMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~-----------~dg-~v~iwd~~~~~-~~--~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg  280 (326)
                      ...++|.+  +++++++-.           ..+ .|.+++-..+. +.  ...+...-.....+++.++|  |++++...
T Consensus        16 P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        16 PIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            44677766  565555542           223 77777654221 11  22333333456888998888  55555554


Q ss_pred             cEEEEECCC-------CeEE-EEEcce---ecceEEEEEECCCCCEEEEec
Q 020454          281 DLASVDIRT-------GKLL-GCFIGK---CSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       281 ~v~iwd~~~-------~~~~-~~~~~~---~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ..++.|...       .+.+ ..+...   .......++|.|++.+.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            333445432       1122 223321   134578999999998777666

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.34  E-value=22  Score=30.11  Aligned_cols=107  Identities=11%  Similarity=-0.076  Sum_probs=53.9

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeCC--
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTND--  236 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~d--  236 (326)
                      ....|++.|+++++++ -..|.|++++ ..+..   +......     ..........++++|.  .++.+.++-+..  
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v-----~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~   75 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEV-----FADGERGLLGIAFHPDFASNGYLYVYYTNADE   75 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTT-----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccc-----cccccCCcccceeccccCCCCEEEEEEEcccC
Confidence            3568999999988765 5699999999 33332   2222211     1112245778999983  234333333321  


Q ss_pred             ----C--eEEEEeCCCCCCc------e-eEEee---cCCceEEEEecCCCCeEEEEc
Q 020454          237 ----H--QVRLYDTSAQRRP------V-MSFDF---RETPIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       237 ----g--~v~iwd~~~~~~~------~-~~~~~---~~~~i~~v~~s~~~~~l~~g~  277 (326)
                          .  .|.-|........      + .....   ....-..|+|.|||.+.++-+
T Consensus        76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence                2  3333333222111      1 11111   234557799999996555433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.21  E-value=14  Score=27.78  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=25.4

Q ss_pred             CceEEEEecCCC------CeEEEEcCCCcEEEEECCC
Q 020454          259 TPIKAVAEEPDS------FNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       259 ~~i~~v~~s~~~------~~l~~g~~dg~v~iwd~~~  289 (326)
                      ..+..++|||.|      -.|++-+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999953      3677999999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.84  E-value=29  Score=34.33  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=23.7

Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          267 EPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       267 s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      ++++..++++..||.+.+||...++.
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCCce
Confidence            77899999999999999999998755

>PHA02790 Kelch-like protein; Provisional

Probab=84.46  E-value=27  Score=31.33  Aligned_cols=132  Identities=11%  Similarity=0.064  Sum_probs=62.8

Q ss_pred             CCCEEEEecCC--CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCCC
Q 020454          173 SEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQ  247 (326)
Q Consensus       173 ~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~~  247 (326)
                      ++.+.+.||.+  ..+..||..+++-... ..       +..+..-.+++..   ++++.+.|+.++   .+..||+++.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~-------l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNM-PS-------LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEEC-CC-------CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC
Confidence            56777888864  3477787654432111 11       1111111122222   455777777553   4778888754


Q ss_pred             CC-ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE--EcceecceEEEEEECCCCCEEEEeccCc
Q 020454          248 RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       248 ~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .- .+............+++  +++..+.|   |.+.+||.++++....  ++.. .... +++. -++++.+.||.++
T Consensus       387 ~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~v-~~~~IYviGG~~~  457 (480)
T PHA02790        387 QWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNTWTLIDDPIYP-RDNP-ELII-VDNKLLLIGGFYR  457 (480)
T ss_pred             EEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCcEeEcCCCCCC-cccc-EEEE-ECCEEEEECCcCC
Confidence            10 00001111111122222  45555566   4578899987755421  2211 1122 2222 3677888888763

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.33  E-value=17  Score=28.21  Aligned_cols=110  Identities=14%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             eEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC------cEEEE
Q 020454           67 LLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG------KASMR  138 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g------~v~i~  138 (326)
                      .|+++.....|.+|++.+.  +....+...         +.|..+.+..        .++++++--++.      .+++|
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------~~V~~l~y~~--------~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV---------GRVLQLVYSE--------AGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcch---------hheeEEEecc--------ccceEEEEEeecCCccceEEEEE
Confidence            4666688888999998733  334444442         6777777655        567888765443      33443


Q ss_pred             ---Eccccc-c----------cccc----ccceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCce
Q 020454          139 ---SIEVTK-V----------SAES----SCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE  195 (326)
Q Consensus       139 ---~~~~~~-~----------~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~  195 (326)
                         +....+ .          ..+.    ....+.+.++.-..+..+++.-|- |+++ +|+ ++.+.+|.+....
T Consensus        93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen   93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEE
Confidence               222111 0          0000    112344555555667778888775 4554 544 4589999886543

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.24  E-value=3.7  Score=21.72  Aligned_cols=28  Identities=11%  Similarity=0.134  Sum_probs=23.4

Q ss_pred             EEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      .+..+..++.|.-.|.++++.++..+..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            3556699999999999999999987653

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=83.82  E-value=5.7  Score=31.86  Aligned_cols=60  Identities=12%  Similarity=0.104  Sum_probs=43.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEE
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL   80 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~   80 (326)
                      -.|+.|+++|.|.|.|....     .+..++.-+.-+..+.+.+..+..+. .+++++.||.|.+.
T Consensus       196 scLViGTE~~~i~iLd~~af-----~il~~~~lpsvPv~i~~~G~~devdy-RI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  196 SCLVIGTESGEIYILDPQAF-----TILKQVQLPSVPVFISVSGQYDEVDY-RIVVACRDGKIYTI  255 (257)
T ss_pred             ceEEEEecCCeEEEECchhh-----eeEEEEecCCCceEEEEEeeeeccce-EEEEEeCCCEEEEE
Confidence            67999999999999998876     56666666666666655554432222 58899999988764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.60  E-value=20  Score=31.35  Aligned_cols=100  Identities=10%  Similarity=0.068  Sum_probs=63.6

Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+.|.++.|++  |.+.+|+--.+.+|.+++.....   ....+-+.....|....|+.+ .-+|.-...| +.+|-...
T Consensus        66 ~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   66 KGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             CCceeEEEecc--CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            35688999998  56689999999999999975331   112233344556888899765 4555434443 55554432


Q ss_pred             -CeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          290 -GKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       290 -~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                       .+.++..+.| .-.|+=..|+++.+.+.
T Consensus       142 ekrslRlVks~-~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  142 EKRSLRLVKSH-NLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhhhhhc-ccCccEEEEccccceEe
Confidence             2233444555 66788888888766443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.24  E-value=25  Score=29.11  Aligned_cols=261  Identities=11%  Similarity=0.039  Sum_probs=124.6

Q ss_pred             EeeeCCCCCeEEEEecCCcEEEEeccc----cceeeeecccCCCCCCCCCCCeeeeecccccccccC----CCCceEEEE
Q 020454           58 SIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS----SRSRTLLTC  129 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~dg~i~i~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~----~~~~~l~~~  129 (326)
                      ....++.+.+-++....+...+||...    +......-.+..+.........+++.+-....-.-.    .....++.+
T Consensus        27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence            333444555666667778999998851    111111111111111112244555554221110000    012357889


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceE-EEEEcC--CCCEEEE-ecCCCeEEEEECCCceeeeeecCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA-FSKVDI--SEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPK  205 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~s-g~~d~~i~iwd~~~~~~~~~~~~~~~  205 (326)
                      +++|+|.-|.-......   ....+.+.+......|+ .+++..  .+++|.. =-..++|.+||-.-.+.... .....
T Consensus       107 tEdGTisaW~p~v~~t~---~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D  182 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTR---MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID  182 (336)
T ss_pred             eCCceEEeecCcCCccc---ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence            99999999984322110   00112223322223332 344443  2445443 34668888888543322110 00000


Q ss_pred             CCCC-cCCCCceee------eEEeec-CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec--CCceEEEEecC------C
Q 020454          206 NSLG-IFTPTWFTS------AAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEP------D  269 (326)
Q Consensus       206 ~~~~-~~~~~~v~~------~~~~p~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~i~~v~~s~------~  269 (326)
                      ..+- -..|-.|..      |.|... .+.+.=+.+-.-|.|-+||+.-  +.++.+...  -..-+.|+..|      .
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCC
Confidence            0000 001111111      112111 1111224445567999999883  345555322  12345566654      3


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeEEEEEccee-----cceEEEEEECC------CCCEEEEeccCcc
Q 020454          270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHP------TLPIIASCGFLEA  324 (326)
Q Consensus       270 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~-----~~~v~~l~~~p------~~~~l~s~s~D~~  324 (326)
                      +.+|+----||+|..||..+++.+..+....     ....+.|+|..      .+.+.++++-|..
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~de  326 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDDE  326 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCCc
Confidence            5566655569999999999998887776431     23567888874      2356667766644

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK10115 protease 2; Provisional

Probab=83.06  E-value=43  Score=31.72  Aligned_cols=110  Identities=6%  Similarity=0.018  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCEEEEec-----CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-C--
Q 020454          165 IAFSKVDISEKFSLFGG-----KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D--  236 (326)
Q Consensus       165 v~~~~~~~~~~~l~sg~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-d--  236 (326)
                      +..+.++|++++|+.+-     ....|++.|+.+++.+...-.           .--..++|.++  ++.|+.... +  
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----------~~~~~~~w~~D--~~~~~y~~~~~~~  195 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----------NVEPSFVWAND--SWTFYYVRKHPVT  195 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----------CcceEEEEeeC--CCEEEEEEecCCC
Confidence            66778999999887643     223488888876653221100           00135788874  334444332 2  


Q ss_pred             ---CeEEEEeCCCCC-CceeEEeecCCceE-EEEecCCCCeEEEEc---CCCcEEEEEC
Q 020454          237 ---HQVRLYDTSAQR-RPVMSFDFRETPIK-AVAEEPDSFNIYIGN---GSGDLASVDI  287 (326)
Q Consensus       237 ---g~v~iwd~~~~~-~~~~~~~~~~~~i~-~v~~s~~~~~l~~g~---~dg~v~iwd~  287 (326)
                         ..|+.+++.+.. +-...+...+.... .+..+.++++++..+   .++.+.+++.
T Consensus       196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence               367778877652 11223333333333 333344787766433   3357888884

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=83.03  E-value=23  Score=33.48  Aligned_cols=155  Identities=10%  Similarity=0.062  Sum_probs=81.7

Q ss_pred             cCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc
Q 020454            7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (326)
Q Consensus         7 ~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~   86 (326)
                      .+....|.-.+..|+++|.+.++.-..+ ..............+....+  .+  ...  -+..|.-||++-.|-..-..
T Consensus       540 ~~~~as~~PTic~gtq~ssisissss~~-s~ke~~~~~~spe~~~v~~l--~~--ss~--Slgagl~dgt~a~y~rap~g  612 (925)
T KOG3522|consen  540 PDTQASPHPTICLGTQTSSISISSSSLD-SIKEVTSEPPSPEHESVKLL--LF--SSG--SLGAGLIDGTLAVYGRAPSG  612 (925)
T ss_pred             cccccCCCCcccccCccceeEEeeccCC-cccceeccCCCCchhhhhhh--hc--ccc--ccccCccCCccccccCCCCC
Confidence            3444455677889999999999987632 22222222222222222211  11  111  15556667777666432111


Q ss_pred             eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc----CC
Q 020454           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC----AS  162 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~----~~  162 (326)
                      .   .+...+-....+..++.++.+.           +.++.++.+|.+.++.....          ++.|+..    +.
T Consensus       613 S---wd~ep~~~~~~g~lPvrsla~~-----------ed~~was~gG~V~vi~~tt~----------~~~~~leahqee~  668 (925)
T KOG3522|consen  613 S---WDGEPNISIPTGSLPVRSLAFQ-----------EDFVWASEGGCVHVIPSTTF----------IRSWDLEAHQEEA  668 (925)
T ss_pred             C---CCCCCccccccCCccccchhhh-----------hceeeeecCCceEEEechhc----------cccchhHHHHhhc
Confidence            0   0000000001333567766643           36888999999999986542          2333322    23


Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK  193 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~  193 (326)
                      -.|++|....++-+++..+.| .+++++.++
T Consensus       669 ~~Vthm~~~~~gVwvafasG~-~~rlfhtet  698 (925)
T KOG3522|consen  669 HSVTHMLYLDNGVWVAFASGD-EERLFHTET  698 (925)
T ss_pred             ceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence            468888888777666654443 566666554

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=82.95  E-value=49  Score=32.35  Aligned_cols=68  Identities=13%  Similarity=0.144  Sum_probs=39.5

Q ss_pred             ee-eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC-------CCeEEEEecCCcEEEE--eccc
Q 020454           15 LR-ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN-------DPLLAVARKNGLTDIL--NPLN   84 (326)
Q Consensus        15 ~~-l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~g~~dg~i~i~--~~~~   84 (326)
                      .| +..++.++.+|+..+...     .....++.+.-+....++++...+.       .=+|.+|-.+|.+.-+  |.-+
T Consensus       600 srfla~a~~d~~vriisL~p~-----d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~  674 (1205)
T KOG1898|consen  600 SRFLALASVDNMVRIISLDPS-----DCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVT  674 (1205)
T ss_pred             cceeeeeccccceeEEEecCc-----ceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccc
Confidence            55 777889999999998866     3333444433333333444332211       1267888888877655  3335


Q ss_pred             cce
Q 020454           85 GDL   87 (326)
Q Consensus        85 ~~~   87 (326)
                      |.+
T Consensus       675 G~l  677 (1205)
T KOG1898|consen  675 GQL  677 (1205)
T ss_pred             cce
Confidence            544

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=82.90  E-value=46  Score=31.93  Aligned_cols=222  Identities=10%  Similarity=0.042  Sum_probs=112.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCccee-eecc-CCCCCceEEEEEeeeCCCCCeEEEEecC---CcEEEEecc--cc--
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVV-ERWG-DPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPL--NG--   85 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~--~~--   85 (326)
                      .-+++-..+|.+++|=-+.. ....+.. .... -......+..+++....+++.+++++.+   +.|++|.+.  -+  
T Consensus        63 ~A~i~Vt~nG~l~l~yQ~~~-~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~  141 (753)
T PF11635_consen   63 SACIAVTRNGLLKLWYQKPD-GQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAK  141 (753)
T ss_pred             eEEEEEecCCeEEEEEEcCC-CccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCc
Confidence            56888999999999987432 1111111 0000 0123344555666655566555555444   889999653  11  


Q ss_pred             ------ceeeeecccCCCCC---C------------CCCCCeeeeecccccccccCCCCceEEEEec----CCcEEEEEc
Q 020454           86 ------DLRVAISNAGDSGA---Q------------PEDDGIVGLHLFKRQREESSSRSRTLLTCTT----KGKASMRSI  140 (326)
Q Consensus        86 ------~~~~~~~~~~~~~~---~------------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----~g~v~i~~~  140 (326)
                            +....+...+....   +            ..-..+.++.+...... ..+....+++.+.    ...|.-|.+
T Consensus       142 ~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~-~~~~p~Ili~~~~~~~~~SiI~RweL  220 (753)
T PF11635_consen  142 PQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPD-KDSAPEILIVYSSPNTPSSIIERWEL  220 (753)
T ss_pred             CccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCC-CCCCCeEEEEEEcCCCCCcEEEEEEE
Confidence                  11111111100000   0            01135556666552211 1112333444332    346788988


Q ss_pred             cccccc-------cc------cccceEEEEEc----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee---
Q 020454          141 EVTKVS-------AE------SSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA---  200 (326)
Q Consensus       141 ~~~~~~-------~~------~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~---  200 (326)
                      ......       .+      ........|..    .....|.++....-+.+++....||+|.++|-.+.+.+...   
T Consensus       221 ~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~  300 (753)
T PF11635_consen  221 REEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTN  300 (753)
T ss_pred             EccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccc
Confidence            764320       01      11111122221    12345778888778889999999999999998887655443   


Q ss_pred             -cCC------CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          201 -KPP------PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       201 -~~~------~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                       ...      ......+.....+--++|+|+  +..++.-..+|.+.
T Consensus       301 ~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt--~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  301 GEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT--MCSLVQIDEDGKTK  345 (753)
T ss_pred             cCCccccccccccccccccCCCCceEEECcc--cceEEEEecCCCce
Confidence             111      000111111123445789985  34677777788755

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=82.63  E-value=27  Score=29.14  Aligned_cols=101  Identities=15%  Similarity=0.091  Sum_probs=59.3

Q ss_pred             eEEEEEcCCCCEEEEecC-CCeEEEEECCC--ce----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454          165 IAFSKVDISEKFSLFGGK-GVEVNVWDLDK--CE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (326)
Q Consensus       165 v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~--~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg  237 (326)
                      -+.|+|+|+++.|+.+.. .+.|.-|++..  +.    ..+.....        .+...-.++..  .+|++.+++..+|
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--------~~G~PDG~~vD--adG~lw~~a~~~g  234 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--------EPGLPDGMAVD--ADGNLWVAAVWGG  234 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--------CCCCCCceEEe--CCCCEEEecccCC
Confidence            458999999977766544 47788887763  11    11111100        01111123333  2565665554444


Q ss_pred             -eEEEEeCCCCCCceeEEeecCCceEEEEec-CCCCeEEEEc
Q 020454          238 -QVRLYDTSAQRRPVMSFDFRETPIKAVAEE-PDSFNIYIGN  277 (326)
Q Consensus       238 -~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s-~~~~~l~~g~  277 (326)
                       .|..|+.. + +.+..+......+++++|- |+.+.|++.+
T Consensus       235 ~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         235 GRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             ceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence             99999999 5 5678887776778888885 3445555433

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=81.90  E-value=5.8  Score=21.14  Aligned_cols=21  Identities=33%  Similarity=0.678  Sum_probs=16.5

Q ss_pred             CCCeEEEEcCCCcEEEEECCC
Q 020454          269 DSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       269 ~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      .+..++.++.||.++.+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            466899999999999999864

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=81.72  E-value=29  Score=28.87  Aligned_cols=117  Identities=15%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             EEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEe
Q 020454          187 NVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE  266 (326)
Q Consensus       187 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~  266 (326)
                      .++|+.+++.+..--..+...            .|+   ++++.++-+..|.+.-+|..++ + ...+..-.+....++|
T Consensus       188 ~vidv~s~evl~~GLsmPhSP------------RWh---dgrLwvldsgtGev~~vD~~~G-~-~e~Va~vpG~~rGL~f  250 (335)
T TIGR03032       188 CVIDIPSGEVVASGLSMPHSP------------RWY---QGKLWLLNSGRGELGYVDPQAG-K-FQPVAFLPGFTRGLAF  250 (335)
T ss_pred             EEEEeCCCCEEEcCccCCcCC------------cEe---CCeEEEEECCCCEEEEEcCCCC-c-EEEEEECCCCCcccce


Q ss_pred             cCCCCeEEEEcCCCc--------------------EEEEECCCCeEEEEEc--ceecceEEEEEECCCCCEEEEeccCc
Q 020454          267 EPDSFNIYIGNGSGD--------------------LASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       267 s~~~~~l~~g~~dg~--------------------v~iwd~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .  |+++++|-+.-.                    |.+.|+++|..++-++  +. -..+..+++-|.-+.=..-+.|.
T Consensus       251 ~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~-v~EifdV~vLPg~r~P~~lg~~~  326 (335)
T TIGR03032       251 A--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV-IEEIYDVAVLPGVRRPEALGPDD  326 (335)
T ss_pred             e--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc-eeEEEEEEEecCCCCccccCCCc

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=80.85  E-value=8.8  Score=33.36  Aligned_cols=147  Identities=18%  Similarity=0.138  Sum_probs=84.5

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeee-cCCCCCCCCcCCCCcee-eeEEeecCCCcEEEEEeCCCeE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTA-KPPPKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQV  239 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~l~~~~~dg~v  239 (326)
                      ..+..+-..|+++.+..-+. .++.++++.+... ..++ ...+.+..     ..|+ .....  ..+..+++++.||-|
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~-----~~Vte~l~lL--~Gg~SLLv~~~dG~v  292 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR-----HQVTEQLYLL--SGGFSLLVVHEDGLV  292 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH-----HHHHHHHHHH--hCceeEEEEcCCCce
Confidence            45667778999988876544 6888998875432 1111 11111110     1122 11111  145578888889988


Q ss_pred             EEE-eCCCCCCc----eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454          240 RLY-DTSAQRRP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       240 ~iw-d~~~~~~~----~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                      .-| |.+...++    ++.++....++..+.-..+.+-+++-+..|++.++.....+.+..-+.  ...+.-++++|.+.
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~  370 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccc
Confidence            776 66644333    223333334555444334456677888899998887665555432221  34667788999888


Q ss_pred             EEEEe
Q 020454          315 IIASC  319 (326)
Q Consensus       315 ~l~s~  319 (326)
                      ++++-
T Consensus       371 ~Ll~e  375 (733)
T COG4590         371 YLLSE  375 (733)
T ss_pred             hheee
Confidence            77653

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=80.45  E-value=44  Score=30.18  Aligned_cols=266  Identities=14%  Similarity=0.152  Sum_probs=118.9

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc--ceeeee
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAI   91 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~   91 (326)
                      ..+++-++++|.+....+... .+ .-.+..++.-  .....++++.... +.+|++|+.-|.=.++.+...  +++..+
T Consensus       222 ~~~~lL~~e~G~l~~l~l~~~-~~-~i~i~~~g~~--~~~~s~l~~l~~g-~d~lf~gs~~gds~l~~~~~~~l~~~~~~  296 (504)
T PF10433_consen  222 GDRILLQDEDGDLYLLTLDND-GG-SISITYLGTL--CSIASSLTYLKNG-GDYLFVGSEFGDSQLLQISLSNLEVLDSL  296 (504)
T ss_dssp             SSEEEEEETTSEEEEEEEEEE-EE-EEEEEEEEE----S-ESEEEEESTT---EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEEEEC-CC-eEEEEEcCCc--CChhheEEEEcCC-CEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence            368899999999988888764 11 0011122221  1122234444443 457889988776556655433  233333


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccC--CCCceEEEEe---cCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESS--SRSRTLLTCT---TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~--~~~~~l~~~~---~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (326)
                      ..         -+||..+...+.......  .....+++++   .+|.+++..-...-.     ...+..-....-..++
T Consensus       297 ~N---------~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~-----~~~~~~~~l~~v~~iW  362 (504)
T PF10433_consen  297 PN---------WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIE-----GLELASSELPGVTGIW  362 (504)
T ss_dssp             -------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE-------EEEEEEESTEEEEE
T ss_pred             cC---------cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCce-----eeeeeccCCCCceEEE
Confidence            33         378988887542210000  0001677775   467777765322110     0011111111112233


Q ss_pred             EEEEcC-CCCEEEEecCCCeEEEEECC---CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          167 FSKVDI-SEKFSLFGGKGVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       167 ~~~~~~-~~~~l~sg~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      .+.... ++.+|+.+..+ .-+++.+.   ..+.+..+...   .... ....+.+..+.   + ..++=.+. ..|++.
T Consensus       363 ~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~---~f~~-~~~Tl~~~~~~---~-~~ivQVt~-~~i~l~  432 (504)
T PF10433_consen  363 TLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED---GFDT-DEPTLAAGNVG---D-GRIVQVTP-KGIRLI  432 (504)
T ss_dssp             EE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE------TS-S-SS-EEEEEEET---T-TEEEEEES-SEEEEE
T ss_pred             EeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc---cCCC-CCCCeEEEEcC---C-CeEEEEec-CeEEEE
Confidence            333322 24666665554 33444443   23333222110   0000 01122222221   2 25555553 458888


Q ss_pred             eCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-c---eecceEEEEEECC
Q 020454          243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-G---KCSGSIRSIARHP  311 (326)
Q Consensus       243 d~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~---~~~~~v~~l~~~p  311 (326)
                      +.... +....+.. ....|.+.+.  ++.+++.+..++.+..+.+.......... .   .....|.++...|
T Consensus       433 ~~~~~-~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  433 DLEDG-KLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             ESSST-SEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             ECCCC-eEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            87755 44445443 3445666555  45678888888999999998776643322 1   0267888888776

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-05
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	4e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	6e-05
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-04

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 18/186 (9%), Positives = 48/186 (25%), Gaps = 15/186 (8%)

Query: 149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-------- 200
           S   T+    +  + T         +           +  +D      +           
Sbjct: 232 SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAE 291

Query: 201 -KPPPKNSLGIFTP---TWFTSAAFL-SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255
                      +     ++  S +   S  +         D    +++         +  
Sbjct: 292 FDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS 351

Query: 256 -FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314
            FR + +  V   P  ++    +G+  L +V  R    +   +     +I +I      P
Sbjct: 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-RETTITAIGVSRLHP 410

Query: 315 IIASCG 320
           ++ +  
Sbjct: 411 MVLAGS 416

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 36/197 (18%)

Query: 153 TVKSWNVCASG-------------TIAFSK-----VDISEKFSLFGGKGVEVNVWDL--D 192
           ++K W+V ++G              + FS      + I +      G    +N++++  D
Sbjct: 97  SIKLWDV-SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG---SINIYEIERD 152

Query: 193 KCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250
                 T   + P    +        T A + +    +  +AG  D ++  YD S     
Sbjct: 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEY 210

Query: 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV---DIRTGKLLGCFIGKCSGSIRSI 307
           V S D  E  I  +   PD    Y    S D  +    D+ T ++L  +       + + 
Sbjct: 211 VDSIDLHEKSISDMQFSPDL--TYFITSSRD-TNSFLVDVSTLQVLKKYET--DCPLNTA 265

Query: 308 ARHPTLPIIASCGFLEA 324
              P    I   G  EA
Sbjct: 266 VITPLKEFIILGGGQEA 282

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
                +      +V +++   Q   V S    ETP++A          +I  GS D   +
Sbjct: 24  TEPWVLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAGKFIARK--NWIIVGSDD-FRI 79

Query: 286 ---DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
              +  TG+ +  F       IRSIA HPT P + S  
Sbjct: 80  RVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS 116

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 2/106 (1%)

Query: 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274
                A       + ++A   D+   +        P +S D     + +  +   + +I+
Sbjct: 272 RSWCIAT-HPTGRKNYIASGFDNGFTVLSL-GNDEPTLSLDPVGKLVWSGGKNAAASDIF 329

Query: 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
                G+          L    +G      +S+A  P    +   G
Sbjct: 330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 15/155 (9%), Positives = 36/155 (23%), Gaps = 9/155 (5%)

Query: 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227
             +   +   +   +   ++   L   + I T   P   + G          A +S    
Sbjct: 42  KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGG-------EHPAIISRGPC 94

Query: 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD--LASV 285
            + +     +Q+ + D+   +            I  +    +    Y         +   
Sbjct: 95  NRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154

Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
                        K      S   H    ++A   
Sbjct: 155 SYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS 189

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 18/209 (8%), Positives = 54/209 (25%), Gaps = 11/209 (5%)

Query: 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163
                       +E + S       C  + +    ++  T++    + +T+ + N    G
Sbjct: 26  QNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDG--ALHFTQLKDSKTITTITTPNPRTGG 83

Query: 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223
                         L    G ++ + D    + +   +    N +              +
Sbjct: 84  EHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI--------IYMYGHN 135

Query: 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283
             +   F+   N   +         + ++     +    +     DS  + + +  G L 
Sbjct: 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195

Query: 284 SVDIRTGKLLGCFIGK-CSGSIRSIARHP 311
             ++ +               I+ +    
Sbjct: 196 VYNLSSPDQASSRFPVDEEAKIKEVKFAD 224

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 11/144 (7%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTP------TWFTSAAFLSIDDHRKFVAGTNDHQV 239
           + V  ++  ++    K      +            +         ++    VA TN  +V
Sbjct: 135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV 194

Query: 240 RLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
            ++D     R  ++    R   + ++  + +   + +G   G +   DIR   L+  +  
Sbjct: 195 IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254

Query: 299 KCSGSIRSIARHPTLP----IIAS 318
                I  +           I+  
Sbjct: 255 GDHAPITHVEVCQFYGKNSVIVVG 278

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.77
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.63
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.58
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.5
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.44
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.44
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.38
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.37
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.37
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.35
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.34
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.33
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.28
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.26
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.24
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.21
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.21
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.17
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.16
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.13
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.11
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.07
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.07
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.06
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.06
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.06
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.95
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.91
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.9
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.86
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.86
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.86
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.85
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.81
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.8
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.71
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.7
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.68
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.65
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.63
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.58
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.57
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.56
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.53
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.47
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.44
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.39
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.33
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.13
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.94
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.92
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.83
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.8
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.74
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.74
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.69
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.54
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.35
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.33
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.19
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.07
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.05
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.02
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.0
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.98
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.9
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.87
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.83
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.8
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.66
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.62
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.55
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.46
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.14
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.08
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.95
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.72
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.58
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.51
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.14
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.06
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.04
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.03
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.91
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.85
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.04
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.86
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.33
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.62
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.6
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.91
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.47
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.45
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.63
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.0
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.92
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	88.48
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.27
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.98
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.55
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	86.31
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.3
3ott_A	758	Two-component system sensor histidine kinase; beta	85.11
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	84.33
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.46
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.79
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	81.6
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	80.58
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	80.21

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=283.71  Aligned_cols=266  Identities=18%  Similarity=0.159  Sum_probs=223.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.||.||||++..+     .....+.-..+...+.++.+.  +.++++++++.|++|++||+.+++.+..+.  
T Consensus        49 ~~l~tgs~D~~v~vW~~~~~-----~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~--  119 (321)
T 3ow8_A           49 ETVVTGSLDDLVKVWKWRDE-----RLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKSID--  119 (321)
T ss_dssp             CEEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred             CEEEEEcCCCCEEEEECCCC-----CeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCEEEEEe--
Confidence            46999999999999999866     333344334555566666554  445689999999999999999888777665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...+..+.+.+        ++..+++++.+|.+++|+++...        ....+. .+...+.+++|+|++
T Consensus       120 ------~~~~~~~~~~~sp--------dg~~l~~g~~dg~v~i~~~~~~~--------~~~~~~-~~~~~v~~~~~spdg  176 (321)
T 3ow8_A          120 ------AGPVDAWTLAFSP--------DSQYLATGTHVGKVNIFGVESGK--------KEYSLD-TRGKFILSIAYSPDG  176 (321)
T ss_dssp             ------CCTTCCCCEEECT--------TSSEEEEECTTSEEEEEETTTCS--------EEEEEE-CSSSCEEEEEECTTS
T ss_pred             ------CCCccEEEEEECC--------CCCEEEEEcCCCcEEEEEcCCCc--------eeEEec-CCCceEEEEEECCCC
Confidence                  3335566677655        66799999999999999987543        222333 235679999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ++|++|+.|+.|++||+++++.+..+..|.         ..|++++|+|  ++++|++++.|++|++||++.. ..+..+
T Consensus       177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~sp--d~~~l~s~s~dg~i~iwd~~~~-~~~~~~  244 (321)
T 3ow8_A          177 KYLASGAIDGIINIFDIATGKLLHTLEGHA---------MPIRSLTFSP--DSQLLVTASDDGYIKIYDVQHA-NLAGTL  244 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCCCEEEECT--TSCEEEEECTTSCEEEEETTTC-CEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcccC---------CceeEEEEcC--CCCEEEEEcCCCeEEEEECCCc-ceeEEE
Confidence            999999999999999999999888877654         4588999998  5669999999999999999976 567888


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+| .+.|.+++|+|++++|+++|.||.+
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeE
Confidence            899999999999999999999999999999999999999999998 9999999999999999999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-40  Score=272.72  Aligned_cols=268  Identities=15%  Similarity=0.086  Sum_probs=219.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.||.|++||+.++     +....+..+..  .+.++.+..  .+++|++|+.|++|++||+.+++.+..+.  
T Consensus        26 ~~l~s~~~dg~v~lWd~~~~-----~~~~~~~~~~~--~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--   94 (304)
T 2ynn_A           26 PWVLTTLYSGRVELWNYETQ-----VEVRSIQVTET--PVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFE--   94 (304)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEEECCSS--CEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             CEEEEEcCCCcEEEEECCCC-----ceeEEeeccCC--cEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEEEe--
Confidence            56899999999999999876     44444443333  344555543  35589999999999999999988877765  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  173 (326)
                            .|.+.|.++.+.+        ++..+++++.||.|++||++....       ....+ ..+...|.+++|+| +
T Consensus        95 ------~h~~~v~~~~~~~--------~~~~l~sgs~D~~v~lWd~~~~~~-------~~~~~-~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           95 ------AHPDYIRSIAVHP--------TKPYVLSGSDDLTVKLWNWENNWA-------LEQTF-EGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             ------CCSSCEEEEEECS--------SSSEEEEEETTSCEEEEEGGGTTE-------EEEEE-CCCCSCEEEEEECTTC
T ss_pred             ------CCCCcEEEEEEcC--------CCCEEEEECCCCeEEEEECCCCcc-------hhhhh-cccCCcEEEEEECCCC
Confidence                  5668899999765        567899999999999999875421       12222 24567899999999 5


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +.+|++|+.|++|++||+++......+....        ...+..+.|.|..++.+|++++.|++|++||++++ +++..
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~  223 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT  223 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-cccee
Confidence            7899999999999999998877665544322        23578889988767779999999999999999987 67889


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC--EEEEeccCccC
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGFLEAA  325 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~s~D~~~  325 (326)
                      +..|...|.+++|+|++++|++|+.||.|++||+++++++..+..| ...+.+++|+|++.  ++++|+.||.+
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g~~  296 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFT  296 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCCceE
Confidence            9999999999999999999999999999999999999999999988 89999999999875  68999888753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.7e-41  Score=287.56  Aligned_cols=266  Identities=11%  Similarity=0.123  Sum_probs=224.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.||.|+|||+.++     +....+..  +...+.+++|.  +.+++|++|+.||+|++||+.+++.+..+.  
T Consensus       121 ~~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~--h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--  189 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYETG-----DFERTLKG--HTDSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRTMH--  189 (410)
T ss_dssp             SEEEEEESSSCEEEEETTTC-----CCCEEECC--CSSCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEECCC--
T ss_pred             CEEEEEeCCCeEEEEECCCC-----cEEEEEec--cCCcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCceeEEEc--
Confidence            46899999999999999877     34444443  33445556654  456699999999999999998877766554  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|...|.++.+.+        ++..+++++.|+.|++||+....        .++.+. .+...|.++.++|++
T Consensus       190 ------~h~~~V~~v~~~p--------~~~~l~s~s~D~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~g  246 (410)
T 1vyh_C          190 ------GHDHNVSSVSIMP--------NGDHIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDG  246 (410)
T ss_dssp             ------CCSSCEEEEEECS--------SSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTS
T ss_pred             ------CCCCCEEEEEEeC--------CCCEEEEEeCCCeEEEEECCCCc--------EEEEEe-CCCccEEEEEECCCC
Confidence                  5667899998766        56789999999999999987543        344454 356789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC------------------CCcEEEEEeCC
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID------------------DHRKFVAGTND  236 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------------------~~~~l~~~~~d  236 (326)
                      ++|++|+.|+.|++||+++++....+..|.         ..|.+++|+|..                  ++.+|++++.|
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D  317 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  317 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCceeeEecCCC---------ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence            999999999999999999988877776654         568899998842                  15689999999


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                      +.|++||++++ .++..+..|...|++++|+|++++|++|+.||.|++||+++++++..+.+| ...|++++|+|++++|
T Consensus       318 ~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l  395 (410)
T 1vyh_C          318 KTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYV  395 (410)
T ss_dssp             SEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSCE
T ss_pred             CeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCCEE
Confidence            99999999987 678889899999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             EEeccCccC
Q 020454          317 ASCGFLEAA  325 (326)
Q Consensus       317 ~s~s~D~~~  325 (326)
                      ++||.||.+
T Consensus       396 ~sgs~D~~i  404 (410)
T 1vyh_C          396 VTGSVDQTV  404 (410)
T ss_dssp             EEEETTSEE
T ss_pred             EEEeCCCcE
Confidence            999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.2e-39  Score=269.00  Aligned_cols=266  Identities=12%  Similarity=0.157  Sum_probs=213.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee-eeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~   93 (326)
                      -.+++++.||.|++||+.++     +....+..  +...+.++.+  ++.+++|++|+.|+.|++|++.+++.. .....
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~~--~~~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~  138 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTT-----NKVHAIPL--RSSWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTC-----CEEEEEEC--SSSCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCC-----CcceEeec--CCccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence            46899999999999998876     33334433  3334445555  445679999999999999999765321 11111


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                      +     ..|.+.+.++.+.+         ++.+++++.|+.|++||+....        .+..+. .+...|.+++|+|+
T Consensus       139 ~-----~~h~~~v~~~~~~~---------~~~l~s~s~d~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~  195 (340)
T 1got_B          139 L-----AGHTGYLSCCRFLD---------DNQIVTSSGDTTCALWDIETGQ--------QTTTFT-GHTGDVMSLSLAPD  195 (340)
T ss_dssp             E-----ECCSSCEEEEEEEE---------TTEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTT
T ss_pred             e-----cCCCccEEEEEECC---------CCcEEEEECCCcEEEEECCCCc--------EEEEEc-CCCCceEEEEECCC
Confidence            1     15567888777643         4579999999999999987543        333333 35678999999999


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +++|++|+.|+.|++||+++++.+..+..|.         ..|++++|+|  ++++|++++.|++|++||++.. +.+..
T Consensus       196 ~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~-~~~~~  263 (340)
T 1got_B          196 TRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICFFP--NGNAFATGSDDATCRLFDLRAD-QELMT  263 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEEcCCc---------CCEEEEEEcC--CCCEEEEEcCCCcEEEEECCCC-cEEEE
Confidence            9999999999999999999998887776654         5689999998  5669999999999999999976 44555


Q ss_pred             Eeec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          254 FDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       254 ~~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..+  ...|++++|+|++++|++|+.||.|++||+.+++.+..+.+| .++|.+++|+|++.+|+|||.||.+
T Consensus       264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccE
Confidence            5432  347999999999999999999999999999999999999998 9999999999999999999999975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=272.27  Aligned_cols=238  Identities=13%  Similarity=0.109  Sum_probs=192.0

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      .+.++.|..+   ..|++|+.||+|+|||+.+++.+......    ...|.+.|.++++.+        ++..|++++.|
T Consensus        84 ~v~~~~~s~d---~~l~~~s~dg~v~lWd~~~~~~~~~~~~~----~~~H~~~V~~v~~sp--------dg~~l~sgs~d  148 (344)
T 4gqb_B           84 GVADLTWVGE---RGILVASDSGAVELWELDENETLIVSKFC----KYEHDDIVSTVSVLS--------SGTQAVSGSKD  148 (344)
T ss_dssp             CEEEEEEETT---TEEEEEETTSEEEEEEECTTSSCEEEEEE----EECCSSCEEEEEECT--------TSSEEEEEETT
T ss_pred             CEEEEEEeCC---CeEEEEECCCEEEEEeccCCCceeEeecc----ccCCCCCEEEEEECC--------CCCEEEEEeCC
Confidence            4556666543   36999999999999999888765443321    015678999999866        66799999999


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      |.|++||++...        .++.+. .+...|.+++|++++ .+|++|+.|++|++||+++++....+....       
T Consensus       149 ~~i~iwd~~~~~--------~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------  212 (344)
T 4gqb_B          149 ICIKVWDLAQQV--------VLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA-------  212 (344)
T ss_dssp             SCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------
T ss_pred             CeEEEEECCCCc--------EEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce-------
Confidence            999999987543        344443 457899999999987 588999999999999999988777654322       


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~  290 (326)
                      +...+++++|+|. ++++|++|+.||+|++||++++ +++.++..|...|++++|+|++ ++|++|+.|++|+|||++++
T Consensus       213 ~~~~~~~~~~~p~-~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          213 PGYLPTSLAWHPQ-QSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             -CCCEEEEEECSS-CTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             eeccceeeeecCC-CCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            1235889999985 4568999999999999999987 6789999999999999999997 57899999999999999998


Q ss_pred             eEEEEEcceecceEEEEEECCCCC-EEEEeccCccC
Q 020454          291 KLLGCFIGKCSGSIRSIARHPTLP-IIASCGFLEAA  325 (326)
Q Consensus       291 ~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s~D~~~  325 (326)
                      +++ .+.+| .+.|++++|+|+++ +|+|||.||.+
T Consensus       291 ~~~-~~~~H-~~~V~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          291 ELF-RSQAH-RDFVRDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             EEE-EECCC-SSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             cEE-EEcCC-CCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence            765 57888 99999999999886 67799999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.7e-38  Score=263.42  Aligned_cols=264  Identities=14%  Similarity=0.184  Sum_probs=211.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce------e
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------R   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~------~   88 (326)
                      -+|++|+.||.|+|||..++     +....+..+..  .+.++.+  ++.+.+|++|+.|+.+++|++.....      .
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~~~--~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~  147 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFTT-----NKEHAVTMPCT--WVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAAKK  147 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTC-----CEEEEEECSSS--CCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CcceEEecCCC--CEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence            67999999999999998766     33333333333  3334444  45567999999999999999864321      1


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      ..+.        .|.+.|.++.+.+        ++..+++++.|+.|++||++...        .+..+. .+...|.++
T Consensus       148 ~~~~--------~h~~~v~~~~~~~--------~~~~l~t~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~~  202 (354)
T 2pbi_B          148 KSVA--------MHTNYLSACSFTN--------SDMQILTASGDGTCALWDVESGQ--------LLQSFH-GHGADVLCL  202 (354)
T ss_dssp             EEEE--------ECSSCEEEEEECS--------SSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEE
T ss_pred             eeee--------ccCCcEEEEEEeC--------CCCEEEEEeCCCcEEEEeCCCCe--------EEEEEc-CCCCCeEEE
Confidence            1111        4567888888765        56789999999999999987543        344444 346789999


Q ss_pred             EEcCC--CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          169 KVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       169 ~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      +++|+  +++|++|+.|+.|++||+++++.+..+..|.         ..|++++|+|  ++.+|++++.|++|++||++.
T Consensus       203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---------SDVNSVRYYP--SGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCeEEEEEeC--CCCEEEEEeCCCeEEEEECCC
Confidence            99874  6899999999999999999998888776654         5689999998  456999999999999999997


Q ss_pred             CCCceeEEeec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          247 QRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       247 ~~~~~~~~~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      . +.+..+..+  ...+++++|+|++++|++|+.|+.|++||+.+++.+..+.+| .+.|++++|+|++++|++||.||.
T Consensus       272 ~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          272 D-REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             T-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSCEEEEETTSE
T ss_pred             C-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-CCcEEEEEECCCCCEEEEEcCCCC
Confidence            6 444444433  347899999999999999999999999999999999999998 999999999999999999999997


Q ss_pred             C
Q 020454          325 A  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       350 v  350 (354)
T 2pbi_B          350 L  350 (354)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.3e-38  Score=265.84  Aligned_cols=273  Identities=14%  Similarity=0.109  Sum_probs=203.9

Q ss_pred             eeeeeecC------cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee
Q 020454           15 LRALTFDS------LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (326)
Q Consensus        15 ~~l~~~~~------~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~   88 (326)
                      -+|++++.      ||.|++|+...+. ....+....  ..+...+.+++|.++.   .+++++.||+|+|||+.+++..
T Consensus        55 ~~las~s~d~~~~wd~~v~~~~~~~~~-~~~~~~~~~--~~~~~~V~~~~~s~d~---~~l~~s~dg~v~lWd~~~~~~~  128 (357)
T 4g56_B           55 ALLLAASSLSSRTWGGSIWVFKDPEGA-PNESLCTAG--VQTEAGVTDVAWVSEK---GILVASDSGAVELWEILEKESL  128 (357)
T ss_dssp             CEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEE--EECSSCEEEEEEETTT---EEEEEETTSCEEEC--------
T ss_pred             CEEEEEcCCCCccccCeEEEEECCCCC-cceeEeccc--CCCCCCEEEEEEcCCC---CEEEEECCCEEEEeecccccee
Confidence            45777776      7889999877651 111121111  1233446667776442   4778899999999999877653


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      ......    ...|.+.|.++.+.+        ++..|++++.||.|++||++...        .+..+. .+...|.++
T Consensus       129 ~~~~~~----~~~h~~~V~~v~~sp--------dg~~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~h~~~v~~v  187 (357)
T 4g56_B          129 LVNKFA----KYEHDDIVKTLSVFS--------DGTQAVSGGKDFSVKVWDLSQKA--------VLKSYN-AHSSEVNCV  187 (357)
T ss_dssp             CCCCEE----ECCCSSCEEEEEECS--------SSSEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEE
T ss_pred             EEEeec----cCCCCCCEEEEEECC--------CCCEEEEEeCCCeEEEEECCCCc--------EEEEEc-CCCCCEEEE
Confidence            322210    025668899999866        66789999999999999987543        344443 356789999


Q ss_pred             EEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          169 KVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       169 ~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      +|++++ .++++++.|+.|++||++++++........       +...+++++|+|. ++.+|++++.|+.|++||+++.
T Consensus       188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-------~~~~v~~v~~sp~-~~~~la~g~~d~~i~~wd~~~~  259 (357)
T 4g56_B          188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA-------SDTIPTSVTWHPE-KDDTFACGDETGNVSLVNIKNP  259 (357)
T ss_dssp             EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT-------CCSCEEEEEECTT-STTEEEEEESSSCEEEEESSCG
T ss_pred             EEccCCCceeeeeccCCceEEEECCCCceeeeeeecc-------ccccccchhhhhc-ccceEEEeecccceeEEECCCC
Confidence            999987 588999999999999999887765543322       2356889999985 4558999999999999999987


Q ss_pred             CCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECC-CCCEEEEeccCccC
Q 020454          248 RRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGFLEAA  325 (326)
Q Consensus       248 ~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~~  325 (326)
                       +++..+..|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +| .+.|++|+|+| ++.+|+|||.||.+
T Consensus       260 -~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~s~Dg~v  336 (357)
T 4g56_B          260 -DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTVGWDHKV  336 (357)
T ss_dssp             -GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             -cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence             6788899999999999999987 67899999999999999999887654 67 99999999999 78999999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-37  Score=264.53  Aligned_cols=272  Identities=13%  Similarity=0.147  Sum_probs=207.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeee-ecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~-~~~   93 (326)
                      -.|++|+.||.|+|||+.++     +....+..+...  +..+.|  ++++++|++|+.|+.|++|++.+...... ...
T Consensus        79 ~~l~s~s~D~~v~iWd~~~~-----~~~~~~~~h~~~--v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~  149 (380)
T 3iz6_a           79 NWIVSASQDGRLIVWNALTS-----QKTHAIKLHCPW--VMECAF--APNGQSVACGGLDSACSIFNLSSQADRDGNMPV  149 (380)
T ss_dssp             SCEEEEETTSEEEEEETTTT-----EEEEEEECCCTT--CCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred             CEEEEEeCCCeEEEEECCCC-----ccceEEecCCCC--EEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence            56999999999999999876     444444433333  333333  45677999999999999999864321110 000


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE----ccCCCceEEEE
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----VCASGTIAFSK  169 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~  169 (326)
                        ......|.+.+.++.+.+.       .+..+++++.|+.|++||+....        .+..+.    ..+...|.++.
T Consensus       150 --~~~~~gh~~~v~~~~~~~~-------~~~~l~s~s~D~~i~~wd~~~~~--------~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          150 --SRVLTGHKGYASSCQYVPD-------QETRLITGSGDQTCVLWDVTTGQ--------RISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             --CCBCCCCSSCCCCCBCCSS-------SSSCEEEECTTSCEEEECTTTCC--------EEEEECCCSSSSCCSCEEEEE
T ss_pred             --eeeccCCCcceEEEEEecC-------CCCEEEEECCCCcEEEEEcCCCc--------EEEEeecccCCCCccCeEEEE
Confidence              0001256677877776552       24579999999999999987644        333332    23466899999


Q ss_pred             EcC-CCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          170 VDI-SEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       170 ~~~-~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      +++ ++++|++|+.|+.|++||++. .+.+..+..|.         ..|++++|+|  ++++|++++.|++|++||++++
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~---------~~v~~v~~~p--~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE---------GDINSVKFFP--DGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS---------SCCCEEEECT--TSSEEEEECSSSCEEEEETTTT
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC---------CCeEEEEEec--CCCeEEEEcCCCeEEEEECCCC
Confidence            987 789999999999999999984 45566665554         5688999998  5669999999999999999987


Q ss_pred             CCceeEEeecC-------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE----cceecceEEEEEECCCCCEE
Q 020454          248 RRPVMSFDFRE-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       248 ~~~~~~~~~~~-------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~----~~~~~~~v~~l~~~p~~~~l  316 (326)
                       .++..+..+.       ..|++++|+|+|++|++|+.||.|++||+.+++.+..+    .+| .+.|++++|+|++.+|
T Consensus       282 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          282 -HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSAL  359 (380)
T ss_dssp             -EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEE
T ss_pred             -cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEE
Confidence             4555554432       24899999999999999999999999999999988877    577 9999999999999999


Q ss_pred             EEeccCccC
Q 020454          317 ASCGFLEAA  325 (326)
Q Consensus       317 ~s~s~D~~~  325 (326)
                      +|||.||.+
T Consensus       360 ~sgs~D~~i  368 (380)
T 3iz6_a          360 CTGSWDKNL  368 (380)
T ss_dssp             EEECTTSCE
T ss_pred             EEeeCCCCE
Confidence            999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-36  Score=250.73  Aligned_cols=236  Identities=16%  Similarity=0.195  Sum_probs=195.1

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ...+.++.|.  +.+++|++|+.||+|++||+.+++.+..+.        .+..++.++.+.+        +++.+++++
T Consensus        13 ~~~V~~~~fs--p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------~~~~~v~~~~~~~--------~~~~l~s~s   74 (304)
T 2ynn_A           13 SDRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIA--------RKNWIIVGS   74 (304)
T ss_dssp             CSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEG--------GGTEEEEEE
T ss_pred             CCceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCceeEEee--------ccCCcEEEEEEeC--------CCCEEEEEC
Confidence            3345555554  456699999999999999999888776665        4557888888766        567899999


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLG  209 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~  209 (326)
                      .|+.|++|++....        .+..+. .+...|.+++|+|++++|++|+.|++|++||++++. ....+..|.     
T Consensus        75 ~d~~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~-----  140 (304)
T 2ynn_A           75 DDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-----  140 (304)
T ss_dssp             TTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC-----
T ss_pred             CCCEEEEEECCCCc--------EEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC-----
Confidence            99999999987543        344444 356789999999999999999999999999998774 344455543     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCCceEEEEecC--CCCeEEEEcCCCcEEEEE
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEP--DSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~--~~~~l~~g~~dg~v~iwd  286 (326)
                          ..|.+++|+|. ++.+|++++.|++|++||++... +...+ ..+...+..++|+|  ++.+|++|+.|+.|++||
T Consensus       141 ----~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          141 ----HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             ----SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSS-CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred             ----CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCC-ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence                56899999985 45699999999999999998763 34444 35667899999987  678999999999999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++++++..+.+| ...|.+++|+|++++|++||.||.+
T Consensus       215 ~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~Dg~i  252 (304)
T 2ynn_A          215 YQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTL  252 (304)
T ss_dssp             TTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             CCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCCCeE
Confidence            9999999999998 9999999999999999999999976

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=252.15  Aligned_cols=241  Identities=14%  Similarity=0.214  Sum_probs=199.9

Q ss_pred             CCCceEEEEEeeeC--CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454           49 HSSNCVLAASIDDS--QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (326)
Q Consensus        49 ~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l  126 (326)
                      .+...+.+++|...  .++.+|++|+.|++|+||++..++.......      ..|...|.++.+.+        +...+
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l------~gh~~~v~~~~~~~--------~~~~l   95 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL------EGHQLGVVSVDISH--------TLPIA   95 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE------CCCSSCEEEEEECS--------SSSEE
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee------ccCCCCEEEEEECC--------CCCEE
Confidence            45556666666543  3466899999999999999976654333222      26678899888755        55789


Q ss_pred             EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                      ++++.|+.|++||+....        .++.+.. +...+.+++|+|++++|++|+.|+.|++||+++++....+..+.  
T Consensus        96 ~s~s~D~~i~lWd~~~~~--------~~~~~~~-~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~--  164 (321)
T 3ow8_A           96 ASSSLDAHIRLWDLENGK--------QIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG--  164 (321)
T ss_dssp             EEEETTSEEEEEETTTTE--------EEEEEEC-CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS--
T ss_pred             EEEeCCCcEEEEECCCCC--------EEEEEeC-CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC--
Confidence            999999999999987543        3444442 35678899999999999999999999999999988877766543  


Q ss_pred             CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                             ..|.+++|+|  ++++|++++.|+.|++||++++ +.+..+..|..+|++++|+|++++|++|+.||.|++||
T Consensus       165 -------~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd  234 (321)
T 3ow8_A          165 -------KFILSIAYSP--DGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD  234 (321)
T ss_dssp             -------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             -------ceEEEEEECC--CCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence                   4588999998  5679999999999999999987 67888989999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++++.+..+.+| ...|.+++|+|++++|++++.|+.+
T Consensus       235 ~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v  272 (321)
T 3ow8_A          235 VQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSV  272 (321)
T ss_dssp             TTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcE
Confidence            9999999999998 9999999999999999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5e-36  Score=249.41  Aligned_cols=267  Identities=9%  Similarity=0.092  Sum_probs=210.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..|++|+.||.|++|++.............+..  +...+.++.+.  +.+++|++|+.||+|++||+.+++.+..+.  
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s--~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--  104 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--HSHIVQDCTLT--ADGAYALSASWDKTLRLWDVATGETYQRFV--  104 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred             cEEEEecCCccEEEecCCCCCccccccceEEeC--CcccEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCCeeEEEc--
Confidence            579999999999999997541111122233433  33444455553  456699999999999999999988777665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  173 (326)
                            .|...|.++.+.+        +...+++++.|+.|++|+++..         .+..+ ..+...|.++.++|. 
T Consensus       105 ------~h~~~v~~~~~~~--------~~~~l~s~s~D~~i~vwd~~~~---------~~~~~-~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A          105 ------GHKSDVMSVDIDK--------KASMIISGSRDKTIKVWTIKGQ---------CLATL-LGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             ------CCSSCEEEEEECT--------TSCEEEEEETTSCEEEEETTSC---------EEEEE-CCCSSCEEEEEECCC-
T ss_pred             ------cCCCcEEEEEEcC--------CCCEEEEEeCCCeEEEEECCCC---------eEEEE-eccCCcEEEEEEccCC
Confidence                  5668899888755        5678999999999999997532         22222 245678999999985 


Q ss_pred             -----CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454          174 -----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (326)
Q Consensus       174 -----~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~  248 (326)
                           +.+|++++.|+.|++||+++.+....+..|.         ..|.+++|+|  ++++|++++.||+|++||+++. 
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~sp--~g~~l~s~~~dg~i~iwd~~~~-  228 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN---------SNINTLTASP--DGTLIASAGKDGEIMLWNLAAK-  228 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCC---------SCEEEEEECT--TSSEEEEEETTCEEEEEETTTT-
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC---------CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC-
Confidence                 4589999999999999999988877776654         5689999998  5679999999999999999976 


Q ss_pred             CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-------ecceEEEEEECCCCCEEEEecc
Q 020454          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      +++..+..+ ..|.+++|+|++.+|++++.+ .+++|++.....+..+..+       +...+.+++|+|++++|++|+.
T Consensus       229 ~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~  306 (319)
T 3frx_A          229 KAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT  306 (319)
T ss_dssp             EEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence            566777654 689999999999999988765 5999999988777766422       1567999999999999999999


Q ss_pred             CccC
Q 020454          322 LEAA  325 (326)
Q Consensus       322 D~~~  325 (326)
                      ||.+
T Consensus       307 Dg~i  310 (319)
T 3frx_A          307 DNVI  310 (319)
T ss_dssp             TSCE
T ss_pred             CceE
Confidence            9976

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-36  Score=256.34  Aligned_cols=272  Identities=17%  Similarity=0.181  Sum_probs=209.9

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCC----------------CCceEEEEEeeeCCCCCeEEEEecCCcEEE
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH----------------SSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i   79 (326)
                      ++++.+.++.+++|++..+     +....+..+.                ....+.+++|  ++++++|++|+.||.|++
T Consensus        77 ~~la~g~~~~v~i~~~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~i  149 (393)
T 1erj_A           77 EYLATGCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRI  149 (393)
T ss_dssp             SEEEEECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEE--CTTSSEEEEEETTSCEEE
T ss_pred             CEEEEEcCCcEEEEEecCC-----CEEEEecCccccccccccccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEE
Confidence            3444445789999999876     3333332211                1112444555  456779999999999999


Q ss_pred             EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      ||+.+++.+..+.        .|...|.++.+.+        ++..+++++.|+.|++||+....        ....+. 
T Consensus       150 wd~~~~~~~~~~~--------~h~~~v~~~~~~p--------~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~-  204 (393)
T 1erj_A          150 WDIENRKIVMILQ--------GHEQDIYSLDYFP--------SGDKLVSGSGDRTVRIWDLRTGQ--------CSLTLS-  204 (393)
T ss_dssp             EETTTTEEEEEEC--------CCSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTTE--------EEEEEE-
T ss_pred             EECCCCcEEEEEc--------cCCCCEEEEEEcC--------CCCEEEEecCCCcEEEEECCCCe--------eEEEEE-
Confidence            9999888766655        5668899999866        56789999999999999986533        222333 


Q ss_pred             cCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454          160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (326)
Q Consensus       160 ~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~  238 (326)
                       ....+.+++++| ++++|++|+.|+.|++||+++++.+..+......  ...+...|++++|+|  ++++|++++.|++
T Consensus       205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~~~--~g~~l~s~s~d~~  279 (393)
T 1erj_A          205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVFTR--DGQSVVSGSLDRS  279 (393)
T ss_dssp             -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred             -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC--CCCCCCCEEEEEECC--CCCEEEEEeCCCE
Confidence             356799999999 8899999999999999999998876665322110  012446799999998  5679999999999


Q ss_pred             EEEEeCCCCC-----------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454          239 VRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (326)
Q Consensus       239 v~iwd~~~~~-----------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  307 (326)
                      |++||++...           .....+..|...|.+++|+|++.+|++|+.||.|++||+++++++..+.+| .+.|.++
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v~~v  358 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISV  358 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCEEEE
Confidence            9999987531           234566788899999999999999999999999999999999999999998 9999999


Q ss_pred             EECC------CCCEEEEeccCccC
Q 020454          308 ARHP------TLPIIASCGFLEAA  325 (326)
Q Consensus       308 ~~~p------~~~~l~s~s~D~~~  325 (326)
                      +|+|      ++++|+|||.||.+
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg~i  382 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDCKA  382 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EecCCcCcCCCCCEEEEECCCCcE
Confidence            9986      67899999999976

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-36  Score=274.68  Aligned_cols=289  Identities=12%  Similarity=0.131  Sum_probs=217.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .++++++.||.|++||....     +....+..  +...+.++.|.  +++++|++|+.||+|++||+.+++.+..+...
T Consensus       161 ~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~--H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~  231 (611)
T 1nr0_A          161 FRIISGSDDNTVAIFEGPPF-----KFKSTFGE--HTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD  231 (611)
T ss_dssp             CEEEEEETTSCEEEEETTTB-----EEEEEECC--CSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred             eEEEEEeCCCeEEEEECCCC-----eEeeeecc--ccCceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence            57999999999999998765     45445544  34445555554  45669999999999999999888876655310


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc------------------------ccccc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS  150 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~------------------------~~~~~  150 (326)
                      . .....|.+.|.++.+.+        ++..|++++.|+.|++||+.....                        ++...
T Consensus       232 ~-~~~~~h~~~V~~v~~sp--------dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          232 S-LKNVAHSGSVFGLTWSP--------DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             T-SSSCSSSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             c-ccccccCCCEEEEEECC--------CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence            0 00114668899999766        667899999999999999875321                        22345


Q ss_pred             cceEEEEEcc----------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee-cCCCCC-------------
Q 020454          151 CSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKN-------------  206 (326)
Q Consensus       151 ~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~-------------  206 (326)
                      ++.+++|+..          +...|.+++|+|++++|++++.|++|++||+.+++..... ..|...             
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~  382 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF  382 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence            6677788753          4457999999999999999999999999999876543322 111000             


Q ss_pred             -----------------C------------------------------------------CCcCCCCceeeeEEeecCCC
Q 020454          207 -----------------S------------------------------------------LGIFTPTWFTSAAFLSIDDH  227 (326)
Q Consensus       207 -----------------~------------------------------------------~~~~~~~~v~~~~~~p~~~~  227 (326)
                                       .                                          ..+.+...+.+++|+|  ++
T Consensus       383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp--dg  460 (611)
T 1nr0_A          383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN--DK  460 (611)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT--TS
T ss_pred             EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC--CC
Confidence                             0                                          0001123467889988  67


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCC-ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-CeEEEE--Ecceecce
Q 020454          228 RKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGC--FIGKCSGS  303 (326)
Q Consensus       228 ~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~--~~~~~~~~  303 (326)
                      ++|++++.|++|++||+..... .+.. ..|...|++++|+|+|++|++++.|+.|++||+.+ ++++..  +.+| ...
T Consensus       461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-~~~  538 (611)
T 1nr0_A          461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAK  538 (611)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSC
T ss_pred             CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-ccc
Confidence            7999999999999999986421 1233 57889999999999999999999999999999987 666543  3347 999


Q ss_pred             EEEEEECCCCCEEEEeccCccC
Q 020454          304 IRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |++++|+|++++|+++|.|+.+
T Consensus       539 V~~v~fspdg~~lasgs~D~~v  560 (611)
T 1nr0_A          539 VACVSWSPDNVRLATGSLDNSV  560 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCE
T ss_pred             eeEEEECCCCCEEEEEECCCcE
Confidence            9999999999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-35  Score=244.73  Aligned_cols=265  Identities=14%  Similarity=0.120  Sum_probs=211.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.||.|++|+...+     +....+..  +...+..+.|.  +++++|++|+.||.|++||+.+++.+..+.  
T Consensus        36 ~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~--h~~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--  104 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYDG-----KFEKTISG--HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLK--  104 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEEEECC--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             CEEEEeeCCCeEEEEeCCCc-----ccchhhcc--CCCceEEEEEc--CCCCEEEEECCCCEEEEEECCCCcEEEEEc--
Confidence            46899999999999999876     44444443  33445555554  456799999999999999999888777665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...|.++.+.+        ++..+++++.||.|++||+....        .+..+. .+...|.++.|+|++
T Consensus       105 ------~~~~~v~~~~~~~--------~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~  161 (312)
T 4ery_A          105 ------GHSNYVFCCNFNP--------QSNLIVSGSFDESVRIWDVKTGK--------CLKTLP-AHSDPVSAVHFNRDG  161 (312)
T ss_dssp             ------CCSSCEEEEEECS--------SSSEEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred             ------CCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCE--------EEEEec-CCCCcEEEEEEcCCC
Confidence                  4557888888755        56789999999999999987543        333333 346789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ++|++++.|+.|++||+++++.+..+....        ...+..++|+|  ++++|++++.|+.|++||+++. +.+..+
T Consensus       162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~-~~~~~~  230 (312)
T 4ery_A          162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKG-KCLKTY  230 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCSS--------CCCEEEEEECT--TSSEEEEEETTTEEEEEETTTT-EEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeEEeccC--------CCceEEEEECC--CCCEEEEEcCCCeEEEEECCCC-cEEEEE
Confidence            999999999999999999888766653321        24578899998  5669999999999999999977 567777


Q ss_pred             eecCCce---EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec--cCccC
Q 020454          255 DFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--FLEAA  325 (326)
Q Consensus       255 ~~~~~~i---~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s--~D~~~  325 (326)
                      ..|....   ......+++.+|++|+.||.|++||+++++++..+.+| ...|.+++|+|++++|++++  .|+.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i  305 (312)
T 4ery_A          231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALENDKTI  305 (312)
T ss_dssp             CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred             EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-CCcEEEEeecCcCCceEEEEccCCccE
Confidence            7665543   22233467889999999999999999999999999998 99999999999999999997  57764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-36  Score=249.06  Aligned_cols=273  Identities=14%  Similarity=0.093  Sum_probs=198.2

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc-------cee
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-------DLR   88 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-------~~~   88 (326)
                      .|++|+.||.|++|++..+   .......+....+...+.++.|.  +.+++|++|+.|++|+||++...       +.+
T Consensus        26 ~las~~~D~~i~lw~~~~~---~~~~~~~~~~~~h~~~v~~v~~s--p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  100 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL  100 (330)
T ss_dssp             EEEEEESSSCEEEEECSSS---CCEEEEEECTTCCCSCEEEEEEC--TTSSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred             EEEEEcCCCEEEEEEecCC---CeEEEEEEecCCccCCEEEEEEC--CCCCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence            8999999999999999864   11222233222244556666664  45669999999999999998532       122


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      ..+.        .|.+.|.++.+.+        ++.+|++++.|+.|++|++.....    ....+..+. .+...|.++
T Consensus       101 ~~~~--------~h~~~V~~v~~sp--------~g~~las~s~D~~v~iwd~~~~~~----~~~~~~~~~-~h~~~v~~v  159 (330)
T 2hes_X          101 AIIE--------GHENEVKGVAWSN--------DGYYLATCSRDKSVWIWETDESGE----EYECISVLQ-EHSQDVKHV  159 (330)
T ss_dssp             EEEC------------CEEEEEECT--------TSCEEEEEETTSCEEEEECCTTCC----CCEEEEEEC-CCSSCEEEE
T ss_pred             EEEc--------CCCCcEEEEEECC--------CCCEEEEEeCCCEEEEEeccCCCC----CeEEEEEec-cCCCceEEE
Confidence            2222        5668899999765        567899999999999999853210    011233333 356789999


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCc--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      +|+|++++|++|+.|++|++||+.++  +++..+..|.         ..|.+++|+|..++.+|++++.|++|++||++.
T Consensus       160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE---------GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC---------CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            99999999999999999999998765  4566666654         568999999965466899999999999999875


Q ss_pred             CCC-------ceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe--EEEEE-cceecc-eEEEEEECC--C
Q 020454          247 QRR-------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCF-IGKCSG-SIRSIARHP--T  312 (326)
Q Consensus       247 ~~~-------~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~--~~~~~-~~~~~~-~v~~l~~~p--~  312 (326)
                      ...       ....+.. |...|.+++|++++ +|++++.||.|++||..+++  .+... .+| .. .|.+++|+|  +
T Consensus       231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~~~~~~  308 (330)
T 2hes_X          231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWLELNG  308 (330)
T ss_dssp             ECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEEEC----
T ss_pred             CCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEEEecCCC
Confidence            311       1223333 78899999999765 89999999999999998874  34333 566 66 899999999  6


Q ss_pred             CCEEEEeccCccC
Q 020454          313 LPIIASCGFLEAA  325 (326)
Q Consensus       313 ~~~l~s~s~D~~~  325 (326)
                      +++|++||.||.+
T Consensus       309 ~~~las~s~Dg~v  321 (330)
T 2hes_X          309 KTILATGGDDGIV  321 (330)
T ss_dssp             -CCEEEEETTSEE
T ss_pred             ceEEEEecCCCcE
Confidence            8899999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=249.55  Aligned_cols=272  Identities=13%  Similarity=0.097  Sum_probs=204.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceee-eccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVE-RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      -.|++|+.||.|+||++.++     .... ......+...+.++.|.  +.+++|++|+.|++|++|+...+........
T Consensus        29 ~~las~~~D~~i~iw~~~~~-----~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~  101 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTEGD-----SWICKSVLSEGHQRTVRKVAWS--PCGNYLASASFDATTCIWKKNQDDFECVTTL  101 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETT-----EEEEEEEECSSCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred             CEEEEEcCCCeEEEEEcCCC-----cceeeeeeccccCCcEEEEEEC--CCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence            56899999999999999875     2211 11112344555566654  4567999999999999999876653221111


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                            ..|...|.++.+.+        ++..|++++.|+.|++|++.....     ...+..+. .+...|.+++|+|+
T Consensus       102 ------~~h~~~v~~v~~sp--------~~~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~-~h~~~v~~~~~~p~  161 (345)
T 3fm0_A          102 ------EGHENEVKSVAWAP--------SGNLLATCSRDKSVWVWEVDEEDE-----YECVSVLN-SHTQDVKHVVWHPS  161 (345)
T ss_dssp             ------CCCSSCEEEEEECT--------TSSEEEEEETTSCEEEEEECTTSC-----EEEEEEEC-CCCSCEEEEEECSS
T ss_pred             ------cCCCCCceEEEEeC--------CCCEEEEEECCCeEEEEECCCCCC-----eEEEEEec-CcCCCeEEEEECCC
Confidence                  25668899999766        567999999999999999875331     11233332 45678999999999


Q ss_pred             CCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--  249 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--  249 (326)
                      +++|++|+.|+.|++||+++++.  ...+.+|.         ..|++++|+|  ++++|++++.|++|++||......  
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---------~~v~~l~~sp--~g~~l~s~s~D~~v~iW~~~~~~~~~  230 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHE---------STVWSLAFDP--SGQRLASCSDDRTVRIWRQYLPGNEQ  230 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---------CceEEEEECC--CCCEEEEEeCCCeEEEeccccCCCCc
Confidence            99999999999999999987653  34555543         5699999998  567999999999999999643211  


Q ss_pred             ------------ceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe--------EE-EEEcceecceEEEE
Q 020454          250 ------------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------LL-GCFIGKCSGSIRSI  307 (326)
Q Consensus       250 ------------~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~--------~~-~~~~~~~~~~v~~l  307 (326)
                                  ++..+.. |...|.+++|+|++..|++++.|+.|++|+...+.        .. ....+| ...|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v  309 (345)
T 3fm0_A          231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNCV  309 (345)
T ss_dssp             CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEEE
T ss_pred             cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeEe
Confidence                        1222333 77899999999999999999999999999987542        11 223477 9999999


Q ss_pred             EECCCCC-EEEEeccCccC
Q 020454          308 ARHPTLP-IIASCGFLEAA  325 (326)
Q Consensus       308 ~~~p~~~-~l~s~s~D~~~  325 (326)
                      +|+|+++ +|||||.||.+
T Consensus       310 ~~~p~~~~~laS~s~Dg~v  328 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEV  328 (345)
T ss_dssp             EECSSSTTEEEEEETTSCE
T ss_pred             EEeCCCceEEEEcCCCCcE
Confidence            9999874 99999999976

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.2e-35  Score=248.10  Aligned_cols=267  Identities=11%  Similarity=0.059  Sum_probs=202.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCC--CcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      -.|++|+.||.|++|++......  .......+.  .+...+.++.+.  +.+.+|++|+.||+|++||+.+++.+..+.
T Consensus        40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~  115 (343)
T 2xzm_R           40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALS--QENCFAISSSWDKTLRLWDLRTGTTYKRFV  115 (343)
T ss_dssp             CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEEC--SSTTEEEEEETTSEEEEEETTSSCEEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            57999999999999999764111  011122233  333445555554  456689999999999999999888776665


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceEEEEE
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV  170 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~  170 (326)
                              .|...|.++.+.+        ++..+++++.|+.|++|++....         .....  ..+...|.+++|
T Consensus       116 --------~h~~~v~~v~~sp--------~~~~l~s~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R          116 --------GHQSEVYSVAFSP--------DNRQILSAGAEREIKLWNILGEC---------KFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             --------CCCSCEEEEEECS--------STTEEEEEETTSCEEEEESSSCE---------EEECCTTTSCSSCEEEEEE
T ss_pred             --------CCCCcEEEEEECC--------CCCEEEEEcCCCEEEEEeccCCc---------eeeeecccCCCceeeeeee
Confidence                    5668899999765        56789999999999999976321         11111  134567999999


Q ss_pred             cCCC----------CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          171 DISE----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       171 ~~~~----------~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                      +|++          .+|++++.|+.|++||. ..+....+..|.         ..|++++|+|  ++++|++++.|+.|+
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~---------~~v~~~~~s~--~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE---------SNVNHLSISP--NGKYIATGGKDKKLL  238 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS---------SCEEEEEECT--TSSEEEEEETTCEEE
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc---------ccceEEEECC--CCCEEEEEcCCCeEE
Confidence            9986          78999999999999994 445555555543         5689999998  567999999999999


Q ss_pred             EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE--EEc-----------ceecceEEEE
Q 020454          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFI-----------GKCSGSIRSI  307 (326)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~--~~~-----------~~~~~~v~~l  307 (326)
                      +||++....+...+. +...|.+++|+|++.++++| .|+.|++||+.+++...  .+.           +| ...|.++
T Consensus       239 iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~  315 (343)
T 2xzm_R          239 IWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSL  315 (343)
T ss_dssp             EEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEE
T ss_pred             EEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEE
Confidence            999965534444443 45679999999999887755 57789999998876543  333           55 7889999


Q ss_pred             EECCCCCEEEEeccCccC
Q 020454          308 ARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       308 ~~~p~~~~l~s~s~D~~~  325 (326)
                      +|+|++++|++|+.||.+
T Consensus       316 ~~sp~g~~l~sg~~Dg~v  333 (343)
T 2xzm_R          316 AWNALGKKLFAGFTDGVI  333 (343)
T ss_dssp             EECSSSCCEEEEETTSEE
T ss_pred             EECCCCCeEEEecCCceE
Confidence            999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-36  Score=257.63  Aligned_cols=235  Identities=11%  Similarity=0.189  Sum_probs=201.3

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ...+.++.|.  +.+++|++|+.||+|++||+.+++....+.        .|.+.|.++.+.+        ++..+++++
T Consensus       108 ~~~V~~~~~~--p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--------~h~~~V~~v~~~~--------~~~~l~sgs  169 (410)
T 1vyh_C          108 RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLK--------GHTDSVQDISFDH--------SGKLLASCS  169 (410)
T ss_dssp             SSCEEEEEEC--SSSSEEEEEESSSCEEEEETTTCCCCEEEC--------CCSSCEEEEEECT--------TSSEEEEEE
T ss_pred             CCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------ccCCcEEEEEEcC--------CCCEEEEEe
Confidence            3445555554  456699999999999999999988877665        5668899998755        567899999


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      .||.|++||+....        .++.+. .+...|.+++|+|++++|++|+.|++|++||+++++.+..+..|.      
T Consensus       170 ~D~~i~iwd~~~~~--------~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~------  234 (410)
T 1vyh_C          170 ADMTIKLWDFQGFE--------CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR------  234 (410)
T ss_dssp             TTSCCCEEETTSSC--------EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS------
T ss_pred             CCCeEEEEeCCCCc--------eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC------
Confidence            99999999986533        222222 346789999999999999999999999999999999888777654      


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCC--------------------C
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD--------------------S  270 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~--------------------~  270 (326)
                         .+|..+.|+|  ++.+|++++.|++|++||+++. .....+..|...|.+++|+|+                    +
T Consensus       235 ---~~v~~~~~~~--~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  308 (410)
T 1vyh_C          235 ---EWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG  308 (410)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             ---ccEEEEEECC--CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence               5688999987  5679999999999999999977 667888899999999999996                    6


Q ss_pred             CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       271 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+|++|+.||.|++||+++++++..+.+| ...|++++|+|++++|++||.||.+
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i  362 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTL  362 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            78999999999999999999999999998 9999999999999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-35  Score=252.02  Aligned_cols=283  Identities=10%  Similarity=0.034  Sum_probs=216.7

Q ss_pred             eeeeeecCcccEEEEEecCCcC-CCcceeeeccCCCCCceEEEEEeeeC--CCC---CeEEEEecCCcEEEEeccccce-
Q 020454           15 LRALTFDSLGLIKVIEARGEHG-GVPKVVERWGDPHSSNCVLAASIDDS--QND---PLLAVARKNGLTDILNPLNGDL-   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~g~~dg~i~i~~~~~~~~-   87 (326)
                      -.+++++.||.|++|++..+.. ........+..+  ...+.++.|...  ..+   .+|++++.||.|++|++.+++. 
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~  104 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET  104 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC--CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc
Confidence            6899999999999999987610 011133344333  334555555443  225   6899999999999999987775 


Q ss_pred             ----eeeecccCCCCCCCC--CCCeeeeecc----cccccccCCCCce-EEEEecCCcEEEEEccc------cccccccc
Q 020454           88 ----RVAISNAGDSGAQPE--DDGIVGLHLF----KRQREESSSRSRT-LLTCTTKGKASMRSIEV------TKVSAESS  150 (326)
Q Consensus        88 ----~~~~~~~~~~~~~~~--~~~i~~l~~~----~~~~~~~~~~~~~-l~~~~~~g~v~i~~~~~------~~~~~~~~  150 (326)
                          ...+...     ..+  ...|.++.+.    +        ++.. +++++.||.|++|++..      .....-..
T Consensus       105 ~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A          105 KKVIFEKLDLL-----DSDMKKHSFWALKWGASNDR--------LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             CCEEEEEECCS-----CTTGGGSCEEEEEEECCC------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             ccccceeeccc-----ccccCCCcEEEEEEeeccCC--------CCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence                4444421     011  4789989886    4        5667 99999999999999886      33211011


Q ss_pred             cceEEEEE------ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC---CCCCCCCcCCCCceeeeEE
Q 020454          151 CSTVKSWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP---PPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       151 ~~~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~  221 (326)
                         ...+.      ..+...|.+++|+|++ +|++++.|+.|++||+++++.+..+..   |...      ...|.+++|
T Consensus       172 ---~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~------~~~i~~i~~  241 (397)
T 1sq9_A          172 ---TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN------SNSIRSVKF  241 (397)
T ss_dssp             ---EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC------CCCEEEEEE
T ss_pred             ---cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc------CCccceEEE
Confidence               11222      2356789999999999 999999999999999999988887765   4100      256899999


Q ss_pred             eecCCCcEEEEEeCC---CeEEEEeCCCCCCceeEEee-------------cCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454          222 LSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGSGDLASV  285 (326)
Q Consensus       222 ~p~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~-------------~~~~i~~v~~s~~~~~l~~g~~dg~v~iw  285 (326)
                      +|  ++++|++++.|   +.|++||+++. +++..+..             |...|.+++|+|++++|++++.||.|++|
T Consensus       242 ~~--~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          242 SP--QGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             CS--STTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             CC--CCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            98  46699999999   99999999987 67888887             89999999999999999999999999999


Q ss_pred             ECCCCeEEEEEc------ce--------------ecceEEEEEECCCC----------CEEEEeccCccC
Q 020454          286 DIRTGKLLGCFI------GK--------------CSGSIRSIARHPTL----------PIIASCGFLEAA  325 (326)
Q Consensus       286 d~~~~~~~~~~~------~~--------------~~~~v~~l~~~p~~----------~~l~s~s~D~~~  325 (326)
                      |+++++++..+.      +|              |..+|++++|+|++          ++|++++.||.+
T Consensus       319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence            999999999988      53              27899999999998          799999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-34  Score=258.62  Aligned_cols=258  Identities=15%  Similarity=0.219  Sum_probs=209.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..+++++.+|.|++|+..+.     .+ ..+..  +...+.++.+  ++++++|++|+.||.|++|+. +++.+..+.  
T Consensus       316 ~~l~t~~~d~~i~~w~~~~~-----~~-~~~~~--~~~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~--  382 (577)
T 2ymu_A          316 QTIASASDDKTVKLWNRNGQ-----HL-QTLTG--HSSSVWGVAF--SPDGQTIASASDDKTVKLWNR-NGQLLQTLT--  382 (577)
T ss_dssp             SEEEEEETTSCEEEEETTSC-----EE-EEECC--CSSCEEEEEE--CTTSSEEEEEETTSEEEEEET-TCCEEEEEE--
T ss_pred             CEEEEEeCCCeEEEEeCCCC-----ee-EEEeC--CCCCEEEEEE--CCCCCEEEEEeCCCEEEEEcC-CCCEEEEec--
Confidence            57889999999999998765     22 22322  2334444444  455668999999999999997 566555554  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...|.++.+.+        ++..+++++.|+.|++|+....         .++.+. .+...|.+++|+|++
T Consensus       383 ------~~~~~v~~~~~s~--------dg~~l~~~~~d~~v~~~~~~~~---------~~~~~~-~~~~~v~~~~~s~d~  438 (577)
T 2ymu_A          383 ------GHSSSVRGVAFSP--------DGQTIASASDDKTVKLWNRNGQ---------LLQTLT-GHSSSVWGVAFSPDD  438 (577)
T ss_dssp             ------CCSSCEEEEEECT--------TSSCEEEEETTSEEEEECTTCC---------EEEEEE-CCSSCEEEEEECTTS
T ss_pred             ------CCCCCeEEEEECC--------CCCEEEEEeCCCEEEEEeCCCC---------EEEEec-CCCCCeEEEEECCCC
Confidence                  4557899888755        5678999999999999985321         233333 356789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ++|++++.|+.|++||.. ++.+..+..|.         ..|++++|+|  ++++|++++.|+.|++||.. + +.+..+
T Consensus       439 ~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~---------~~v~~~~~sp--d~~~las~~~d~~i~iw~~~-~-~~~~~~  504 (577)
T 2ymu_A          439 QTIASASDDKTVKLWNRN-GQLLQTLTGHS---------SSVRGVAFSP--DGQTIASASDDKTVKLWNRN-G-QLLQTL  504 (577)
T ss_dssp             SEEEEEETTSEEEEEETT-SCEEEEEECCS---------SCEEEEEECT--TSCEEEEEETTSEEEEEETT-S-CEEEEE
T ss_pred             CEEEEEcCCCEEEEEECC-CCEEEEEcCCC---------CCEEEEEEcC--CCCEEEEEeCCCEEEEEcCC-C-CEEEEE
Confidence            999999999999999964 55555555543         5688999998  56799999999999999964 4 568889


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..|...|++++|+|++++|++++.||.|++||. +++++..+.+| .+.|++++|+|++++|+|+|.|+.+
T Consensus       505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h-~~~v~~~~fs~dg~~l~s~~~D~~i  573 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDGQTIASASSDKTV  573 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence            999999999999999999999999999999995 68889999998 9999999999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-34  Score=246.84  Aligned_cols=264  Identities=15%  Similarity=0.151  Sum_probs=213.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.+|.|++|++.++     +....+.. .+...+.+++|.  +++++|++|+.||.|++||+.+++.+..+.  
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~-----~~~~~~~~-~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--  173 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSG-----SVSALAET-DESTYVASVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTMA--  173 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTC-----CEEEEEEC-CTTCCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred             CCEEEEECCCeEEEeeCCCC-----cEeEeeec-CCCCCEEEEEEC--CCCCEEEEECCCCeEEEEECcCCeEEEEec--
Confidence            45899999999999999877     33333332 234455556554  456799999999999999999888776665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...|.++.+          ++..+++++.||.|++|++....       ..+..+. .+...|.+++|+|++
T Consensus       174 ------~~~~~v~~~~~----------~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~  229 (401)
T 4aez_A          174 ------GHQARVGCLSW----------NRHVLSSGSRSGAIHHHDVRIAN-------HQIGTLQ-GHSSEVCGLAWRSDG  229 (401)
T ss_dssp             ------CCSSCEEEEEE----------ETTEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred             ------CCCCceEEEEE----------CCCEEEEEcCCCCEEEEecccCc-------ceeeEEc-CCCCCeeEEEEcCCC
Confidence                  55678998887          34689999999999999987432       1333443 357789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEEEeCCCCCCcee
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~  252 (326)
                      ++|++|+.|+.|++||+++++.+..+..+.         ..|.+++|+|. ...++++++  .|+.|++||++++ +++.
T Consensus       230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~p~-~~~ll~~~~gs~d~~i~i~d~~~~-~~~~  298 (401)
T 4aez_A          230 LQLASGGNDNVVQIWDARSSIPKFTKTNHN---------AAVKAVAWCPW-QSNLLATGGGTMDKQIHFWNAATG-ARVN  298 (401)
T ss_dssp             SEEEEEETTSCEEEEETTCSSEEEEECCCS---------SCCCEEEECTT-STTEEEEECCTTTCEEEEEETTTC-CEEE
T ss_pred             CEEEEEeCCCeEEEccCCCCCccEEecCCc---------ceEEEEEECCC-CCCEEEEecCCCCCEEEEEECCCC-CEEE
Confidence            999999999999999999988887776544         56889999985 344777765  7999999999977 5666


Q ss_pred             EEeecCCceEEEEecCCCCeEEE--EcCCCcEEEEECCCCeEEE--EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~--g~~dg~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+. +...|.+++|+|+++++++  |+.||.|++||+.+++...  .+.+| .+.|.+++|+|++++|++++.||.+
T Consensus       299 ~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          299 TVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             EEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEE
T ss_pred             EEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcE
Confidence            775 5578999999999999998  5589999999999976554  46687 9999999999999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-34  Score=247.30  Aligned_cols=263  Identities=14%  Similarity=0.142  Sum_probs=210.3

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~   96 (326)
                      +++.+.|+.|+|||+.++     ++...+..+.+...+.+++|.  +++++|++|+.||+|+|||+++++.+..+.    
T Consensus       118 ~lAvgld~tV~lWd~~tg-----~~~~~~~~~~~~~~V~sv~fs--pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~----  186 (420)
T 4gga_A          118 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT----  186 (420)
T ss_dssp             EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEEC----
T ss_pred             EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCcEEEEEEC--CCCCEEEEEECCCeEEEEEcCCCcEEEEEe----
Confidence            566667999999999987     454444444555566666664  456799999999999999999988877665    


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (326)
                          .|...+.++.+          +...+++++.|+.+.+|+......       .+..+. .+...+..+.++|++++
T Consensus       187 ----~h~~~v~~~s~----------~~~~l~sgs~d~~i~~~d~~~~~~-------~~~~~~-~h~~~~~~~~~~~~g~~  244 (420)
T 4gga_A          187 ----SHSARVGSLSW----------NSYILSSGSRSGHIHHHDVRVAEH-------HVATLS-GHSQEVCGLRWAPDGRH  244 (420)
T ss_dssp             ----CCSSCEEEEEE----------ETTEEEEEETTSEEEEEETTSSSC-------EEEEEE-CCSSCEEEEEECTTSSE
T ss_pred             ----CCCCceEEEee----------CCCEEEEEeCCCceeEeeecccce-------eeEEec-ccccceeeeeecCCCCe
Confidence                55677887775          457899999999999999765332       333343 35678999999999999


Q ss_pred             EEEecCCCeEEEEECCCceee----eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE--eCCCeEEEEeCCCCCCc
Q 020454          177 SLFGGKGVEVNVWDLDKCEKI----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       177 l~sg~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~--~~dg~v~iwd~~~~~~~  250 (326)
                      +++++.|+.+++||..+++..    .....         +...|.+++|+|.. ..+++++  +.|++|++||++++ .+
T Consensus       245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~---------~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~-~~  313 (420)
T 4gga_A          245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---------HQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSG-AC  313 (420)
T ss_dssp             EEEEETTSCEEEEESSCCSSCSCCSEEECC---------CSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTT-EE
T ss_pred             eeeeeccccceEEeeccccccceeeeeecc---------cCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCcc-cc
Confidence            999999999999999876532    22222         33568999999963 4466654  57999999999987 55


Q ss_pred             eeEEeecCCceEEEEecCCCCeEEEEc--CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          251 VMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ...+..+ ..+.++.|+|+++.+++++  .||.|++||+++++++..+.+| .+.|++++|+|++++|+|||.||++
T Consensus       314 ~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          314 LSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETL  388 (420)
T ss_dssp             EEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEE
T ss_pred             ceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeE
Confidence            6666555 6788999999999988654  7999999999999999999998 9999999999999999999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-34  Score=245.05  Aligned_cols=282  Identities=15%  Similarity=0.204  Sum_probs=215.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCC--CCeEEEEecCCcEEEEeccccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      ..+++++.+|.|++|++..+  +..+....+..+.+...+.+++|.....  +++|++|+.||.|++||+.+++.+..+.
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred             ceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence            55788888889999999866  2222333344444556677777766543  6799999999999999999888777665


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceEEEEE
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV  170 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~  170 (326)
                              .+...|.++.+.+.       +...+++++.||.|++|++....        .+..+.  ..+...|.+++|
T Consensus       113 --------~~~~~i~~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A          113 --------GHGNAINELKFHPR-------DPNLLLSVSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             --------SCCSCEEEEEECSS-------CTTEEEEEETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEEE
T ss_pred             --------CCCCcEEEEEECCC-------CCCEEEEEeCCCeEEEEEeecCe--------EEEEecccccccCceeEEEE
Confidence                    45688999987541       34689999999999999987543        344442  245778999999


Q ss_pred             cCCCCEEEEecCCCeEEEEECCCceeeeeecCC-------------------CCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------------------PKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~p~~~~~~l~  231 (326)
                      +|++++|++++.|+.|++||+++++....+...                   ........+...|.+++|+    +++++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~  245 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----GDLIL  245 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----TTEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----CCEEE
Confidence            999999999999999999999987544322210                   0000001144678999997    33999


Q ss_pred             EEeCCCeEEEEeCCCCCC-------------ceeEEeecCCceEEEEecCC--CCeEEEEcCCCcEEEEECCCCe----E
Q 020454          232 AGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGK----L  292 (326)
Q Consensus       232 ~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~~~i~~v~~s~~--~~~l~~g~~dg~v~iwd~~~~~----~  292 (326)
                      +++.|+.|++||++....             .+..+..|...|++++|+|+  +++|++|+.||.|++||+++++    .
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred             EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence            999999999999886532             25667788889999999999  9999999999999999999875    3


Q ss_pred             EEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454          293 LGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       293 ~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ...+.+| +...|++++|+|++++|++++.||.+
T Consensus       326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  359 (366)
T 3k26_A          326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI  359 (366)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence            4466654 15899999999999999999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-34  Score=244.40  Aligned_cols=276  Identities=13%  Similarity=0.128  Sum_probs=218.8

Q ss_pred             eeeeecCcccEEEEEe----cCCcCCCcc--eeeeccC--C------CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEe
Q 020454           16 RALTFDSLGLIKVIEA----RGEHGGVPK--VVERWGD--P------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILN   81 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~----~~~~~~~~~--~~~~~~~--~------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~   81 (326)
                      .+++++.+|.|++|++    .++ .....  ....+..  .      .+...+.++.|.  +++++|++|+.||.|++||
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i~~  136 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEG-KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS--HDGNSIVTGVENGELRLWN  136 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEEC--TTSSEEEEEETTSCEEEEE
T ss_pred             EEEEecCCceEEEEEEecccCCc-cccccccccccccccccccccccCCCCceEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence            7999999999999999    665 10000  1111111  1      123355566654  4567999999999999999


Q ss_pred             ccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------
Q 020454           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------  145 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------  145 (326)
                      . +++.+..+.        .+...|.++.+.+        ++..+++++.||.+++|++.....                
T Consensus       137 ~-~~~~~~~~~--------~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          137 K-TGALLNVLN--------FHRAPIVSVKWNK--------DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             T-TSCEEEEEC--------CCCSCEEEEEECT--------TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             C-CCCeeeecc--------CCCccEEEEEECC--------CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            4 666655554        4567899998765        567899999999999999864321                


Q ss_pred             ---------------------ccccccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCc
Q 020454          146 ---------------------SAESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (326)
Q Consensus       146 ---------------------~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~  194 (326)
                                           +.+..++.+++|+...          ...|.+++|+|++++|++++.|+.|++||++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred             ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                                 1233467788888653          346899999999999999999999999999998


Q ss_pred             eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE
Q 020454          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY  274 (326)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~  274 (326)
                      +.+..+..+.         ..|.+++|+|  ++ ++++++.|+.|++||+++. +.+..+..|...|.+++|+|++++|+
T Consensus       280 ~~~~~~~~~~---------~~i~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          280 NSQNCFYGHS---------QSIVSASWVG--DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             SCSEEECCCS---------SCEEEEEEET--TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred             ccceEecCCC---------ccEEEEEECC--CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEE
Confidence            8877765543         5688999998  45 9999999999999999977 56788888899999999999999999


Q ss_pred             EEcCCCcEEEEECCCCe--------------------EEEEEcceecc--eEEEEEECCCCCEEEEeccCccC
Q 020454          275 IGNGSGDLASVDIRTGK--------------------LLGCFIGKCSG--SIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       275 ~g~~dg~v~iwd~~~~~--------------------~~~~~~~~~~~--~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++.||.|++||+++++                    ++..+.+| ..  .|++++|+|++++|++++.||.+
T Consensus       347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS-QDNDYIFDLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             EEETTSCEEEEECHHHHC--------------CEECCEEEEECCT-TCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred             EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc-ccCCceEEEEccCCCceEEEEecCceE
Confidence            99999999999999888                    88899987 66  99999999999999999999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=250.12  Aligned_cols=281  Identities=10%  Similarity=0.099  Sum_probs=216.4

Q ss_pred             eeeee----------cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-
Q 020454           16 RALTF----------DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-   84 (326)
Q Consensus        16 ~l~~~----------~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-   84 (326)
                      .++++          +.+|.|++|++..+...  +....+   .+...+.+++|  ++++++|++|+.||.|++|++.+ 
T Consensus        27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~~~~~---~~~~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~   99 (416)
T 2pm9_A           27 LLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KPIASL---QVDSKFNDLDW--SHNNKIIAGALDNGSLELYSTNEA   99 (416)
T ss_dssp             EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SCSCCC---CCSSCEEEEEE--CSSSSCEEEEESSSCEEEECCSST
T ss_pred             EEEEEecCcccccccCCCCeEEEEEccCCCCC--cEEEEE---ecCCceEEEEE--CCCCCeEEEEccCCeEEEeecccc
Confidence            67777          78999999999876111  121122   23344555665  44566899999999999999976 


Q ss_pred             ---cceeeeecccCCCCCCCCCCCeeeeecccccccccCCC-CceEEEEecCCcEEEEEccccccccccccceEEE-EEc
Q 020454           85 ---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR-SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNV  159 (326)
Q Consensus        85 ---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~-~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~-~~~  159 (326)
                         .+.+..+.        .|...|.++.+.+        + ...+++++.||.|++|++.......... ..... ...
T Consensus       100 ~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~  162 (416)
T 2pm9_A          100 NNAINSMARFS--------NHSSSVKTVKFNA--------KQDNVLASGGNNGEIFIWDMNKCTESPSNY-TPLTPGQSM  162 (416)
T ss_dssp             TSCCCEEEECC--------CSSSCCCEEEECS--------SSTTBEEEECSSSCEEBCBTTTTSSCTTTC-CCBCCCCSC
T ss_pred             cccccchhhcc--------CCccceEEEEEcC--------CCCCEEEEEcCCCeEEEEECCCCccccccc-ccccccccc
Confidence               22333332        5667899888755        3 5789999999999999987654100000 00000 012


Q ss_pred             cCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-
Q 020454          160 CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-  237 (326)
Q Consensus       160 ~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-  237 (326)
                      .+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+...   ..+...|++++|+|. +..++++++.|+ 
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~~l~~~~~d~~  238 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---SGIKQQLSVVEWHPK-NSTRVATATGSDN  238 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---SCCCCCEEEEEECSS-CTTEEEEEECCSS
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---cccCCceEEEEECCC-CCCEEEEEECCCC
Confidence            34678999999999 799999999999999999999888777654311   112356999999985 335899999999 


Q ss_pred             --eEEEEeCCCCCCceeEEe-ecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          238 --QVRLYDTSAQRRPVMSFD-FRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       238 --~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                        .|++||++....++..+. .|...|++++|+| ++++|++++.||.|++||+++++++..+.+| ...|.+++|+|++
T Consensus       239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~  317 (416)
T 2pm9_A          239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEA  317 (416)
T ss_dssp             SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTC
T ss_pred             CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCC
Confidence              999999998656777887 8999999999999 8999999999999999999999999999998 9999999999998


Q ss_pred             -CEEEEeccCccC
Q 020454          314 -PIIASCGFLEAA  325 (326)
Q Consensus       314 -~~l~s~s~D~~~  325 (326)
                       .+|++++.||.+
T Consensus       318 ~~~l~s~~~d~~i  330 (416)
T 2pm9_A          318 PDLFACASFDNKI  330 (416)
T ss_dssp             TTEEEECCSSSEE
T ss_pred             CCEEEEEecCCcE
Confidence             899999999875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=241.13  Aligned_cols=240  Identities=9%  Similarity=0.063  Sum_probs=182.7

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      |.-++++|+.||.|+|||+.++ ......  .+....+...+.+++|.  +++++|++|+.||+|++||+.+++.+..+.
T Consensus        92 ~d~~l~~~s~dg~v~lWd~~~~-~~~~~~--~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~  166 (344)
T 4gqb_B           92 GERGILVASDSGAVELWELDEN-ETLIVS--KFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYR  166 (344)
T ss_dssp             TTTEEEEEETTSEEEEEEECTT-SSCEEE--EEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCeEEEEECCCEEEEEeccCC-CceeEe--eccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            3467999999999999999876 222111  22222344556666654  456799999999999999999998877765


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEc
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVD  171 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~  171 (326)
                              .|.+.|.++.+.+.       ....+++++.|+.|++||+....        .+..+. ..+...+.+++|+
T Consensus       167 --------~h~~~V~~~~~~~~-------~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~  223 (344)
T 4gqb_B          167 --------AHAAQVTCVAASPH-------KDSVFLSCSEDNRILLWDTRCPK--------PASQIGCSAPGYLPTSLAWH  223 (344)
T ss_dssp             --------CCSSCEEEEEECSS-------CTTEEEEEETTSCEEEEETTSSS--------CEEECC----CCCEEEEEEC
T ss_pred             --------CcCCceEEEEecCC-------CCCceeeeccccccccccccccc--------eeeeeecceeeccceeeeec
Confidence                    56688998887551       22468899999999999987544        222221 1234568999999


Q ss_pred             CC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454          172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       172 ~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      |+ +++|++|+.|+.|++||+++++++..+..|.         ..|++++|+|. ..++|++++.|++|++||++++ + 
T Consensus       224 p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~fsp~-g~~~lasgs~D~~i~vwd~~~~-~-  291 (344)
T 4gqb_B          224 PQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS---------QCVTGLVFSPH-SVPFLASLSEDCSLAVLDSSLS-E-  291 (344)
T ss_dssp             SSCTTEEEEEETTSEEEEEESCC--CCEEEECCS---------SCEEEEEECSS-SSCCEEEEETTSCEEEECTTCC-E-
T ss_pred             CCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC---------CCEEEEEEccC-CCeEEEEEeCCCeEEEEECCCC-c-
Confidence            96 5789999999999999999999888887765         56899999984 2358999999999999999876 3 


Q ss_pred             eeEEeecCCceEEEEecCCCCe-EEEEcCCCcEEEEECCCCeE
Q 020454          251 VMSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       251 ~~~~~~~~~~i~~v~~s~~~~~-l~~g~~dg~v~iwd~~~~~~  292 (326)
                      +..+..|...|++++|+|+++. |++|+.||+|++|++.+...
T Consensus       292 ~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          292 LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            5677889999999999999865 56899999999999987543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.6e-34  Score=259.35  Aligned_cols=260  Identities=10%  Similarity=0.059  Sum_probs=201.8

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--eeecc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISN   93 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--~~~~~   93 (326)
                      +|+++. ++.|++|++..+     +....+..+..  .+.++.+.  +++++|++|+.||+|+|||+.+++..  ..+. 
T Consensus        32 ~l~~~~-~~~v~l~~~~~~-----~~~~~~~~h~~--~v~~~~~s--pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-  100 (611)
T 1nr0_A           32 KIQYCN-GTSVYTVPVGSL-----TDTEIYTEHSH--QTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-  100 (611)
T ss_dssp             EEEEEE-TTEEEEEETTCS-----SCCEEECCCSS--CEEEEEEC--TTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-
T ss_pred             EEEeCC-CCEEEEecCCCc-----ccCeEecCCCC--ceEEEEEC--CCCcEEEEEeCCCCEEEeECCCCcceeeEeec-
Confidence            455555 579999999865     34444544433  34455553  45679999999999999999654432  2222 


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC----CcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  169 (326)
                             .+.++|.++++.+        ++..+++++.+    +.|++|+.....       ..   + ..+...|.+++
T Consensus       101 -------~~~~~v~~v~fs~--------dg~~l~~~~~~~~~~~~v~~wd~~~~~-------~~---l-~gh~~~v~~v~  154 (611)
T 1nr0_A          101 -------VFSGPVKDISWDS--------ESKRIAAVGEGRERFGHVFLFDTGTSN-------GN---L-TGQARAMNSVD  154 (611)
T ss_dssp             -------CSSSCEEEEEECT--------TSCEEEEEECCSSCSEEEEETTTCCBC-------BC---C-CCCSSCEEEEE
T ss_pred             -------ccCCceEEEEECC--------CCCEEEEEECCCCceeEEEEeeCCCCc-------ce---e-cCCCCCceEEE
Confidence                   4557899999765        56678777765    367777632211       11   1 23567899999


Q ss_pred             EcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454          170 VDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (326)
Q Consensus       170 ~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~  248 (326)
                      |+|++. .|++|+.|++|++||..+.+....+..|.         .+|.+++|+|  ++++|++++.|++|++||+.++ 
T Consensus       155 f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~---------~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g-  222 (611)
T 1nr0_A          155 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT---------KFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDG-  222 (611)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc---------CceEEEEECC--CCCEEEEEECCCcEEEEECCCC-
Confidence            999986 69999999999999999888877777654         6799999998  5679999999999999999877 


Q ss_pred             CceeEEe-------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE--------------------------
Q 020454          249 RPVMSFD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--------------------------  295 (326)
Q Consensus       249 ~~~~~~~-------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~--------------------------  295 (326)
                      +.+..+.       .|...|.+++|+|++++|++++.|++|++||+++++++..                          
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence            5566663       6889999999999999999999999999999998766543                          


Q ss_pred             -----------------EcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          296 -----------------FIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       296 -----------------~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                                       +.+| ...|++++|+|++++|++++.|+.+
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v  348 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHI  348 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcE
Confidence                             3466 8899999999999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.1e-34  Score=262.76  Aligned_cols=269  Identities=10%  Similarity=0.067  Sum_probs=207.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.||.|++|++.............+.  .+...+.++++.  +++++|++|+.||+|+|||+.+++....+.  
T Consensus       396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s--~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--  469 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLS--SDGQFALSGSWDGELRLWDLAAGVSTRRFV--  469 (694)
T ss_dssp             SEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred             CEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCcceeEEe--
Confidence            46899999999999999865211111222333  233444555553  456799999999999999999888766665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE--ccCCCceEEEEEcC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDI  172 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~  172 (326)
                            .|...|.++.+.+        ++..+++++.|+.|++|+.....        ...+..  ..+...|.+++|+|
T Consensus       470 ------~h~~~v~~~~~s~--------~~~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~  527 (694)
T 3dm0_A          470 ------GHTKDVLSVAFSL--------DNRQIVSASRDRTIKLWNTLGEC--------KYTISEGGEGHRDWVSCVRFSP  527 (694)
T ss_dssp             ------CCSSCEEEEEECT--------TSSCEEEEETTSCEEEECTTSCE--------EEEECSSTTSCSSCEEEEEECS
T ss_pred             ------CCCCCEEEEEEeC--------CCCEEEEEeCCCEEEEEECCCCc--------ceeeccCCCCCCCcEEEEEEeC
Confidence                  5668899998765        56789999999999999964321        111111  12456799999999


Q ss_pred             CC--CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454          173 SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       173 ~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      ++  .+|++|+.|+.|++||+++++....+..|.         ..|++++|+|  ++++|++++.||.|++||++++ +.
T Consensus       528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~sp--dg~~l~sg~~Dg~i~iwd~~~~-~~  595 (694)
T 3dm0_A          528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---------GYVSTVAVSP--DGSLCASGGKDGVVLLWDLAEG-KK  595 (694)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSBCEEEETTTT-EE
T ss_pred             CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCC-ce
Confidence            86  689999999999999999988887777654         5689999998  5679999999999999999987 45


Q ss_pred             eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec------------------ceEEEEEECCC
Q 020454          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS------------------GSIRSIARHPT  312 (326)
Q Consensus       251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~------------------~~v~~l~~~p~  312 (326)
                      +..+.. ...|.+++|+|++.++++++ ++.|++||+++++.+..+..+..                  ..+++++|+|+
T Consensus       596 ~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd  673 (694)
T 3dm0_A          596 LYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD  673 (694)
T ss_dssp             EECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred             EEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence            555544 46899999999998887765 55699999999998877754311                  13789999999


Q ss_pred             CCEEEEeccCccC
Q 020454          313 LPIIASCGFLEAA  325 (326)
Q Consensus       313 ~~~l~s~s~D~~~  325 (326)
                      +++|++||.||.+
T Consensus       674 g~~l~sgs~Dg~i  686 (694)
T 3dm0_A          674 GSTLFSGYTDGVI  686 (694)
T ss_dssp             SSEEEEEETTSEE
T ss_pred             CCEEEEEcCCCeE
Confidence            9999999999976

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-33  Score=254.05  Aligned_cols=268  Identities=17%  Similarity=0.236  Sum_probs=215.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..+++++.+|.|++|+....      ....+..+  ...+.++.+  .+++++|++++.|+.|++|+. +++....+.  
T Consensus       234 ~~l~~~~~d~~i~~w~~~~~------~~~~~~~~--~~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~--  300 (577)
T 2ymu_A          234 QTIASASDDKTVKLWNRNGQ------LLQTLTGH--SSSVNGVAF--RPDGQTIASASDDKTVKLWNR-NGQLLQTLT--  300 (577)
T ss_dssp             SCEEEEETTSCEEEECTTSC------EEEEECCC--SSCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSCEEEEEC--
T ss_pred             CEEEEEeCCCEEEEEeCCCC------EEEEEecC--CCCEEEEEE--cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEe--
Confidence            46889999999999997643      33333333  334445555  345668999999999999997 455545443  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----------------------ccccccc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------SAESSCS  152 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----------------------~~~~~~~  152 (326)
                            .+...|.++.+.+        +...+++++.||.+++|++.....                      +++..++
T Consensus       301 ------~h~~~v~~~~~~~--------~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  366 (577)
T 2ymu_A          301 ------GHSSSVWGVAFSP--------DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK  366 (577)
T ss_dssp             ------CCSSCEEEEEECT--------TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ------cCCCCeEEEEECC--------CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence                  5567898888755        567899999999999999764321                      3345677


Q ss_pred             eEEEEEcc---------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       153 ~~~~~~~~---------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      .+++|+..         +...|.+++|+|++++|++++.|+.|++||. +++.+..+..|.         ..|++++|+|
T Consensus       367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~s~  436 (577)
T 2ymu_A          367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVWGVAFSP  436 (577)
T ss_dssp             EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS---------SCEEEEEECT
T ss_pred             EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC---------CCeEEEEECC
Confidence            88888853         2456899999999999999999999999995 455555555543         5688999998


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  303 (326)
                        ++++|++++.|+.|++||.. . +.+..+..|...|++++|+|++++|++++.|+.|++||. +++++..+.+| ...
T Consensus       437 --d~~~l~~~~~d~~v~~w~~~-~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~  510 (577)
T 2ymu_A          437 --DDQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS  510 (577)
T ss_dssp             --TSSEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred             --CCCEEEEEcCCCEEEEEECC-C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCC
Confidence              56699999999999999975 3 467888899999999999999999999999999999995 68889999998 999


Q ss_pred             EEEEEECCCCCEEEEeccCccC
Q 020454          304 IRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |++++|+|++++|++++.||.+
T Consensus       511 v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          511 VRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEE
T ss_pred             EEEEEEcCCCCEEEEEECcCEE
Confidence            9999999999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.7e-33  Score=233.25  Aligned_cols=268  Identities=10%  Similarity=0.085  Sum_probs=204.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.||.|+|||+.............+.  .+...+.++.|.  +++++|++|+.||.|++|+............ 
T Consensus        52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s--~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-  126 (340)
T 4aow_A           52 DMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVG-  126 (340)
T ss_dssp             TEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEEC--CCCCEEEEEcccccceEEeecccceeeeecC-
Confidence            46889999999999999876222222222333  233445555554  5567999999999999999987766555442 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                             +...+....+.+        .+..+++++.|+.+++|++....        ........+...+..+++++++
T Consensus       127 -------~~~~~~~~~~~~--------~~~~l~s~s~d~~~~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          127 -------HTKDVLSVAFSS--------DNRQIVSGSRDKTIKLWNTLGVC--------KYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             -------CSSCEEEEEECT--------TSSCEEEEETTSCEEEECTTSCE--------EEEECSSSCSSCEEEEEECSCS
T ss_pred             -------CCCceeEEEEee--------cCccceeecCCCeEEEEEeCCCc--------eEEEEeccccCcccceEEccCC
Confidence                   224455454433        56789999999999999976432        2222223446788999998765


Q ss_pred             --CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          175 --KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       175 --~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                        .++++++.|+.|++||+++++.+..+..|.         ..|++++|+|  ++++|++++.|+.|++||+++. +++.
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~---------~~v~~~~~s~--~~~~l~s~s~Dg~i~iwd~~~~-~~~~  251 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT---------GYLNTVTVSP--DGSLCASGGKDGQAMLWDLNEG-KHLY  251 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTCEEEEEETTTT-EEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCC---------CcEEEEEECC--CCCEEEEEeCCCeEEEEEeccC-ceee
Confidence              678999999999999999999888877654         5689999998  5669999999999999999976 5566


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc---------ceecceEEEEEECCCCCEEEEeccCc
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~---------~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .+..+ ..+.+++|+|++. +++++.|+.|++||++++..+..+.         +| ...|++++|+|++++|++||.||
T Consensus       252 ~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          252 TLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             EEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTS
T ss_pred             eecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCC
Confidence            66554 6899999999875 5566679999999999887776654         45 88999999999999999999999


Q ss_pred             cC
Q 020454          324 AA  325 (326)
Q Consensus       324 ~~  325 (326)
                      .+
T Consensus       329 ~v  330 (340)
T 4aow_A          329 LV  330 (340)
T ss_dssp             CE
T ss_pred             EE
Confidence            76

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.8e-33  Score=231.80  Aligned_cols=267  Identities=12%  Similarity=0.089  Sum_probs=208.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++ +|.|++|++..+ .... ....+....+...+..+.+.  +++++|++++.||.|++||+.+++....... 
T Consensus        64 ~~l~~~~-dg~i~iw~~~~~-~~~~-~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-  137 (337)
T 1gxr_A           64 RHVYTGG-KGCVKVWDISHP-GNKS-PVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-  137 (337)
T ss_dssp             SEEEEEC-BSEEEEEETTST-TCCS-CSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEE-
T ss_pred             cEEEEcC-CCeEEEEECCCC-Ccee-eeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeec-
Confidence            3456666 999999999876 1111 22222222344555566654  4566899999999999999987763222221 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           ..+...+.++.+.+        ++..+++++.+|.|++|+++...        .+..+. .+...+.+++++|++
T Consensus       138 -----~~~~~~i~~~~~~~--------~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          138 -----TSSAPACYALAISP--------DSKVCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDISNDG  195 (337)
T ss_dssp             -----ECSSSCEEEEEECT--------TSSEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred             -----ccCCCceEEEEECC--------CCCEEEEEeCCCcEEEEeCCCCc--------eeeeee-cccCceEEEEECCCC
Confidence                 14456788888755        56789999999999999987543        334443 256789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      ++|++++.|+.|++||+++++.+....          +...+.+++|+|  +++++++++.++.|++||++.. . ...+
T Consensus       196 ~~l~~~~~dg~i~~~d~~~~~~~~~~~----------~~~~v~~~~~s~--~~~~l~~~~~~~~i~~~~~~~~-~-~~~~  261 (337)
T 1gxr_A          196 TKLWTGGLDNTVRSWDLREGRQLQQHD----------FTSQIFSLGYCP--TGEWLAVGMESSNVEVLHVNKP-D-KYQL  261 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSS-C-EEEE
T ss_pred             CEEEEEecCCcEEEEECCCCceEeeec----------CCCceEEEEECC--CCCEEEEEcCCCcEEEEECCCC-C-eEEE
Confidence            999999999999999999988776643          224588999998  5669999999999999999976 3 4567


Q ss_pred             eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..|...|.+++|+|++++|++++.||.|++||+++++.+.... | ...|.+++|+|++++|++++.||.+
T Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~dg~i  330 (337)
T 1gxr_A          262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-C-CCcEEEEEECCCCCEEEEecCCCeE
Confidence            7888999999999999999999999999999999998885544 5 8899999999999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-33  Score=236.04  Aligned_cols=240  Identities=14%  Similarity=0.123  Sum_probs=196.3

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+.++.|.  +++++|++|+.||+|++||..+++.+..+.        .+...|.++.+.+        ++..++++
T Consensus        54 H~~~v~~~~~s--~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--------~~~~~v~~~~~s~--------~~~~l~s~  115 (340)
T 1got_B           54 HLAKIYAMHWG--TDSRLLLSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAP--------SGNYVACG  115 (340)
T ss_dssp             CSSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEE--------CSSSCEEEEEECT--------TSSEEEEE
T ss_pred             CCCceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCcceEee--------cCCccEEEEEECC--------CCCEEEEE
Confidence            44455566654  556799999999999999998888766655        4456788888765        66799999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      +.|+.+++|++......    ....+.+. .+...|.++.|++++. +++++.|+.|++||+++++.+..+..|.     
T Consensus       116 ~~d~~v~iw~~~~~~~~----~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~-----  184 (340)
T 1got_B          116 GLDNICSIYNLKTREGN----VRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT-----  184 (340)
T ss_dssp             ETTCEEEEEETTTCSBS----CEEEEEEE-CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCS-----
T ss_pred             eCCCeEEEEECccCCCc----ceeEEEec-CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCC-----
Confidence            99999999998653210    11222222 4567899999998765 7889999999999999999888877654     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                          ..|.+++|+|  +++++++++.|+.|++||++++ .++..+..|...|++++|+|++++|++|+.||.|++||+++
T Consensus       185 ----~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          185 ----GDVMSLSLAP--DTRLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ----CceEEEEECC--CCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence                5688999998  5669999999999999999987 67888999999999999999999999999999999999999


Q ss_pred             CeEEEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454          290 GKLLGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       290 ~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++.+..+..+ +...|.+++|+|++++|++|+.||.+
T Consensus       258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i  294 (340)
T 1got_B          258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC  294 (340)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence            9888777522 13579999999999999999999865

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-33  Score=234.79  Aligned_cols=271  Identities=13%  Similarity=0.117  Sum_probs=217.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.+|.|++|++..+     +....+..+  ...+.++.|.  +.+++|++++.||.|++||+.+++.+..+.. 
T Consensus        45 ~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h--~~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-  114 (369)
T 3zwl_B           45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGH--TGTIWSIDVD--CFTKYCVTGSADYSIKLWDVSNGQCVATWKS-  114 (369)
T ss_dssp             CEEEEEESSSCEEEEETTTC-----CEEEEECCC--SSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEeCCCc-----hhhhhhhhc--CCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEeec-
Confidence            56899999999999999877     454455433  3445555554  4566999999999999999998887766652 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-----CcEEEEEcccccccccc---ccceEEEEE-ccCCCce
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVSAES---SCSTVKSWN-VCASGTI  165 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-----g~v~i~~~~~~~~~~~~---~~~~~~~~~-~~~~~~v  165 (326)
                              ...+.++.+.+        ++..+++++.+     |.+.+|++.........   ....+.... ......+
T Consensus       115 --------~~~v~~~~~~~--------~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          115 --------PVPVKRVEFSP--------CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             --------SSCEEEEEECT--------TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             --------CCCeEEEEEcc--------CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence                    25788888765        66789999988     99999998865421110   111122222 1222389


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC
Q 020454          166 AFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~  244 (326)
                      .+++|+|++++|++++.|+.|++||+++ .+.+..+..+.         ..|.+++|+|  ++++|++++.|+.|++||+
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE---------KSISDMQFSP--DLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS---------SCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC---------CceeEEEECC--CCCEEEEecCCceEEEEEC
Confidence            9999999999999999999999999998 67776666543         5688999998  5669999999999999999


Q ss_pred             CCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC--------------cEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454          245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------------DLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~  310 (326)
                      ++. +.+..+. +...+..++|+|+++++++++.++              .+++||+.+++.+..+.+| ...|++++|+
T Consensus       248 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s  324 (369)
T 3zwl_B          248 STL-QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAIS  324 (369)
T ss_dssp             TTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred             CCC-ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEEC
Confidence            987 5566665 668899999999999999999988              8999999999999999998 9999999999


Q ss_pred             CCCCEEEEeccCccC
Q 020454          311 PTLPIIASCGFLEAA  325 (326)
Q Consensus       311 p~~~~l~s~s~D~~~  325 (326)
                      |++++|++++.||.+
T Consensus       325 ~~~~~l~s~~~dg~v  339 (369)
T 3zwl_B          325 PQGTSYASGGEDGFI  339 (369)
T ss_dssp             TTSSEEEEEETTSEE
T ss_pred             CCCCEEEEEcCCCeE
Confidence            999999999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.5e-34  Score=245.98  Aligned_cols=272  Identities=12%  Similarity=0.100  Sum_probs=208.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -++++++.+|.|++|++.++     +....+.  .. . +..+. .....+++|++|+.||.|++||+.+++....+.  
T Consensus        69 ~~l~~~~~d~~v~i~d~~~~-----~~~~~~~--~~-~-~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--  136 (420)
T 3vl1_A           69 SHLYKARLDGHDFLFNTIIR-----DGSKMLK--RA-D-YTAVD-TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ--  136 (420)
T ss_dssp             TTEEEEEETTEEEEEECCSE-----ETTTTSC--SC-C-EEEEE-EECSSSCEEEEEETTSCEEEECTTSCEEEEETT--
T ss_pred             CeEEEEEcCCcEEEEEeccc-----ceeeEEe--cC-C-ceEEE-EEecCCCEEEEEECCCCEEEEeCCCcceeeecc--
Confidence            45899999999999999876     2211111  11 1 22221 234556689999999999999998777655443  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .|.+.|.++.+.+        ++..+++++.||.|++|++....        .+..+. .+...|.+++|+|++
T Consensus       137 ------~h~~~v~~~~~~~--------~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          137 ------AHVSEITKLKFFP--------SGEALISSSQDMQLKIWSVKDGS--------NPRTLI-GHRATVTDIAIIDRG  193 (420)
T ss_dssp             ------SSSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTCC--------CCEEEE-CCSSCEEEEEEETTT
T ss_pred             ------cccCccEEEEECC--------CCCEEEEEeCCCeEEEEeCCCCc--------CceEEc-CCCCcEEEEEEcCCC
Confidence                  5668899999866        56789999999999999987543        333443 357789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC---------------cCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG---------------IFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v  239 (326)
                      ++|++++.|+.|++||+++++.+..+..+......               ..+...+.+++|+|  ++++|++++.||.|
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i  271 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT--YGKYVIAGHVSGVI  271 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC--TTEEEEEEETTSCE
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC--CCCEEEEEcCCCeE
Confidence            99999999999999999999888777654321100               01123455666666  56799999999999


Q ss_pred             EEEeCCCCCCceeEEe-ecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCCeE-EEEEcceecceEEEEEECCCCCEE
Q 020454          240 RLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                      ++||+++. +.+..+. .|...|++++|+|++. +|++|+.||.|++||+++++. +..+.+|+...|.++.+ |++++|
T Consensus       272 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l  349 (420)
T 3vl1_A          272 TVHNVFSK-EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALF  349 (420)
T ss_dssp             EEEETTTC-CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEE
T ss_pred             EEEECCCC-ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEE
Confidence            99999987 4444543 4778999999999998 999999999999999998754 67777754888999966 567899


Q ss_pred             EEeccCccC
Q 020454          317 ASCGFLEAA  325 (326)
Q Consensus       317 ~s~s~D~~~  325 (326)
                      ++++.||.+
T Consensus       350 ~s~~~d~~v  358 (420)
T 3vl1_A          350 VSSGFDTSI  358 (420)
T ss_dssp             EEETTTEEE
T ss_pred             EEecCCccE
Confidence            999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.3e-33  Score=235.67  Aligned_cols=245  Identities=11%  Similarity=0.099  Sum_probs=200.0

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+.++.|.  +++++|++|+.||+|++||..+++....+.        .+...+.++.+.+        ++..++++
T Consensus        63 H~~~V~~~~~s--~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--------~~~~~v~~~~~sp--------~g~~lasg  124 (354)
T 2pbi_B           63 HGNKVLCMDWC--KDKRRIVSSSQDGKVIVWDSFTTNKEHAVT--------MPCTWVMACAYAP--------SGCAIACG  124 (354)
T ss_dssp             CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CSSSCCCEEEECT--------TSSEEEEE
T ss_pred             CCCeEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCCcceEEe--------cCCCCEEEEEECC--------CCCEEEEe
Confidence            44455566654  456799999999999999998887766555        3335788788765        67799999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      +.|+.+++|++........  ......+. .+...|.++.|+|+++.|++++.|++|++||+++++.+..+..|.     
T Consensus       125 ~~d~~i~v~~~~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-----  196 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNENM--AAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG-----  196 (354)
T ss_dssp             STTSEEEEEECCCCTTCCS--GGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-----
T ss_pred             eCCCCEEEEEEeccccccc--cccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-----
Confidence            9999999999865321100  11222222 356789999999999999999999999999999999888877654     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                          ..|.++.|+|..++++|++++.||+|++||++++ +++..+..|...|++++|+|++++|++|+.|+.|++||+++
T Consensus       197 ----~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          197 ----ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             ----SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ----CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence                4588999998766779999999999999999987 67888999999999999999999999999999999999999


Q ss_pred             CeEEEEEcce-ecceEEEEEECCCCCEEEEeccCccC
Q 020454          290 GKLLGCFIGK-CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       290 ~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++.+..+..+ +...+.+++|+|++++|++++.|+.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i  308 (354)
T 2pbi_B          272 DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI  308 (354)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcE
Confidence            9888777632 13578999999999999999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=233.09  Aligned_cols=268  Identities=13%  Similarity=0.132  Sum_probs=206.0

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      .+++.+.|+.|+|||+.++     +....+..+.+...+.++.+.  +.+++|++|+.||+|++|++++++.+..+.   
T Consensus        37 ~~lAvg~D~tV~iWd~~tg-----~~~~~~~~~~~~~~V~~v~~~--~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~---  106 (318)
T 4ggc_A           37 NVLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT---  106 (318)
T ss_dssp             SEEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE---
T ss_pred             CEEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCeEEEEEEC--CCCCEEEEEECCCcEEEeecCCceeEEEec---
Confidence            3566667999999999987     555455444555566666664  456699999999999999999998877765   


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  175 (326)
                           .|...+..+..          ....+++++.++.+.+|+......       .+.... .+...+..+.++++++
T Consensus       107 -----~h~~~~~~~~~----------~~~~l~s~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~  163 (318)
T 4ggc_A          107 -----SHSARVGSLSW----------NSYILSSGSRSGHIHHHDVRVAEH-------HVATLS-GHSQEVCGLRWAPDGR  163 (318)
T ss_dssp             -----CCSSCEEEEEE----------ETTEEEEEETTSEEEEEETTSSSC-------EEEEEE-CCSSCEEEEEECTTSS
T ss_pred             -----CccceEEEeec----------CCCEEEEEecCCceEeeecCCCce-------eEEEEc-CccCceEEEEEcCCCC
Confidence                 44566665554          456899999999999998664331       233332 4567899999999999


Q ss_pred             EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE--EEEeCCCeEEEEeCCCCCCceeE
Q 020454          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF--VAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       176 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l--~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +|++++.|+.|++||+++++.........     ..+...|..+.++|.. ...+  ++++.++.|++||.+.. . ...
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~i~lwd~~~~-~-~~~  235 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQTF-----TQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSG-A-CLS  235 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSEEE-----CCCCSCEEEEEECTTS-TTEEEEEECTTTCEEEEEETTTC-C-EEE
T ss_pred             EEEEEecCcceeEEECCCCcccccceeee-----cccCCceEEEEecCCC-CcEEEEEecCCCCEEEEEecccc-c-ccc
Confidence            99999999999999998765432211100     1123568888998853 3343  45678899999999876 3 334


Q ss_pred             EeecCCceEEEEecCCCCeEEEE--cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIG--NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g--~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ...+...+..++|+|++..++++  +.|+.|++||+++++++.++.+| .+.|++++|+|++++|+|||.||.+
T Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v  308 (318)
T 4ggc_A          236 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETL  308 (318)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEE
T ss_pred             cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeE
Confidence            44566889999999999988754  47999999999999999999998 9999999999999999999999976

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.8e-33  Score=242.03  Aligned_cols=262  Identities=14%  Similarity=0.202  Sum_probs=214.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.||.|++||+.++     +....+..  +...+.++.+.    +++|++|+.||+|++||+.+++.+..+.  
T Consensus       130 ~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~--h~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~--  196 (445)
T 2ovr_B          130 NRIVSGSDDNTLKVWSAVTG-----KCLRTLVG--HTGGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTLY--  196 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTC-----CEEEECCC--CSSCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred             CEEEEEECCCcEEEEECCCC-----cEEEEEcC--CCCCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEEC--
Confidence            57899999999999999877     45545543  34455556554    4489999999999999999888776665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc---------------------ccccccce
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------------SAESSCST  153 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------------------~~~~~~~~  153 (326)
                            .+...|.++.+          +++.+++++.||.|++|++.....                     +++..++.
T Consensus       197 ------~h~~~v~~~~~----------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  260 (445)
T 2ovr_B          197 ------GHTSTVRCMHL----------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  260 (445)
T ss_dssp             ------CCSSCEEEEEE----------ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ------CCCCcEEEEEe----------cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCE
Confidence                  55678888886          346899999999999999875332                     34556788


Q ss_pred             EEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          154 VKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       154 ~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      +++|+...          ...|.++.+  +++++++|+.|+.|++||+++++.+..+..+.         ..+.++.+. 
T Consensus       261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~-  328 (445)
T 2ovr_B          261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---------SLTSGMELK-  328 (445)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC---------SCEEEEEEE-
T ss_pred             EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc---------ccEEEEEEe-
Confidence            99998653          345778888  78999999999999999999999888877654         346666664 


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE----
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----  296 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~----  296 (326)
                         ++++++++.||.|++||++++ +++..+..   |...|++++|+  +++|++|+.||.|++||+++++.+..+    
T Consensus       329 ---~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  402 (445)
T 2ovr_B          329 ---DNILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE  402 (445)
T ss_dssp             ---TTEEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred             ---CCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc
Confidence               349999999999999999977 66777775   77899999995  679999999999999999999999888    


Q ss_pred             -cceecceEEEEEECCCCCEEEEeccCcc
Q 020454          297 -IGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       297 -~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                       .+| .+.|++++|+|++.+|++|+.||.
T Consensus       403 ~~~~-~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          403 SGGS-GGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             TGGG-TCEEEEEEECSSEEEEEEECSSSS
T ss_pred             cCCC-CceEEEEEecCCEEEEEEcccCCC
Confidence             355 889999999999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=253.53  Aligned_cols=278  Identities=11%  Similarity=-0.011  Sum_probs=192.7

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeC----CCCCeEEEEecCCcEEEEeccccceee--e
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDS----QNDPLLAVARKNGLTDILNPLNGDLRV--A   90 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~dg~i~i~~~~~~~~~~--~   90 (326)
                      +++++.||.|+||++.++ ............  +...+..+.|...    ..+.+||+++.||+|++||+.+++...  .
T Consensus       176 laS~s~D~tI~iWd~~~~-~~~~~~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTS-TLHCVKVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             ------CEEEEEEEEETT-TCCEEEEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             hccCCCCceEEEEEccCC-CCCceEEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence            566789999999999876 111111112221  2233556666544    235689999999999999997664321  0


Q ss_pred             ecccCC-CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE-
Q 020454           91 ISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS-  168 (326)
Q Consensus        91 ~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  168 (326)
                      +....+ .....+...|.++.+.+         ++.|++++.||.|++||++....       ....+. .+...|.++ 
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~---------~~~lasgs~DgtV~lWD~~~~~~-------~~~~~~-~H~~~V~sv~  315 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLS---------PTTVVCGFKNGFVAEFDLTDPEV-------PSFYDQ-VHDSYILSVS  315 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESS---------SSEEEEEETTSEEEEEETTBCSS-------CSEEEE-CSSSCEEEEE
T ss_pred             eeecCceEEEEcCCCCEEEEEecC---------CCeEEEEeCCCEEEEEECCCCCC-------ceEEee-cccccEEEEE
Confidence            000000 00124567899888643         35899999999999999875321       222233 356789999 


Q ss_pred             -EEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          169 -KVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       169 -~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                       .++|++ ++||+|+.|++|+|||+++++.+..+..+...       ..|.+++|+|  +++.+++++.|++|++||++.
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------~~v~~v~fsp--~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------SNLVPVVYCP--QIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------CSCCCEEEET--TTTEEEEECSSSEEEEEETTC
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------CcccceEeCC--CcCeEEEeCCCCcEEEEECcc
Confidence             568887 89999999999999999987765554443211       2367899998  456899999999999999998


Q ss_pred             CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-------------------------------------
Q 020454          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------------------------------------  289 (326)
Q Consensus       247 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-------------------------------------  289 (326)
                      . ..+..+..|...|++|+|+|++++|++|+.||+|++||+..                                     
T Consensus       387 ~-~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~  465 (524)
T 2j04_B          387 A-FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYE  465 (524)
T ss_dssp             T-TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCC
T ss_pred             c-ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCce
Confidence            7 55678889999999999999999999999999999987532                                     


Q ss_pred             -------CeEEEEEcceecceEEEEEECCCCC---EEEEeccCccC
Q 020454          290 -------GKLLGCFIGKCSGSIRSIARHPTLP---IIASCGFLEAA  325 (326)
Q Consensus       290 -------~~~~~~~~~~~~~~v~~l~~~p~~~---~l~s~s~D~~~  325 (326)
                             +..+..+.+| ...|.+++|+|+++   +||+|+.||.+
T Consensus       466 ~~~~~~~g~~~~~l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~v  510 (524)
T 2j04_B          466 VYPLTVNDVSKAKIDAH-GINITCTKWNETSAGGKCYAFSNSAGLL  510 (524)
T ss_dssp             CCC-------------C-CCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred             ecccccCCcceeeecCC-CceEEEEECCCCCCccHHHHhhccCceE
Confidence                   1122334566 88999999999965   99999999976

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.5e-33  Score=236.91  Aligned_cols=271  Identities=10%  Similarity=0.041  Sum_probs=210.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.+|.|++|++.++   ..+....+..  +...+..+.+..  ++++|++++.||.|++||+.+++....+...
T Consensus        21 ~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~--h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~   93 (372)
T 1k8k_C           21 TQIAICPNNHEVHIYEKSGN---KWVQVHELKE--HNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL   93 (372)
T ss_dssp             SEEEEECSSSEEEEEEEETT---EEEEEEEEEC--CSSCEEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred             CEEEEEeCCCEEEEEeCCCC---cEEeeeeecC--CCCcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCeeeeeEEee
Confidence            46888999999999999876   1114444443  334555566654  5668999999999999999888765554432


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...+.++.+.+        ++..+++++.+|.+++|+++....     ..........+...|.+++|+|++
T Consensus        94 ------~~~~~v~~~~~~~--------~~~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           94 ------RINRAARCVRWAP--------NEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             ------CCSSCEEEEEECT--------TSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECTTS
T ss_pred             ------cCCCceeEEEECC--------CCCEEEEEeCCCEEEEEEecCCCc-----ceeeeeeecccCCCeeEEEEcCCC
Confidence                  4557899888765        567899999999999999876431     112333334457789999999999


Q ss_pred             CEEEEecCCCeEEEEECC------------------CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454          175 KFSLFGGKGVEVNVWDLD------------------KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                      ++|++++.|+.|++||++                  .++.+..+..+         ...|++++|+|  ++++|++++.|
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~--~~~~l~~~~~d  223 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS---------CGWVHGVCFSA--NGSRVAWVSHD  223 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC---------SSCEEEEEECS--SSSEEEEEETT
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC---------CCeEEEEEECC--CCCEEEEEeCC
Confidence            999999999999999964                  34444444432         35689999998  55699999999


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC--CeE----------------------
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKL----------------------  292 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~--~~~----------------------  292 (326)
                      +.|++||+++. +++..+..|..+|.+++|+|++++|++| .|+.|++|++++  ++.                      
T Consensus       224 ~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (372)
T 1k8k_C          224 STVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER  301 (372)
T ss_dssp             TEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred             CEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence            99999999987 6788899999999999999999988888 899999999988  421                      


Q ss_pred             ----------E------EEE-cceecceEEEEEEC-CCC---CEEEEeccCccC
Q 020454          293 ----------L------GCF-IGKCSGSIRSIARH-PTL---PIIASCGFLEAA  325 (326)
Q Consensus       293 ----------~------~~~-~~~~~~~v~~l~~~-p~~---~~l~s~s~D~~~  325 (326)
                                .      ..+ .+| ..+|++++|+ +++   .+|+|||.||.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i  354 (372)
T 1k8k_C          302 FQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGM  354 (372)
T ss_dssp             HHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred             hhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCce
Confidence                      0      223 377 9999999977 566   899999999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=237.67  Aligned_cols=275  Identities=14%  Similarity=0.133  Sum_probs=203.4

Q ss_pred             eeeeecC---cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCC-CCCeEEEEecCCcEEEEeccccc-eeee
Q 020454           16 RALTFDS---LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGD-LRVA   90 (326)
Q Consensus        16 ~l~~~~~---~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~i~~~~~~~-~~~~   90 (326)
                      .+++++.   +|.|++|++.++     +...... ..+...+.++.|.... ++.+|++|+.||.|++||+.+++ .+..
T Consensus        33 l~~~~s~~~~d~~v~iw~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  106 (357)
T 3i2n_A           33 FVTMGNFARGTGVIQLYEIQHG-----DLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS  106 (357)
T ss_dssp             EEEEEC--CCCEEEEEEEECSS-----SEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             EEEecCccCCCcEEEEEeCCCC-----cccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE
Confidence            3456665   999999999976     2221111 1234455566665442 25689999999999999998777 4444


Q ss_pred             ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC---CCceEE
Q 020454           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAF  167 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~  167 (326)
                      +.        .+...|.++.+.+.-  .-++++..+++++.||.|++|++.....       .+..+....   ...+.+
T Consensus       107 ~~--------~~~~~v~~~~~~~~~--~~s~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A          107 VK--------GHKEIINAIDGIGGL--GIGEGAPEIVTGSRDGTVKVWDPRQKDD-------PVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             EC--------CCSSCEEEEEEESGG--GCC-CCCEEEEEETTSCEEEECTTSCSS-------CSEEECCCTTSCCCCEEE
T ss_pred             EE--------ecccceEEEeecccc--ccCCCccEEEEEeCCCeEEEEeCCCCCC-------cceeccccCCCCCCceEE
Confidence            44        556788888543200  0012567899999999999999875431       233333221   337888


Q ss_pred             EE----EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEEeCCCeEEEE
Q 020454          168 SK----VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       168 ~~----~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iw  242 (326)
                      +.    ++|++++|++++.|+.|++||+++++..... .         +...|.+++|+|.. ++.+|++++.||.|++|
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~---------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-N---------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-E---------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             EEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-C---------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            88    7889999999999999999999998875442 1         22568999999832 34599999999999999


Q ss_pred             eCCCCCCceeEEe-----ecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCC-------------------eEEEEEc
Q 020454          243 DTSAQRRPVMSFD-----FRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG-------------------KLLGCFI  297 (326)
Q Consensus       243 d~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~-------------------~~~~~~~  297 (326)
                      |++.. +++..+.     .|...|++++|+|+++ +|++|+.||.|++||++++                   +.+..+.
T Consensus       240 d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  318 (357)
T 3i2n_A          240 DMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT  318 (357)
T ss_dssp             EEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred             eCcCC-CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence            99865 3344443     7899999999999998 8999999999999999854                   4677788


Q ss_pred             ceecceEEEEEECCCCCEEE-EeccCccC
Q 020454          298 GKCSGSIRSIARHPTLPIIA-SCGFLEAA  325 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~~l~-s~s~D~~~  325 (326)
                      +| .++|++++|+|++++|+ +++.||.+
T Consensus       319 ~~-~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          319 LS-TQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             CC-SSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             cC-CCCeeEEEEcCCCCeEEEEecCCCcE
Confidence            88 99999999999999998 89999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.1e-33  Score=229.51  Aligned_cols=243  Identities=12%  Similarity=0.089  Sum_probs=184.1

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~  127 (326)
                      +...+.++.|.  +.+++|++|+.||+|+|||+..+  +.+..+.        .|.++|.++.+.++.      .+..|+
T Consensus         8 h~~~V~~~~~s--~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~--------gH~~~V~~v~~s~~~------~g~~l~   71 (297)
T 2pm7_B            8 HNEMIHDAVMD--YYGKRMATCSSDKTIKIFEVEGETHKLIDTLT--------GHEGPVWRVDWAHPK------FGTILA   71 (297)
T ss_dssp             CSSCEEEEEEC--TTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC--------CCSSCEEEEEECCGG------GCSEEE
T ss_pred             CcCceEEEEEC--CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc--------cccCCeEEEEecCCC------cCCEEE
Confidence            34445555554  45669999999999999999643  3333433        677899999874421      246899


Q ss_pred             EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee--eeeecCC
Q 020454          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPP  203 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~  203 (326)
                      +++.||.|++|+++....      ..+..+. .+...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|
T Consensus        72 s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h  144 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRW------SQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH  144 (297)
T ss_dssp             EEETTTEEEEEEBSSSCB------CCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred             EEcCCCEEEEEEcCCCce------EEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence            999999999999864321      1222222 35678999999997  78999999999999999987532  2223333


Q ss_pred             CCCCCCcCCCCceeeeEEeecC-----------CCcEEEEEeCCCeEEEEeCCCCCC---ceeEEeecCCceEEEEecCC
Q 020454          204 PKNSLGIFTPTWFTSAAFLSID-----------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD  269 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~-----------~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~  269 (326)
                               ...|.+++|+|..           ++++|++++.|++|++||++....   ....+..|...|.+++|+|+
T Consensus       145 ---------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          145 ---------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             ---------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             ---------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence                     3568899999852           246899999999999999986532   34567789999999999998


Q ss_pred             C---CeEEEEcCCCcEEEEECCCCe---EEEEE--cceecceEEEEEECCCCCEEEEeccCccC
Q 020454          270 S---FNIYIGNGSGDLASVDIRTGK---LLGCF--IGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       270 ~---~~l~~g~~dg~v~iwd~~~~~---~~~~~--~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +   .+|++|+.|++|++||++++.   ....+  ..| ...|.+++|+|++++||+++.||.+
T Consensus       216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v  278 (297)
T 2pm7_B          216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKV  278 (297)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCE
T ss_pred             CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcE
Confidence            4   899999999999999998743   12223  455 8899999999999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.4e-33  Score=241.57  Aligned_cols=256  Identities=13%  Similarity=0.213  Sum_probs=210.4

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecc
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      .-.+++|+.+|.|++||+.++     +....+..  +...+.++.+    .+++|++|+.||+|++||+.+++.+..+. 
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~--h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-  210 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTL-----ECKRILTG--HTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLI-  210 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSC-----CEEEEECC--CSSCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEEC-
T ss_pred             CCEEEEEeCCCeEEEEeCCCC-----eEEEEEcC--CCCcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEEc-
Confidence            357899999999999999876     44444443  3445566666    35589999999999999999988776665 


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                             .+...|.++.+          .++.+++++.||.|++|++......      ........+...|.++++  +
T Consensus       211 -------~h~~~v~~l~~----------~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~~~~--~  265 (435)
T 1p22_A          211 -------HHCEAVLHLRF----------NNGMMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF--D  265 (435)
T ss_dssp             -------CCCSCEEEEEC----------CTTEEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEEEEEE--E
T ss_pred             -------CCCCcEEEEEE----------cCCEEEEeeCCCcEEEEeCCCCCCc------eeeeEecCCCCcEEEEEe--C
Confidence                   45678998886          4469999999999999998754321      111222345678999999  6


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +++|++|+.|+.|++||+++++.+..+..+.         ..|.++.|.    ++++++++.||.|++||++++ +++..
T Consensus       266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~-~~~~~  331 (435)
T 1p22_A          266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRV  331 (435)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEEE----TTEEEEEETTSCEEEEETTTC-CEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---------CcEEEEEeC----CCEEEEEeCCCeEEEEECCCC-CEEEE
Confidence            7999999999999999999999888877654         457788884    349999999999999999987 67889


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---------EEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +..|...|.+++|  ++.+|++|+.||.|++||+++++         ++..+.+| .+.|.+++|  ++.+|+++|.||.
T Consensus       332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred             EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe--CCCEEEEEeCCCE
Confidence            9999999999999  78899999999999999998765         78889998 999999999  6788999999997


Q ss_pred             C
Q 020454          325 A  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       407 i  407 (435)
T 1p22_A          407 I  407 (435)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=234.27  Aligned_cols=240  Identities=11%  Similarity=0.063  Sum_probs=187.3

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      .+..++|  ++++++|++|+.||+|+|||+.+++........     ..|...|.++.+.+        ++..|++++.|
T Consensus        18 ~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp--------~g~~l~s~s~D   82 (345)
T 3fm0_A           18 RCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-----EGHQRTVRKVAWSP--------CGNYLASASFD   82 (345)
T ss_dssp             CEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-----SSCSSCEEEEEECT--------TSSEEEEEETT
T ss_pred             cEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-----cccCCcEEEEEECC--------CCCEEEEEECC
Confidence            3444444  456679999999999999999877643322211     25678899999765        66799999999


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLG  209 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~  209 (326)
                      +.+++|+++....      ..+..+. .+...|.+++|+|++++|++|+.|+.|++||++++..   +..+..|.     
T Consensus        83 ~~v~iw~~~~~~~------~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~-----  150 (345)
T 3fm0_A           83 ATTCIWKKNQDDF------ECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT-----  150 (345)
T ss_dssp             SCEEEEEECCC-E------EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC-----
T ss_pred             CcEEEEEccCCCe------EEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC-----
Confidence            9999999764321      1223332 3567899999999999999999999999999987542   33444433     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                          ..|.+++|+|  ++++|++++.|++|++||.+... .+...+..|...|++++|+|++++|++|+.||.|++||..
T Consensus       151 ----~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          151 ----QDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             ----SCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             ----CCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence                5689999998  45699999999999999988652 2346778899999999999999999999999999999964


Q ss_pred             CC---------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          289 TG---------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       289 ~~---------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..               +++..+.+++...|.+++|+|++..|++++.|+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i  276 (345)
T 3fm0_A          225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI  276 (345)
T ss_dssp             CTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred             cCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence            21               34555666338899999999999999999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.9e-34  Score=241.88  Aligned_cols=251  Identities=16%  Similarity=0.132  Sum_probs=195.8

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+.++.|.  +++++|++|+.||+|+|||..+++....+.        .+...|.++.+.+        ++..++++
T Consensus        65 H~~~V~~~~~s--p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--------~h~~~v~~~~~s~--------~g~~las~  126 (380)
T 3iz6_a           65 HSGKVYSLDWT--PEKNWIVSASQDGRLIVWNALTSQKTHAIK--------LHCPWVMECAFAP--------NGQSVACG  126 (380)
T ss_dssp             CSSCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEE--------CCCTTCCCCEECT--------TSSEEEEC
T ss_pred             cccEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCccceEEe--------cCCCCEEEEEECC--------CCCEEEEe
Confidence            44455556554  456689999999999999998888766665        4556788888755        66799999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      +.|+.+++|++.......+. ....+.+ ..+...+.++.|+|++ ..|++|+.|++|++||+++++.+..+.....   
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~-~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~---  201 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGN-MPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP---  201 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCS-STTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS---
T ss_pred             eCCCcEEEEECCCCccccCC-ccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC---
Confidence            99999999998653211100 0011111 2345678889999874 6799999999999999999888766532211   


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                       ..+...|.++.|.|. ++++|++|+.|++|++||++....++..+..|...|++++|+|++++|++|+.||+|++||++
T Consensus       202 -~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          202 -SGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             -SSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             -CCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence             123467899999874 456999999999999999986556788899999999999999999999999999999999999


Q ss_pred             CCeEEEEEccee------cceEEEEEECCCCCEEEEeccCccC
Q 020454          289 TGKLLGCFIGKC------SGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       289 ~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++.+..+..+.      ...|++++|+|++++|++|+.||.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence            999988887541      1248999999999999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-33  Score=238.60  Aligned_cols=267  Identities=16%  Similarity=0.150  Sum_probs=185.7

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec------CCcEEEEeccccceee
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK------NGLTDILNPLNGDLRV   89 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~~~~~   89 (326)
                      .++.++.+...+.|++...     ..      ..+...+.++.|.  +++++|++|+.      ||.|++|+..++....
T Consensus        18 ~~~~~~g~~~~~~w~~p~~-----~p------~~H~~~V~~v~fS--pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~   84 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVT-----AP------ACMEVQIGAVRYR--RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE   84 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEEC--SSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred             eEEecCCCccccccCCCCC-----Cc------ccccCCEEEEEEC--CCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence            3445555566677776543     11      1244556666664  55679999998      7889999987665433


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  169 (326)
                      .+...    ...+...|.++++.+         ++.+++++.||.|++||+.......     ..+.-...+...|.+++
T Consensus        85 ~~~~~----~~~~~~~V~~~~~s~---------d~~~l~~s~dg~v~lWd~~~~~~~~-----~~~~~~~~h~~~V~~v~  146 (357)
T 4g56_B           85 SLCTA----GVQTEAGVTDVAWVS---------EKGILVASDSGAVELWEILEKESLL-----VNKFAKYEHDDIVKTLS  146 (357)
T ss_dssp             GGCSE----EEECSSCEEEEEEET---------TTEEEEEETTSCEEEC--------C-----CCCEEECCCSSCEEEEE
T ss_pred             eEecc----cCCCCCCEEEEEEcC---------CCCEEEEECCCEEEEeeccccceeE-----EEeeccCCCCCCEEEEE
Confidence            32210    014556799898754         4578899999999999987643211     11122234577899999


Q ss_pred             EcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       170 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      |+|++++|++|+.|+.|++||+++++.+..+..|.         ..|++++|+|.. ..++++++.|++|++||+++. +
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---------~~v~~v~~s~~~-~~~~~s~~~dg~v~~wd~~~~-~  215 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---------SEVNCVAACPGK-DTIFLSCGEDGRILLWDTRKP-K  215 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEECTTC-SSCEEEEETTSCEEECCTTSS-S
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEEccCC-CceeeeeccCCceEEEECCCC-c
Confidence            99999999999999999999999999988887654         568899999853 348899999999999999977 4


Q ss_pred             ceeEEe--ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC-CEEEEeccCccC
Q 020454          250 PVMSFD--FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGFLEAA  325 (326)
Q Consensus       250 ~~~~~~--~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~s~D~~~  325 (326)
                      +...+.  .+...+++++|+|+ +.+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++||.|+.+
T Consensus       216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence            444433  46678999999998 567889999999999999999999999998 9999999999987 689999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.7e-32  Score=228.16  Aligned_cols=239  Identities=13%  Similarity=0.166  Sum_probs=188.7

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee--eeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l  126 (326)
                      .+...+.++.+... ..++|++|+.||+|++|++......  ..+..+     ..|...|.++.+.+        ++..+
T Consensus        15 gH~~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~--------dg~~l   80 (319)
T 3frx_A           15 GHNGWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-----KGHSHIVQDCTLTA--------DGAYA   80 (319)
T ss_dssp             CCSSCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-----ECCSSCEEEEEECT--------TSSEE
T ss_pred             cccceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccccccceEE-----eCCcccEEEEEECC--------CCCEE
Confidence            34444555555422 2358999999999999998643221  111111     15668899888765        66789


Q ss_pred             EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                      ++++.|+.|++||+....        .++.+. .+...|.+++++|++++|++|+.|++|++||++. +.+..+..|.  
T Consensus        81 ~s~s~D~~v~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~--  148 (319)
T 3frx_A           81 LSASWDKTLRLWDVATGE--------TYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHN--  148 (319)
T ss_dssp             EEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCS--
T ss_pred             EEEeCCCEEEEEECCCCC--------eeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccC--
Confidence            999999999999987543        344444 4577899999999999999999999999999974 4444544443  


Q ss_pred             CCCcCCCCceeeeEEeecC----CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454          207 SLGIFTPTWFTSAAFLSID----DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v  282 (326)
                             .+|.++.|.|..    ++..+++++.|+.|++||++.. +....+..|...|++++|+|++++|++|+.||.|
T Consensus       149 -------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i  220 (319)
T 3frx_A          149 -------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEI  220 (319)
T ss_dssp             -------SCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             -------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence                   568899998842    3458999999999999999976 5677888999999999999999999999999999


Q ss_pred             EEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ++||+++++.+..+..  ...|.+++|+|++.+|++++.++
T Consensus       221 ~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          221 MLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             EEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETTE
T ss_pred             EEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCCC
Confidence            9999999999988884  56899999999999999887664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=224.66  Aligned_cols=259  Identities=13%  Similarity=0.096  Sum_probs=203.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.||.|++|++..+     +....+..+  ...+.++.+..  ++++|++|+.||.|++|++...........+
T Consensus        30 ~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  100 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDDQ-----WLGTVVYTG--QGFLNSVCYDS--EKELLLFGGKDTMINGVPLFATSGEDPLYTL  100 (313)
T ss_dssp             TEEEEEETTSEEEEEEESSS-----EEEEEEEEC--SSCEEEEEEET--TTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred             CEEEEEEcCCcEEEEECCCC-----EEEEEeecC--CccEEEEEECC--CCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence            46999999999999999876     443344333  34455555543  5668999999999999998754322222221


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  173 (326)
                           ..+...+.++.+          +++.+++++.||.+++|+..          ..+..+. .+...+.++.++| +
T Consensus       101 -----~~~~~~i~~~~~----------~~~~l~~~~~d~~i~~~d~~----------~~~~~~~-~~~~~v~~~~~~~~~  154 (313)
T 3odt_A          101 -----IGHQGNVCSLSF----------QDGVVISGSWDKTAKVWKEG----------SLVYNLQ-AHNASVWDAKVVSFS  154 (313)
T ss_dssp             -----CCCSSCEEEEEE----------ETTEEEEEETTSEEEEEETT----------EEEEEEE-CCSSCEEEEEEEETT
T ss_pred             -----hhcccCEEEEEe----------cCCEEEEEeCCCCEEEEcCC----------cEEEecc-cCCCceeEEEEccCC
Confidence                 256678888887          34689999999999999921          1333333 3567899999988 8


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      ++++++++.|+.|++||..  +....+...        +...+.+++|+|  ++ .+++++.|+.|++||+++. +++..
T Consensus       155 ~~~l~~~~~d~~i~i~d~~--~~~~~~~~~--------~~~~i~~~~~~~--~~-~~~~~~~dg~i~i~d~~~~-~~~~~  220 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQND--KVIKTFSGI--------HNDVVRHLAVVD--DG-HFISCSNDGLIKLVDMHTG-DVLRT  220 (313)
T ss_dssp             TTEEEEEETTSCEEEEETT--EEEEEECSS--------CSSCEEEEEEEE--TT-EEEEEETTSEEEEEETTTC-CEEEE
T ss_pred             CCEEEEEECCCCEEEEecC--ceEEEEecc--------CcccEEEEEEcC--CC-eEEEccCCCeEEEEECCch-hhhhh
Confidence            8999999999999999944  333333331        235689999998  44 4999999999999999987 67888


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..|...|++++|+|++ .|++++.||.|++||+++++++..+..| ..+|.+++|+|+++ +++++.||.+
T Consensus       221 ~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i  289 (313)
T 3odt_A          221 YEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLV  289 (313)
T ss_dssp             EECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCE
T ss_pred             hhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcE
Confidence            98999999999999999 6899999999999999999999999988 89999999999998 5678889875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-32  Score=233.94  Aligned_cols=266  Identities=13%  Similarity=0.095  Sum_probs=201.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.||.|++|++.++     +....+....+...+.++.|... .+.+|++++.||.|++||+.+ +....+...
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~  159 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQ-----NKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATTLRDFSG-SVIQVFAKT  159 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTST-----TCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEEEEETTS-CEEEEEECC
T ss_pred             CEEEEEcCCCeEEEEeCCCc-----ccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEEEEECCC-CceEEEecc
Confidence            47999999999999999876     33333333345556666666431 345899999999999999975 333444321


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           ..+...+.++.+.+        ++..+++++.||.|++|++...         .+..+. .+...|.+++|+|++
T Consensus       160 -----~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~-~h~~~v~~~~~~~~~  216 (383)
T 3ei3_B          160 -----DSWDYWYCCVDVSV--------SRQMLATGDSTGRLLLLGLDGH---------EIFKEK-LHKAKVTHAEFNPRC  216 (383)
T ss_dssp             -----CCSSCCEEEEEEET--------TTTEEEEEETTSEEEEEETTSC---------EEEEEE-CSSSCEEEEEECSSC
T ss_pred             -----CCCCCCeEEEEECC--------CCCEEEEECCCCCEEEEECCCC---------EEEEec-cCCCcEEEEEECCCC
Confidence                 13446788888765        6679999999999999997421         344444 356789999999999


Q ss_pred             C-EEEEecCCCeEEEEECCC----ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          175 K-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       175 ~-~l~sg~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      + +|++|+.|+.|++||+++    +..+... .         +...|++++|+|. ++++|++++.|+.|++||+++. .
T Consensus       217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~---------~~~~v~~~~~s~~-~~~~l~~~~~d~~i~iwd~~~~-~  284 (383)
T 3ei3_B          217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P---------HEKPVNAAYFNPT-DSTKLLTTDQRNEIRVYSSYDW-S  284 (383)
T ss_dssp             TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E---------CSSCEEEEEECTT-TSCEEEEEESSSEEEEEETTBT-T
T ss_pred             CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c---------CCCceEEEEEcCC-CCCEEEEEcCCCcEEEEECCCC-c
Confidence            8 999999999999999997    4444433 2         2357999999983 4559999999999999999977 3


Q ss_pred             ceeEEeecC-----------------CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-ecceEEEEEECC
Q 020454          250 PVMSFDFRE-----------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHP  311 (326)
Q Consensus       250 ~~~~~~~~~-----------------~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~~p  311 (326)
                      ....+..|.                 ..+..++|+|++++  +|+.||.|++||+++++++..+.+| +.+.+..++|+|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred             cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence            445554332                 34455677777776  7789999999999999999999873 167788889999


Q ss_pred             CCCEEEEeccCccC
Q 020454          312 TLPIIASCGFLEAA  325 (326)
Q Consensus       312 ~~~~l~s~s~D~~~  325 (326)
                      ++++|++++ ||.+
T Consensus       363 ~g~~l~s~s-d~~i  375 (383)
T 3ei3_B          363 TGDVLASGM-GFNI  375 (383)
T ss_dssp             TSSEEEEEE-TTEE
T ss_pred             CccEEEEec-CCcE
Confidence            999999997 8764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=242.18  Aligned_cols=275  Identities=11%  Similarity=0.056  Sum_probs=207.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc------ee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LR   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~------~~   88 (326)
                      -.|++++.+|.|++|++.....+. +....+..+..  .+.++.|..+ .+.+|++++.||.|++||+.+++      ..
T Consensus        80 ~~l~~~~~dg~v~vw~~~~~~~~~-~~~~~~~~h~~--~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  155 (416)
T 2pm9_A           80 KIIAGALDNGSLELYSTNEANNAI-NSMARFSNHSS--SVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTP  155 (416)
T ss_dssp             SCEEEEESSSCEEEECCSSTTSCC-CEEEECCCSSS--CCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred             CeEEEEccCCeEEEeecccccccc-cchhhccCCcc--ceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence            468889999999999998731121 23334443333  3444555332 25589999999999999998776      22


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCC-CceEEEEecCCcEEEEEccccccccccccceEEEEEccC-----C
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR-SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----S  162 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~-~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-----~  162 (326)
                      ..+..     ...+...+.++.+.+        + ...+++++.||.|++|+++...        .+..+....     .
T Consensus       156 ~~~~~-----~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~~~  214 (416)
T 2pm9_A          156 LTPGQ-----SMSSVDEVISLAWNQ--------SLAHVFASAGSSNFASIWDLKAKK--------EVIHLSYTSPNSGIK  214 (416)
T ss_dssp             BCCCC-----SCCSSCCCCEEEECS--------SCTTEEEEESSSSCEEEEETTTTE--------EEEEECCCCCSSCCC
T ss_pred             ccccc-----ccCCCCCeeEEEeCC--------CCCcEEEEEcCCCCEEEEECCCCC--------cceEEeccccccccC
Confidence            22211     125567888888755        3 4689999999999999987543        344444332     5


Q ss_pred             CceEEEEEcCCC-CEEEEecCCC---eEEEEECCCc-eeeeeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454          163 GTIAFSKVDISE-KFSLFGGKGV---EVNVWDLDKC-EKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       163 ~~v~~~~~~~~~-~~l~sg~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                      ..|.+++|+|++ .+|++++.|+   .|++||++++ +++..+. .|         ...|++++|+|. ++++|++++.|
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~---------~~~v~~~~~s~~-~~~~l~s~~~d  284 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH---------QKGILSLDWCHQ-DEHLLLSSGRD  284 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC---------SSCEEEEEECSS-CSSCEEEEESS
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc---------cCceeEEEeCCC-CCCeEEEEeCC
Confidence            789999999997 7999999998   9999999986 4444443 33         356899999984 45699999999


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCC-CeEEEEcCCCcEEEEECCCCeEEEEEc------------------
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI------------------  297 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-~~l~~g~~dg~v~iwd~~~~~~~~~~~------------------  297 (326)
                      +.|++||+++. +++..+..|...|++++|+|++ .+|++++.||.|++||+.+++......                  
T Consensus       285 g~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (416)
T 2pm9_A          285 NTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS  363 (416)
T ss_dssp             SEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred             CCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence            99999999987 6788999999999999999998 899999999999999998765322111                  


Q ss_pred             -----------------ceecceEEEEEECCCCCEEEEeccCccCC
Q 020454          298 -----------------GKCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       298 -----------------~~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                                       .| ..++.+++|+|++++|++++.||.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~  408 (416)
T 2pm9_A          364 REESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVS  408 (416)
T ss_dssp             ---CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred             ccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEE
Confidence                             03 66788999999999999999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.4e-32  Score=238.84  Aligned_cols=268  Identities=13%  Similarity=0.179  Sum_probs=213.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.||.|++||+.++     +....+..  +...+.++.+.+.  + +|++|+.||+|++||+.+++.+..+.  
T Consensus       133 ~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~--h~~~V~~l~~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~--  200 (464)
T 3v7d_B          133 NYVITGADDKMIRVYDSINK-----KFLLQLSG--HDGGVWALKYAHG--G-ILVSGSTDRTVRVWDIKKGCCTHVFE--  200 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTT-----EEEEEECC--CSSCEEEEEECST--T-EEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred             CEEEEEcCCCcEEEEECCCC-----cEEEEEeC--CCcCEEEEEEcCC--C-EEEEEeCCCCEEEEECCCCcEEEEEC--
Confidence            57999999999999999877     55555553  4445566666432  2 79999999999999999888766655  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc------------------------------
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------------  144 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~------------------------------  144 (326)
                            .+...|.++.+.+..      +...+++++.||.|++|++....                              
T Consensus       201 ------~h~~~v~~l~~~~~~------~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          201 ------GHNSTVRCLDIVEYK------NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ------CCSSCEEEEEEEESS------SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ------CCCCccEEEEEecCC------CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence                  556889888865311      45789999999999999987532                              


Q ss_pred             --------------cccccccceEEEEEccC----------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454          145 --------------VSAESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       145 --------------~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  200 (326)
                                    .+++..++.+++|+...          ...|.++.++|++++|++|+.|+.|++||+++++.+..+
T Consensus       269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence                          13445688899998753          346889999999999999999999999999999998888


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg  280 (326)
                      ..|.         ..|.++.|++    .+|++++.||.|++||+++. ...... .+...+..++|+|+++++++|+ ||
T Consensus       349 ~~h~---------~~v~~~~~~~----~~l~s~s~dg~v~vwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          349 QGHT---------ALVGLLRLSD----KFLVSAAADGSIRGWDANDY-SRKFSY-HHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             CCCS---------SCEEEEEECS----SEEEEEETTSEEEEEETTTC-CEEEEE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             eCCC---------CcEEEEEEcC----CEEEEEeCCCcEEEEECCCC-ceeeee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence            7654         5688888863    49999999999999999976 333333 3566788889999999999988 89


Q ss_pred             cEEEEECCCCeEEEE-EcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          281 DLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       281 ~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .|++||+++++++.. +..| .+.|.+++|+ ...++++++.||.
T Consensus       413 ~i~iwd~~~g~~~~~~~~~~-~~~v~~v~~~-~~~l~~~~~~~g~  455 (464)
T 3v7d_B          413 QFNIYNLRSGKLVHANILKD-ADQIWSVNFK-GKTLVAAVEKDGQ  455 (464)
T ss_dssp             EEEEEETTTCCEEESCTTTT-CSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             eEEEEECCCCcEEehhhccC-CCcEEEEEec-CCEEEEEEEeCCe
Confidence            999999999999886 4566 9999999997 3445666666653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=229.38  Aligned_cols=242  Identities=10%  Similarity=0.079  Sum_probs=179.9

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      ...+.++.+...    +|++|+.||+|++||+..+.  ....+..      ..|.+.|.++.+.+        ++..|++
T Consensus        14 ~~~v~~~~~s~~----~las~~~D~~i~lw~~~~~~~~~~~~~~~------~~h~~~v~~v~~sp--------~~~~las   75 (330)
T 2hes_X           14 KEKIWSFDFSQG----ILATGSTDRKIKLVSVKYDDFTLIDVLDE------TAHKKAIRSVAWRP--------HTSLLAA   75 (330)
T ss_dssp             SSCEEEEEEETT----EEEEEESSSCEEEEECSSSCCEEEEEECT------TCCCSCEEEEEECT--------TSSEEEE
T ss_pred             CCceeeeccCCC----EEEEEcCCCEEEEEEecCCCeEEEEEEec------CCccCCEEEEEECC--------CCCEEEE
Confidence            344555555432    89999999999999997653  2233321      13668899999765        5678999


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc----eeeeeecCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC----EKIWTAKPPP  204 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~~~  204 (326)
                      ++.|+.|++|++....... .....+..+. .+...|.+++|+|++++|++|+.|++|++||++..    +.+..+..|.
T Consensus        76 ~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRT-FEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             EETTSCEEEEEC--------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred             EeCCCcEEEEEcccCcCcc-ccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence            9999999999985321100 0011222332 45678999999999999999999999999999532    3444555543


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCC--CCeEEEEcCCCc
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGD  281 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~--~~~l~~g~~dg~  281 (326)
                               ..|.+++|+|  ++.+|++++.|++|++||.+... +++..+..|...|.+++|+|+  +.+|++|+.|++
T Consensus       154 ---------~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          154 ---------QDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             ---------SCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             ---------CceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence                     5699999998  45699999999999999987542 356788889999999999998  778999999999


Q ss_pred             EEEEECCCC--------eEEEEEcc-eecceEEEEEECCCCCEEEEeccCccC
Q 020454          282 LASVDIRTG--------KLLGCFIG-KCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       282 v~iwd~~~~--------~~~~~~~~-~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |++||++.+        .....+.+ | ...|.+++|++++ +|+++|.||.+
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~-~l~s~~~dg~v  273 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVH-KRQVYNVAWGFNG-LIASVGADGVL  273 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCC-SSCEEEEEECTTS-CEEEEETTSCE
T ss_pred             EEEEEecCCCccccceeEEeeeccccc-ccceEEEEEcCCC-EEEEEeCCCEE
Confidence            999999764        34555555 6 8999999999765 89999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=239.53  Aligned_cols=289  Identities=13%  Similarity=0.092  Sum_probs=202.3

Q ss_pred             eeeeeecCcccEEEEEecCCcC------CCcceeeeccCCCCC----------ceEEEEEeeeCCCCCeEEEEecCCcEE
Q 020454           15 LRALTFDSLGLIKVIEARGEHG------GVPKVVERWGDPHSS----------NCVLAASIDDSQNDPLLAVARKNGLTD   78 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~g~~dg~i~   78 (326)
                      -.|++|+.+|.|+||++..+..      +..++...+..+...          ..+.++.|....+..+|++++.||+|+
T Consensus        41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~  120 (447)
T 3dw8_B           41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK  120 (447)
T ss_dssp             SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE
T ss_pred             CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE
Confidence            5789999999999999987611      111233344433211          445566666554436899999999999


Q ss_pred             EEeccccceeeeecccCCCC--------------------------------CCCCCCCeeeeecccccccccCCCCceE
Q 020454           79 ILNPLNGDLRVAISNAGDSG--------------------------------AQPEDDGIVGLHLFKRQREESSSRSRTL  126 (326)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~i~~l~~~~~~~~~~~~~~~~l  126 (326)
                      +|++.+++............                                ...|...|.++.+.+        ++..+
T Consensus       121 iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l  192 (447)
T 3dw8_B          121 LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS--------DYETY  192 (447)
T ss_dssp             EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT--------TSSEE
T ss_pred             EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC--------CCCEE
Confidence            99997654321100000000                                125667888888755        55678


Q ss_pred             EEEecCCcEEEEEccccccccccccceEEEEE------ccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCcee---
Q 020454          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWN------VCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK---  196 (326)
Q Consensus       127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~---  196 (326)
                      +++ .||.|++|+++....       .+.++.      ..+...|.+++|+|++ ++|++|+.|+.|++||+++++.   
T Consensus       193 ~s~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          193 LSA-DDLRINLWHLEITDR-------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             EEE-CSSEEEEEETTEEEE-------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             EEe-CCCeEEEEECCCCCc-------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            887 899999999874221       233321      1346679999999998 9999999999999999998775   


Q ss_pred             -eeeecCCCCCCC---CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCc------------
Q 020454          197 -IWTAKPPPKNSL---GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP------------  260 (326)
Q Consensus       197 -~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------  260 (326)
                       +..+..+.....   ...+...|++++|+|  ++++|++++. +.|++||++...+++..+..|...            
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSH--SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECT--TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECC--CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence             455554432100   000113699999998  5679999998 999999999734677888777532            


Q ss_pred             ---eEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce--------------------------------ecceEE
Q 020454          261 ---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------------------------CSGSIR  305 (326)
Q Consensus       261 ---i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--------------------------------~~~~v~  305 (326)
                         +..++|+|++++|++|+.||.|++||+.+++.+. +.++                                ....|.
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence               3348999999999999999999999999987753 2221                                135688


Q ss_pred             EEEECCCCCEEEEeccCc
Q 020454          306 SIARHPTLPIIASCGFLE  323 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~  323 (326)
                      .++|+|++++||+++.|+
T Consensus       421 ~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             EEEECSSSSEEEEECSSC
T ss_pred             EEEECCCCCEEEEEecce
Confidence            999999999999999876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.5e-33  Score=233.74  Aligned_cols=228  Identities=9%  Similarity=-0.002  Sum_probs=166.6

Q ss_pred             EEecCCcEEEEeccccce-eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE--ecCCcEEEEEccccccc
Q 020454           70 VARKNGLTDILNPLNGDL-RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVTKVS  146 (326)
Q Consensus        70 ~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~--~~~g~v~i~~~~~~~~~  146 (326)
                      .++.|+++++|++...+. +..............+..+..+++.+        ++..++++  +.|+.|++||+....  
T Consensus        99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp--------Dg~~la~as~~~d~~i~iwd~~~~~--  168 (365)
T 4h5i_A           99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR--------EGTVAAIASSKVPAIMRIIDPSDLT--  168 (365)
T ss_dssp             HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--------TSSCEEEEESCSSCEEEEEETTTTE--
T ss_pred             EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--------CCCEEEEEECCCCCEEEEeECCCCc--
Confidence            345678899999865432 12211111111123345566677644        55566544  468999999976533  


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                            .+..  +.+...|.+++|+|++++|++++.+ .+++|+..+++.+......       .+...|.+++|+|  +
T Consensus       169 ------~~~~--~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~-------~~~~~v~~v~fsp--d  230 (365)
T 4h5i_A          169 ------EKFE--IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF-------DKNWSLSKINFIA--D  230 (365)
T ss_dssp             ------EEEE--EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC-------CTTEEEEEEEEEE--T
T ss_pred             ------EEEE--eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC-------CCCCCEEEEEEcC--C
Confidence                  2222  3456789999999999999998855 5677777766654432221       1235689999999  5


Q ss_pred             CcEEEEEeCCC----eEEEEeCCCCCC---ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE-cc
Q 020454          227 HRKFVAGTNDH----QVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IG  298 (326)
Q Consensus       227 ~~~l~~~~~dg----~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~  298 (326)
                      +.++++++.|+    .+++||+.....   ....+..|...|++++|+|+|++|++|+.|+.|+|||+++++++..+ .+
T Consensus       231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA  310 (365)
T ss_dssp             TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred             CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence            67899998887    688899875422   13456678889999999999999999999999999999999999886 67


Q ss_pred             eecceEEEEEECCCCCEEEEeccCccCC
Q 020454          299 KCSGSIRSIARHPTLPIIASCGFLEAAS  326 (326)
Q Consensus       299 ~~~~~v~~l~~~p~~~~l~s~s~D~~~~  326 (326)
                      | ..+|++|+|+|++++|||||.|++++
T Consensus       311 H-~~~V~~v~fSpdg~~laS~S~D~tvr  337 (365)
T 4h5i_A          311 H-SFAITEVTISPDSTYVASVSAANTIH  337 (365)
T ss_dssp             S-SSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             c-cCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            8 99999999999999999999999863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-33  Score=242.22  Aligned_cols=280  Identities=12%  Similarity=0.107  Sum_probs=205.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCC-cceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc---ccceeee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVA   90 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~---~~~~~~~   90 (326)
                      -.+++|+.||.|+|||+.....+. .+....+.   +...+.++.+.  +.+++|++|+.||+|++||++   +++....
T Consensus        77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  151 (437)
T 3gre_A           77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD---CSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKF  151 (437)
T ss_dssp             CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE---CSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred             CEEEEecCCceEEEeECcccccCcccceeeecc---CCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence            579999999999999997621111 11122222   34445566665  456689999999999999995   4443332


Q ss_pred             ecc-----cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCc
Q 020454           91 ISN-----AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGT  164 (326)
Q Consensus        91 ~~~-----~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~  164 (326)
                      ...     +...+ ..+...+.++.+...      +++..+++++.||.|++||+....        .+..+... +...
T Consensus       152 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~------~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~  216 (437)
T 3gre_A          152 LNCECIRKINLKN-FGKNEYAVRMRAFVN------EEKSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGA  216 (437)
T ss_dssp             EEEEEEEEEEGGG-GSSCCCEEEEEEEEC------SSCEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCC
T ss_pred             cccceeEEEEccC-cccccCceEEEEEEc------CCCCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCc
Confidence            221     00000 003345555553321      146789999999999999987643        45555542 5679


Q ss_pred             eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeCCCeEEEE
Q 020454          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       165 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~dg~v~iw  242 (326)
                      |.+++|+|++++|++|+.|+.|++||+++++.+..+..        .+...|++++|+|.  .++.+|++++.||.|++|
T Consensus       217 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            99999999999999999999999999999888776542        12246889977764  356799999999999999


Q ss_pred             eCCCCCCceeEEee--------------------------cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          243 DTSAQRRPVMSFDF--------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       243 d~~~~~~~~~~~~~--------------------------~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      |++++ +.+..+..                          |...|++++|+ ++++|++|+.||.|++||+++++.+..+
T Consensus       289 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          289 NFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             ETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             EcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence            99976 44555543                          44568888998 7789999999999999999998877766


Q ss_pred             cc-------------------------------------eecceEEEEEECCC--CCEEEEeccCccC
Q 020454          297 IG-------------------------------------KCSGSIRSIARHPT--LPIIASCGFLEAA  325 (326)
Q Consensus       297 ~~-------------------------------------~~~~~v~~l~~~p~--~~~l~s~s~D~~~  325 (326)
                      .+                                     | ...|++++|+++  +.+|++|+.||.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~i~~~~~~~~~~l~s~~~dG~I  433 (437)
T 3gre_A          367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDIINSISTCEVDETPLLVACDNSGLI  433 (437)
T ss_dssp             ECC--CCCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred             ecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccceeeEeeeccCCceEEEEEcCCceE
Confidence            65                                     5 899999999987  7899999999976

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-31  Score=221.55  Aligned_cols=237  Identities=17%  Similarity=0.184  Sum_probs=193.1

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+...+.++.+.  +.+++|++|+.||.|++|+..+++....+.        .+...|.++.+.+        ++..+++
T Consensus        21 gh~~~v~~~~~s--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~l~s   82 (312)
T 4ery_A           21 GHTKAVSSVKFS--PNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSS--------DSNLLVS   82 (312)
T ss_dssp             CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECT--------TSSEEEE
T ss_pred             ccCCcEEEEEEC--CCCCEEEEeeCCCeEEEEeCCCcccchhhc--------cCCCceEEEEEcC--------CCCEEEE
Confidence            344555566654  456699999999999999998888766654        5567899898766        5679999


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      ++.||.|++|+++...        .+..+. .+...|.++.|+|++++|++|+.|+.|++||+++++.+..+..|.    
T Consensus        83 ~~~d~~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----  149 (312)
T 4ery_A           83 ASDDKTLKIWDVSSGK--------CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS----  149 (312)
T ss_dssp             EETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS----
T ss_pred             ECCCCEEEEEECCCCc--------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC----
Confidence            9999999999987543        344444 346789999999999999999999999999999998887776543    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                           ..|.+++|+|  ++++|++++.|+.|++||+++. +.+..+. .+...+..++|+|++++|++++.||.|++||+
T Consensus       150 -----~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          150 -----DPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             -----SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             -----CcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence                 5688999998  5669999999999999999977 4455543 45678999999999999999999999999999


Q ss_pred             CCCeEEEEEcceecceEEE---EEECCCCCEEEEeccCccC
Q 020454          288 RTGKLLGCFIGKCSGSIRS---IARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~---l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++++.+..+.+| ...+..   ....+++.+|++|+.||.+
T Consensus       222 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i  261 (312)
T 4ery_A          222 SKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLV  261 (312)
T ss_dssp             TTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCE
T ss_pred             CCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEE
Confidence            999999999887 554332   2334678899999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-31  Score=231.56  Aligned_cols=265  Identities=12%  Similarity=0.065  Sum_probs=204.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.+|.|++|++..+     +....+.  .+...+.++.|.  +.+++|++|+.||.|++||+.+++.+..+.  
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~--~h~~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--  178 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFN-----LQREIDQ--AHVSEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTLI--  178 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSC-----EEEEETT--SSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEEE--
T ss_pred             CEEEEEECCCCEEEEeCCCc-----ceeeecc--cccCccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEEc--
Confidence            57999999999999999876     4444443  334455556554  456699999999999999999888776665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc--------------
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------------  160 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--------------  160 (326)
                            .|...|.++.+.+        ++..+++++.||.|++||+....        .+..+...              
T Consensus       179 ------~h~~~v~~~~~~~--------~~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~  236 (420)
T 3vl1_A          179 ------GHRATVTDIAIID--------RGRNVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSIALFV  236 (420)
T ss_dssp             ------CCSSCEEEEEEET--------TTTEEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEEEEEE
T ss_pred             ------CCCCcEEEEEEcC--------CCCEEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEEEEec
Confidence                  5668899999765        56789999999999999987543        22222211              


Q ss_pred             ---------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EE
Q 020454          161 ---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF  230 (326)
Q Consensus       161 ---------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l  230 (326)
                               +...+.+++|+|++++|++|+.|+.|++||+++++.+......        +...|++++|+|.  +. +|
T Consensus       237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~--~~~~l  306 (420)
T 3vl1_A          237 GTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--------FTCSCNSLTVDGN--NANYI  306 (420)
T ss_dssp             CCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--------TSSCEEEEEECSS--CTTEE
T ss_pred             CCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--------cCCCceeEEEeCC--CCCEE
Confidence                     1245666677899999999999999999999998877665432        2356899999984  44 99


Q ss_pred             EEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC---------eEEEEEccee
Q 020454          231 VAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------KLLGCFIGKC  300 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~---------~~~~~~~~~~  300 (326)
                      ++++.||.|++||+++...++..+.. +...++++.+ +++++|++++.||.|++||+...         .....+.+| 
T Consensus       307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-  384 (420)
T 3vl1_A          307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-  384 (420)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-
T ss_pred             EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-
Confidence            99999999999999987666777776 6678888755 57889999999999999998863         122345566 


Q ss_pred             cceEEEEEECCCCC---EEEEeccCcc
Q 020454          301 SGSIRSIARHPTLP---IIASCGFLEA  324 (326)
Q Consensus       301 ~~~v~~l~~~p~~~---~l~s~s~D~~  324 (326)
                      .+.|.+++|+|+++   .|+++|.+|.
T Consensus       385 ~~~v~~~~~s~~~~~~g~l~a~g~~g~  411 (420)
T 3vl1_A          385 DDAVSQFCYVSDDESNGEVLEVGKNNF  411 (420)
T ss_dssp             SCCCCEEEEECCSSSSCEEEEEETTTE
T ss_pred             CcceEEEEEccCCCCcceEEEEcCCce
Confidence            88999999999998   5666666664

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.8e-33  Score=229.87  Aligned_cols=243  Identities=10%  Similarity=0.066  Sum_probs=182.8

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce--eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~  127 (326)
                      +...+.++.|..  .+++|++|+.|++|+|||+.+++.  +..+.        .|.++|.++.+.++.      .+..|+
T Consensus        12 H~~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~--------gH~~~V~~v~~~~~~------~~~~l~   75 (316)
T 3bg1_A           12 HEDMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIADLR--------GHEGPVWQVAWAHPM------YGNILA   75 (316)
T ss_dssp             --CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEEEEE--------CCSSCEEEEEECCGG------GSSCEE
T ss_pred             ccCeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEEEEc--------CCCccEEEEEeCCCC------CCCEEE
Confidence            444555666643  456899999999999999977653  23333        667899999875421      256899


Q ss_pred             EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee---eeeecC
Q 020454          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK---IWTAKP  202 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~  202 (326)
                      +++.|+.|++|+++....      ..+..+. .+...|.+++|+|+  +.+|++|+.|+.|++||++.+..   ......
T Consensus        76 s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~  148 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGTW------EKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA  148 (316)
T ss_dssp             EEETTSCEEEECCSSSCC------CEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred             EEECCCEEEEEECCCCcc------eEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence            999999999999764320      1222222 35678999999998  78999999999999999986532   122222


Q ss_pred             CCCCCCCcCCCCceeeeEEeecC---------------CCcEEEEEeCCCeEEEEeCCCCC--CceeEEeecCCceEEEE
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSID---------------DHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETPIKAVA  265 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~---------------~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~i~~v~  265 (326)
                               +...|.+++|+|..               .+++|++++.|++|++||++...  .++..+..|...|.+++
T Consensus       149 ---------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          149 ---------HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             ---------SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred             ---------ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence                     23457788888742               13589999999999999987542  24566778999999999


Q ss_pred             ecCCC----CeEEEEcCCCcEEEEECCCC---e-EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          266 EEPDS----FNIYIGNGSGDLASVDIRTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       266 ~s~~~----~~l~~g~~dg~v~iwd~~~~---~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |+|++    ++|++|+.||+|++||+++.   + ....+..| .+.|.+++|+|++++||+++.||.+
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v  286 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKV  286 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCE
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeE
Confidence            99986    78999999999999999862   1 22345566 8899999999999999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.2e-32  Score=236.12  Aligned_cols=271  Identities=13%  Similarity=0.090  Sum_probs=190.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..|++|+.||.|+|||+..+ .. . ....+.  .+...+.++.|.+ .++.+|++|+.||+|++||++++.. ..+...
T Consensus       133 ~~lasGs~dg~i~lWd~~~~-~~-~-~~~~~~--gH~~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~  205 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFGIK-DK-P-TFIKGI--GAGGSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNIL-RVFASS  205 (435)
T ss_dssp             TCEEEEETTSCEEEECSSCC-SC-C-EEECCC--SSSCCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEE-EEEECC
T ss_pred             CEEEEEeCCCEEEEEECCCC-Cc-e-eEEEcc--CCCCCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCce-eEEecc
Confidence            45889999999999999865 11 1 112222  3344455555542 2345899999999999999976554 333221


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           ......+.++.+.+        ++..+++++.||.|++|+++...         +..+. .+...|.+++|+|++
T Consensus       206 -----~~~~~~~~~~~~~~--------~~~~l~~g~~dg~i~~wd~~~~~---------~~~~~-~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          206 -----DTINIWFCSLDVSA--------SSRMVVTGDNVGNVILLNMDGKE---------LWNLR-MHKKKVTHVALNPCC  262 (435)
T ss_dssp             -----SSCSCCCCCEEEET--------TTTEEEEECSSSBEEEEESSSCB---------CCCSB-CCSSCEEEEEECTTC
T ss_pred             -----CCCCccEEEEEECC--------CCCEEEEEeCCCcEeeeccCcce---------eEEEe-cccceEEeeeecCCC
Confidence                 12234566666544        56789999999999999976432         11111 246789999999987


Q ss_pred             -CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          175 -KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       175 -~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                       .+|++|+.|+.|++||+++.+....+..      ...|...|++++|+|  ++++|++++.|+.|++||++++ .....
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~------~~~h~~~v~~~~~sp--dg~~l~s~~~D~~i~iwd~~~~-~~~~~  333 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKASFLY------SLPHRHPVNAACFSP--DGARLLTTDQKSEIRVYSASQW-DCPLG  333 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSSCCSB------CCBCSSCEEECCBCT--TSSEEEEEESSSCEEEEESSSS-SSEEE
T ss_pred             ceEEEEecCcceeeEEecccccccceEEE------eeeccccccceeECC--CCCeeEEEcCCCEEEEEECCCC-ccceE
Confidence             4788999999999999987654333211      112446799999998  5679999999999999999977 33444


Q ss_pred             EeecCC------ceEEEEecCCCCeEEEEc------------CCCcEEEEECCCCeEEEEEcceecceEEEE-EECCCCC
Q 020454          254 FDFRET------PIKAVAEEPDSFNIYIGN------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLP  314 (326)
Q Consensus       254 ~~~~~~------~i~~v~~s~~~~~l~~g~------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l-~~~p~~~  314 (326)
                      +..|..      .+....|+|++.+++++.            .++.|++||..+++++..+..++...|.++ +|+|+++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~  413 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD  413 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC
Confidence            443322      233446777777666654            345799999999999988764448889988 6999999


Q ss_pred             EEEEeccCccC
Q 020454          315 IIASCGFLEAA  325 (326)
Q Consensus       315 ~l~s~s~D~~~  325 (326)
                      +|++|+ |+.+
T Consensus       414 ~lasg~-d~~i  423 (435)
T 4e54_B          414 TLASAM-GYHI  423 (435)
T ss_dssp             CEEEEC-SSEE
T ss_pred             EEEEEc-CCcE
Confidence            999887 6543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-31  Score=224.26  Aligned_cols=271  Identities=14%  Similarity=0.092  Sum_probs=203.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEEecCCcEEEEec-cccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP-LNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~-~~~~~~~~~~   92 (326)
                      -.+++++.+|.|++|++..+ .....+....   .+...+.++++..  .++ +|++|+.||.|++||+ .+++. ..+.
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~-~~~~~~~~~~---~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~   96 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQ-AKNVDLLQSL---RYKHPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSF-QALT   96 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETT-TTEEEEEEEE---ECSSCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred             CEEEEEcCCCeEEEEEeCCC-Cccccceeee---ecCCceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence            46899999999999999876 1111122222   2334455666654  367 8999999999999999 87765 3332


Q ss_pred             ccCCCCCCC--CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc-cceEEEEEccCCCceEEEE
Q 020454           93 NAGDSGAQP--EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CSTVKSWNVCASGTIAFSK  169 (326)
Q Consensus        93 ~~~~~~~~~--~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~  169 (326)
                              .  +...|.++.+.+         +..+++++.|+.|++|++.......... ...+.  ...+...+.+++
T Consensus        97 --------~~~~~~~v~~l~~~~---------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~  157 (342)
T 1yfq_A           97 --------NNEANLGICRICKYG---------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--NTKVKNKIFTMD  157 (342)
T ss_dssp             --------SCCCCSCEEEEEEET---------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--SSSSCCCEEEEE
T ss_pred             --------ccCCCCceEEEEeCC---------CCEEEEEcCCCeEEEEcccccccccccccCCeee--EEeeCCceEEEE
Confidence                    3  668899888643         4689999999999999987511000000 00111  123567899999


Q ss_pred             EcCCCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEee-cCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          170 VDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       170 ~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      ++|++  +++++.|+.|++||+++ +........       ..+...+.+++|+| .  ++++++++.||.|++||++..
T Consensus       158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~i~~i~~~~~~--~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-------SGLKYQIRDVALLPKE--QEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-------CSCSSCEEEEEECSGG--GCEEEEEETTSEEEEEECCTT
T ss_pred             ecCCc--EEEEeCCCeEEEEECCccccccceeee-------cCCCCceeEEEECCCC--CCEEEEEecCCcEEEEEEcCC
Confidence            99877  88999999999999987 543221111       11234688999998 5  349999999999999999865


Q ss_pred             -----CCceeEEeecCC---------ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          248 -----RRPVMSFDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       248 -----~~~~~~~~~~~~---------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                           ..+...+..|..         .|.+++|+|++++|++|+.||.|++||+++++++..+.+||.++|.+++  |++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~  304 (342)
T 1yfq_A          227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD  304 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred             CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence                 356778887755         9999999999999999999999999999999999999886589999999  999


Q ss_pred             CEEEEeccCcc
Q 020454          314 PIIASCGFLEA  324 (326)
Q Consensus       314 ~~l~s~s~D~~  324 (326)
                      ++|+++|.||.
T Consensus       305 ~~l~s~s~Dg~  315 (342)
T 1yfq_A          305 NILCLATSDDT  315 (342)
T ss_dssp             SEEEEEEECTH
T ss_pred             CeEEEEecCCc
Confidence            99999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-31  Score=228.24  Aligned_cols=239  Identities=18%  Similarity=0.142  Sum_probs=185.0

Q ss_pred             EEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCC----------CCCCCCCeeeeecccccccccCCCC
Q 020454           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG----------AQPEDDGIVGLHLFKRQREESSSRS  123 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~l~~~~~~~~~~~~~~  123 (326)
                      +.++.|  ++++++|++|+ ++.+++|++.+++.+..+.......          ...+...|.++.+.+        ++
T Consensus        67 V~~v~f--spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--------dg  135 (393)
T 1erj_A           67 VCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--------DG  135 (393)
T ss_dssp             CCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--------TS
T ss_pred             EEEEEE--CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--------CC
Confidence            334444  44566888876 7899999999888766654311000          001223477788755        66


Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      ..+++++.|+.|++||+....        .+..+. .+...|.+++|+|++++|++++.|++|++||+++++....+.. 
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-  205 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRK--------IVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-  205 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEECCCCc--------EEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-
Confidence            789999999999999986533        333333 4567899999999999999999999999999999887665442 


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-------eecCCceEEEEecCCCCeEEEE
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-------DFRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~~i~~v~~s~~~~~l~~g  276 (326)
                               ...+.+++|+|. ++++|++++.|+.|++||++++ ..+..+       ..|...|++++|+|++++|++|
T Consensus       206 ---------~~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~  274 (393)
T 1erj_A          206 ---------EDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  274 (393)
T ss_dssp             ---------SSCEEEEEECST-TCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             ---------CCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence                     245889999985 5669999999999999999976 445554       4678899999999999999999


Q ss_pred             cCCCcEEEEECCCC------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          277 NGSGDLASVDIRTG------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       277 ~~dg~v~iwd~~~~------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.||.|++||+++.            .+...+.+| ...|.+++|+|++++|++||.||.+
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v  334 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGV  334 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCCCEEEEEeCCCeE
Confidence            99999999999763            345667788 9999999999999999999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.2e-32  Score=231.95  Aligned_cols=265  Identities=16%  Similarity=0.145  Sum_probs=199.0

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-------ee
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-------RV   89 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-------~~   89 (326)
                      +++++.+|.|+||++... ....+....+.  .+...+.++.|... .+.+|++|+.||+|++||+.++..       +.
T Consensus        50 ~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~--~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~  125 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKT-GRVDKNVPLVC--GHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI  125 (402)
T ss_dssp             EBCCSSSCCEEEEETTCC-EECCTTCCCBC--CCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSE
T ss_pred             EEEEcCCCEEEEEECccC-CCCCCCCceEe--cCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccCCceE
Confidence            445889999999998654 11111111222  34455666666431 456899999999999999987743       23


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEccccccccccccceEEEEE-ccCCCceEE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAF  167 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~  167 (326)
                      .+.        .|...|.++.+.+        ++ ..+++++.||.|++||+....        .+..+. ..+...|.+
T Consensus       126 ~~~--------~h~~~v~~~~~~p--------~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~  181 (402)
T 2aq5_A          126 TLE--------GHTKRVGIVAWHP--------TAQNVLLSAGCDNVILVWDVGTGA--------AVLTLGPDVHPDTIYS  181 (402)
T ss_dssp             EEE--------CCSSCEEEEEECS--------SBTTEEEEEETTSCEEEEETTTTE--------EEEEECTTTCCSCEEE
T ss_pred             Eec--------CCCCeEEEEEECc--------CCCCEEEEEcCCCEEEEEECCCCC--------ccEEEecCCCCCceEE
Confidence            332        5668899998765        33 589999999999999987543        344443 346778999


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCceeeeee-cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---eCCCeEEEEe
Q 020454          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYD  243 (326)
Q Consensus       168 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---~~dg~v~iwd  243 (326)
                      ++|+|++++|++++.|+.|++||+++++.+..+ ..+..        ..+..+.|+|  ++++|+++   +.|+.|++||
T Consensus       182 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          182 VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--------TRPVHAVFVS--EGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS--------SSCCEEEECS--TTEEEEEEECTTCCEEEEEEE
T ss_pred             EEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC--------CcceEEEEcC--CCcEEEEeccCCCCceEEEEc
Confidence            999999999999999999999999999888776 44432        1367889998  56688888   7999999999


Q ss_pred             CCCCCCceeEEe-ecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeE-EEEEcce-ecceEEEEEECCCCCEEEEe
Q 020454          244 TSAQRRPVMSFD-FRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL-LGCFIGK-CSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~-~~~~~~~-~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ++....++.... .+...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..| +..+|.+++|+|++.+++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence            998755454444 4667899999999999996 667899999999998874 4444433 15899999999999887653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.4e-31  Score=247.80  Aligned_cols=266  Identities=15%  Similarity=0.093  Sum_probs=217.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.+|.|+|||+.++     +....+..+.  ..+.++.|..  ++++|++|+.||.|++||+.+++.+..+.  
T Consensus        26 ~~la~~~~~g~v~iwd~~~~-----~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--   94 (814)
T 3mkq_A           26 PWVLTTLYSGRVEIWNYETQ-----VEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFE--   94 (814)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             CEEEEEeCCCEEEEEECCCC-----ceEEEEecCC--CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEe--
Confidence            56889999999999999877     4555555333  3445555544  45589999999999999999888777665  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-C
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  173 (326)
                            .+.+.|.++.+.+        ++..+++++.||.|++|++....       .....+. .+...|.+++|+| +
T Consensus        95 ------~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~-~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           95 ------AHPDYIRSIAVHP--------TKPYVLSGSDDLTVKLWNWENNW-------ALEQTFE-GHEHFVMCVAFNPKD  152 (814)
T ss_dssp             ------CCSSCEEEEEECS--------SSSEEEEEETTSEEEEEEGGGTS-------EEEEEEE-CCSSCEEEEEEETTE
T ss_pred             ------cCCCCEEEEEEeC--------CCCEEEEEcCCCEEEEEECCCCc-------eEEEEEc-CCCCcEEEEEEEcCC
Confidence                  4567899998765        56689999999999999987542       1233333 3567899999999 7


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +++|++++.|+.|++||+.+++.......+.        ...+..++|+|.+++.++++++.||.|++||+++. .++..
T Consensus       153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~  223 (814)
T 3mkq_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT  223 (814)
T ss_dssp             EEEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEE
Confidence            8999999999999999998877766655432        14478899998666779999999999999999976 56888


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC--EEEEeccCc
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGFLE  323 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~s~D~  323 (326)
                      +..|...|++++|+|++++|++|+.||.|++||+.+++.+..+..| ...|.+++|+|++.  ++++++.++
T Consensus       224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~  294 (814)
T 3mkq_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNG  294 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTE
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCC
Confidence            8889999999999999999999999999999999999999999988 89999999999987  466665544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-32  Score=248.58  Aligned_cols=279  Identities=13%  Similarity=0.147  Sum_probs=205.8

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCC--CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH--SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      .-.+++++.+|.|++||+..+     +....+..+.  ....+..+.+.   .+.++++++.||.|++||+.+++.+..+
T Consensus       264 ~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          264 SQKFATVGADATIRVWDVTTS-----KCVQKWTLDKQQLGNQQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             SSEEEEEETTSEEEEEETTTT-----EEEEEEECCTTCGGGCEEEEEEE---ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCC-----cEEEEEcCCCCcccCceeEEEeC---CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence            457899999999999999876     4444444331  22344445553   4558999999999999999877765555


Q ss_pred             cccCCCCCCCCCCCeeeeecccc----------------------cc---cccCCCCceEEEEecCCcEEEEEcccccc-
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKR----------------------QR---EESSSRSRTLLTCTTKGKASMRSIEVTKV-  145 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~----------------------~~---~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-  145 (326)
                      .        .+...|.++.+ +.                      ..   ....+.+..+++++.|+.+++|++..... 
T Consensus       336 ~--------~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  406 (615)
T 1pgu_A          336 S--------GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG  406 (615)
T ss_dssp             C--------CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred             e--------CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence            4        23344444443 20                      00   00001345677777777777777654221 


Q ss_pred             --------------ccccccceEEEEEcc---------CCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceee-eee
Q 020454          146 --------------SAESSCSTVKSWNVC---------ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKI-WTA  200 (326)
Q Consensus       146 --------------~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~-~~~  200 (326)
                                    .....++.+.+|+..         +...+.+++++  +++|++++. |+.|++||+.+++.. ..+
T Consensus       407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~  484 (615)
T 1pgu_A          407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLK  484 (615)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred             CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccccc
Confidence                          000133445555532         23467888888  889999999 999999999987654 332


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecC----------C
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEP----------D  269 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~----------~  269 (326)
                      ..         +...|++++|+|  ++++|++++.||.|++||+.+. +++..+.. |...|++++|+|          +
T Consensus       485 ~~---------~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~  552 (615)
T 1pgu_A          485 TP---------LRAKPSYISISP--SETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIE  552 (615)
T ss_dssp             SC---------CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             CC---------ccCceEEEEECC--CCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccC
Confidence            22         335799999998  5679999999999999999977 55677766 899999999999          9


Q ss_pred             CCeEEEEcCCCcEEEEECCCC-eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          270 SFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       270 ~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++|++|+.||.|++||+.++ +++..+.+| ...|++++|+|+++ |++++.||.+
T Consensus       553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~-l~s~~~d~~v  607 (615)
T 1pgu_A          553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPST-LVSSGADACI  607 (615)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTE-EEEEETTSCE
T ss_pred             CCEEEEEcCCCcEEEEECCCCceechhhhcC-ccceEEEEEcCCCC-eEEecCCceE
Confidence            999999999999999999998 788888998 99999999999999 9999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.5e-31  Score=221.30  Aligned_cols=227  Identities=14%  Similarity=0.174  Sum_probs=173.5

Q ss_pred             CCCeEEEEecCCcEEEEecccccee----eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLR----VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      ++++|++|+.|++|++||+.+++..    .....+     ..|...|.++.+.+        ++..+++++.|+.|++||
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-----~~h~~~V~~~~~~~--------~~~~l~s~s~D~~v~lwd  104 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-----TGHNHFVSDLALSQ--------ENCFAISSSWDKTLRLWD  104 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-----CCCSSCEEEEEECS--------STTEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchh-----ccCCCceEEEEECC--------CCCEEEEEcCCCcEEEEE
Confidence            5679999999999999998654311    111111     26678899888755        567899999999999999


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      +....        .++.+. .+...|.+++|+|++++|++++.|+.|++||+...... .....      ..+..+|.++
T Consensus       105 ~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~------~~~~~~v~~~  168 (343)
T 2xzm_R          105 LRTGT--------TYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSAEK------ENHSDWVSCV  168 (343)
T ss_dssp             TTSSC--------EEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECCTT------TSCSSCEEEE
T ss_pred             CCCCc--------EEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eeecc------cCCCceeeee
Confidence            87543        344444 35778999999999999999999999999999843322 22111      1234679999


Q ss_pred             EEeecCC--------CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC-C
Q 020454          220 AFLSIDD--------HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-G  290 (326)
Q Consensus       220 ~~~p~~~--------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~  290 (326)
                      +|+|...        +.+|++++.|+.|++||.. . +....+..|...|++++|+|+|++|++|+.||.|++||+.. .
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9998531        2589999999999999954 3 45677888999999999999999999999999999999954 4


Q ss_pred             eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       291 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .....+. + ...|.+++|+|++++|+++ .|+.
T Consensus       247 ~~~~~~~-~-~~~v~~v~~sp~~~~la~~-~d~~  277 (343)
T 2xzm_R          247 YPQREFD-A-GSTINQIAFNPKLQWVAVG-TDQG  277 (343)
T ss_dssp             SCSEEEE-C-SSCEEEEEECSSSCEEEEE-ESSC
T ss_pred             ccceeec-C-CCcEEEEEECCCCCEEEEE-CCCC
Confidence            4444443 3 5579999999999887755 4654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-32  Score=232.55  Aligned_cols=271  Identities=10%  Similarity=0.040  Sum_probs=189.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-eeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-~~~~~~~   93 (326)
                      -.+++++.+|.|++|++.++   ..+....+.  .+...+.++.|.  +++++|++++.||+|++||+.+++ .......
T Consensus        24 ~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~--~h~~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~   96 (377)
T 3dwl_C           24 TEFVTTTATNQVELYEQDGN---GWKHARTFS--DHDKIVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL   96 (377)
T ss_dssp             SEEECCCSSSCBCEEEEETT---EEEECCCBC--CCSSCEEEEEEC--TTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred             CEEEEecCCCEEEEEEccCC---ceEEEEEEe--cCCceEEEEEEe--CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence            46888999999999999864   111222333  344455566554  445689999999999999998776 2222221


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                            ..+...|.++.+.+        ++..+++++.|+.|++|+++....     ...++.+...+...|.+++|+|+
T Consensus        97 ------~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           97 ------LRLNRAATFVRWSP--------NEDKFAVGSGARVISVCYFEQEND-----WWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             ------CCCSSCEEEEECCT--------TSSCCEEEESSSCEEECCC----------CCCCEEECSSCCSCEEEEEECTT
T ss_pred             ------cccCCceEEEEECC--------CCCEEEEEecCCeEEEEEECCccc-----ceeeeEeecccCCCeEEEEEcCC
Confidence                  25667899998765        567899999999999999875431     11233444336789999999999


Q ss_pred             CCEEEEecCCCeEEEEECCCce------------------eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCE------------------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~  235 (326)
                      +++|++++.|+.|++||++..+                  .+..+          .+...|++++|+|  ++++|++++.
T Consensus       158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~sp--~~~~l~~~~~  225 (377)
T 3dwl_C          158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----------PSGGWVHAVGFSP--SGNALAYAGH  225 (377)
T ss_dssp             SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----------CCSSSEEEEEECT--TSSCEEEEET
T ss_pred             CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----------cCCceEEEEEECC--CCCEEEEEeC
Confidence            9999999999999999986322                  22222          2446799999998  5669999999


Q ss_pred             CCeEEEEeCCCCCCc---eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe---------------------
Q 020454          236 DHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------------------  291 (326)
Q Consensus       236 dg~v~iwd~~~~~~~---~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~---------------------  291 (326)
                      |+.|++||+++...+   +..+..|...|.+++|+|++++|++|+.++.+ +|+.....                     
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T 3dwl_C          226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGN  304 (377)
T ss_dssp             TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSS
T ss_pred             CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccc
Confidence            999999999987332   67788899999999999999999999877666 66654211                     


Q ss_pred             ---------EE------EEEc----------------ceecceEEEEEECCCC-C---EEEEeccCccC
Q 020454          292 ---------LL------GCFI----------------GKCSGSIRSIARHPTL-P---IIASCGFLEAA  325 (326)
Q Consensus       292 ---------~~------~~~~----------------~~~~~~v~~l~~~p~~-~---~l~s~s~D~~~  325 (326)
                               .+      ..+.                .| .+.|+++++.+.. .   .|+|||.||.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i  372 (377)
T 3dwl_C          305 TGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRV  372 (377)
T ss_dssp             BCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcE
Confidence                     00      1111                26 8999999977643 3   69999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-30  Score=242.70  Aligned_cols=280  Identities=11%  Similarity=0.107  Sum_probs=204.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.||.|+||+....     +......   +...+..+.|..   +++|++++.|++|++||+.+++.+..+.. 
T Consensus        30 ~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~---~~~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~-   97 (902)
T 2oaj_A           30 NLLAIATVTGEVHIYGQQQV-----EVVIKLE---DRSAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFV-   97 (902)
T ss_dssp             TEEEEEETTSEEEEECSTTC-----EEEEECS---SCCCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEeCCCc-----EEEEEcC---CCCCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcC-
Confidence            57899999999999998765     3333332   234566666654   44899999999999999998887666542 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc------------------------------
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------------  144 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~------------------------------  144 (326)
                              .+.|.++.+.+        ++..+++++.||.|++||++...                              
T Consensus        98 --------~~~V~~v~~sp--------~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           98 --------PGKITSIDTDA--------SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             --------SSCEEEEECCT--------TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             --------CCCEEEEEECC--------CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence                    25788888765        66799999999999999986432                              


Q ss_pred             -----cccccccceEEEEEccC----------------------------CCceEEEEEcCCCCEEEEecCCCeEEEEEC
Q 020454          145 -----VSAESSCSTVKSWNVCA----------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDL  191 (326)
Q Consensus       145 -----~~~~~~~~~~~~~~~~~----------------------------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~  191 (326)
                           .+++..++.+ +|++..                            ...|.+++|+|++++|++|+.|+.|++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence                 1234456778 888643                            245999999999999999999999999999


Q ss_pred             CCceeeee--ec---CC-------------C-------------C-----------C------CC---C-----------
Q 020454          192 DKCEKIWT--AK---PP-------------P-------------K-----------N------SL---G-----------  209 (326)
Q Consensus       192 ~~~~~~~~--~~---~~-------------~-------------~-----------~------~~---~-----------  209 (326)
                      ++++.+..  +.   .+             .             .           +      .+   .           
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence            87654321  00   00             0             0           0      00   0           


Q ss_pred             ------------------cC-----------------------------------------------------------C
Q 020454          210 ------------------IF-----------------------------------------------------------T  212 (326)
Q Consensus       210 ------------------~~-----------------------------------------------------------~  212 (326)
                                        +.                                                           +
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                              00                                                           0


Q ss_pred             CCceeeeEEee--------------------------------cCCCcEEEEEeCCCeEEEEeCCCCCC---ceeEEe--
Q 020454          213 PTWFTSAAFLS--------------------------------IDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFD--  255 (326)
Q Consensus       213 ~~~v~~~~~~p--------------------------------~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~--  255 (326)
                      ...|++++|++                                .+++++|++++.|++|++||+..+..   ......  
T Consensus       401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~  480 (902)
T 2oaj_A          401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS  480 (902)
T ss_dssp             TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence            01122222211                                02466899999999999999886521   111211  


Q ss_pred             -----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----------------------------------------
Q 020454          256 -----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------------------------------  290 (326)
Q Consensus       256 -----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----------------------------------------  290 (326)
                           .|...|++|+|+|++++||+|+.||+|++||+.++                                        
T Consensus       481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence                 67789999999999999999999999999999866                                        


Q ss_pred             -----eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          291 -----KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       291 -----~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                           +++..+.+| .+.|++|+|+|+| +||+|+.|+.+
T Consensus       561 ~~~g~~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D~tv  598 (902)
T 2oaj_A          561 VRQGFMPSTAVHAN-KGKTSAINNSNIG-FVGIAYAAGSL  598 (902)
T ss_dssp             CSEEEEEEEEECCC-SCSEEEEEECBTS-EEEEEETTSEE
T ss_pred             CCCccceeEEEEcC-CCcEEEEEecCCc-EEEEEeCCCcE
Confidence                 246778888 9999999999999 99999999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.9e-31  Score=217.12  Aligned_cols=241  Identities=13%  Similarity=0.131  Sum_probs=176.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+|++|+.||.|+||++... ..  +....+.  .+...+.++.|.....+++|++|+.||+|++||+.+++....... 
T Consensus        22 ~~las~s~D~~v~iw~~~~~-~~--~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-   95 (297)
T 2pm7_B           22 KRMATCSSDKTIKIFEVEGE-TH--KLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-   95 (297)
T ss_dssp             SEEEEEETTSCEEEEEBCSS-CB--CCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-
T ss_pred             CEEEEEeCCCEEEEEecCCC-Cc--EEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-
Confidence            57999999999999999753 11  2223443  334456666665443466899999999999999987653222111 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  173 (326)
                           ..|...|.++.+.+..      .+..+++++.||.|++|++......      ...... .+...|.+++|+|+ 
T Consensus        96 -----~~h~~~v~~v~~~p~~------~g~~l~s~s~d~~v~~wd~~~~~~~------~~~~~~-~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           96 -----AVHSASVNSVQWAPHE------YGPMLLVASSDGKVSVVEFKENGTT------SPIIID-AHAIGVNSASWAPAT  157 (297)
T ss_dssp             -----CCCSSCEEEEEECCGG------GCSEEEEEETTSEEEEEEBCSSSCB------CCEEEE-CCSSCEEEEEECCCC
T ss_pred             -----ecCCCceeEEEeCcCC------CCcEEEEEECCCcEEEEEecCCCce------eeeeee-cccCccceEeecCCc
Confidence                 1456789988875521      1468999999999999998754211      112222 45678999999996 


Q ss_pred             ------------CCEEEEecCCCeEEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEEeCC
Q 020454          174 ------------EKFSLFGGKGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND  236 (326)
Q Consensus       174 ------------~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~~~d  236 (326)
                                  +++|++|+.|+.|++||+++++    ....+..|.         .+|.+++|+|.. .+.+|++++.|
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~---------~~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS---------DWVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS---------SCEEEEEECCCCSSSEEEEEEETT
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC---------CceEEEEECCCCCCceEEEEEECC
Confidence                        4799999999999999998765    344455443         679999999952 14699999999


Q ss_pred             CeEEEEeCCCCCCc-e-eEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          237 HQVRLYDTSAQRRP-V-MSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       237 g~v~iwd~~~~~~~-~-~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ++|++||++....+ . ..+  ..+...|.+++|+|++++|++++.||.|++|+..
T Consensus       229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999998864221 1 222  3467889999999999999999999999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-31  Score=222.52  Aligned_cols=242  Identities=12%  Similarity=0.059  Sum_probs=175.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+|++|+.||.|++||+..+   .......+.  .+...+.++.|.....+++|++|+.|++|++||+++++....... 
T Consensus        26 ~~lasgs~D~~v~lwd~~~~---~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-   99 (316)
T 3bg1_A           26 TRLATCSSDRSVKIFDVRNG---GQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-   99 (316)
T ss_dssp             CEEEEEETTTEEEEEEEETT---EEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-
T ss_pred             CEEEEEeCCCeEEEEEecCC---CcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-
Confidence            57999999999999999865   111223333  344456666665433456899999999999999987653222221 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC-
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  173 (326)
                           ..|...|.++.+.+..      .+..+++++.||.|++|++......      .+......+...+.+++|+|+ 
T Consensus       100 -----~~h~~~V~~v~~~p~~------~g~~lasgs~D~~i~lwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A          100 -----AGHDSSVNSVCWAPHD------YGLILACGSSDGAISLLTYTGEGQW------EVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             -----CCCSSCCCEEEECCTT------TCSCEEEECSSSCEEEEEECSSSCE------EECCBTTSSSSCBCCCEECCCC
T ss_pred             -----cCCCCceEEEEECCCC------CCcEEEEEcCCCCEEEEecCCCCCc------ceeeeeccccCCcceEEEcccc
Confidence                 1566789988875521      2468999999999999998653210      000001134557888888886 


Q ss_pred             ----------------CCEEEEecCCCeEEEEECCCc---eeeeeecCCCCCCCCcCCCCceeeeEEeecC--CCcEEEE
Q 020454          174 ----------------EKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVA  232 (326)
Q Consensus       174 ----------------~~~l~sg~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~~l~~  232 (326)
                                      +++|++|+.|+.|++||++..   +.+..+..|         ..+|.+++|+|..  ++.+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h---------~~~V~~v~~sp~~~~~~~~las  233 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH---------SDWVRDVAWAPSIGLPTSTIAS  233 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC---------SSCEEEEECCCCSSCSCCEEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC---------CCceEEEEecCCCCCCCceEEE
Confidence                            478999999999999999754   344444443         3679999999953  2368999


Q ss_pred             EeCCCeEEEEeCCCCC---CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          233 GTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       233 ~~~dg~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ++.|++|++||++...   .....+..|...|.+++|+|++++|++|+.||.|++|+..
T Consensus       234 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          234 CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999999987521   1233456678899999999999999999999999999976

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-30  Score=218.69  Aligned_cols=258  Identities=11%  Similarity=0.051  Sum_probs=193.1

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc----eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~  125 (326)
                      +...+.++.|.  +++++|++|+.||.|++||+.++.    ....+.        .+..+|.++.+.+..      ++..
T Consensus        10 H~~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~------d~~~   73 (351)
T 3f3f_A           10 HDDLVHDVVYD--FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--------AHDSSIVAIDWASPE------YGRI   73 (351)
T ss_dssp             CSSCEEEEEEC--SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--------CCSSCEEEEEECCGG------GCSE
T ss_pred             cccceeEEEEc--CCCCEEEEeeCCCeEEEEECCCCCCcceecceec--------cCCCcEEEEEEcCCC------CCCE
Confidence            44556666664  456689999999999999998653    222222        566889999875521      2568


Q ss_pred             EEEEecCCcEEEEEcccccccccc-ccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454          126 LLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (326)
Q Consensus       126 l~~~~~~g~v~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~  202 (326)
                      +++++.||.|++|+++........ ....+..+. .+...|.+++|+|+  +++|++++.|+.|++||+++++.+..+..
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  152 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL  152 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence            999999999999998764321111 112333333 45678999999999  99999999999999999988764433211


Q ss_pred             C----CCCCCCcCCCCceeeeEEeec-CCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEeecCCceEEEEecCCC----Ce
Q 020454          203 P----PKNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDS----FN  272 (326)
Q Consensus       203 ~----~~~~~~~~~~~~v~~~~~~p~-~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~~----~~  272 (326)
                      .    ........+...+.+++|+|. .++.++++++.++.+.+|+...... .+..+..|...|++++|+|++    ++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~  232 (351)
T 3f3f_A          153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL  232 (351)
T ss_dssp             EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred             cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence            0    000001123457889999984 1256999999999998888775521 256677889999999999998    89


Q ss_pred             EEEEcCCCcEEEEECCCC----------------------------------------------eEEEEEcceecceEEE
Q 020454          273 IYIGNGSGDLASVDIRTG----------------------------------------------KLLGCFIGKCSGSIRS  306 (326)
Q Consensus       273 l~~g~~dg~v~iwd~~~~----------------------------------------------~~~~~~~~~~~~~v~~  306 (326)
                      |++|+.||.|++||++++                                              +.+..+.+| ...|++
T Consensus       233 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~  311 (351)
T 3f3f_A          233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH-NGEVWS  311 (351)
T ss_dssp             EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT-SSCEEE
T ss_pred             EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc-cccEEE
Confidence            999999999999999875                                              667778888 999999


Q ss_pred             EEECCCCCEEEEeccCccC
Q 020454          307 IARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       307 l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++|+|++++|++++.||.+
T Consensus       312 ~~~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          312 VSWNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             EEECSSSCCEEEEETTSCE
T ss_pred             EEEcCCCCEEEEecCCCcE
Confidence            9999999999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-30  Score=219.98  Aligned_cols=269  Identities=10%  Similarity=0.064  Sum_probs=200.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..|++|+.+|.|++|++...  +. .+...+..  +...+.+++|.  +.+++|++++.||.|++||+.+++.+...   
T Consensus        55 ~~l~~~~~dg~i~iw~~~~~--~~-~~~~~~~~--h~~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---  124 (368)
T 3mmy_A           55 NFLIAGSWANDVRCWEVQDS--GQ-TIPKAQQM--HTGPVLDVCWS--DDGSKVFTASCDKTAKMWDLSSNQAIQIA---  124 (368)
T ss_dssp             EEEEEEETTSEEEEEEECTT--SC-EEEEEEEE--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred             eEEEEECCCCcEEEEEcCCC--Cc-eeEEEecc--ccCCEEEEEEC--cCCCEEEEEcCCCcEEEEEcCCCCceeec---
Confidence            68999999999999999862  11 12123332  33445555554  45668999999999999999888765532   


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...|.++.+.+.      +++..+++++.||.|++||+....        .+..+..  ...+.++.+.+  
T Consensus       125 ------~~~~~v~~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~--~~~~~~~~~~~--  180 (368)
T 3mmy_A          125 ------QHDAPVKTIHWIKA------PNYSCVMTGSWDKTLKFWDTRSSN--------PMMVLQL--PERCYCADVIY--  180 (368)
T ss_dssp             ------ECSSCEEEEEEEEC------SSCEEEEEEETTSEEEEECSSCSS--------CSEEEEC--SSCEEEEEEET--
T ss_pred             ------cccCceEEEEEEeC------CCCCEEEEccCCCcEEEEECCCCc--------EEEEEec--CCCceEEEecC--
Confidence                  34578998887321      155689999999999999987543        3334443  34666676664  


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC--CcEEEEEeCCCeEEEEeCCCCC--Cc
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQR--RP  250 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~~l~~~~~dg~v~iwd~~~~~--~~  250 (326)
                      ..+++++.++.+++||++............       ....+..+.+.+...  ...+++++.||.|++||++...  ..
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESP-------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCS-------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhcccc-------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence            578888899999999998765544332211       112345556555322  1249999999999999998652  23


Q ss_pred             eeEEeecCC------------ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEE
Q 020454          251 VMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       251 ~~~~~~~~~------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s  318 (326)
                      +..+..|..            .|++++|+|++++|++|+.||.|++||+++++++..+.+| ..+|++++|+|++++|++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTSSCEEE
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCCCeEEE
Confidence            556666654            7999999999999999999999999999999999999998 999999999999999999


Q ss_pred             eccCccC
Q 020454          319 CGFLEAA  325 (326)
Q Consensus       319 ~s~D~~~  325 (326)
                      +|.|+..
T Consensus       333 ~s~d~~~  339 (368)
T 3mmy_A          333 ASSYDWS  339 (368)
T ss_dssp             EECCCST
T ss_pred             Eeccccc
Confidence            9999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-30  Score=217.55  Aligned_cols=238  Identities=13%  Similarity=0.088  Sum_probs=189.0

Q ss_pred             ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      ..+.++++.  +.+++|++++ ||.|++||+.+++....+.....   ..+...+.++.+.+        ++..+++++.
T Consensus        52 ~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~--------~~~~l~~~~~  117 (337)
T 1gxr_A           52 EVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC---LNRDNYIRSCKLLP--------DGCTLIVGGE  117 (337)
T ss_dssp             SCCCEEEEC--SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC---SCTTSBEEEEEECT--------TSSEEEEEES
T ss_pred             CceEEEEEe--cCCcEEEEcC-CCeEEEEECCCCCceeeeecccc---cCCCCcEEEEEEcC--------CCCEEEEEcC
Confidence            344445553  4566888888 99999999987664333332110   14557899888765        5678999999


Q ss_pred             CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      +|.|++|+++....      .....+ ..+...+.+++++|++++|++++.|+.|++||+++++.+..+..+.       
T Consensus       118 d~~i~~~d~~~~~~------~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-------  183 (337)
T 1gxr_A          118 ASTLSIWDLAAPTP------RIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-------  183 (337)
T ss_dssp             SSEEEEEECCCC--------EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-------
T ss_pred             CCcEEEEECCCCCc------ceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc-------
Confidence            99999999875431      112222 2356789999999999999999999999999999998888776644       


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                        ..+.+++|+|  ++++|++++.|+.|++||+++. +.+..+ .+...+.+++|+|++++|++++.+|.|++||+++++
T Consensus       184 --~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          184 --DGASCIDISN--DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             --SCEEEEEECT--TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             --CceEEEEECC--CCCEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence              5688999998  5669999999999999999976 445555 466889999999999999999999999999999887


Q ss_pred             EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .. .+..| ...|.+++|+|++++|++++.||.+
T Consensus       258 ~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i  289 (337)
T 1gxr_A          258 KY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             EE-EECCC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eE-EEcCC-ccceeEEEECCCCCEEEEecCCCcE
Confidence            64 56777 9999999999999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-30  Score=224.64  Aligned_cols=232  Identities=14%  Similarity=0.133  Sum_probs=183.1

Q ss_pred             CCeEEEEecCCcEEEEeccc----------cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEEEEecCC
Q 020454           65 DPLLAVARKNGLTDILNPLN----------GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKG  133 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g  133 (326)
                      ..+|++++.||.|++|++.+          .+.+..+.        .|...+.++.+.+        .+. .|++++.||
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~--------~~~~~l~s~~~dg  204 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR--------GHQKEGYGLSWNP--------NLNGYLLSASDDH  204 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE--------CCSSCCCCEEECT--------TSTTEEEEECTTS
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec--------CCCCCeEEEEeCC--------CCCCeEEEEeCCC
Confidence            45899999999999999975          23323332        4557888888755        334 899999999


Q ss_pred             cEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCc---eeeeeecCCCCCCCC
Q 020454          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKNSLG  209 (326)
Q Consensus       134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~  209 (326)
                      .|++|++....... ........+. .+...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+..|      
T Consensus       205 ~i~vwd~~~~~~~~-~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~------  276 (430)
T 2xyi_A          205 TICLWDINATPKEH-RVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH------  276 (430)
T ss_dssp             CEEEEETTSCCBGG-GEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC------
T ss_pred             eEEEEeCCCCCCCC-ceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC------
Confidence            99999987632110 0001122332 4567899999999 6789999999999999999976   344444443      


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIR  288 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~  288 (326)
                         ...|++++|+|. ...++++++.||.|++||++....++..+..|...|++++|+|+++ +|++++.||.|++||+.
T Consensus       277 ---~~~v~~i~~~p~-~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          277 ---TAEVNCLSFNPY-SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             ---SSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             ---CCCeEEEEeCCC-CCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence               356899999985 3347999999999999999986577889999999999999999985 58899999999999998


Q ss_pred             C--------------CeEEEEEcceecceEEEEEECCCCC-EEEEeccCccC
Q 020454          289 T--------------GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGFLEAA  325 (326)
Q Consensus       289 ~--------------~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s~D~~~  325 (326)
                      .              .+++..+.+| ...|++++|+|+++ +|++++.||.+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             CCccccCccccccCCcceEEEcCCC-CCCceEEEECCCCCCEEEEEECCCCE
Confidence            7              3667777887 99999999999999 99999999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.9e-33  Score=235.79  Aligned_cols=229  Identities=10%  Similarity=0.047  Sum_probs=175.6

Q ss_pred             CCCCCeEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      ++++++|++|+.||.|++||+.++  +.+..+.        .|...|.++.+.+        ++..|++++.||.|++|+
T Consensus        20 s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~s~--------~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C           20 NSQRTEFVTTTATNQVELYEQDGNGWKHARTFS--------DHDKIVTCVDWAP--------KSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             CSSSSEEECCCSSSCBCEEEEETTEEEECCCBC--------CCSSCEEEEEECT--------TTCCEEEEETTSSEEEC-
T ss_pred             CCCCCEEEEecCCCEEEEEEccCCceEEEEEEe--------cCCceEEEEEEeC--------CCCEEEEEeCCCeEEEEE
Confidence            345668999999999999999877  4433333        5668899999765        567899999999999999


Q ss_pred             ccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCce
Q 020454          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWF  216 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v  216 (326)
                      +.....     ...... -..+...|.+++|+|++++|++++.|+.|++||+++++.   ...+..        .+...|
T Consensus        84 ~~~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~h~~~v  149 (377)
T 3dwl_C           84 KRPDGT-----WKQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR--------PLRSTI  149 (377)
T ss_dssp             -----C-----CCCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS--------SCCSCE
T ss_pred             cCCCCc-----eeeeeE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec--------ccCCCe
Confidence            875430     001111 123567899999999999999999999999999998763   444433        023679


Q ss_pred             eeeEEeecCCCcEEEEEeCCCeEEEEeCCCC-----------------CCceeEEeecCCceEEEEecCCCCeEEEEcCC
Q 020454          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (326)
Q Consensus       217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~-----------------~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d  279 (326)
                      ++++|+|  ++++|++++.|+.|++||++..                 .+++..+ .|...|++++|+|++++|++|+.|
T Consensus       150 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          150 LSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             EEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred             EEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence            9999998  5669999999999999998522                 1234444 788899999999999999999999


Q ss_pred             CcEEEEECCCCeE----EEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          280 GDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       280 g~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      |.|++||+++++.    +..+.+| ..+|.+++|+|++++|++++.|+.
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~  274 (377)
T 3dwl_C          227 SSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSP  274 (377)
T ss_dssp             TEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSE
T ss_pred             CcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcE
Confidence            9999999999877    7788888 999999999999999999987764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-32  Score=226.68  Aligned_cols=229  Identities=7%  Similarity=0.034  Sum_probs=174.5

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      ++.+|++|+.||+|++||+.+++.+..+..          ..+..+.+.+          . +++++.|+.+++|+.+..
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~----------~~v~~~~~~~----------~-~~s~s~D~~i~~w~~~~~  105 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITT----------PNPRTGGEHP----------A-IISRGPCNRLLLLYPGNQ  105 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEE----------ECCCTTCCCC----------S-EEEECSTTEEEEEETTTE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEec----------CCceeeeeCC----------c-eEEecCCCeEEEEEccCc
Confidence            344799999999999999998887776653          4555555432          2 999999999999987643


Q ss_pred             cccccc-ccceEEEEEccCCCceEEEEEcC--CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454          144 KVSAES-SCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       144 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      ...... ....++.....+...|.+++++|  ++++|++++.|+.|++||+++++.+.....+.        ...+++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~~i~~~~  177 (343)
T 3lrv_A          106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------DVEYSSGV  177 (343)
T ss_dssp             EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------SCCCCEEE
T ss_pred             eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------CCceEEEE
Confidence            211111 12235555556667899999999  99999999999999999999988765543322        23488999


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc-
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-  298 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-  298 (326)
                      |+|  ++.+|++|+.||.|++||++++......+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+.. 
T Consensus       178 ~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~  254 (343)
T 3lrv_A          178 LHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY  254 (343)
T ss_dssp             ECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC
T ss_pred             ECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc
Confidence            998  5679999999999999999987443277887 899999999999999999999 45999999999876554432 


Q ss_pred             --eecceEE--EEEECCCCCEEEEecc-CccC
Q 020454          299 --KCSGSIR--SIARHPTLPIIASCGF-LEAA  325 (326)
Q Consensus       299 --~~~~~v~--~l~~~p~~~~l~s~s~-D~~~  325 (326)
                        | ...+.  +++|+|++++|++++. |+.+
T Consensus       255 ~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i  285 (343)
T 3lrv_A          255 TIP-EFKTGTVTYDIDDSGKNMIAYSNESNSL  285 (343)
T ss_dssp             BC------CCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ccc-cccccceEEEECCCCCEEEEecCCCCcE
Confidence              3 34444  6999999999999887 7653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5e-31  Score=225.73  Aligned_cols=251  Identities=12%  Similarity=0.119  Sum_probs=192.4

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc------eeeeecccCCCCCCCCCCCeeeeecccccccccCCC
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~  122 (326)
                      .+...+.+++|..    ++|++|+.||.|++|++.+++      ....+.        .+..+|.++.+.+...    .+
T Consensus        14 ~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~----~~   77 (397)
T 1sq9_A           14 AHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--------VHKSGLHHVDVLQAIE----RD   77 (397)
T ss_dssp             CSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--------CCTTCEEEEEEEEEEE----TT
T ss_pred             hhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--------cCCCcEEEEEEecccc----cC
Confidence            3455666777643    589999999999999998877      344443        4567899998766200    01


Q ss_pred             C---ceEEEEecCCcEEEEEccccccccccccceEEEEEccC----CCceEEEEEc----CCCCE-EEEecCCCeEEEEE
Q 020454          123 S---RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKVD----ISEKF-SLFGGKGVEVNVWD  190 (326)
Q Consensus       123 ~---~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~----~~~~~-l~sg~~d~~i~iwd  190 (326)
                      +   ..+++++.||.|++|++......   ....+..+....    ...|.+++|+    |++++ |++++.|+.|++||
T Consensus        78 g~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  154 (397)
T 1sq9_A           78 AFELCLVATTSFSGDLLFYRITREDET---KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  154 (397)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTT---CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             CccccEEEEEcCCCCEEEEEccCCccc---ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence            5   68999999999999998764420   001133333322    3789999999    99999 99999999999999


Q ss_pred             CCC------ceeee-----eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---
Q 020454          191 LDK------CEKIW-----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---  256 (326)
Q Consensus       191 ~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---  256 (326)
                      +++      ++.+.     .+....  .....+...|++++|+|  ++ ++++++.|+.|++||+++. +++..+..   
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~  228 (397)
T 1sq9_A          155 FHPFADESNSLTLNWSPTLELQGTV--ESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTL-RPLYNFESQHS  228 (397)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEE--CCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC-
T ss_pred             CCccccccccceeeccCcceeeeee--ccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCC-ceeEEEecccc
Confidence            987      55444     332100  00011345688999998  56 9999999999999999976 67888888   


Q ss_pred             c---CCceEEEEecCCCCeEEEEcCC---CcEEEEECCCCeEEEEEcc-------------eecceEEEEEECCCCCEEE
Q 020454          257 R---ETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIG-------------KCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       257 ~---~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~~~~~~~~~~~~-------------~~~~~v~~l~~~p~~~~l~  317 (326)
                      |   ...|.+++|+|++++|++++.|   |.|++||+++++.+..+.+             | ...|.+++|+|++++|+
T Consensus       229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEE
T ss_pred             ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEEEEECCCCCEEE
Confidence            8   8999999999999999999999   9999999999999999998             8 99999999999999999


Q ss_pred             EeccCccC
Q 020454          318 SCGFLEAA  325 (326)
Q Consensus       318 s~s~D~~~  325 (326)
                      +++.||.+
T Consensus       308 ~~~~dg~i  315 (397)
T 1sq9_A          308 SAGWDGKL  315 (397)
T ss_dssp             EEETTSEE
T ss_pred             EEeCCCeE
Confidence            99999865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-31  Score=223.90  Aligned_cols=259  Identities=8%  Similarity=-0.006  Sum_probs=182.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc---------cc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---------NG   85 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~---------~~   85 (326)
                      ..+++|+.||.|++||+.++     +....+..  .  .+..+.+  .+.   +++++.|++|++|+..         ++
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~-----~~~~~~~~--~--~v~~~~~--~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDS-----KTITTITT--P--NPRTGGE--HPA---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSS-----SCEEEEEE--E--CCCTTCC--CCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             CEEEEECCCCcEEEEECCCC-----cEEEEEec--C--Cceeeee--CCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            67999999999999999877     33323321  0  1111111  122   8999999999999765         33


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCce
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v  165 (326)
                      +.+..+..       .+.++|.++.+.+..      .+..+++++.||.|++||++...        .+......+...+
T Consensus       115 ~~~~~~~~-------~~~~~v~~~~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~--------~~~~~~~~~~~~i  173 (343)
T 3lrv_A          115 KVLREIEV-------DSANEIIYMYGHNEV------NTEYFIWADNRGTIGFQSYEDDS--------QYIVHSAKSDVEY  173 (343)
T ss_dssp             CEEEEEEC-------CCSSCEEEEECCC---------CCEEEEEETTCCEEEEESSSSC--------EEEEECCCSSCCC
T ss_pred             ceeEEeec-------CCCCCEEEEEcCCCC------CCCEEEEEeCCCcEEEEECCCCc--------EEEEEecCCCCce
Confidence            32333332       444678888864311      34689999999999999987543        3444444556679


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCceee-eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC
Q 020454          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~  244 (326)
                      .+++|+|++.+|++|+.|+.|++||+++++.+ ..+..        .|...|++++|+|  ++.+|++++ |+.|++||+
T Consensus       174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--------~h~~~v~~l~fs~--~g~~l~s~~-~~~v~iwd~  242 (343)
T 3lrv_A          174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--------DEEAKIKEVKFAD--NGYWMVVEC-DQTVVCFDL  242 (343)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--------CTTSCEEEEEECT--TSSEEEEEE-SSBEEEEET
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--------cCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEEc
Confidence            99999999999999999999999999988776 45444        1236799999998  566999999 559999999


Q ss_pred             CCCCCceeEEee---cCCceE--EEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcceecceEEEEEECC---CCCE
Q 020454          245 SAQRRPVMSFDF---RETPIK--AVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---TLPI  315 (326)
Q Consensus       245 ~~~~~~~~~~~~---~~~~i~--~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p---~~~~  315 (326)
                      +.. ..+..+..   +...+.  +++|+|+|++|++++. |+.+++|++.+.......     .++..+.|.|   +...
T Consensus       243 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  316 (343)
T 3lrv_A          243 RKD-VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTD  316 (343)
T ss_dssp             TSS-TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCE
T ss_pred             CCC-CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccce
Confidence            976 33433332   333443  6999999999999988 999999999765433221     4677788887   7778


Q ss_pred             EEEeccCccC
Q 020454          316 IASCGFLEAA  325 (326)
Q Consensus       316 l~s~s~D~~~  325 (326)
                      |++++.||.+
T Consensus       317 l~~~~~d~~~  326 (343)
T 3lrv_A          317 MDVVCGDGGI  326 (343)
T ss_dssp             EEEEEETTEE
T ss_pred             eEEEecCCce
Confidence            8888888754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-30  Score=220.69  Aligned_cols=233  Identities=9%  Similarity=0.069  Sum_probs=188.2

Q ss_pred             EEEEEeeeCCCCCeEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      +.++++.  +++++|++|+.||.|++||+.+++  .+..+.        .+...|.++.+.+        ++..+++++.
T Consensus        11 i~~~~~s--~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~l~~~~~   72 (372)
T 1k8k_C           11 ISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------EHNGQVTGVDWAP--------DSNRIVTCGT   72 (372)
T ss_dssp             CCEEEEC--TTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------CCSSCEEEEEEET--------TTTEEEEEET
T ss_pred             eEEEEEC--CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------CCCCcccEEEEeC--------CCCEEEEEcC
Confidence            3344443  456689999999999999998876  444444        4567899998766        5678999999


Q ss_pred             CCcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee---eeeecCCCCCC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNS  207 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~  207 (326)
                      ||.|++|+++...        ...... ..+...|.+++|+|++++|++++.|+.|++||++..+.   ......     
T Consensus        73 dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-----  139 (372)
T 1k8k_C           73 DRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-----  139 (372)
T ss_dssp             TSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT-----
T ss_pred             CCeEEEEECCCCe--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec-----
Confidence            9999999986533        122222 34567899999999999999999999999999987653   222211     


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC------------------CCCCceeEEeecCCceEEEEecCC
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS------------------AQRRPVMSFDFRETPIKAVAEEPD  269 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~------------------~~~~~~~~~~~~~~~i~~v~~s~~  269 (326)
                         .+...|++++|+|  ++++|++++.|+.|++||++                  .. .++..+..|...|.+++|+|+
T Consensus       140 ---~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~  213 (372)
T 1k8k_C          140 ---PIRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSAN  213 (372)
T ss_dssp             ---TCCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSS
T ss_pred             ---ccCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchh-hheEecCCCCCeEEEEEECCC
Confidence               1235699999998  56699999999999999964                  23 567777788899999999999


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       270 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++|++++.||.|++||+++++++..+..| ..+|.+++|+|++.+|+++ .|+.+
T Consensus       214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i  267 (372)
T 1k8k_C          214 GSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFP  267 (372)
T ss_dssp             SSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred             CCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeE
Confidence            999999999999999999999999999998 9999999999999988877 78764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-30  Score=222.62  Aligned_cols=267  Identities=8%  Similarity=0.079  Sum_probs=202.5

Q ss_pred             cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc-----CCC
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA-----GDS   97 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~-----~~~   97 (326)
                      ++.+++|+....     +......  .+...+.++.+.. .++++|++|+.||.|++||+.+++....+...     ...
T Consensus        22 ~~~~~v~~~~~~-----~~~~~~~--~h~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   93 (408)
T 4a11_B           22 ESTRRVLGLELN-----KDRDVER--IHGGGINTLDIEP-VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD   93 (408)
T ss_dssp             HHHHHHHTEEEC-----TTEEECC--CCSSCEEEEEECT-TTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred             cCcceeeccccC-----cceeeee--ccCCcEEEEEEec-CCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence            445777887755     2222222  2445566666643 15668999999999999999877655544311     000


Q ss_pred             CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC---C
Q 020454           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---E  174 (326)
Q Consensus        98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~  174 (326)
                      ....+...|.++.+.+.       ....+++++.||.|++|++....        .+..+.  ....+.++.+++.   +
T Consensus        94 ~~~~~~~~v~~~~~~~~-------~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~  156 (408)
T 4a11_B           94 HPDVHRYSVETVQWYPH-------DTGMFTSSSFDKTLKVWDTNTLQ--------TADVFN--FEETVYSHHMSPVSTKH  156 (408)
T ss_dssp             CTTCCSSCEEEEEECTT-------CTTCEEEEETTSEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSCSSC
T ss_pred             ccccCCCcEEEEEEccC-------CCcEEEEEeCCCeEEEeeCCCCc--------cceecc--CCCceeeeEeecCCCCC
Confidence            11246688999987551       34589999999999999987543        334444  4668899999885   4


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  254 (326)
                      .++++++.|+.|++||+++++.+..+..+.         ..|++++|+|. ...+|++++.||.|++||++....++..+
T Consensus       157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~v~~~~~~~~-~~~ll~~~~~dg~i~i~d~~~~~~~~~~~  226 (408)
T 4a11_B          157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHR---------QEILAVSWSPR-YDYILATASADSRVKLWDVRRASGCLITL  226 (408)
T ss_dssp             CEEEEEESSSSEEEEESSSSCCCEEECCCC---------SCEEEEEECSS-CTTEEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred             cEEEEEcCCCeEEEEeCCCcceeeeecCCC---------CcEEEEEECCC-CCcEEEEEcCCCcEEEEECCCCCcccccc
Confidence            599999999999999999988877776544         56899999984 23368999999999999998765455554


Q ss_pred             ---------------eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC-----------------------------
Q 020454          255 ---------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-----------------------------  290 (326)
Q Consensus       255 ---------------~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~-----------------------------  290 (326)
                                     ..|...|++++|+|++++|++++.||.|++||++++                             
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
T 4a11_B          227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE  306 (408)
T ss_dssp             CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC
T ss_pred             cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCce
Confidence                           467789999999999999999999999999998753                             


Q ss_pred             ------------------eEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          291 ------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       291 ------------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                                        +++..+.+| .+.|++++|+|++++|++++.||.+
T Consensus       307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i  358 (408)
T 4a11_B          307 FVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQSNFQELYSGSRDCNI  358 (408)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcCCCCEEEEECCCCeE
Confidence                              456667787 9999999999999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-30  Score=219.52  Aligned_cols=242  Identities=13%  Similarity=0.088  Sum_probs=185.5

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEecc--ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      ...+.++.|.  +.+++|++|+.||.|++|++.  +++.+..+.        .|..+|.++.+.+..      ++..+++
T Consensus        11 ~~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~------~~~~l~s   74 (379)
T 3jrp_A           11 NELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------GHEGPVWRVDWAHPK------FGTILAS   74 (379)
T ss_dssp             CCCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--------CCSSCEEEEEECCGG------GCSEEEE
T ss_pred             cccEEEEEEc--CCCCEEEEEECCCcEEEEecCCCcceeeeEec--------CCCCcEEEEEeCCCC------CCCEEEE
Confidence            3445555554  456689999999999999997  334433333        566889999875421      2678999


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee--eeeecCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPP  204 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~  204 (326)
                      ++.||.|++|++.....      ..+..+ ..+...|.+++|+|+  +++|++++.|+.|++||+++...  ...+..  
T Consensus        75 ~~~dg~v~iwd~~~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--  145 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--  145 (379)
T ss_dssp             EETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC--
T ss_pred             eccCCEEEEEEcCCCce------eEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC--
Confidence            99999999999875321      122222 235678999999999  89999999999999999987643  223333  


Q ss_pred             CCCCCcCCCCceeeeEEeecC-----------CCcEEEEEeCCCeEEEEeCCCCCC---ceeEEeecCCceEEEEecCC-
Q 020454          205 KNSLGIFTPTWFTSAAFLSID-----------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD-  269 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~-----------~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~-  269 (326)
                             +...|++++|+|..           ++.+|++++.|+.|++||++....   ....+..|...|++++|+|+ 
T Consensus       146 -------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  218 (379)
T 3jrp_A          146 -------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  218 (379)
T ss_dssp             -------CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             -------CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence                   23568999999841           356999999999999999986532   33566678999999999999 


Q ss_pred             --CCeEEEEcCCCcEEEEECCCCe-----EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          270 --SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       270 --~~~l~~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                        +++|++++.||.|++||+++++     .+.....| ...|.+++|+|++++|++++.||.+
T Consensus       219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i  280 (379)
T 3jrp_A          219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKV  280 (379)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSE
T ss_pred             CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcE
Confidence              8999999999999999999863     12222235 8899999999999999999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-31  Score=234.78  Aligned_cols=239  Identities=11%  Similarity=0.065  Sum_probs=171.1

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeee-cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      ..+|++++.|++|+||++.+++..... ..+     ..+.+.|..+.+.+...  ..++...|++++.||.|++|++...
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-----~~~~~~V~~v~wsp~~~--~~~~~~~LAs~s~DgtvrlWd~~~~  245 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-----VHSFGEVWDLKWHEGCH--APHLVGCLSFVSQEGTINFLEIIDN  245 (524)
T ss_dssp             ---------CEEEEEEEEETTTCCEEEEEEE-----EECCCSEEEEEECSSCC--CSSSSCEEEEEETTSCEEEEECCCC
T ss_pred             hhhhccCCCCceEEEEEccCCCCCceEEEEE-----EecCCcEEEEEECCCCC--CCCCCceEEEEecCCeEEEEEcCCC
Confidence            345777889999999999776642211 100     03346788888755210  0012468999999999999998754


Q ss_pred             ccccc---cccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeee
Q 020454          144 KVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       144 ~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      .....   ........+. .+...|.+++|+++ ..|++|+.|++|++||+++++ +...+..|.         ..|+++
T Consensus       246 ~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~---------~~V~sv  314 (524)
T 2j04_B          246 ATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD---------SYILSV  314 (524)
T ss_dssp             SSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSS---------SCEEEE
T ss_pred             ccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccc---------ccEEEE
Confidence            31100   0011122222 34578999999985 589999999999999998763 333444443         568898


Q ss_pred             E--EeecCCC-cEEEEEeCCCeEEEEeCCCCCCceeEEeecCC--ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454          220 A--FLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (326)
Q Consensus       220 ~--~~p~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~  294 (326)
                      +  |+|  ++ ++|++++.|++|+|||+++. ++...+..|..  .|.+++|+|+++.+++++.|++|++||++++.++.
T Consensus       315 ~~~~s~--~g~~~laS~S~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~  391 (524)
T 2j04_B          315 STAYSD--FEDTVVSTVAVDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH  391 (524)
T ss_dssp             EEECCT--TSCCEEEEEETTSEEEEECGGGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred             EEEcCC--CCCeEEEEeccCCeEEEEECCCC-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence            4  444  44 69999999999999999976 44556655543  58899999999999999999999999999999888


Q ss_pred             EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          295 CFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       295 ~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+.+| .+.|++|+|+|++++|++||.||.+
T Consensus       392 ~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          392 PLVSR-ETTITAIGVSRLHPMVLAGSADGSL  421 (524)
T ss_dssp             EEEEC-SSCEEEEECCSSCCBCEEEETTTEE
T ss_pred             eeecC-CCceEEEEeCCCCCeEEEEECCCEE
Confidence            88898 9999999999999999999999976

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.2e-30  Score=223.06  Aligned_cols=245  Identities=7%  Similarity=-0.009  Sum_probs=164.1

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      ..+|++|+.|++|+|||..+++........   ....|.+.|.++.+.+........++..|++++.|++|++||+....
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~---~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLG---GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEEC---TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeec---ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            347999999999999999877653321110   11378899999997542211111145689999999999999986543


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCC----------------
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS----------------  207 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------  207 (326)
                      .       ....+  .+...+.+++|+|++ ++|++|+.|++|++||+++++.......+....                
T Consensus       178 ~-------~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          178 P-------ILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             E-------EEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             e-------eeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            1       22222  346789999999987 589999999999999999876544332211110                


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE------------------EEecC-
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA------------------VAEEP-  268 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~------------------v~~s~-  268 (326)
                      ....+...+.++.|.+. +++.+++++.|+++++||+... +....+..+...+..                  ..|+| 
T Consensus       249 ~~~~~~~~v~~v~~~~~-dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGS-DGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             ---CCSSSCSEEEEETT-TTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             ecccccccceeeeeecC-CCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence            01123456888898853 6779999999999999999865 323333333222222                  23333 


Q ss_pred             -CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          269 -DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       269 -~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                       ++.++++|+.||.|++||+.++++...+.+| ..+|++++|+|++++||+++.||.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~-~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQL-GMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEEC-SSCEEEEEECTTSSEEEEEESSEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCC-CCcEEEEEEcCCCCEEEEEeCCCe
Confidence             3446678999999999999999988888887 889999999999999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-30  Score=234.99  Aligned_cols=239  Identities=12%  Similarity=0.121  Sum_probs=188.8

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-----eeeecccCCCCCCCCCCCeeeeecccccccccCCCC
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  123 (326)
                      .+...+.++++... ..++|++|+.||+|++|++.+...     ...+.        .|...|.++.+.+        ++
T Consensus       380 ~H~~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~v~~s~--------~g  442 (694)
T 3dm0_A          380 AHTDMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--------GHSHFVEDVVLSS--------DG  442 (694)
T ss_dssp             CCSSCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--------CCSSCEEEEEECT--------TS
T ss_pred             cCCceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceec--------CCCCcEEEEEECC--------CC
Confidence            34455556665432 345899999999999999875432     12222        5668899888765        66


Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      ..+++++.||.|++||+....        .++.+. .|...|.+++|+|++++|++|+.|++|++||+............
T Consensus       443 ~~l~sgs~Dg~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  513 (694)
T 3dm0_A          443 QFALSGSWDGELRLWDLAAGV--------STRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG  513 (694)
T ss_dssp             SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred             CEEEEEeCCCcEEEEECCCCc--------ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC
Confidence            789999999999999986543        334443 45778999999999999999999999999998755433222111


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~  283 (326)
                            ..|..+|.+++|+|......+++++.|++|++||++.. +....+..|...|++++|+|++++|++|+.||.|+
T Consensus       514 ------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~  586 (694)
T 3dm0_A          514 ------EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL  586 (694)
T ss_dssp             ------TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred             ------CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence                  12446799999999644458999999999999999976 66788889999999999999999999999999999


Q ss_pred             EEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      +||+++++.+..+..  ...|.+++|+|++.+|++++.+
T Consensus       587 iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~  623 (694)
T 3dm0_A          587 LWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAATEH  623 (694)
T ss_dssp             EEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEETT
T ss_pred             EEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEcCC
Confidence            999999999887763  5689999999999888877644

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.1e-30  Score=247.99  Aligned_cols=274  Identities=9%  Similarity=0.075  Sum_probs=217.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.+|.|++|++.++     +....+..  +...+.++.|.  +++++|++|+.||+|++||+.+++.+..+.  
T Consensus       628 ~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~--h~~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--  696 (1249)
T 3sfz_A          628 QRIASCGADKTLQVFKAETG-----EKLLDIKA--HEDEVLCCAFS--SDDSYIATCSADKKVKIWDSATGKLVHTYD--  696 (1249)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEEEECC--CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CEEEEecc--CCCCEEEEEEe--cCCCEEEEEeCCCeEEEEECCCCceEEEEc--
Confidence            46899999999999999887     44445543  34455555554  456699999999999999999998877766  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...|.++.+.+..      ....+++++.||.|++|++....        .+..+. .+...|.+++|+|++
T Consensus       697 ------~~~~~v~~~~~~~~~------~~~~l~sg~~d~~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~sp~~  755 (1249)
T 3sfz_A          697 ------EHSEQVNCCHFTNKS------NHLLLATGSNDFFLKLWDLNQKE--------CRNTMF-GHTNSVNHCRFSPDD  755 (1249)
T ss_dssp             ------CCSSCEEEEEECSSS------SCCEEEEEETTSCEEEEETTSSS--------EEEEEC-CCSSCEEEEEECSST
T ss_pred             ------CCCCcEEEEEEecCC------CceEEEEEeCCCeEEEEECCCcc--------hhheec-CCCCCEEEEEEecCC
Confidence                  556789888875521      34578899999999999987543        233332 456789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCC----CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL----GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      ++|++++.|+.|++||+++++.............    .......+.+++|+|  ++..+++++ ++.+.+||+.+. ..
T Consensus       756 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~~-~~~v~~~d~~~~-~~  831 (1249)
T 3sfz_A          756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAA-KNKVLLFDIHTS-GL  831 (1249)
T ss_dssp             TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEEE-TTEEEEEETTTC-CE
T ss_pred             CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC--CCCEEEEEc-CCcEEEEEecCC-Cc
Confidence            9999999999999999998876655432211100    011223688899998  566777776 789999999987 44


Q ss_pred             eeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          251 VMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       251 ~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..+. .|...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+| .+.|.+++|+|++++|++++.||.+
T Consensus       832 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~s~s~dg~v  906 (1249)
T 3sfz_A          832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH-LSWVHGVMFSPDGSSFLTASDDQTI  906 (1249)
T ss_dssp             EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC-ccceEEEEECCCCCEEEEEeCCCeE
Confidence            55554 78899999999999999999999999999999999999999998 9999999999999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-30  Score=251.11  Aligned_cols=276  Identities=13%  Similarity=0.233  Sum_probs=222.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.||.|+|||+.++     +....+..+  ...+.++.|.......++++|+.||.|++||+.+++....+.  
T Consensus       670 ~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~--~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--  740 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSATG-----KLVHTYDEH--SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF--  740 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTTC-----CEEEEEECC--SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC--
T ss_pred             CEEEEEeCCCeEEEEECCCC-----ceEEEEcCC--CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec--
Confidence            57899999999999999987     555565543  445556677666566789999999999999999888766655  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc----------------------------
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS----------------------------  146 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~----------------------------  146 (326)
                            .|.+.|.++.+.+        ++..+++++.||.|++|++......                            
T Consensus       741 ------~h~~~v~~~~~sp--------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          741 ------GHTNSVNHCRFSP--------DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             ------CCSSCEEEEEECS--------STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             ------CCCCCEEEEEEec--------CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence                  5667899898766        6679999999999999998754210                            


Q ss_pred             -------cccccceEEEEEcc-----------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          147 -------AESSCSTVKSWNVC-----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       147 -------~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                             ....++.+.+|+..           +...|.+++|+|+++++++++.|+.|++||+.+++.+..+..|.    
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~----  882 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL----  882 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS----
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc----
Confidence                   01123456677653           34568899999999999999999999999999999888877654    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC----------------------------cee--------
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----------------------------PVM--------  252 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~----------------------------~~~--------  252 (326)
                           .+|++++|+|  ++++|++++.|+.|++||+.....                            .+.        
T Consensus       883 -----~~v~~v~~sp--dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  955 (1249)
T 3sfz_A          883 -----SWVHGVMFSP--DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ  955 (1249)
T ss_dssp             -----SCEEEEEECT--TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred             -----cceEEEEECC--CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence                 6699999998  566999999999999999653100                            000        


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ........+.+++|+|+++++++|+.+|.|++||+.+++....+.+| ...|++++|+|++++|++++.||.+
T Consensus       956 ~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~i 1027 (1249)
T 3sfz_A          956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVI 1027 (1249)
T ss_dssp             EEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC-SSCCCCEEECSSSSCEEEECSSSBE
T ss_pred             EEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC-CCceEEEEECCCCCEEEEEcCCCEE
Confidence            01123457999999999999999999999999999999999999998 9999999999999999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.8e-31  Score=227.19  Aligned_cols=258  Identities=12%  Similarity=0.154  Sum_probs=192.1

Q ss_pred             eeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc---cceeeeecccCCCCCCCCCCCeeeeeccccccc
Q 020454           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (326)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  117 (326)
                      +...+. ..+...+.++++... ++++|++|+.||+|++||+.+   +........+      .+...|.++.+.+    
T Consensus        54 ~~~~~~-~~h~~~V~~~~~s~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~----  121 (437)
T 3gre_A           54 LIATLM-ENEPNSITSSAVSPG-ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY------DCSSTVTQITMIP----  121 (437)
T ss_dssp             EEEEEC-TTTTSCEEEEEEECS-SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE------ECSSCEEEEEECT----
T ss_pred             EEeeec-cCCCCceEEEEECCC-CCCEEEEecCCceEEEeECcccccCcccceeeec------cCCCCEEEEEEeC----
Confidence            444442 223455666666541 455899999999999999976   3322111111      3457899999765    


Q ss_pred             ccCCCCceEEEEecCCcEEEEEcccc---ccccccccceEEEEEcc---CCCceEEEE--EcCCCCEEEEecCCCeEEEE
Q 020454          118 ESSSRSRTLLTCTTKGKASMRSIEVT---KVSAESSCSTVKSWNVC---ASGTIAFSK--VDISEKFSLFGGKGVEVNVW  189 (326)
Q Consensus       118 ~~~~~~~~l~~~~~~g~v~i~~~~~~---~~~~~~~~~~~~~~~~~---~~~~v~~~~--~~~~~~~l~sg~~d~~i~iw  189 (326)
                          +...+++++.||.|++|+++..   ..........++.....   ....+.++.  +++++++|++|+.|+.|++|
T Consensus       122 ----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          122 ----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             ----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             ----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                5678999999999999998632   11111111233333333   456677777  66889999999999999999


Q ss_pred             ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEec-
Q 020454          190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEE-  267 (326)
Q Consensus       190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s-  267 (326)
                      |+++++.+..+..+.       +...|++++|+|  ++++|++++.||.|++||++.. +++..+. .+..+|++++|+ 
T Consensus       198 d~~~~~~~~~~~~~~-------h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          198 DIRTLERLQIIENSP-------RHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             ETTTCCEEEEEECCG-------GGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECT
T ss_pred             eCCCCeeeEEEccCC-------CCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEecc
Confidence            999999888876621       225699999998  4669999999999999999986 6677776 677799999655 


Q ss_pred             ---CCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-------------------------ecceEEEEEECCCCCEEEEe
Q 020454          268 ---PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------------CSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       268 ---~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~~v~~l~~~p~~~~l~s~  319 (326)
                         |++.+|++|+.||.|++||+++++.+..+.+|                         +...|++++|+ ++++|++|
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~  346 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD  346 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec
Confidence               56889999999999999999999988888754                         25668889998 67899999


Q ss_pred             ccCccC
Q 020454          320 GFLEAA  325 (326)
Q Consensus       320 s~D~~~  325 (326)
                      +.||.+
T Consensus       347 ~~d~~i  352 (437)
T 3gre_A          347 EATSSI  352 (437)
T ss_dssp             GGGTEE
T ss_pred             CCCCeE
Confidence            999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=2.1e-30  Score=225.24  Aligned_cols=254  Identities=13%  Similarity=0.143  Sum_probs=185.3

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc-----------eeeeecccCCCCCCCCC------------CCe
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----------LRVAISNAGDSGAQPED------------DGI  106 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~-----------~~~~~~~~~~~~~~~~~------------~~i  106 (326)
                      +...+.++.|.  +++++|++|+.||.|+||++.+++           ....+.        .|.            ..|
T Consensus        27 ~~~~V~~v~~s--~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           27 EADIISTVEFN--HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--------SHEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             GGGSEEEEEEC--SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--------CCCCEEEGGGTEEECCCC
T ss_pred             ccCcEEEEEEC--CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--------cccccccccccccccCce
Confidence            34556666665  456799999999999999998665           233333        344            678


Q ss_pred             eeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc-----c--------------------------ccceEE
Q 020454          107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE-----S--------------------------SCSTVK  155 (326)
Q Consensus       107 ~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~-----~--------------------------~~~~~~  155 (326)
                      .++.+.+..      ....+++++.||.|++|++........     .                          .....+
T Consensus        97 ~~l~~~~~~------~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (447)
T 3dw8_B           97 NKIRWLPQK------NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR  170 (447)
T ss_dssp             CEEEECCCC------SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred             EEEEEcCCC------CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence            888876521      116899999999999999876332100     0                          001123


Q ss_pred             EEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe
Q 020454          156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (326)
Q Consensus       156 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~  234 (326)
                      .+...+...|.+++|+|++++|++| .|+.|++||+++.. ....+......  ...+...|++++|+|. ..++|++++
T Consensus       171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~-~~~~l~s~~  246 (447)
T 3dw8_B          171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPAN--MEELTEVITAAEFHPN-SCNTFVYSS  246 (447)
T ss_dssp             EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSS--GGGCCCCEEEEEECSS-CTTEEEEEE
T ss_pred             EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccc--ccccCcceEEEEECCC-CCcEEEEEe
Confidence            3444567889999999999999998 79999999999543 33322111100  1124467999999984 226999999


Q ss_pred             CCCeEEEEeCCCCCC---ceeEEeecCC------------ceEEEEecCCCCeEEEEcCCCcEEEEECCC-CeEEEEEcc
Q 020454          235 NDHQVRLYDTSAQRR---PVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIG  298 (326)
Q Consensus       235 ~dg~v~iwd~~~~~~---~~~~~~~~~~------------~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~  298 (326)
                      .||.|++||+++...   .+..+..+..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.+
T Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~  325 (447)
T 3dw8_B          247 SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV  325 (447)
T ss_dssp             TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred             CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence            999999999997632   1577777765            8999999999999999999 9999999997 888888888


Q ss_pred             eecce---------------EEEEEECCCCCEEEEeccCccC
Q 020454          299 KCSGS---------------IRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       299 ~~~~~---------------v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      | ...               +..++|+|++++|++++.||.+
T Consensus       326 ~-~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v  366 (447)
T 3dw8_B          326 H-EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF  366 (447)
T ss_dssp             C-GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred             c-ccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence            7 532               3349999999999999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.3e-29  Score=216.97  Aligned_cols=247  Identities=10%  Similarity=0.064  Sum_probs=189.7

Q ss_pred             EEEEEeeeCCCCC-eEEEEecCCcEEEEec----cccc------eeeeecccCCC--CCCCCCCCeeeeecccccccccC
Q 020454           54 VLAASIDDSQNDP-LLAVARKNGLTDILNP----LNGD------LRVAISNAGDS--GAQPEDDGIVGLHLFKRQREESS  120 (326)
Q Consensus        54 ~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~----~~~~------~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~~~  120 (326)
                      +.++.+  ++.++ +|++|+.||.|++|++    .+++      ....+......  ....+.+.|.++.+.+       
T Consensus        48 v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------  118 (425)
T 1r5m_A           48 IVSSTW--NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-------  118 (425)
T ss_dssp             CSEEEE--CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-------
T ss_pred             eEEEEE--CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-------
Confidence            334444  34566 8999999999999999    7777      23333221000  0012456899998766       


Q ss_pred             CCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       121 ~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  200 (326)
                       ++..|++++.+|.|++|+...         ..+..+. .+...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       119 -~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (425)
T 1r5m_A          119 -DGNSIVTGVENGELRLWNKTG---------ALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF  187 (425)
T ss_dssp             -TSSEEEEEETTSCEEEEETTS---------CEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             -CCCEEEEEeCCCeEEEEeCCC---------Ceeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence             567899999999999999322         1333333 35678999999999999999999999999999988776655


Q ss_pred             cCCCCC---------------C-------------------------------CCc-CCCCceeeeEEeecCCCcEEEEE
Q 020454          201 KPPPKN---------------S-------------------------------LGI-FTPTWFTSAAFLSIDDHRKFVAG  233 (326)
Q Consensus       201 ~~~~~~---------------~-------------------------------~~~-~~~~~v~~~~~~p~~~~~~l~~~  233 (326)
                      ..+...               .                               ..+ .+...|++++|+|  ++++|+++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~  265 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND--TNKLLLSA  265 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET--TTTEEEEE
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC--CCCEEEEE
Confidence            443322               0                               001 2456789999998  45699999


Q ss_pred             eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       234 ~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      +.|+.|++||++.. +++..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..| ...|.+++|+|++
T Consensus       266 ~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~  342 (425)
T 1r5m_A          266 SDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDG  342 (425)
T ss_dssp             ETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTS
T ss_pred             cCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCC
Confidence            99999999999976 5678888899999999999999 9999999999999999999999999988 9999999999999


Q ss_pred             CEEEEeccCccC
Q 020454          314 PIIASCGFLEAA  325 (326)
Q Consensus       314 ~~l~s~s~D~~~  325 (326)
                      ++|++++.||.+
T Consensus       343 ~~l~~~~~dg~i  354 (425)
T 1r5m_A          343 QKYAVAFMDGQV  354 (425)
T ss_dssp             SEEEEEETTSCE
T ss_pred             CEEEEEECCCeE
Confidence            999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.6e-29  Score=236.53  Aligned_cols=293  Identities=9%  Similarity=0.045  Sum_probs=196.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCC----------------CCCceEEEEEeeeCCCCCeEEEEecCCcEE
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP----------------HSSNCVLAASIDDSQNDPLLAVARKNGLTD   78 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~   78 (326)
                      ..+++|+.+|.| +||+..+     +....+..+                .+...+.+++|.  +++.+|++|+.||+|+
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs--pdg~~lasgs~Dg~i~  236 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVEN-----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH--PNSLHIITIHEDNSLV  236 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTT-----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--TTSSEEEEEETTCCEE
T ss_pred             CEEEEEeCCCcE-EEECCCC-----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--CCCCEEEEEECCCeEE
Confidence            478999999999 9999876     333333321                112445566664  4577999999999999


Q ss_pred             EEeccccceeee--eccc--CCCC--C-C---CCCCCeeeeecccccccccCCCC-ceEEEEecC-----CcEEEEEccc
Q 020454           79 ILNPLNGDLRVA--ISNA--GDSG--A-Q---PEDDGIVGLHLFKRQREESSSRS-RTLLTCTTK-----GKASMRSIEV  142 (326)
Q Consensus        79 i~~~~~~~~~~~--~~~~--~~~~--~-~---~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~-----g~v~i~~~~~  142 (326)
                      +||+.+++.+..  +...  +.+.  . .   .+..+|.++.+.....    +++ ..+++++.+     ..+.+|++..
T Consensus       237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~----pd~~~ll~sg~~~~~~~~~~v~~~~~~~  312 (902)
T 2oaj_A          237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN----PEYTSLLISHKSISRGDNQSLTMIDLGY  312 (902)
T ss_dssp             EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS----TTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred             EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC----CCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence            999988876543  2110  0000  0 0   1234677777643211    011 234555444     2566666320


Q ss_pred             c-----------------------------c-----------------------cccccccceEEEEEccCC--------
Q 020454          143 T-----------------------------K-----------------------VSAESSCSTVKSWNVCAS--------  162 (326)
Q Consensus       143 ~-----------------------------~-----------------------~~~~~~~~~~~~~~~~~~--------  162 (326)
                      .                             .                       ......++.+++|++..+        
T Consensus       313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~  392 (902)
T 2oaj_A          313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL  392 (902)
T ss_dssp             CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred             CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence            0                             0                       011122466777775322        


Q ss_pred             ---------CceEE----------------------------------EEEcCCCCEEEEecCCCeEEEEECCCceee--
Q 020454          163 ---------GTIAF----------------------------------SKVDISEKFSLFGGKGVEVNVWDLDKCEKI--  197 (326)
Q Consensus       163 ---------~~v~~----------------------------------~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--  197 (326)
                               ..|.+                                  ++|+|++++|++|+.|++|++||+.++...  
T Consensus       393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~  472 (902)
T 2oaj_A          393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN  472 (902)
T ss_dssp             SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred             CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence                     22333                                  345688999999999999999999876421  


Q ss_pred             --eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---------------------------
Q 020454          198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------  248 (326)
Q Consensus       198 --~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---------------------------  248 (326)
                        +... . ...+...+...|.+++|+|  ++++||+|+.||+|+|||+.+.+                           
T Consensus       473 ~~~~~~-l-~~~~~~~h~~~V~svafsp--dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (902)
T 2oaj_A          473 ASFEVN-L-SRTLNKAKELAVDKISFAA--ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG  548 (902)
T ss_dssp             BCEEEE-H-HHHTTCSSSCCEEEEEEET--TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC
T ss_pred             ceEEee-c-hhhcCCCCCCceeEEEecC--CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc
Confidence              1100 0 0000012446799999998  67799999999999999987542                           


Q ss_pred             -----------------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-----Ec-ceecceEE
Q 020454          249 -----------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-----FI-GKCSGSIR  305 (326)
Q Consensus       249 -----------------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-----~~-~~~~~~v~  305 (326)
                                       +++..+..|...|++++|+|+| +||+|+.|++|++||++++..++.     +. +| .+.|+
T Consensus       549 ~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~  626 (902)
T 2oaj_A          549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVT  626 (902)
T ss_dssp             SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEE
T ss_pred             ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceE
Confidence                             1356677899999999999999 999999999999999998877642     22 67 88999


Q ss_pred             EEEEC-----CCC---CEEEEeccCccC
Q 020454          306 SIARH-----PTL---PIIASCGFLEAA  325 (326)
Q Consensus       306 ~l~~~-----p~~---~~l~s~s~D~~~  325 (326)
                      +|+|+     ||+   ++|++++.|+++
T Consensus       627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv  654 (902)
T 2oaj_A          627 CIEFVIMEYGDDGYSSILMVCGTDMGEV  654 (902)
T ss_dssp             EEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred             EEEEEEEecCCCCCcceEEEEEecCCcE
Confidence            99999     885   899999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.9e-29  Score=213.35  Aligned_cols=242  Identities=15%  Similarity=0.170  Sum_probs=194.4

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+.++++.  +.+++|++|+.||.|++||+.+++.+..+.        .+...|.++.+.+        ++..++++
T Consensus        31 h~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~l~s~   92 (369)
T 3zwl_B           31 HERPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNGERLGTLD--------GHTGTIWSIDVDC--------FTKYCVTG   92 (369)
T ss_dssp             CSSCEEEEEEC--TTSCEEEEEESSSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECT--------TSSEEEEE
T ss_pred             eeceEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------hcCCcEEEEEEcC--------CCCEEEEE
Confidence            34445555554  456699999999999999999888777665        5567899998765        56789999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC-----CeEEEEECCCceeeeeecCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPP  204 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~  204 (326)
                      +.||.|++|++....        .+..+.  +...+.+++|+|++++|++++.+     +.|++||+.............
T Consensus        93 ~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~  162 (369)
T 3zwl_B           93 SADYSIKLWDVSNGQ--------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS  162 (369)
T ss_dssp             ETTTEEEEEETTTCC--------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred             eCCCeEEEEECCCCc--------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence            999999999987543        444444  56789999999999999999999     999999998754322211111


Q ss_pred             CCCC--CcCCC--CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454          205 KNSL--GIFTP--TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (326)
Q Consensus       205 ~~~~--~~~~~--~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg  280 (326)
                      ....  ...+.  ..+.+++|+|  ++++|++++.||.|++||+++...++..+..|...|.+++|+|++++|++++.||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  240 (369)
T 3zwl_B          163 EEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT  240 (369)
T ss_dssp             SSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc
Confidence            0000  00111  2689999998  4569999999999999999984467888888999999999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       281 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .|++||+++++.+..+. + ...+..++|+|+++++++++.|+
T Consensus       241 ~i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          241 NSFLVDVSTLQVLKKYE-T-DCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             EEEEEETTTCCEEEEEE-C-SSCEEEEEECSSSSEEEEEECCC
T ss_pred             eEEEEECCCCceeeeec-C-CCCceeEEecCCCceEEEeecCC
Confidence            99999999999998888 4 78999999999999999999887

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=4.6e-29  Score=208.95  Aligned_cols=268  Identities=10%  Similarity=0.078  Sum_probs=191.4

Q ss_pred             eecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeee--ecccCC
Q 020454           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA--ISNAGD   96 (326)
Q Consensus        19 ~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~--~~~~~~   96 (326)
                      +|.+.|...++-.... .+...+..++.  .+...|.+++|.++ .+++|++|+.||+|+|||+.+.+....  ...+  
T Consensus         9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~--GH~~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l--   82 (340)
T 4aow_A            9 SGVDLGTENLYFQSMM-TEQMTLRGTLK--GHNGWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRAL--   82 (340)
T ss_dssp             ------------------CEEEEEEEEC--CCSSCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE--
T ss_pred             cccCCCCccEEEEEcc-CCceEEEEEEC--CccCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEE--
Confidence            4555565443322211 12223333443  45556666666432 245899999999999999976543221  1111  


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (326)
                         ..|...|.++.+.+        ++..+++++.|+.+++|+.....        .... .......+..+.+++++++
T Consensus        83 ---~~h~~~V~~~~~s~--------dg~~l~s~~~d~~i~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~  142 (340)
T 4aow_A           83 ---RGHSHFVSDVVISS--------DGQFALSGSWDGTLRLWDLTTGT--------TTRR-FVGHTKDVLSVAFSSDNRQ  142 (340)
T ss_dssp             ---CCCSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTTE--------EEEE-EECCSSCEEEEEECTTSSC
T ss_pred             ---eCCCCCEEEEEECC--------CCCEEEEEcccccceEEeecccc--------eeee-ecCCCCceeEEEEeecCcc
Confidence               25668899998765        66789999999999999976543        2222 2234567888899999999


Q ss_pred             EEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          177 SLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       177 l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                      |++|+.|+.+++||+........ ...         +...+..++|++.....++++++.|+.|++||+++. +.+..+.
T Consensus       143 l~s~s~d~~~~~~d~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~  212 (340)
T 4aow_A          143 IVSGSRDKTIKLWNTLGVCKYTVQDES---------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHI  212 (340)
T ss_dssp             EEEEETTSCEEEECTTSCEEEEECSSS---------CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEEC
T ss_pred             ceeecCCCeEEEEEeCCCceEEEEecc---------ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEec
Confidence            99999999999999986554332 222         235688899988766668899999999999999987 6678888


Q ss_pred             ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       256 ~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .|..+|++++|+|++++|++|+.||.|++||+++.+.+..+..  ...|.++.|+|++.++ +++.|+.+
T Consensus       213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~d~~i  279 (340)
T 4aow_A          213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWL-CAATGPSI  279 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--SSCEEEEEECSSSSEE-EEEETTEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC--CceEEeeecCCCCcee-eccCCCEE
Confidence            9999999999999999999999999999999999999988885  5689999999987654 56667754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.2e-29  Score=212.82  Aligned_cols=256  Identities=9%  Similarity=0.019  Sum_probs=186.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce-------
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-------   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-------   87 (326)
                      -.|++++.||.|++|++..+ ....+....+.  .+...+.+++|....++.+|++|+.||.|++||+.+++.       
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  100 (351)
T 3f3f_A           24 RHVATCSSDQHIKVFKLDKD-TSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW  100 (351)
T ss_dssp             SEEEEEETTSEEEEEEECSS-SCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred             CEEEEeeCCCeEEEEECCCC-CCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence            56999999999999999876 33333433443  344456666665433466899999999999999987632       


Q ss_pred             --eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc-cceEEE---EEccC
Q 020454           88 --RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CSTVKS---WNVCA  161 (326)
Q Consensus        88 --~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~-~~~~~~---~~~~~  161 (326)
                        ...+.        .+...|.++.+.+..      .+..+++++.||.|++||+.......... ...+..   ....+
T Consensus       101 ~~~~~~~--------~~~~~v~~~~~~~~~------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A          101 NKLCTLN--------DSKGSLYSVKFAPAH------LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             EEEEEEC--------CCSSCEEEEEECCGG------GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             ceeeeec--------ccCCceeEEEEcCCC------CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence              22222        556789989876521      16789999999999999987654221110 001111   11134


Q ss_pred             CCceEEEEEcCC---CCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCC--cEEEEEe
Q 020454          162 SGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGT  234 (326)
Q Consensus       162 ~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~~l~~~~  234 (326)
                      ...+.+++|+|+   +.+|++++.|+.+.+|+...++.  +..+..|         ...|++++|+|....  ++|++++
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---------KSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC---------CSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC---------CcceeEEEECCCCCCcceEEEEEc
Confidence            567999999997   89999999999998888877654  4444443         356999999985211  6999999


Q ss_pred             CCCeEEEEeCCCCC---------------------------------------------CceeEEeecCCceEEEEecCC
Q 020454          235 NDHQVRLYDTSAQR---------------------------------------------RPVMSFDFRETPIKAVAEEPD  269 (326)
Q Consensus       235 ~dg~v~iwd~~~~~---------------------------------------------~~~~~~~~~~~~i~~v~~s~~  269 (326)
                      .||.|++||++...                                             +++..+..|...|++++|+|+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            99999999988631                                             234556678899999999999


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          270 SFNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       270 ~~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      +++|++|+.||.|++||+.+++.+..+
T Consensus       318 ~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          318 GTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             SCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             CCEEEEecCCCcEEEEecCcCcchhhe
Confidence            999999999999999999987655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=4.1e-29  Score=232.81  Aligned_cols=236  Identities=16%  Similarity=0.199  Sum_probs=196.4

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ...+.+++|  ++++++|++|+.||.|++||+.+++.+..+.        .+.++|.++.+.+        ++..|++++
T Consensus        13 ~~~v~~i~~--sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~--------~~~~l~~~~   74 (814)
T 3mkq_A           13 SDRVKGIDF--HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--------VTETPVRAGKFIA--------RKNWIIVGS   74 (814)
T ss_dssp             CSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEG--------GGTEEEEEE
T ss_pred             CCceEEEEE--CCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------cCCCcEEEEEEeC--------CCCEEEEEe
Confidence            334445555  4566799999999999999998888777666        4557899999866        567899999


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLG  209 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~  209 (326)
                      .||.|++|++....        .+..+. .+...|.+++|+|++++|++++.|+.|++||++++ .....+..|.     
T Consensus        75 ~dg~i~vw~~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----  140 (814)
T 3mkq_A           75 DDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-----  140 (814)
T ss_dssp             TTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS-----
T ss_pred             CCCeEEEEECCCCc--------EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC-----
Confidence            99999999987543        344443 35678999999999999999999999999999886 4455554443     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC-CceEEEEecC--CCCeEEEEcCCCcEEEEE
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEP--DSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~i~~v~~s~--~~~~l~~g~~dg~v~iwd  286 (326)
                          ..|.+++|+|. ++..|++++.||.|++||++.. .+...+..+. ..+..++|+|  ++.+|++|+.||.|++||
T Consensus       141 ----~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d  214 (814)
T 3mkq_A          141 ----HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (814)
T ss_dssp             ----SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred             ----CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence                56899999983 3559999999999999999876 4455555544 8899999999  899999999999999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++++.+..+.+| ...|.+++|+|++++|++++.||.+
T Consensus       215 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v  252 (814)
T 3mkq_A          215 YQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTL  252 (814)
T ss_dssp             TTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             CCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeE
Confidence            9999999999998 9999999999999999999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=213.67  Aligned_cols=243  Identities=13%  Similarity=0.116  Sum_probs=179.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++++.+|.|+||++...   ..+....+.  .+...+.++.|.....+.+|++|+.||.|++||+.+++....... 
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-   97 (379)
T 3jrp_A           24 KRLATCSSDKTIKIFEVEGE---THKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-   97 (379)
T ss_dssp             SEEEEEETTSCEEEEEEETT---EEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-
T ss_pred             CEEEEEECCCcEEEEecCCC---cceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-
Confidence            57899999999999999843   113333443  334456666665554467999999999999999988763222222 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC--
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--  172 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  172 (326)
                           ..+...|.++.+.+..      .+..+++++.||.|++|++......      ..... ..+...|.+++|+|  
T Consensus        98 -----~~~~~~v~~~~~~~~~------~~~~l~~~~~d~~i~v~d~~~~~~~------~~~~~-~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           98 -----AVHSASVNSVQWAPHE------YGPLLLVASSDGKVSVVEFKENGTT------SPIII-DAHAIGVNSASWAPAT  159 (379)
T ss_dssp             -----CCCSSCEEEEEECCGG------GCSEEEEEETTSEEEEEECCTTSCC------CEEEE-ECCTTCEEEEEECCCC
T ss_pred             -----cCCCcceEEEEeCCCC------CCCEEEEecCCCcEEEEecCCCCce------eeEEe-cCCCCceEEEEEcCcc
Confidence                 1455789999876521      1578999999999999998764311      11122 24567899999999  


Q ss_pred             -----------CCCEEEEecCCCeEEEEECCCcee----eeeecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCC
Q 020454          173 -----------SEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTND  236 (326)
Q Consensus       173 -----------~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~d  236 (326)
                                 ++++|++++.|+.|++||+++++.    ...+..|         ...|++++|+|... +++|++++.|
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h---------~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---------SDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---------SSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc---------cCcEeEEEECCCCCCCCeEEEEeCC
Confidence                       689999999999999999987543    2333333         35699999998410 6799999999


Q ss_pred             CeEEEEeCCCCCCcee----EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          237 HQVRLYDTSAQRRPVM----SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~----~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      |.|++||++....+..    ....+...|++++|+|++++|++++.||.|++|++..+
T Consensus       231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            9999999987532211    12237789999999999999999999999999999843

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=8.9e-30  Score=220.75  Aligned_cols=235  Identities=14%  Similarity=0.156  Sum_probs=177.2

Q ss_pred             ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      ..+.+++|.+. ...+||+|+.||+|+|||+.+++....+..      ..|.+.|.++.+.+.       ++..|++++.
T Consensus       120 ~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------~gH~~~V~~l~f~p~-------~~~~l~s~s~  185 (435)
T 4e54_B          120 RRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------IGAGGSITGLKFNPL-------NTNQFYASSM  185 (435)
T ss_dssp             SCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECC------CSSSCCCCEEEECSS-------CTTEEEEECS
T ss_pred             CCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEc------cCCCCCEEEEEEeCC-------CCCEEEEEeC
Confidence            34556666432 345899999999999999987765444443      267789999997541       3568999999


Q ss_pred             CCcEEEEEccccccccccccceEEEEEcc--CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      ||.|++||++..         .++.+...  ....+.+++++|++++|++|+.|+.|++||++. +.+..+..|      
T Consensus       186 D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h------  249 (435)
T 4e54_B          186 EGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMH------  249 (435)
T ss_dssp             SSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCC------
T ss_pred             CCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecc------
Confidence            999999998643         22233222  233578899999999999999999999999864 344444443      


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                         ...|++++|+|. ...+|++++.|+.|++||++..+.  .+.....|...|++++|+|+|++|++|+.||.|++||+
T Consensus       250 ---~~~v~~v~~~p~-~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          250 ---KKKVTHVALNPC-CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             ---SSCEEEEEECTT-CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred             ---cceEEeeeecCC-CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence               367999999985 344889999999999999986532  12233468889999999999999999999999999999


Q ss_pred             CCCeEEEEEcceecc------eEEEEEECCCCCEEEEecc
Q 020454          288 RTGKLLGCFIGKCSG------SIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       288 ~~~~~~~~~~~~~~~------~v~~l~~~p~~~~l~s~s~  321 (326)
                      ++++....+..| ..      .+....|+|++.++++++.
T Consensus       326 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
T 4e54_B          326 SQWDCPLGLIPH-PHRHFQHLTPIKAAWHPRYNLIVVGRY  364 (435)
T ss_dssp             SSSSSEEEECCC-CCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred             CCCccceEEecc-cccccccceeEEEEEcCCCCEEEEEEc
Confidence            999888777665 32      2345678888887777654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=6.6e-30  Score=216.08  Aligned_cols=249  Identities=11%  Similarity=0.056  Sum_probs=193.1

Q ss_pred             CCCceEEEEEeeeC--CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE
Q 020454           49 HSSNCVLAASIDDS--QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (326)
Q Consensus        49 ~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l  126 (326)
                      .+...+.++.+.+.  ....++++++.++.|++||+.+++.+..+..+...   .+...|.++.+.+...    ..+..+
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~----~~~~~l   88 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSN----TSHPLL   88 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTT----TCCEEE
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCC----CCCCEE
Confidence            34555666666643  23456888888889999999888776666543221   3557899888765211    014589


Q ss_pred             EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (326)
Q Consensus       127 ~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  205 (326)
                      ++++.||.|++|++....        .+..+. .+...|.+++|+| ++++|++|+.|+.|++||+++++.+..+.... 
T Consensus        89 ~~~~~dg~i~v~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-  158 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQ--------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-  158 (366)
T ss_dssp             EEEETTCEEEEECTTTCC--------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-
T ss_pred             EEecCCCEEEEEEchhce--------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-
Confidence            999999999999987543        344444 3578999999999 89999999999999999999998877763211 


Q ss_pred             CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE----------------------------Eeec
Q 020454          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS----------------------------FDFR  257 (326)
Q Consensus       206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----------------------------~~~~  257 (326)
                           .+...|.+++|+|  ++++|++++.||.|++||+++. +....                            ...|
T Consensus       159 -----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          159 -----GHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             -----SCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             -----cccCceeEEEECC--CCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence                 1235799999998  5669999999999999999865 22222                            2238


Q ss_pred             CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe--------------EEEEEcceecceEEEEEECCC--CCEEEEecc
Q 020454          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------LLGCFIGKCSGSIRSIARHPT--LPIIASCGF  321 (326)
Q Consensus       258 ~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~v~~l~~~p~--~~~l~s~s~  321 (326)
                      ...|.+++|+  +++|++++.||.|++||+++++              .+..+.+| ...|++++|+|+  +++|++++.
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEECT
T ss_pred             cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEEec
Confidence            8899999998  7799999999999999998763              47788888 999999999999  999999999


Q ss_pred             CccC
Q 020454          322 LEAA  325 (326)
Q Consensus       322 D~~~  325 (326)
                      ||.+
T Consensus       308 dg~i  311 (366)
T 3k26_A          308 VGKL  311 (366)
T ss_dssp             TSCE
T ss_pred             CCcE
Confidence            9975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.8e-28  Score=199.46  Aligned_cols=266  Identities=11%  Similarity=0.029  Sum_probs=171.4

Q ss_pred             CCcceeeeccCCCCCceEEEEE-eeeCCC--CCeEEEEecCCcEEEEecccc---ceeeeecccCCCCCCCCCCCeeeee
Q 020454           37 GVPKVVERWGDPHSSNCVLAAS-IDDSQN--DPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLH  110 (326)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~l~~g~~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~  110 (326)
                      +...++.++.++.. .+.+.+| .-|...  ....++......|++|+..++   +.+...+.        ++.+|..+.
T Consensus        23 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~--------~~~~v~~~~   93 (356)
T 2w18_A           23 GNLQLVSELKNPSG-SCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF--------AEVPVLQIV   93 (356)
T ss_dssp             -CEEEEEEECCCCS-SCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC--------CSSCEEEEC
T ss_pred             ceeeeeehhcCCCC-CeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEec--------cCceeEEEE
Confidence            44455666666633 3333333 222222  223444555689999999887   44444442        223333333


Q ss_pred             ccc----------------ccc-cccCCC----CceEEEEecCCcEEEEEcccccccccc---ccceEEEEEccCCCc--
Q 020454          111 LFK----------------RQR-EESSSR----SRTLLTCTTKGKASMRSIEVTKVSAES---SCSTVKSWNVCASGT--  164 (326)
Q Consensus       111 ~~~----------------~~~-~~~~~~----~~~l~~~~~~g~v~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~--  164 (326)
                      +.+                .-+ ...+++    ...+++++.  .+.+|++........+   .++.+++|++...+.  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~  171 (356)
T 2w18_A           94 PVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK  171 (356)
T ss_dssp             CCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE
T ss_pred             EcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee
Confidence            322                000 111223    445566553  3778888665543332   588999999855332  


Q ss_pred             ---------eEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE--
Q 020454          165 ---------IAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF--  230 (326)
Q Consensus       165 ---------v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l--  230 (326)
                               +..++|++   ++.+|++|+.|++|+|||+++++.+..+..+....      ..+.+++|+|  ++.++  
T Consensus       172 ~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v------~~v~~vafSp--dG~~lvs  243 (356)
T 2w18_A          172 ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ------ASVCHKAYSE--MGLLFIV  243 (356)
T ss_dssp             EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CCCEEEEEEE--TTEEEEE
T ss_pred             eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce------eeeEEEEECC--CCCEEEE
Confidence                     44677777   67999999999999999999999988887543221      3577888998  45554  


Q ss_pred             ----------EEEeCCCeEEEEeCCCCCCceeEE-----eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454          231 ----------VAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (326)
Q Consensus       231 ----------~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~  295 (326)
                                ++|+.|++|++||+.++ +.+..+     .+|...+.+..+  ++.++++|+.|++|+|||+++++++++
T Consensus       244 ~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~t  320 (356)
T 2w18_A          244 LSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTAL  320 (356)
T ss_dssp             EC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             eccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence                      66889999999999977 444443     234444444444  478899999999999999999999999


Q ss_pred             EcceecceEE-EEEECCCCCEEEEeccCccC
Q 020454          296 FIGKCSGSIR-SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       296 ~~~~~~~~v~-~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.+| ...+. .++|+|++++|+|||.|+++
T Consensus       321 L~gH-~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          321 LPPV-SDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             ECCC---CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             ecCC-CCCeEEEEEECCCCCEEEEEECCCcE
Confidence            9998 66554 69999999999999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=5.4e-29  Score=209.86  Aligned_cols=245  Identities=10%  Similarity=0.073  Sum_probs=178.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEee----eCCCCCeEEEEecCCcEEEEeccccc-eee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID----DSQNDPLLAVARKNGLTDILNPLNGD-LRV   89 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~g~~dg~i~i~~~~~~~-~~~   89 (326)
                      ..+++++.+|.|++|++..+ ..   ....+..  +...+.++.+.    .++++++|++++.||.|++||+.+++ .+.
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~-~~---~~~~~~~--~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAP-EM---PVYSVKG--HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSC-SS---CSEEECC--CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             ceEEEecCCCeEEEEeCCCC-Cc---cEEEEEe--cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence            67999999999999999876 10   2233433  33444455443    35677799999999999999998776 444


Q ss_pred             eecccCCCCCCCCCCCeeeeec---ccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHL---FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~---~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (326)
                      .+....    ......+.++.+   +.       +++..+++++.+|.|++|++....        .  .+...+...|.
T Consensus       155 ~~~~~~----~~~~~~v~~~~~~~~~~-------~~~~~l~~~~~d~~i~i~d~~~~~--------~--~~~~~~~~~v~  213 (357)
T 3i2n_A          155 NMEPVQ----GENKRDCWTVAFGNAYN-------QEERVVCAGYDNGDIKLFDLRNMA--------L--RWETNIKNGVC  213 (357)
T ss_dssp             EECCCT----TSCCCCEEEEEEECCCC--------CCCEEEEEETTSEEEEEETTTTE--------E--EEEEECSSCEE
T ss_pred             eccccC----CCCCCceEEEEEEeccC-------CCCCEEEEEccCCeEEEEECccCc--------e--eeecCCCCceE
Confidence            444211    011346776663   22       156789999999999999987543        1  22234567899


Q ss_pred             EEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEEEE
Q 020454          167 FSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLY  242 (326)
Q Consensus       167 ~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iw  242 (326)
                      +++|+|   ++++|++++.|+.|++||+++++....+....    ...+...|++++|+|  ++. +|++++.||.|++|
T Consensus       214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS----EKAHKSTVWQVRHLP--QNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE----EECCSSCEEEEEEET--TEEEEEEEEETTSEEEEE
T ss_pred             EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec----cCCCcCCEEEEEECC--CCCcEEEEEeCCCcEEEe
Confidence            999999   89999999999999999998876554433000    001235699999998  454 79999999999999


Q ss_pred             eCCCCCC------------------ceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeE
Q 020454          243 DTSAQRR------------------PVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       243 d~~~~~~------------------~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~  292 (326)
                      |++....                  .+..+..|...|++++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus       288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            9875422                  3566778999999999999999998 899999999999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1e-28  Score=215.89  Aligned_cols=227  Identities=11%  Similarity=0.148  Sum_probs=181.1

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +++|++|+.||+|++||+.+++.+..+.        .|.+.|.++.+.+         ++.+++++.||.|++|+++...
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~--------~h~~~V~~l~~~~---------~~~l~s~s~dg~i~vwd~~~~~  194 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAH---------GGILVSGSTDRTVRVWDIKKGC  194 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECS---------TTEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEe--------CCCcCEEEEEEcC---------CCEEEEEeCCCCEEEEECCCCc
Confidence            3489999999999999999988777665        5668999998743         3489999999999999987543


Q ss_pred             cccccccceEEEEEccCCCceEEEEEc--CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCC--------------C
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS--------------L  208 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------~  208 (326)
                              .+..+. .+...|.+++++  +++++|++|+.|+.|++||+++.+............              .
T Consensus       195 --------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          195 --------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             --------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             --------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence                    344443 357789999998  577999999999999999998765432211100000              0


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                      ...+...|.++  ++  +++++++++.|+.|++||+++. +++..+..|...|.+++|+|+++++++|+.||.|++||++
T Consensus       266 ~~~~~~~v~~~--~~--~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          266 LRGHMASVRTV--SG--HGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             ECCCSSCEEEE--EE--ETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             ccCccceEEEE--cC--CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            01122445555  34  3559999999999999999977 6788888999999999999999999999999999999999


Q ss_pred             CCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++++..+.+| ...|.+++|+  +.+|++++.||.+
T Consensus       341 ~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v  374 (464)
T 3v7d_B          341 NGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSI  374 (464)
T ss_dssp             TTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEE
T ss_pred             CCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcE
Confidence            99999999998 9999999997  5799999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-28  Score=212.56  Aligned_cols=232  Identities=8%  Similarity=0.034  Sum_probs=176.4

Q ss_pred             EEEEEeeeCCCCCeE-EEEecCCcEEEEecc--ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           54 VLAASIDDSQNDPLL-AVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      +.++.|  ++.+++| ++|+.||.|++||+.  +++.+..+...      .+...+.++.+.+        ++..|++++
T Consensus       105 v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp--------~~~~l~~~~  168 (450)
T 2vdu_B          105 IRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAE--------DDTTVIIAD  168 (450)
T ss_dssp             EEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECT--------TSSEEEEEE
T ss_pred             eEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcC--------CCCEEEEEe
Confidence            444444  4556675 889999999999998  77776666531      2346788888765        567899999


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC---CCEEEEecCCCeEEEEECCCceeeee-ecCCCCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKN  206 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~  206 (326)
                      .+|.+++|++........    .+..+. .+...|.+++|+|+   +++|++|+.|+.|++||+++++.+.. ...|   
T Consensus       169 ~~g~v~~~~~~~~~~~~~----~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h---  240 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKF----TQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH---  240 (450)
T ss_dssp             TTSEEEEEETTSCCCSSC----CCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC---
T ss_pred             CCCcEEEEecCCcccccc----cceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC---
Confidence            999999999865432110    000111 24578999999999   89999999999999999998877665 3333   


Q ss_pred             CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-------------------------cCCce
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------RETPI  261 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~~i  261 (326)
                            ..+|++++|+   ++++|++++.|+.|++||++++ +.+..+..                         ....+
T Consensus       241 ------~~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          241 ------KHFVSSICCG---KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             ------SSCEEEEEEC---STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             ------CCceEEEEEC---CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence                  3679999998   4569999999999999999987 55666652                         23578


Q ss_pred             EEEEecCCCCeEEEEc-CCCcEEEEEC--CCC---eEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          262 KAVAEEPDSFNIYIGN-GSGDLASVDI--RTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       262 ~~v~~s~~~~~l~~g~-~dg~v~iwd~--~~~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ..++|+|++++|++++ .++.|++|++  .++   +.+..+..|  +.|.+++|+|++.+++.++.
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNK  374 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCT
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecc
Confidence            9999999999999888 8999999999  565   667777764  78999999996544444443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=7.3e-29  Score=211.42  Aligned_cols=237  Identities=14%  Similarity=0.126  Sum_probs=181.3

Q ss_pred             CCceEEEEEeeeCCCC-CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           50 SSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      +...+.++.|..  .+ ++|++|+.||.|++||+.+++....+..      ..+...|.++.+.+.       +...+++
T Consensus        72 h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~-------~~~~l~s  136 (383)
T 3ei3_B           72 FDRRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQF-------NTNQLFV  136 (383)
T ss_dssp             CSSCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETT-------EEEEEEE
T ss_pred             CCCCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCC-------CCCEEEE
Confidence            344555565543  34 6899999999999999988877666543      256689999987541       2368999


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                      ++.|+.|++|++...         .+..+....  ...|.+++|+|++++|++|+.|+.|++||+ +++.+..+..|.  
T Consensus       137 ~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~--  204 (383)
T 3ei3_B          137 SSIRGATTLRDFSGS---------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK--  204 (383)
T ss_dssp             EETTTEEEEEETTSC---------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS--
T ss_pred             EeCCCEEEEEECCCC---------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC--
Confidence            999999999998632         334443322  367999999999999999999999999999 466666666543  


Q ss_pred             CCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEEEEeCCCCC---CceeEEeecCCceEEEEecC-CCCeEEEEcCCCc
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGD  281 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~  281 (326)
                             ..|.+++|+|.  +. +|++++.|+.|++||+++.+   .++..+ .|...|++++|+| ++++|++++.||.
T Consensus       205 -------~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~  274 (383)
T 3ei3_B          205 -------AKVTHAEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNE  274 (383)
T ss_dssp             -------SCEEEEEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred             -------CcEEEEEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence                   56899999984  44 89999999999999998732   334444 6889999999999 9999999999999


Q ss_pred             EEEEECCCCeEEEEEccee------c----------ceEEEEEECCCCCEEEEeccCccC
Q 020454          282 LASVDIRTGKLLGCFIGKC------S----------GSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       282 v~iwd~~~~~~~~~~~~~~------~----------~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |++||+++++.+..+.+|.      .          +.+..++|+|++++  +++.|+.+
T Consensus       275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i  332 (383)
T 3ei3_B          275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI  332 (383)
T ss_dssp             EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE
T ss_pred             EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE
Confidence            9999999988776666541      1          23444666666666  77778764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.8e-29  Score=213.63  Aligned_cols=235  Identities=10%  Similarity=0.048  Sum_probs=166.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeec---cCCCCCceEEEEEeeeCCCCCeEEEEe--cCCcEEEEeccccceee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERW---GDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGDLRV   89 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~~~~~~~   89 (326)
                      .+|+++..++.+|+|++... .+..+.....   ........+..++|  ++++++|++++  .|++|+|||+.+++.+.
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKV-NDQLEFLTSVDFDASTNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETT-TTEEEEEEEECSSCCCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             cEEEEecCCCcEEEEEecCC-CceEEEeeeeceeecCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence            34556678899999999865 2222221111   11122222334444  34566776554  68999999999888766


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  169 (326)
                      .+.         +.+.|.++++.+        ++..+++++ ++.+.+|+......       ........+...|.+++
T Consensus       172 ~~~---------~~~~V~~v~fsp--------dg~~l~s~s-~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~v~  226 (365)
T 4h5i_A          172 EIE---------TRGEVKDLHFST--------DGKVVAYIT-GSSLEVISTVTGSC-------IARKTDFDKNWSLSKIN  226 (365)
T ss_dssp             EEE---------CSSCCCEEEECT--------TSSEEEEEC-SSCEEEEETTTCCE-------EEEECCCCTTEEEEEEE
T ss_pred             EeC---------CCCceEEEEEcc--------CCceEEecc-ceeEEEEEeccCcc-------eeeeecCCCCCCEEEEE
Confidence            654         235788888755        455666666 55666776543321       11222233456799999


Q ss_pred             EcCCCCEEEEecCCC----eEEEEECCCceee----eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          170 VDISEKFSLFGGKGV----EVNVWDLDKCEKI----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       170 ~~~~~~~l~sg~~d~----~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      |+|+++++++++.|+    .+++||+......    ..+..+         ...|++++|+|  ++++||+|+.|++|+|
T Consensus       227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~V~~~~~Sp--dg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR---------FKGITSMDVDM--KGELAVLASNDNSIAL  295 (365)
T ss_dssp             EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS---------CSCEEEEEECT--TSCEEEEEETTSCEEE
T ss_pred             EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC---------CCCeEeEEECC--CCCceEEEcCCCEEEE
Confidence            999999999998887    6888998765432    223332         35699999998  6779999999999999


Q ss_pred             EeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          242 YDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       242 wd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      ||++++ +++..+ .+|..+|++++|+|||++|++|+.|++|+|||+..
T Consensus       296 wd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          296 VKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EECCCC-cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999987 567765 68999999999999999999999999999999964

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=4.2e-28  Score=210.29  Aligned_cols=224  Identities=13%  Similarity=0.188  Sum_probs=185.7

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+.++.+    .+++|++|+.||.|++||+.+++....+.        .|.+.|.++.+          ++..++++
T Consensus       132 ~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~----------~~~~l~sg  189 (435)
T 1p22_A          132 TSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY----------DERVIITG  189 (435)
T ss_dssp             SCCCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEEC----------CSSEEEEE
T ss_pred             CCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------CCCCcEEEEEE----------CCCEEEEE
Confidence            3445556655    45689999999999999999888776665        56688998887          45799999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceee---eeecCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKN  206 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~~~~~~  206 (326)
                      +.||.|++|++....        .+..+. .+...|.+++++  ++++++|+.|+.|++||+++++..   .....|.  
T Consensus       190 ~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--  256 (435)
T 1p22_A          190 SSDSTVRVWDVNTGE--------MLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--  256 (435)
T ss_dssp             ETTSCEEEEESSSCC--------EEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS--
T ss_pred             cCCCeEEEEECCCCc--------EEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC--
Confidence            999999999987543        333333 356789999997  469999999999999999987654   3333332  


Q ss_pred             CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                             ..|.+++|.    ++++++++.||.|++||++++ +++..+..|...|.+++|  +++++++|+.||.|++||
T Consensus       257 -------~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd  322 (435)
T 1p22_A          257 -------AAVNVVDFD----DKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD  322 (435)
T ss_dssp             -------SCEEEEEEE----TTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred             -------CcEEEEEeC----CCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence                   568888883    449999999999999999987 678899999999999998  578999999999999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++++++..+.+| ...|.+++|  ++.+|++|+.||.+
T Consensus       323 ~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i  358 (435)
T 1p22_A          323 IECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKI  358 (435)
T ss_dssp             TTTCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             CCCCCEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcE
Confidence            9999999999998 999999999  77899999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-29  Score=232.78  Aligned_cols=243  Identities=13%  Similarity=0.088  Sum_probs=187.1

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~  127 (326)
                      +...+.++.|.  +.+++|++|+.||.|++||+..+  +....+.        .|.++|.++.+.+..      ++..++
T Consensus         8 H~~~V~~l~~s--~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--------~h~~~V~~l~~s~~~------~~~~l~   71 (753)
T 3jro_A            8 HNELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------GHEGPVWRVDWAHPK------FGTILA   71 (753)
T ss_dssp             CCCCEEEECCC--SSSCCEEEEETTTEEEEEEEETTEEEEEEEEC--------CCSSCEEEEEECCTT------SCSEEE
T ss_pred             CcceeEEEEEC--CCCCeEEEEECCCcEEEEecCCCCCccceecc--------CCcCceEEEEecCCC------CCCEEE
Confidence            34445555554  44568999999999999999733  3333333        566899999875521      267899


Q ss_pred             EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCcee--eeeecCC
Q 020454          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPP  203 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~  203 (326)
                      +++.||.|++|++.....      ..+... ..+...|.+++|+|+  ++++++|+.|+.|++||++++..  ...... 
T Consensus        72 s~s~Dg~I~vwd~~~~~~------~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~-  143 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-  143 (753)
T ss_dssp             EEETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-
T ss_pred             EEeCCCeEEEEECCCCcc------cccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-
Confidence            999999999999875321      122222 345778999999999  99999999999999999987633  222333 


Q ss_pred             CCCCCCcCCCCceeeeEEeecC-----------CCcEEEEEeCCCeEEEEeCCCCCC---ceeEEeecCCceEEEEecCC
Q 020454          204 PKNSLGIFTPTWFTSAAFLSID-----------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD  269 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~-----------~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~i~~v~~s~~  269 (326)
                              +...|++++|+|..           ++.++++++.||.|++||++....   +...+..|...|++++|+|+
T Consensus       144 --------~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          144 --------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             --------CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             --------CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence                    33568999999841           355899999999999999987632   34566788999999999999


Q ss_pred             ---CCeEEEEcCCCcEEEEECCCCe-----EEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          270 ---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       270 ---~~~l~~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                         +++|++|+.||.|++||+++++     .+.....| .+.|++++|+|++++|++++.||.+
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I  278 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKV  278 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCE
T ss_pred             CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEE
Confidence               8999999999999999999864     23333456 8899999999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.1e-28  Score=208.87  Aligned_cols=219  Identities=15%  Similarity=0.124  Sum_probs=181.0

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      .+++++.||.|++||+.+++....+..       .+...|.++.+.+        ++..+++++.||.|++|++....  
T Consensus       105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~--------~~~~l~~~~~dg~i~iwd~~~~~--  167 (401)
T 4aez_A          105 NVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSH--------DGSFLSVGLGNGLVDIYDVESQT--  167 (401)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECT--------TSSEEEEEETTSCEEEEETTTCC--
T ss_pred             CEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECC--------CCCEEEEECCCCeEEEEECcCCe--
Confidence            588899999999999999887766654       4567899999766        56789999999999999986543  


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  225 (326)
                            .++.+. .+...|.+++|+  +++|++|+.|+.|++||++. ...+..+..|.         ..|.+++|+|  
T Consensus       168 ------~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~--  227 (401)
T 4aez_A          168 ------KLRTMA-GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS---------SEVCGLAWRS--  227 (401)
T ss_dssp             ------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEEECT--
T ss_pred             ------EEEEec-CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCC---------CCeeEEEEcC--
Confidence                  344444 457789999994  68999999999999999984 45555555543         5689999998  


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe-EEEEc--CCCcEEEEECCCCeEEEEEcceecc
Q 020454          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN-IYIGN--GSGDLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~-l~~g~--~dg~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                      ++++|++++.|+.|++||+++. .++..+..|...|.+++|+|++.. +++|+  .|+.|++||+++++++..+. + ..
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~-~~  304 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A-GS  304 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-C-SS
T ss_pred             CCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-C-CC
Confidence            5669999999999999999976 677888889999999999998754 45654  79999999999999998887 3 67


Q ss_pred             eEEEEEECCCCCEEEEe--ccCccC
Q 020454          303 SIRSIARHPTLPIIASC--GFLEAA  325 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~--s~D~~~  325 (326)
                      .|.+++|+|++++|+++  +.||.+
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg~i  329 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDNNL  329 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCEE
T ss_pred             cEEEEEECCCCCeEEEEeecCCCcE
Confidence            89999999999999994  478764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-28  Score=201.49  Aligned_cols=238  Identities=14%  Similarity=0.188  Sum_probs=187.8

Q ss_pred             eeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccC
Q 020454           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (326)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  120 (326)
                      +...+..  +...+.++.+   +.+++|++|+.||.|++||+.+++....+.        .+...+.++.+.+       
T Consensus        10 ~~~~l~~--h~~~v~~~~~---~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~-------   69 (313)
T 3odt_A           10 LSATLKG--HDQDVRDVVA---VDDSKVASVSRDGTVRLWSKDDQWLGTVVY--------TGQGFLNSVCYDS-------   69 (313)
T ss_dssp             EEEEECC--CSSCEEEEEE---EETTEEEEEETTSEEEEEEESSSEEEEEEE--------ECSSCEEEEEEET-------
T ss_pred             HHHHhhC--CCCCcEEEEe---cCCCEEEEEEcCCcEEEEECCCCEEEEEee--------cCCccEEEEEECC-------
Confidence            3334443  3444555555   234579999999999999998877666655        4457899898766       


Q ss_pred             CCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       121 ~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  200 (326)
                       ++..+++++.||.+++|++.....     ...+..+ ..+...|.++.+  ++++|++++.|+.|++||  .++....+
T Consensus        70 -~~~~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~  138 (313)
T 3odt_A           70 -EKELLLFGGKDTMINGVPLFATSG-----EDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL  138 (313)
T ss_dssp             -TTTEEEEEETTSCEEEEETTCCTT-----SCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred             -CCCEEEEecCCCeEEEEEeeecCC-----CCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence             667999999999999999875331     1122233 235678999999  578999999999999999  55555555


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCC
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGS  279 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~d  279 (326)
                      ..+.         ..+.++.|.|. +++++++++.|+.|++||..   .....+.. +...+.+++|+|++. +++++.|
T Consensus       139 ~~~~---------~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          139 QAHN---------ASVWDAKVVSF-SENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             ECCS---------SCEEEEEEEET-TTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred             ccCC---------CceeEEEEccC-CCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence            5543         56889999985 45599999999999999943   34666666 888999999999998 9999999


Q ss_pred             CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |.|++||+++++++..+.+| .+.|++++|+|++ .|++++.||.+
T Consensus       205 g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v  248 (313)
T 3odt_A          205 GLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTV  248 (313)
T ss_dssp             SEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEE
T ss_pred             CeEEEEECCchhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEE
Confidence            99999999999999999998 9999999999999 68899999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=4.2e-28  Score=207.99  Aligned_cols=257  Identities=9%  Similarity=0.036  Sum_probs=180.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeee----c---cCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVER----W---GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~   87 (326)
                      -.+++++.+|.|++|++..+ .........    .   ....+...+.++.|... .+.+|++++.||.|++||+.+++.
T Consensus        57 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~  134 (408)
T 4a11_B           57 RYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQT  134 (408)
T ss_dssp             CEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEE
T ss_pred             CEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCcc
Confidence            67899999999999999876 221111100    0   00124556666666432 445799999999999999998887


Q ss_pred             eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEE
Q 020454           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  167 (326)
                      ...+..         ...+..+.+.+..     .....+++++.+|.|++|++....        .+..+. .+...|.+
T Consensus       135 ~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~v~~  191 (408)
T 4a11_B          135 ADVFNF---------EETVYSHHMSPVS-----TKHCLVAVGTRGPKVQLCDLKSGS--------CSHILQ-GHRQEILA  191 (408)
T ss_dssp             EEEEEC---------SSCEEEEEECSSC-----SSCCEEEEEESSSSEEEEESSSSC--------CCEEEC-CCCSCEEE
T ss_pred             ceeccC---------CCceeeeEeecCC-----CCCcEEEEEcCCCeEEEEeCCCcc--------eeeeec-CCCCcEEE
Confidence            666553         1456666654422     134589999999999999987543        233333 35678999


Q ss_pred             EEEcCCCC-EEEEecCCCeEEEEECCCce-eeeeecCCCCC------CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454          168 SKVDISEK-FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKN------SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (326)
Q Consensus       168 ~~~~~~~~-~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v  239 (326)
                      ++|+|+++ +|++|+.|+.|++||++++. .+..+..+...      .....+...|++++|+|  ++++|++++.||.|
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i  269 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS--DGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT--TSSEEEEEETTSCE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC--CCCEEEEecCCCeE
Confidence            99999997 58999999999999998765 33333222111      11123456899999998  56699999999999


Q ss_pred             EEEeCCCCC----------------------------------------------CceeEEeecCCceEEEEecCCCCeE
Q 020454          240 RLYDTSAQR----------------------------------------------RPVMSFDFRETPIKAVAEEPDSFNI  273 (326)
Q Consensus       240 ~iwd~~~~~----------------------------------------------~~~~~~~~~~~~i~~v~~s~~~~~l  273 (326)
                      ++||+++.+                                              +++..+..|...|++++|+|++++|
T Consensus       270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  349 (408)
T 4a11_B          270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL  349 (408)
T ss_dssp             EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence            999987542                                              2344556788899999999999999


Q ss_pred             EEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          274 YIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       274 ~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      ++|+.||.|++||+++++++.....
T Consensus       350 ~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          350 YSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             EEEETTSCEEEEEECC---------
T ss_pred             EEECCCCeEEEEeCCCCCccCCCCc
Confidence            9999999999999999888765543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.5e-27  Score=207.35  Aligned_cols=222  Identities=14%  Similarity=0.231  Sum_probs=187.2

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +++|++|+.||+|++||+.+++.+..+.        .|.+.|.++.+          .++.+++++.||.|++|++....
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~----------~~~~l~s~~~dg~i~vwd~~~~~  190 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQM----------RDNIIISGSTDRTLKVWNAETGE  190 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEE----------ETTEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEc--------CCCCCEEEEEe----------cCCEEEEEeCCCeEEEEECCcCc
Confidence            4589999999999999999888776655        56688988886          34689999999999999987532


Q ss_pred             c---------------------ccccccceEEEEEccCC----------CceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454          145 V---------------------SAESSCSTVKSWNVCAS----------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK  193 (326)
Q Consensus       145 ~---------------------~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~  193 (326)
                      .                     +++..++.+++|+....          ..|.++++  +++++++|+.|+.|++||+++
T Consensus       191 ~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~  268 (445)
T 2ovr_B          191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET  268 (445)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG
T ss_pred             EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC
Confidence            2                     44567889999997643          34777777  678899999999999999999


Q ss_pred             ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE
Q 020454          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI  273 (326)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l  273 (326)
                      ++.+..+..+.         ..|.++.|    ++.++++++.|+.|++||++++ +++..+..|...+.++.+  +++++
T Consensus       269 ~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l  332 (445)
T 2ovr_B          269 ETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMEL--KDNIL  332 (445)
T ss_dssp             TEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEE--ETTEE
T ss_pred             CcEeEEecCCC---------CceEEEEE----CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEE--eCCEE
Confidence            98888876654         45788888    4559999999999999999987 678888889889988877  56799


Q ss_pred             EEEcCCCcEEEEECCCCeEEEEEcc---eecceEEEEEECCCCCEEEEeccCccC
Q 020454          274 YIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       274 ~~g~~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++|+.||.|++||+++++.+..+.+   | ...|.+++|+  +++|++++.||.+
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v  384 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTV  384 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeE
Confidence            9999999999999999999999986   6 8899999996  5799999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1.2e-27  Score=216.03  Aligned_cols=269  Identities=11%  Similarity=-0.010  Sum_probs=205.4

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCce-EEEEEeeeCCCCCeEEEEecCCcEEEEecccc--------c
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC-VLAASIDDSQNDPLLAVARKNGLTDILNPLNG--------D   86 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~--------~   86 (326)
                      .+++++ +|.|++|++.++ ....+....+..  +... +.++.+.+..++++|++|+.||.|++||+.++        +
T Consensus        32 ~l~~~~-~~~v~v~~~~~~-~~~~~~~~~~~~--h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~  107 (615)
T 1pgu_A           32 AIAYPC-GKSAFVRCLDDG-DSKVPPVVQFTG--HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN  107 (615)
T ss_dssp             EEEEEE-TTEEEEEECCSS-CCSSCSEEEECT--TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEec-CCeEEEEECCCC-CCccccceEEec--CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc
Confidence            345554 889999999854 111123333433  3344 55666654225669999999999999999755        3


Q ss_pred             eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC----CcEEEEEccccccccccccceEEEEEccCC
Q 020454           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      .+..+.        .+..+|.++.+.+        ++..+++++.+    +.|.+|+...          .+..+. .+.
T Consensus       108 ~~~~~~--------~~~~~v~~~~~s~--------~~~~l~~~~~~~~~~~~v~~~d~~~----------~~~~~~-~~~  160 (615)
T 1pgu_A          108 VKSEFQ--------VLAGPISDISWDF--------EGRRLCVVGEGRDNFGVFISWDSGN----------SLGEVS-GHS  160 (615)
T ss_dssp             EEEEEE--------CCSSCEEEEEECT--------TSSEEEEEECCSSCSEEEEETTTCC----------EEEECC-SCS
T ss_pred             ccchhh--------cccccEEEEEEeC--------CCCEEEEeccCCCCccEEEEEECCC----------cceeee-cCC
Confidence            333333        4557899998765        56788888887    6788887221          233333 456


Q ss_pred             CceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       163 ~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      ..|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..+...      ...|++++|+|. ++++|++++.|+.|++
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ------GSFVRDVEFSPD-SGEFVITVGSDRKISC  233 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT------TCCEEEEEECST-TCCEEEEEETTCCEEE
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC------CceEEEEEECCC-CCCEEEEEeCCCeEEE
Confidence            7899999999997 8999999999999999999988887765421      016899999983 1669999999999999


Q ss_pred             EeCCCCCCceeEE-e---ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce---ecceEEEEEECCCCC
Q 020454          242 YDTSAQRRPVMSF-D---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLP  314 (326)
Q Consensus       242 wd~~~~~~~~~~~-~---~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~~p~~~  314 (326)
                      ||++++ +.+..+ .   .|...|.+++|+ ++++|++++.||.|++||+++++.+..+..+   ....+.++.|. ++.
T Consensus       234 wd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  310 (615)
T 1pgu_A          234 FDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG  310 (615)
T ss_dssp             EETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT
T ss_pred             EECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC
Confidence            999987 567777 5   788999999999 9999999999999999999999999888764   13678888885 888


Q ss_pred             EEEEeccCccC
Q 020454          315 IIASCGFLEAA  325 (326)
Q Consensus       315 ~l~s~s~D~~~  325 (326)
                      +|++++.||.+
T Consensus       311 ~l~~~~~~g~i  321 (615)
T 1pgu_A          311 RIISLSLDGTL  321 (615)
T ss_dssp             EEEEEETTSCE
T ss_pred             eEEEEECCCCE
Confidence            99999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=8.8e-28  Score=207.29  Aligned_cols=240  Identities=9%  Similarity=0.062  Sum_probs=179.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccccee-eeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~   93 (326)
                      -.|++|+.||.|++||+.++     +....+..  +...+.++++.    +.+|++|+.|+.+++||....... ..+. 
T Consensus       160 ~~lasgs~Dg~v~iWd~~~~-----~~~~~~~~--h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-  227 (420)
T 4gga_A          160 NYLAVGTSSAEVQLWDVQQQ-----KRLRNMTS--HSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLS-  227 (420)
T ss_dssp             SEEEEEETTSCEEEEETTTT-----EEEEEECC--CSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred             CEEEEEECCCeEEEEEcCCC-----cEEEEEeC--CCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEec-
Confidence            56899999999999999987     55555543  33445555553    348999999999999998754432 2222 


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (326)
                             .+...+..+.+.+        .+..+++++.||.+++|+.......    ...+.. ...+...|.+++|+|.
T Consensus       228 -------~h~~~~~~~~~~~--------~g~~l~s~~~D~~v~i~~~~~~~~~----~~~~~~-~~~~~~~V~~~~~~p~  287 (420)
T 4gga_A          228 -------GHSQEVCGLRWAP--------DGRHLASGGNDNLVNVWPSAPGEGG----WVPLQT-FTQHQGAVKAVAWCPW  287 (420)
T ss_dssp             -------CCSSCEEEEEECT--------TSSEEEEEETTSCEEEEESSCCSSC----SCCSEE-ECCCSSCEEEEEECTT
T ss_pred             -------ccccceeeeeecC--------CCCeeeeeeccccceEEeecccccc----ceeeee-ecccCCceeeeeeCCC
Confidence                   4557788777655        6678999999999999998654311    111222 2245678999999997


Q ss_pred             C-CEEEE--ecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--CCCeEEEEeCCCCC
Q 020454          174 E-KFSLF--GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQR  248 (326)
Q Consensus       174 ~-~~l~s--g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--~dg~v~iwd~~~~~  248 (326)
                      + .++++  |+.|++|++||+.+++....+..+          ..+.++.|+|.  ++.+++++  .|+.|++||++++ 
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~----------~~v~~~~~~~~--~~~lv~~sg~~d~~I~iwd~~~~-  354 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH----------SQVCSILWSPH--YKELISGHGFAQNQLVIWKYPTM-  354 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTTEEEEEEECS----------SCEEEEEEETT--TTEEEEEECTTTCCEEEEETTTC-
T ss_pred             cccEEEEEeecCCCEEEEEeCCccccceeeccc----------cceeeeeecCC--CCeEEEEEecCCCEEEEEECCCC-
Confidence            6 56554  568999999999999887776543          34778899984  44666554  7999999999987 


Q ss_pred             CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce
Q 020454          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (326)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~  299 (326)
                      +++.++.+|...|++++|+|+|++|++|+.|++|+|||+....+..+...+
T Consensus       355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~  405 (420)
T 4gga_A          355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE  405 (420)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence            678999999999999999999999999999999999999877666555544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.5e-28  Score=204.75  Aligned_cols=237  Identities=12%  Similarity=0.025  Sum_probs=184.0

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc-eEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLL  127 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~  127 (326)
                      .+...+.++.|..  .+++|++++.||.|++|++.+++........     ..+...|.++.+.+        ++. .++
T Consensus         9 ~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~--------~~~~~l~   73 (342)
T 1yfq_A            9 APKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFID--------NTDLQIY   73 (342)
T ss_dssp             CCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEE--------SSSEEEE
T ss_pred             CCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccceee-----eecCCceEEEEECC--------CCCcEEE
Confidence            3445566666654  3558999999999999999877611111111     14457899898765        567 899


Q ss_pred             EEecCCcEEEEEc-cccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC---------cee
Q 020454          128 TCTTKGKASMRSI-EVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---------CEK  196 (326)
Q Consensus       128 ~~~~~g~v~i~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---------~~~  196 (326)
                      +++.||.|++|++ ....         ...+.. .+...|.+++|+| +++|++++.|+.|++||+++         +++
T Consensus        74 ~~~~dg~i~~wd~~~~~~---------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (342)
T 1yfq_A           74 VGTVQGEILKVDLIGSPS---------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN  143 (342)
T ss_dssp             EEETTSCEEEECSSSSSS---------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred             EEcCCCeEEEEEeccCCc---------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe
Confidence            9999999999998 5432         122221 1577899999999 99999999999999999986         444


Q ss_pred             eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC-CCCce-eEEeecCCceEEEEecC-CCCeE
Q 020454          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPV-MSFDFRETPIKAVAEEP-DSFNI  273 (326)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~-~~~~~-~~~~~~~~~i~~v~~s~-~~~~l  273 (326)
                      +..+.          +...|.+++|+|.    .+++++.|+.|++||++. ..... .....+...+.+++|+| +++++
T Consensus       144 ~~~~~----------~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  209 (342)
T 1yfq_A          144 SNNTK----------VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             SSSSS----------SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred             eeEEe----------eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence            33322          3467899999863    399999999999999997 53322 33445778999999999 99999


Q ss_pred             EEEcCCCcEEEEECCCC------eEEEEEcceecc---------eEEEEEECCCCCEEEEeccCccC
Q 020454          274 YIGNGSGDLASVDIRTG------KLLGCFIGKCSG---------SIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       274 ~~g~~dg~v~iwd~~~~------~~~~~~~~~~~~---------~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++|+.||.|++|+++..      +....+.+| ..         .|.+++|+|++++|++++.||.+
T Consensus       210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  275 (342)
T 1yfq_A          210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             EEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             EEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcCCCCEEEEecCCceE
Confidence            99999999999999887      777888876 55         99999999999999999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.4e-26  Score=196.30  Aligned_cols=258  Identities=14%  Similarity=0.109  Sum_probs=195.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      ..+++++.+|.|++||+.++     ++...+..+..   +.++.+  ++.++++ ++++.|+.|++||+.+++.+..+..
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-----~~~~~~~~~~~---~~~~~~--s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~   72 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-----KVTATIPVGSN---PMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVPA   72 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-----EEEEEEECSSS---EEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCC-----eEEEEeecCCC---cceEEE--CCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence            56889999999999999877     55444443322   334444  4555555 6777999999999998888776653


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                              + ..+.++.+.+        ++..++ ++..++.|++||+....        .+....  ....+.+++|+|
T Consensus        73 --------~-~~v~~~~~sp--------dg~~l~~~~~~~~~v~v~d~~~~~--------~~~~~~--~~~~~~~~~~s~  125 (391)
T 1l0q_A           73 --------G-SSPQGVAVSP--------DGKQVYVTNMASSTLSVIDTTSNT--------VAGTVK--TGKSPLGLALSP  125 (391)
T ss_dssp             --------S-SSEEEEEECT--------TSSEEEEEETTTTEEEEEETTTTE--------EEEEEE--CSSSEEEEEECT
T ss_pred             --------C-CCccceEECC--------CCCEEEEEECCCCEEEEEECCCCe--------EEEEEe--CCCCcceEEECC
Confidence                    1 3778788755        445564 55567999999987543        333333  345789999999


Q ss_pred             CCCEE-EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCCCc
Q 020454          173 SEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       173 ~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~~~  250 (326)
                      ++++| ++++.++.|++||+.+++.+..+..+          ..+..++|+|  +++.+ ++++.++.|++||+++. +.
T Consensus       126 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~~~--dg~~l~~~~~~~~~v~~~d~~~~-~~  192 (391)
T 1l0q_A          126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTN-SV  192 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTT-EE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC----------CCcceEEECC--CCCEEEEEeCCCCEEEEEECCCC-eE
Confidence            99877 78888999999999998887765543          2367889998  44455 67888999999999976 44


Q ss_pred             eeEEeecCCceEEEEecCCCCeEEEEc---CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE-EEeccCccC
Q 020454          251 VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGFLEAA  325 (326)
Q Consensus       251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~s~D~~~  325 (326)
                      +..+. +...+.+++|+|++++|++++   .++.|++||+++++.+..+..| . .+.+++|+|++++| ++++.|+.+
T Consensus       193 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~s~~~d~~v  268 (391)
T 1l0q_A          193 IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-P-DPAGIAVTPDGKKVYVALSFXNTV  268 (391)
T ss_dssp             EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-C-CccEEEEccCCCEEEEEcCCCCEE
Confidence            55554 456889999999999999887   6899999999999999888865 4 57899999999877 677888754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.9e-28  Score=207.69  Aligned_cols=231  Identities=11%  Similarity=0.040  Sum_probs=177.7

Q ss_pred             EEEEecCCcEEEEeccccc-eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           68 LAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      +++++.||.|+||++.+.. ....+..+     ..|.+.|.++.+.+.       ++..+++++.||.|++|++......
T Consensus        50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~p~-------~~~~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKTGRVDKNVPLV-----CGHTAPVLDIAWCPH-------NDNVIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             EBCCSSSCCEEEEETTCCEECCTTCCCB-----CCCSSCEEEEEECTT-------CTTEEEEEETTSEEEEEECCTTCCS
T ss_pred             EEEEcCCCEEEEEECccCCCCCCCCceE-----ecCCCCEEEEEeCCC-------CCCEEEEEeCCCeEEEEEccCCCCc
Confidence            4457889999999985432 21222221     267789999997541       3468999999999999998765321


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeee--cCCCCCCCCcCCCCceeeeEEee
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      . .....+..+. .+...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..|.         ..|++++|+|
T Consensus       118 ~-~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~v~~~~~~~  186 (402)
T 2aq5_A          118 L-PLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP---------DTIYSVDWSR  186 (402)
T ss_dssp             S-CBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC---------SCEEEEEECT
T ss_pred             c-ccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC---------CceEEEEECC
Confidence            1 1112344444 356789999999998 79999999999999999999888777  4433         5689999998


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCCc-eEEEEecCCCCeEEEE---cCCCcEEEEECCCCeE-EEEEc
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETP-IKAVAEEPDSFNIYIG---NGSGDLASVDIRTGKL-LGCFI  297 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~-i~~v~~s~~~~~l~~g---~~dg~v~iwd~~~~~~-~~~~~  297 (326)
                        ++++|++++.|+.|++||++++ +.+..+ ..|... +.+++|+|++++|++|   +.|+.|++||+++++. +....
T Consensus       187 --~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~  263 (402)
T 2aq5_A          187 --DGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE  263 (402)
T ss_dssp             --TSSCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred             --CCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence              5669999999999999999987 566777 567665 8999999999999999   8999999999998654 33333


Q ss_pred             -ceecceEEEEEECCCCCEEE-EeccCccC
Q 020454          298 -GKCSGSIRSIARHPTLPIIA-SCGFLEAA  325 (326)
Q Consensus       298 -~~~~~~v~~l~~~p~~~~l~-s~s~D~~~  325 (326)
                       .| ...|.+++|+|++++|+ +++.||.+
T Consensus       264 ~~~-~~~v~~~~~s~~~~~l~~~g~~dg~i  292 (402)
T 2aq5_A          264 LDT-SSGVLLPFFDPDTNIVYLCGKGDSSI  292 (402)
T ss_dssp             CCC-CSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred             ccC-CCceeEEEEcCCCCEEEEEEcCCCeE
Confidence             34 77899999999999886 45578865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2e-27  Score=200.39  Aligned_cols=253  Identities=8%  Similarity=-0.036  Sum_probs=174.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      -.+++|+++| ++||++.+.     +.......  ....++.+  ..  ..+++ ++|+.|++|++||..+++.+..+..
T Consensus        32 ~~la~g~~~~-~~iw~~~~~-----~~~~~~~~--~~~~~~~~--~~--~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~   99 (355)
T 3vu4_A           32 SCLILSTLKS-FEIYNVHPV-----AHIMSQEM--RHLSKVRM--LH--RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV   99 (355)
T ss_dssp             SEEEEECSSE-EEEEEETTE-----EEEEEEEC--SCCCEEEE--CT--TSSEEEEECSSTTEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcCCE-EEEEecCCc-----ceeeeeec--CCeEEEEE--cC--CCCEEEEEECCccEEEEEECCCCcEEEEEEC
Confidence            3566676666 689998865     33222221  12333333  22  23344 6688889999999998888776652


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc-ccccccccceEEEEEccCCCceEEEEEcC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT-KVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                               ..+|.++.+.+          +.+++ ..++.+++|++... ....     .+..       +...+++++
T Consensus       100 ---------~~~v~~v~~~~----------~~~~~-~~~~~i~i~d~~~~~~~~~-----~~~~-------~~~~~~~s~  147 (355)
T 3vu4_A          100 ---------DAPVKDLFLSR----------EFIVV-SYGDVISVFKFGNPWKRIT-----DDIR-------FGGVCEFSN  147 (355)
T ss_dssp             ---------SSCEEEEEECS----------SEEEE-EETTEEEEEESSTTCCBSS-----CCEE-------EEEEEEEET
T ss_pred             ---------CCceEEEEEcC----------CEEEE-EEcCEEEEEECCCCceeeE-----Eecc-------CCceEEEEc
Confidence                     24788777622          33444 45889999998764 2111     1111       233445555


Q ss_pred             CCCEEEE--ecCCCeEEEEECCCcee----------------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe
Q 020454          173 SEKFSLF--GGKGVEVNVWDLDKCEK----------------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (326)
Q Consensus       173 ~~~~l~s--g~~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~  234 (326)
                        +++++  |+.|+.|++||+++++.                +..+..|         ...|++++|+|  ++++|++++
T Consensus       148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h---------~~~v~~~~~s~--~g~~l~s~s  214 (355)
T 3vu4_A          148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH---------TNPIKMVRLNR--KSDMVATCS  214 (355)
T ss_dssp             --TEEEEEESSCTTCEEEEECCC------------------CCEEECCC---------SSCEEEEEECT--TSSEEEEEE
T ss_pred             --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc---------CCceEEEEECC--CCCEEEEEe
Confidence              56665  68999999999997651                3334443         36799999998  567999999


Q ss_pred             CCCe-EEEEeCCCCCCceeEEe-e-cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE--EE--------------
Q 020454          235 NDHQ-VRLYDTSAQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GC--------------  295 (326)
Q Consensus       235 ~dg~-v~iwd~~~~~~~~~~~~-~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~--~~--------------  295 (326)
                      .|++ |++||++++ +++..+. + |...|++++|+|++++|++++.|+.|++||++.+...  ..              
T Consensus       215 ~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (355)
T 3vu4_A          215 QDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW  293 (355)
T ss_dssp             TTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred             CCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence            9998 999999987 6688887 4 8899999999999999999999999999999865311  11              


Q ss_pred             ------EcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          296 ------FIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       296 ------~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                            +......+...++|+|++.+|++++.||..
T Consensus       294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~  329 (355)
T 3vu4_A          294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI  329 (355)
T ss_dssp             CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred             ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence                  111002234679999999999999999853

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.7e-27  Score=204.55  Aligned_cols=195  Identities=13%  Similarity=0.126  Sum_probs=156.2

Q ss_pred             CCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcc--ccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEE
Q 020454          104 DGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIE--VTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~--~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s  179 (326)
                      +.|.++.+.+        ++..| ++++.||.|++|++.  ...        .++.+.. .+...|.+++|+|++++|++
T Consensus       103 ~~v~~~~~s~--------d~~~l~~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~  166 (450)
T 2vdu_B          103 SYIRNLRLTS--------DESRLIACADSDKSLLVFDVDKTSKN--------VLKLRKRFCFSKRPNAISIAEDDTTVII  166 (450)
T ss_dssp             CCEEEEEECT--------TSSEEEEEEGGGTEEEEEEECSSSSS--------CEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CceEEEEEcC--------CCCEEEEEECCCCeEEEEECcCCCCc--------eeeeeecccCCCCceEEEEcCCCCEEEE
Confidence            4688888755        55665 888899999999987  322        3344332 34578999999999999999


Q ss_pred             ecCCCeEEEEECCCceeee----eecCCCCCCCCcCCCCceeeeEEeec-CCCcEEEEEeCCCeEEEEeCCCCCCceeE-
Q 020454          180 GGKGVEVNVWDLDKCEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRRPVMS-  253 (326)
Q Consensus       180 g~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-  253 (326)
                      |+.++.|++|++.+++...    .+..         +...|++++|+|. ..+++|++++.|+.|++||+++. ..+.. 
T Consensus       167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~  236 (450)
T 2vdu_B          167 ADKFGDVYSIDINSIPEEKFTQEPILG---------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKW  236 (450)
T ss_dssp             EETTSEEEEEETTSCCCSSCCCCCSEE---------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEE
T ss_pred             EeCCCcEEEEecCCcccccccceeeec---------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeee
Confidence            9999999999998766543    2222         3367999999994 12679999999999999999977 45666 


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce------------------------ecceEEEEEE
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------------------CSGSIRSIAR  309 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~------------------------~~~~v~~l~~  309 (326)
                      +..|...|++++|+ ++++|++|+.|+.|++||+++++++..+..+                        ....|.+++|
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            45788999999999 9999999999999999999999998887632                        1356899999


Q ss_pred             CCCCCEEEEec-cCccC
Q 020454          310 HPTLPIIASCG-FLEAA  325 (326)
Q Consensus       310 ~p~~~~l~s~s-~D~~~  325 (326)
                      +|++++|++++ .|+.+
T Consensus       316 ~~~~~~l~~~~~~d~~i  332 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCI  332 (450)
T ss_dssp             CSSSSEEEEEETTCSEE
T ss_pred             eCCCCEEEEEECCCCeE
Confidence            99999999998 77654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=220.90  Aligned_cols=242  Identities=12%  Similarity=0.113  Sum_probs=181.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.+|.|+||++.++ .  .+....+.  .+...+.++.|..+..+++|++|+.||.|++||+.+++....... 
T Consensus        22 ~~latg~~dg~I~vwd~~~~-~--~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-   95 (753)
T 3jro_A           22 KRLATCSSDKTIKIFEVEGE-T--HKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-   95 (753)
T ss_dssp             CCEEEEETTTEEEEEEEETT-E--EEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-
T ss_pred             CeEEEEECCCcEEEEecCCC-C--Cccceecc--CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-
Confidence            46999999999999999843 1  13333443  344556677776665577999999999999999988763222222 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC--
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--  172 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  172 (326)
                           ..+...|.++.+.+..      .+..+++++.||.|++|++......      ..... ..+...|.++.|+|  
T Consensus        96 -----~~h~~~V~~v~~sp~~------~~~~l~sgs~dg~I~vwdl~~~~~~------~~~~~-~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           96 -----AVHSASVNSVQWAPHE------YGPLLLVASSDGKVSVVEFKENGTT------SPIII-DAHAIGVNSASWAPAT  157 (753)
T ss_dssp             -----CCCSSCEEEEEECCGG------GCSEEEEEETTSEEEEEECCSSSCC------CCEEE-ECCSSCEEEEEECCCC
T ss_pred             -----cCCCCCeEEEEECCCC------CCCEEEEEeCCCcEEEEEeecCCCc------ceeEe-ecCCCceEEEEecCcc
Confidence                 1566889999876521      1678999999999999998764311      11122 24567899999999  


Q ss_pred             -----------CCCEEEEecCCCeEEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecCC-CcEEEEEeCC
Q 020454          173 -----------SEKFSLFGGKGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTND  236 (326)
Q Consensus       173 -----------~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~l~~~~~d  236 (326)
                                 ++++|++|+.|+.|++||++++.    ....+..|.         ..|++++|+|... +.+|++++.|
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS---------DWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS---------SCEEEEEECCCCSSSEEEEEEESS
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC---------CcEEEEEeccCCCCCCEEEEEecC
Confidence                       58999999999999999998763    344444433         6699999998410 6799999999


Q ss_pred             CeEEEEeCCCCCC----ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          237 HQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       237 g~v~iwd~~~~~~----~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                      |.|++||++....    .......+...|++++|+|++++|++|+.||.|++||+++
T Consensus       229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999999987522    2233345778999999999999999999999999999884

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1e-26  Score=196.04  Aligned_cols=224  Identities=13%  Similarity=0.074  Sum_probs=162.6

Q ss_pred             CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEE
Q 020454           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTC  129 (326)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~  129 (326)
                      ...+.+++|.  +++++|++|+.+| +++|++.+++.......          ..+..+.+..        ..+.+ +++
T Consensus        19 ~~~V~~v~fs--~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------~~~~~~~~~~--------~~~~~~~~~   77 (355)
T 3vu4_A           19 SNPVTDYEFN--QDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------RHLSKVRMLH--------RTNYVAFVT   77 (355)
T ss_dssp             CCCCCEEEEC--TTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------SCCCEEEECT--------TSSEEEEEC
T ss_pred             CCceEEEEEC--CCCCEEEEEcCCE-EEEEecCCcceeeeeec----------CCeEEEEEcC--------CCCEEEEEE
Confidence            3344455554  4556888888765 78999987665443331          1233333322        33444 677


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCc-eeeeeecCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSL  208 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~~~~~~~  208 (326)
                      +.++.|++||+....        .+..+.  ....|.++.++++.  ++++ .|+.|++||+.++ +.+..+..      
T Consensus        78 ~~d~~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------  138 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQ--------DVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------  138 (355)
T ss_dssp             SSTTEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------
T ss_pred             CCccEEEEEECCCCc--------EEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------
Confidence            888999999976543        344444  35689999998754  3333 4789999999987 55444322      


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCC--------------Cc-eeEEeecCCceEEEEecCCCC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQR--------------RP-VMSFDFRETPIKAVAEEPDSF  271 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~--------------~~-~~~~~~~~~~i~~v~~s~~~~  271 (326)
                            ....+++++    .+++.  ++.||.|++||+++..              .+ +..+..|...|++++|+|+|+
T Consensus       139 ------~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~  208 (355)
T 3vu4_A          139 ------FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD  208 (355)
T ss_dssp             ------EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred             ------CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence                  122345554    25665  6899999999998753              12 678889999999999999999


Q ss_pred             eEEEEcCCCc-EEEEECCCCeEEEEEc-c-eecceEEEEEECCCCCEEEEeccCccC
Q 020454          272 NIYIGNGSGD-LASVDIRTGKLLGCFI-G-KCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       272 ~l~~g~~dg~-v~iwd~~~~~~~~~~~-~-~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +|++|+.||+ |++||+++++++..+. + | .+.|++++|+|++++|++++.|+.+
T Consensus       209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v  264 (355)
T 3vu4_A          209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTL  264 (355)
T ss_dssp             EEEEEETTCSEEEEEETTTCCEEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEE
Confidence            9999999998 9999999999999998 5 7 9999999999999999999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.5e-25  Score=194.03  Aligned_cols=263  Identities=11%  Similarity=0.066  Sum_probs=195.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccC---CCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD---PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      ..+++++.+|.|++||+.++     +.......   ..+...+..+.+  .+.+.++++++.|+.|++||+.+++.+..+
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~  207 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSG-----QTVRLSPPEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATV  207 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTC-----CEEEECCCHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCC-----eEeeecCcccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEE
Confidence            45677788899999999876     33321111   133344555555  345668999999999999999888877666


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  170 (326)
                      .        .+...+.++.+.+        ++..+ ++++.++.|++||+....        .+.  .......+.++++
T Consensus       208 ~--------~~~~~~~~~~~~~--------~~~~l~~~~~~~~~i~~~d~~~~~--------~~~--~~~~~~~~~~~~~  261 (433)
T 3bws_A          208 D--------LTGKWSKILLYDP--------IRDLVYCSNWISEDISVIDRKTKL--------EIR--KTDKIGLPRGLLL  261 (433)
T ss_dssp             E--------CSSSSEEEEEEET--------TTTEEEEEETTTTEEEEEETTTTE--------EEE--ECCCCSEEEEEEE
T ss_pred             c--------CCCCCeeEEEEcC--------CCCEEEEEecCCCcEEEEECCCCc--------EEE--EecCCCCceEEEE
Confidence            5        3335777788654        44556 455589999999976432        222  2334567999999


Q ss_pred             cCCCCEEEEec--------CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          171 DISEKFSLFGG--------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       171 ~~~~~~l~sg~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      +|++++|++++        .|+.|++||+++++.+....          ++..+.+++|+|. ...++++++.++.|++|
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~-g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----------PPGNKRHIVSGNT-ENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----------EEECEEEEEECSS-TTEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----------CCCCcceEEECCC-CCEEEEEecCCCEEEEE
Confidence            99999998887        58899999999887765531          1234778899884 22366777999999999


Q ss_pred             eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC---------------CCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~---------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  307 (326)
                      |+.++ +.+..+. +...+.+++|+|+++++++++.               ||.|++||+.+++.+..+..  ...+.++
T Consensus       331 d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~  406 (433)
T 3bws_A          331 DLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGL  406 (433)
T ss_dssp             ETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEE
T ss_pred             ECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceE
Confidence            99976 4555554 5678999999999999988776               57999999999999988875  4578999


Q ss_pred             EECCCCCEEEEecc-CccC
Q 020454          308 ARHPTLPIIASCGF-LEAA  325 (326)
Q Consensus       308 ~~~p~~~~l~s~s~-D~~~  325 (326)
                      +|+|++++|++++. |+.+
T Consensus       407 ~~s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          407 DVSPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             EECTTSCEEEEEETTTTEE
T ss_pred             EEcCCCCEEEEEECCCCeE
Confidence            99999999988764 7754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.5e-27  Score=202.61  Aligned_cols=247  Identities=11%  Similarity=0.034  Sum_probs=180.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++++.|++|+  |....     +   +.  ..+...+..+++.+.            |.++.|++.+++....+.. 
T Consensus        28 ~~iASas~D~TV~--d~~~~-----~---~l--~gh~~~v~~V~FsPd------------g~~~~~~~~~~~~~~~~~~-   82 (588)
T 2j04_A           28 TLYLTTFPDISIG--QPKYA-----K---DI--NCNSKNLFHVKEFPL------------EFENKLDFELAQQNGLLNS-   82 (588)
T ss_dssp             CEEEECSSSEEEE--EECCC-----S---CC--SSBGGGTEEEEEECC------------CCCCTTTTSCCCSSCSSTT-
T ss_pred             CEEEEEcCCceee--ccccc-----c---ee--cCCCccEEEEEECCC------------CCcceEEEEeCCCceEeec-
Confidence            5788899999999  64332     1   11  245555555555433            2444444443332222221 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC----CCceEEEEE
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKV  170 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~  170 (326)
                            .++..|.++++.+        ++..+++++.||.+++|+.+.          .+.... .+    ...+.+++|
T Consensus        83 ------~~~~~V~~vawSP--------dG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svaf  137 (588)
T 2j04_A           83 ------QPVCYPRVCKPSP--------IDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEW  137 (588)
T ss_dssp             ------SCSCCEEEEEECS--------SSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEE
T ss_pred             ------CCCCcEEEEEECC--------CCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEE
Confidence                  2257899999876        778899999999999999432          222223 22    125999999


Q ss_pred             cCCCCEEEEecCCCeEEEEECCCcee-------eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          171 DISEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      +|+|++||+|+.||+|+|||+.+++.       +..++.+...     |..||.+++|+|  ++  +++++.|++|++||
T Consensus       138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-----h~~~V~sVawSP--dg--Laass~D~tVrlWd  208 (588)
T 2j04_A          138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-----SKDWVTHIVWYE--DV--LVAALSNNSVFSMT  208 (588)
T ss_dssp             CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-----CCCCEEEEEEET--TE--EEEEETTCCEEEEC
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc-----ccccEEEEEEcC--Cc--EEEEeCCCeEEEEE
Confidence            99999999999999999999998752       3444333221     346899999998  55  88889999999999


Q ss_pred             CCCCCC--ceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEE--CCCCCEEEE
Q 020454          244 TSAQRR--PVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIAS  318 (326)
Q Consensus       244 ~~~~~~--~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~l~s  318 (326)
                      +.....  ...++. .|...|.+++|+  |+.|++++ ++.|++||+.+++......+| ...|.+++|  +|++..|++
T Consensus       209 ~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          209 VSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             CCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEE
T ss_pred             CCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEE
Confidence            986632  234563 677899999999  68899887 699999999988874444477 999999999  999999999


Q ss_pred             eccCcc
Q 020454          319 CGFLEA  324 (326)
Q Consensus       319 ~s~D~~  324 (326)
                      ++.||.
T Consensus       285 a~edG~  290 (588)
T 2j04_A          285 SNKTSY  290 (588)
T ss_dssp             CSSCEE
T ss_pred             EcCCCC
Confidence            999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=5.6e-27  Score=200.41  Aligned_cols=253  Identities=11%  Similarity=-0.028  Sum_probs=162.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeee------CCCCCeEEEEecCCcEEEEecccccee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD------SQNDPLLAVARKNGLTDILNPLNGDLR   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~g~~dg~i~i~~~~~~~~~   88 (326)
                      ..+++++.|+.||+|++..+..........+  ..+...+..++|.+      ..++++|++|+.|++|+|||+.++...
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~--~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGK--SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTT--TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeeccc--CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            4688999999999999987611111121122  33444555555543      124568999999999999999776654


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEcccccccccc-------ccceE------
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAES-------SCSTV------  154 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~-------~~~~~------  154 (326)
                      ..+.        .+..++.++.+.+        .+ ..+++++.||.|++||+.........       .....      
T Consensus       180 ~~~~--------~~~~~v~~v~~~p--------~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          180 LAGY--------PLSSPGISVQFRP--------SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             EEEE--------ECSSCEEEEEEET--------TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             eeec--------CCCCCcEEEEECC--------CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            4444        3447888888765        33 47999999999999998764321100       00000      


Q ss_pred             --EE-EEccCCCceEEEEEc-CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc---------CCCCceeeeEE
Q 020454          155 --KS-WNVCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI---------FTPTWFTSAAF  221 (326)
Q Consensus       155 --~~-~~~~~~~~v~~~~~~-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~  221 (326)
                        .. -...+...+.++.|. ++++.|++++.|+++++||+..++....+..+.......         ..........|
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence              00 011234567788876 789999999999999999998876555444332221111         11123344567


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                      +|..++.++++|+.||+|++||+.++ ++......|..+|++++|+|+|++||+++.+| +.+|.+
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            77666767788899999999999987 55677778889999999999999999998776 555544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=4.6e-26  Score=188.89  Aligned_cols=233  Identities=10%  Similarity=0.050  Sum_probs=172.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.||.|++|+++++     +....+..+  ...+..+++.    +.++++|+.++.+++|+...+........ 
T Consensus        80 ~~l~sgs~Dg~v~iw~~~~~-----~~~~~~~~h--~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-  147 (318)
T 4ggc_A           80 NYLAVGTSSAEVQLWDVQQQ-----KRLRNMTSH--SARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLS-  147 (318)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEEECC--SSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred             CEEEEEECCCcEEEeecCCc-----eeEEEecCc--cceEEEeecC----CCEEEEEecCCceEeeecCCCceeEEEEc-
Confidence            56899999999999999987     555555433  3334444442    34799999999999999876544322221 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...+..+.+..        .+..+++++.||.|++||+.......     ....-...+...|.++.++|.+
T Consensus       148 ------~~~~~~~~~~~~~--------~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~  208 (318)
T 4ggc_A          148 ------GHSQEVCGLRWAP--------DGRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQ  208 (318)
T ss_dssp             ------CCSSCEEEEEECT--------TSSEEEEEETTSCEEEEESSCBTTBS-----CCSEEECCCCSCEEEEEECTTS
T ss_pred             ------CccCceEEEEEcC--------CCCEEEEEecCcceeEEECCCCcccc-----cceeeecccCCceEEEEecCCC
Confidence                  4556777777655        56789999999999999987543211     1111222346689999999976


Q ss_pred             C-E--EEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE--EeCCCeEEEEeCCCCCC
Q 020454          175 K-F--SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       175 ~-~--l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~--~~~dg~v~iwd~~~~~~  249 (326)
                      . +  +++++.++.|++||.+..........          ...+..+.|.|..  ..+++  ++.|+.|++||++++ +
T Consensus       209 ~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~----------~~~v~~~~~~~~~--~~~~~~sg~~d~~i~iwd~~~~-~  275 (318)
T 4ggc_A          209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDA----------HSQVCSILWSPHY--KELISGHGFAQNQLVIWKYPTM-A  275 (318)
T ss_dssp             TTEEEEEECTTTCEEEEEETTTCCEEEEEEC----------SSCEEEEEEETTT--TEEEEEECTTTCCEEEEETTTC-C
T ss_pred             CcEEEEEecCCCCEEEEEecccccccccccc----------eeeeeeeeecccc--cceEEEEEcCCCEEEEEECCCC-c
Confidence            4 3  35778899999999988776554332          2457788998853  35554  447999999999987 6


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                      ++.++.+|...|++++|+|++++|++|+.||+|+|||+.+..
T Consensus       276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            789999999999999999999999999999999999997653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.5e-26  Score=197.87  Aligned_cols=244  Identities=9%  Similarity=0.012  Sum_probs=175.9

Q ss_pred             eeeeeecCcccEEEEEecCCcC-----CCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEEecCCcEEEEecccccee
Q 020454           15 LRALTFDSLGLIKVIEARGEHG-----GVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLR   88 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~~~~~~~   88 (326)
                      ..+++++.+|.|++|++.....     +.......+..+..  .+.+++|  .+.++ +|++|+.||.|++|++..+...
T Consensus       142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~  217 (430)
T 2xyi_A          142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK--EGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKE  217 (430)
T ss_dssp             EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS--CCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred             cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC--CeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence            5688999999999999986200     11122223333333  3334444  33444 8999999999999999763321


Q ss_pred             ----eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCc
Q 020454           89 ----VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (326)
Q Consensus        89 ----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (326)
                          .....+     ..+...|.++.+.+.       ....+++++.+|.|++||++....     ...+..+. .+...
T Consensus       218 ~~~~~~~~~~-----~~h~~~v~~v~~~p~-------~~~~l~s~~~dg~i~i~d~~~~~~-----~~~~~~~~-~~~~~  279 (430)
T 2xyi_A          218 HRVIDAKNIF-----TGHTAVVEDVAWHLL-------HESLFGSVADDQKLMIWDTRNNNT-----SKPSHTVD-AHTAE  279 (430)
T ss_dssp             GGEEECSEEE-----CCCSSCEEEEEECSS-------CTTEEEEEETTSEEEEEETTCSCS-----SSCSEEEE-CCSSC
T ss_pred             Cceeccceee-----cCCCCCEeeeEEeCC-------CCCEEEEEeCCCeEEEEECCCCCC-----CcceeEee-cCCCC
Confidence                111111     255678988887541       346788999999999999875421     11333333 45678


Q ss_pred             eEEEEEcCCCC-EEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          165 IAFSKVDISEK-FSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       165 v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      |.+++|+|++. +|++|+.|+.|++||+++ ..++..+..|.         ..|++++|+|. +..+|++++.|+.|++|
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~---------~~v~~i~~sp~-~~~~l~s~~~d~~i~iw  349 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK---------DEIFQVQWSPH-NETILASSGTDRRLHVW  349 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS---------SCEEEEEECSS-CTTEEEEEETTSCCEEE
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC---------CCEEEEEECCC-CCCEEEEEeCCCcEEEE
Confidence            99999999886 789999999999999997 44555555543         56999999995 33479999999999999


Q ss_pred             eCCCCC-------------CceeEEeecCCceEEEEecCCCC-eEEEEcCCCcEEEEECCCC
Q 020454          243 DTSAQR-------------RPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       243 d~~~~~-------------~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~~dg~v~iwd~~~~  290 (326)
                      |++...             ..+..+..|...|++++|+|++. +|++++.||.|++|++...
T Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            998622             34556667888999999999998 8889999999999998753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.5e-26  Score=186.00  Aligned_cols=241  Identities=10%  Similarity=0.023  Sum_probs=149.1

Q ss_pred             CCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc-------------------------eEEEEEeeeCC
Q 020454            9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN-------------------------CVLAASIDDSQ   63 (326)
Q Consensus         9 ~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~   63 (326)
                      .++|..+.++++.+. .|++|+....  ...+..++|..++.++                         ..++++.++..
T Consensus        49 ~~~~~~~~~~~~~~~-~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~  125 (356)
T 2w18_A           49 RAGCKEPCIITACED-VVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDES  125 (356)
T ss_dssp             ----CEEEEEEEESS-EEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------
T ss_pred             cCCCCccEEEEeccc-eEEEcccCCC--ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccc
Confidence            567888888888874 6889998865  1222333443322111                         11112222222


Q ss_pred             CCCeEEEEec--------------------CCcEEEEec-cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCC
Q 020454           64 NDPLLAVARK--------------------NGLTDILNP-LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (326)
Q Consensus        64 ~~~~l~~g~~--------------------dg~i~i~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~  122 (326)
                      .++++++++.                    |+.|++|++ .+++.+..+..        +...+..+.+.+-+     ++
T Consensus       126 ~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~--------~~~~v~~l~fs~~~-----g~  192 (356)
T 2w18_A          126 EKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL--------MPPEETILTFAEVQ-----GM  192 (356)
T ss_dssp             CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE--------CCCSSCEEEEEEEE-----TS
T ss_pred             cccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc--------CCCceeeEEeeccC-----CC
Confidence            2556666553                    667777777 33555444332        12233333332212     15


Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEE------------EEecCCCeEEE
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFS------------LFGGKGVEVNV  188 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l------------~sg~~d~~i~i  188 (326)
                      ...|++++.|++|++||+....        .++.+...+  ...+.+++|+|+++++            ++|+.|++|++
T Consensus       193 ~~~LaSgS~D~TIkIWDl~TGk--------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          193 QEALLGTTIMNNIVIWNLKTGQ--------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC--------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             CceEEEecCCCcEEEEECCCCc--------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence            5789999999999999987644        344444221  2357788899998776            67889999999


Q ss_pred             EECCCceeeeeec-----CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceE-
Q 020454          189 WDLDKCEKIWTAK-----PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-  262 (326)
Q Consensus       189 wd~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~-  262 (326)
                      ||..+++.+..+.     ++.         ..+.+..+.    +.++++++.|++|+|||+.++ +.+.++..|...+. 
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~---------~~~lsg~~s----g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs  330 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQA---------GRFLEGDVK----DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWS  330 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCC---------CCEEEEEEE----TTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCC
T ss_pred             EECCCCEEEEEEEeeccCCCc---------ceeEccccC----CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEE
Confidence            9999998765431     221         112223332    458999999999999999987 67889988876554 


Q ss_pred             EEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          263 AVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       263 ~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                      +++|+|+|++|++|+.|++|+|||+
T Consensus       331 ~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEecC
Confidence            6899999999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=1.3e-25  Score=189.77  Aligned_cols=236  Identities=14%  Similarity=0.114  Sum_probs=178.5

Q ss_pred             CCCceEEEEEeeeCC-CCCeEEEEecCCcEEEEeccc-ccee-eeecccCCCCCCCCCCCeeeeecccccccccCCCCce
Q 020454           49 HSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLN-GDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~  125 (326)
                      .+...+.++.|..+. .+++|++|+.||.|++||+.+ +..+ ..+.        .|.+.|.++.+.+        ++..
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~  100 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ--------MHTGPVLDVCWSD--------DGSK  100 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE--------ECSSCEEEEEECT--------TSSE
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec--------cccCCEEEEEECc--------CCCE
Confidence            344555566665432 146899999999999999986 4443 2332        5568899999766        5678


Q ss_pred             EEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE--cCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV--DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       126 l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      |++++.||.|++|+++...        .+..  ..+...|.+++|  +|++++|++++.|+.|++||+++++.+..+..+
T Consensus       101 l~s~~~dg~v~iwd~~~~~--------~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  170 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQ--------AIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP  170 (368)
T ss_dssp             EEEEETTSEEEEEETTTTE--------EEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred             EEEEcCCCcEEEEEcCCCC--------ceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence            9999999999999987543        2232  235788999999  899999999999999999999998877766543


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCe----EEEEcC
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFN----IYIGNG  278 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~----l~~g~~  278 (326)
                      .          .+.++.+.+    ..+++++.++.+++||++.......... .....+.++++.++...    +++|+.
T Consensus       171 ~----------~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          171 E----------RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             S----------CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             C----------CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            2          244555543    2788899999999999987633332222 23345666676666555    999999


Q ss_pred             CCcEEEEECCCC---eEEEEEcceecc------------eEEEEEECCCCCEEEEeccCccC
Q 020454          279 SGDLASVDIRTG---KLLGCFIGKCSG------------SIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       279 dg~v~iwd~~~~---~~~~~~~~~~~~------------~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ||.|++||++..   +.+..+.+| ..            +|++++|+|++++|++++.||.+
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i  297 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF  297 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE
T ss_pred             CCcEEEEecCCCCccccceeeeee-ecccccccccccccceEEEEEecCCCEEEEEccCCeE
Confidence            999999999987   556777776 54            79999999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-24  Score=188.07  Aligned_cols=263  Identities=10%  Similarity=-0.029  Sum_probs=181.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      +.-+....+|.++.|++... .+.. + ....   +...+.++.|  ++++.+||+++.||.|++||.+.  .+..+. .
T Consensus        55 v~~V~FsPdg~~~~~~~~~~-~~~~-~-~~~~---~~~~V~~vaw--SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~  123 (588)
T 2j04_A           55 LFHVKEFPLEFENKLDFELA-QQNG-L-LNSQ---PVCYPRVCKP--SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-S  123 (588)
T ss_dssp             TEEEEEECCCCCCTTTTSCC-CSSC-S-STTS---CSCCEEEEEE--CSSSSCEEEEETTSCEEEEETTE--EEEECC-C
T ss_pred             EEEEEECCCCCcceEEEEeC-CCce-E-eecC---CCCcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-C
Confidence            55677777777777777654 1111 1 1222   1445555555  45677999999999999999643  333322 1


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEE---ccCCCceEEEEEc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVD  171 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~  171 (326)
                      ..   ......+.++++.+        ++..|++++.||.|++|++....... ..--.+..+.   ..+...|.+++|+
T Consensus       124 ~~---~~~~~sv~svafSP--------DG~~LAsgs~DGtVkIWd~~~~~l~~-~~~i~l~ti~~~~~gh~~~V~sVawS  191 (588)
T 2j04_A          124 KG---NLSSRTYHCFEWNP--------IESSIVVGNEDGELQFFSIRKNSENT-PEFYFESSIRLSDAGSKDWVTHIVWY  191 (588)
T ss_dssp             SS---CSTTTCEEEEEECS--------SSSCEEEEETTSEEEEEECCCCTTTC-CCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred             CC---ccccccEEEEEEcC--------CCCEEEEEcCCCEEEEEECCCCcccc-ccceeeeeeecccccccccEEEEEEc
Confidence            10   01123588899766        77899999999999999987532100 0000234443   3345689999999


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceee---eeec-CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKI---WTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      |++  +++++.|++|++||+..++..   ..++ .|.         ..|.+++|+    ++.+|+++ +++|++||+..+
T Consensus       192 Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~---------~~V~svaFs----g~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          192 EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR---------RKITDLKIV----DYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS---------SCCCCEEEE----TTEEEEEC-SSEEEEEETTTT
T ss_pred             CCc--EEEEeCCCeEEEEECCCCccccceeeeccccc---------CcEEEEEEE----CCEEEEEe-CCeEEEEECCCC
Confidence            999  778889999999999876632   2332 222         458899998    24888887 799999999976


Q ss_pred             CCceeEEe-ecCCceEEEEe--cCCCCeEEEEcCCCcEEEEECCC-----------------------CeEEEEEcceec
Q 020454          248 RRPVMSFD-FRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRT-----------------------GKLLGCFIGKCS  301 (326)
Q Consensus       248 ~~~~~~~~-~~~~~i~~v~~--s~~~~~l~~g~~dg~v~iwd~~~-----------------------~~~~~~~~~~~~  301 (326)
                       + ...+. +|...+..++|  +|++..+++++.||+ ++|....                       +..+..+. + .
T Consensus       256 -~-~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~-~  330 (588)
T 2j04_A          256 -S-ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-T-T  330 (588)
T ss_dssp             -E-EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-C-E
T ss_pred             -e-EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-c-c
Confidence             3 32333 78999999999  999999999999999 9998742                       11122222 2 4


Q ss_pred             ceEEEEEECCCCCEEEEecc
Q 020454          302 GSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       302 ~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ..|.+++|+|+|+.+|+++.
T Consensus       331 ~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          331 LVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEEEECCCCCEEEEEEe
Confidence            46999999999999998864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=1.3e-23  Score=181.77  Aligned_cols=262  Identities=8%  Similarity=-0.004  Sum_probs=186.6

Q ss_pred             eecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCC
Q 020454           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG   98 (326)
Q Consensus        19 ~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~   98 (326)
                      ++.++|.+++|.+... .+..+....+..+...   .++.+  ++.+.++++++.++.|++||+.+++.........   
T Consensus        94 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~---~~~~~--s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---  164 (433)
T 3bws_A           94 RKPEELNEKLIALDKE-GITHRFISRFKTGFQP---KSVRF--IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK---  164 (433)
T ss_dssp             SSGGGGTTCEEECCBT-TCSEEEEEEEECSSCB---CCCEE--SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH---
T ss_pred             cccCCCceEEEEECCC-CCcceEEEEEcCCCCc---eEEEE--eCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc---
Confidence            4566776667766543 2222233333322221   12333  3355577778888999999999888765332100   


Q ss_pred             CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE-
Q 020454           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS-  177 (326)
Q Consensus        99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-  177 (326)
                      ...+.+.+.++.+.+        ++..+++++.++.|++|+++...        .+..+. .+...+.+++|+|+++++ 
T Consensus       165 ~~~~~~~v~~~~~~~--------~~~~~~s~~~d~~v~~~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~  227 (433)
T 3bws_A          165 YKKKLGFVETISIPE--------HNELWVSQMQANAVHVFDLKTLA--------YKATVD-LTGKWSKILLYDPIRDLVY  227 (433)
T ss_dssp             HHTTCCEEEEEEEGG--------GTEEEEEEGGGTEEEEEETTTCC--------EEEEEE-CSSSSEEEEEEETTTTEEE
T ss_pred             ccccCCceeEEEEcC--------CCEEEEEECCCCEEEEEECCCce--------EEEEEc-CCCCCeeEEEEcCCCCEEE
Confidence            014456788888643        45678899999999999986533        333333 346689999999999877 


Q ss_pred             EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe--------CCCeEEEEeCCCCCC
Q 020454          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------NDHQVRLYDTSAQRR  249 (326)
Q Consensus       178 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~--------~dg~v~iwd~~~~~~  249 (326)
                      ++++.|+.|++||+++++.+..+..+          ..+.+++|+|  +++.+++++        .|+.|++||++++ +
T Consensus       228 ~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~  294 (433)
T 3bws_A          228 CSNWISEDISVIDRKTKLEIRKTDKI----------GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKE-K  294 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECCCC----------SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTT-E
T ss_pred             EEecCCCcEEEEECCCCcEEEEecCC----------CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCC-c
Confidence            55668999999999998877665432          3478899998  555788777        5899999999976 4


Q ss_pred             ceeEEeecCCceEEEEecCCCCeE-EEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l-~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      .+..+ .+...+..++|+|+++++ ++++.++.|++||+.+++.+..+. + ...+.+++|+|++++|++++.+
T Consensus       295 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          295 LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V-FDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEECC
T ss_pred             EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-C-CCCCCeEEEcCCCCEEEEEecC
Confidence            44444 444578999999999765 567899999999999999888876 4 7789999999999988888763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=4.6e-23  Score=175.94  Aligned_cols=212  Identities=12%  Similarity=0.097  Sum_probs=166.5

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~  145 (326)
                      ++++++.|+.|++||+.+++.+..+..        + ..+.++.+.+        ++..+ ++++.++.|++||+.... 
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~--------~-~~~~~~~~s~--------dg~~l~~~~~~d~~i~v~d~~~~~-   65 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPV--------G-SNPMGAVISP--------DGTKVYVANAHSNDVSIIDTATNN-   65 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC--------S-SSEEEEEECT--------TSSEEEEEEGGGTEEEEEETTTTE-
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeec--------C-CCcceEEECC--------CCCEEEEECCCCCeEEEEECCCCe-
Confidence            578889999999999998888776653        2 3477777654        44555 677799999999976533 


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCCCEEE-EecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                             .+..+..  ...+.+++|+|++++|+ +++.++.|++||+.+++.+..+..+          ..+.+++|+| 
T Consensus        66 -------~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~s~-  125 (391)
T 1l0q_A           66 -------VIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLALSP-  125 (391)
T ss_dssp             -------EEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEECT-
T ss_pred             -------EEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------CCcceEEECC-
Confidence                   3344443  44899999999998774 5567799999999998887665532          3477899998 


Q ss_pred             CCCcEE-EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE-EEEcCCCcEEEEECCCCeEEEEEcceecc
Q 020454          225 DDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       225 ~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~g~~dg~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                       +++.+ ++++.++.|++||++++ +.+..+..+ ..+..++|+|++++| ++++.++.|++||+++++.+..+..  ..
T Consensus       126 -dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~  200 (391)
T 1l0q_A          126 -DGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EA  200 (391)
T ss_dssp             -TSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SS
T ss_pred             -CCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CC
Confidence             45555 78888999999999976 556666555 567999999999988 5778899999999999998887763  66


Q ss_pred             eEEEEEECCCCCEEEEecc
Q 020454          303 SIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s~  321 (326)
                      .+.+++|+|++++|++++.
T Consensus       201 ~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          201 APSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEEEEEECTTSSEEEEEEE
T ss_pred             CccceEECCCCCEEEEEec
Confidence            8999999999999998873

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.6e-22  Score=165.49  Aligned_cols=258  Identities=12%  Similarity=0.040  Sum_probs=176.5

Q ss_pred             eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-cceeeeecccCC
Q 020454           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGD   96 (326)
Q Consensus        18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~   96 (326)
                      ...+.++.|++||+.++     +...... +  ...+.++.+  ++++++|++++ ++.|.+||+.+ ++.......   
T Consensus        16 ~~~~~~~~i~~~d~~~~-----~~~~~~~-~--~~~v~~~~~--spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---   81 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTR-----KMRVVWQ-T--PELFEAPNW--SPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---   81 (297)
T ss_dssp             --CCCCEEEEEEETTTT-----EEEEEEE-E--SSCCEEEEE--CTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT---
T ss_pred             CCCCcceeEEEEeCCCC-----ceeeecc-C--CcceEeeEE--CCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc---
Confidence            34567899999999876     3332222 2  223334444  45566788876 88999999987 765443321   


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCceEEEEe--cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~--~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                          .+...+.++.+.+        ++..++++.  .++...+|.++....       ..+.  +.....+..++|+|++
T Consensus        82 ----~~~~~~~~~~~sp--------dg~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~--~~~~~~~~~~~~spdg  140 (297)
T 2ojh_A           82 ----FATICNNDHGISP--------DGALYAISDKVEFGKSAIYLLPSTGG-------TPRL--MTKNLPSYWHGWSPDG  140 (297)
T ss_dssp             ----TCCCBCSCCEECT--------TSSEEEEEECTTTSSCEEEEEETTCC-------CCEE--CCSSSSEEEEEECTTS
T ss_pred             ----cccccccceEECC--------CCCEEEEEEeCCCCcceEEEEECCCC-------ceEE--eecCCCccceEECCCC
Confidence                2234566677655        556788877  445677777654221       1222  2223458889999999


Q ss_pred             CEEE-EecCCCeEEEEECC--CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCCCc
Q 020454          175 KFSL-FGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRP  250 (326)
Q Consensus       175 ~~l~-sg~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~  250 (326)
                      ++|+ +++.++.++||++.  +++. ..+..         +...+.++.|+|  +++.|+.++ .++.+++|++......
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~---------~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~  208 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSGVE-TRLTH---------GEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSS  208 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCE-EECCC---------SSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             CEEEEEECCCCceEEEEEECCCCcc-eEccc---------CCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCC
Confidence            8776 77889999999864  3332 22222         224578999998  455666555 5899999998633345


Q ss_pred             eeEEeecCCceEEEEecCCCCeEEEEcCC-----------CcEEEEECCCCeE--EEEEcceecceEEEEEECCCCCEEE
Q 020454          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGS-----------GDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-----------g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      +..+..+...+..++|+|+|++|++++.+           +.|++||+.+++.  +..+.+| ...+.+++|+|++++|+
T Consensus       209 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~  287 (297)
T 2ojh_A          209 VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFA  287 (297)
T ss_dssp             EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEE
T ss_pred             cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEE
Confidence            66777777789999999999999977765           5699999998765  4445566 78899999999999998


Q ss_pred             EeccCc
Q 020454          318 SCGFLE  323 (326)
Q Consensus       318 s~s~D~  323 (326)
                      +++.|.
T Consensus       288 ~~~~~~  293 (297)
T 2ojh_A          288 YVRYFP  293 (297)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            888765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=6.2e-22  Score=170.19  Aligned_cols=214  Identities=8%  Similarity=-0.003  Sum_probs=155.9

Q ss_pred             CeEEEEecC------CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC---cEE
Q 020454           66 PLLAVARKN------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KAS  136 (326)
Q Consensus        66 ~~l~~g~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g---~v~  136 (326)
                      ..++.++.+      +.|++||+..+. ...+.        .+...+.++.+.+        ++..++.++.++   .|+
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~--------~~~~~v~~~~~Sp--------dg~~la~~s~~~~~~~i~  206 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH--------RSPQPLMSPAWSP--------DGSKLAYVTFESGRSALV  206 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE--------EESSCEEEEEECT--------TSSEEEEEECTTSSCEEE
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCCC-CEEEe--------CCCCcceeeEEcC--------CCCEEEEEEecCCCcEEE
Confidence            346666554      799999996443 34433        2336788888765        567888888775   999


Q ss_pred             EEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE-EecCCCe--EEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454          137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (326)
Q Consensus       137 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~  213 (326)
                      +||+....        ...+ . .+...+.+++|+|++++|+ +++.++.  |.+||+.+++.. .+..+         .
T Consensus       207 ~~d~~tg~--------~~~l-~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~---------~  266 (415)
T 2hqs_A          207 IQTLANGA--------VRQV-A-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG---------R  266 (415)
T ss_dssp             EEETTTCC--------EEEE-E-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCC---------S
T ss_pred             EEECCCCc--------EEEe-e-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCC---------C
Confidence            99986432        2222 1 2356799999999999777 6666554  999999887653 33332         2


Q ss_pred             CceeeeEEeecCCCcEEEEEeC-CC--eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcEEEEEC
Q 020454          214 TWFTSAAFLSIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDI  287 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~  287 (326)
                      ..+.+++|+|  +++.|+.++. ++  .|++||+.++ + ...+..+...+..++|+|+|++|+.++.+   ..|++||+
T Consensus       267 ~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          267 SNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             CcccceEECC--CCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            4578999998  5667887775 45  7888898866 3 34555666788999999999999977764   58999999


Q ss_pred             CCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .+++.. .+..+ . .+.+++|+|++++|++++.|+
T Consensus       343 ~~~~~~-~l~~~-~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          343 ATGGVQ-VLSST-F-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             TTCCEE-ECCCS-S-SCEEEEECTTSSEEEEEEEET
T ss_pred             CCCCEE-EecCC-C-CcCCeEEcCCCCEEEEEEcCC
Confidence            988774 45554 4 899999999999999998776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=8.5e-21  Score=168.15  Aligned_cols=271  Identities=10%  Similarity=0.018  Sum_probs=186.5

Q ss_pred             eeeeeecCcccEEEEEe--cCCcCCCcceeeeccCCCCCceEEEEEeeeCC----CCCeEEEEe-cCCcEEEEeccccce
Q 020454           15 LRALTFDSLGLIKVIEA--RGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ----NDPLLAVAR-KNGLTDILNPLNGDL   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~g~-~dg~i~i~~~~~~~~   87 (326)
                      -+|++++.+|.|++||+  .+.     ++...+...   .....+.+  ++    ++++|++++ .+++|.+||..+++.
T Consensus       191 ~~l~v~~~d~~V~v~D~~~~t~-----~~~~~i~~g---~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          191 RYLLVIGRDARIDMIDLWAKEP-----TKVAEIKIG---IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             CEEEEEETTSEEEEEETTSSSC-----EEEEEEECC---SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEECcCCCC-----cEEEEEecC---CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            46788888899999999  554     344344322   12233334  44    667888887 489999999998888


Q ss_pred             eeeecccCCCCC--C-CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCc
Q 020454           88 RVAISNAGDSGA--Q-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (326)
Q Consensus        88 ~~~~~~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (326)
                      +..+........  . .....+.++.+.+.       ....+++...++.|.+|++....        .+.+........
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-------~~~~~vs~~~~g~i~vvd~~~~~--------~l~~~~i~~~~~  325 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHE-------HPEFIVNVKETGKVLLVNYKDID--------NLTVTSIGAAPF  325 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSS-------SSEEEEEETTTTEEEEEECTTSS--------SCEEEEEECCSS
T ss_pred             ceeecccCcccCccccccCCceEEEEECCC-------CCEEEEEECCCCeEEEEEecCCC--------cceeEEeccCcC
Confidence            777653110000  0 01124555654331       23467778889999999976533        222222334567


Q ss_pred             eEEEEEcCCCCEEEEe-cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEE
Q 020454          165 IAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLY  242 (326)
Q Consensus       165 v~~~~~~~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iw  242 (326)
                      +..+.|+|++++|+++ ..+++|.+||+.+++.+..+....     ..++.....+ ++|. .+..++++. .|++|.+|
T Consensus       326 ~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~-----~ph~g~g~~~-~~p~-~g~~~~s~~~~d~~V~v~  398 (543)
T 1nir_A          326 LHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-----TPHPGRGANF-VHPK-YGPVWSTSHLGDGSISLI  398 (543)
T ss_dssp             CCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SBCCTTCEEE-EETT-TEEEEEEEBSSSSEEEEE
T ss_pred             ccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-----CCCCCCCccc-CCCC-CccEEEeccCCCceEEEE
Confidence            8889999999976654 568999999999998877665321     1122222222 3442 355677775 68999999


Q ss_pred             eCCC-------CCCceeEEeecCCceEEEEecCCCCeEEEEc-------CCCcEEEEECCCCeEE-EEE--------cce
Q 020454          243 DTSA-------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIRTGKLL-GCF--------IGK  299 (326)
Q Consensus       243 d~~~-------~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-------~dg~v~iwd~~~~~~~-~~~--------~~~  299 (326)
                      |+.+       . +.++++..+...+..++++|++++|++++       .+++|.+||+.+++.. ..+        ..+
T Consensus       399 d~~~~~~~~~~~-~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~  477 (543)
T 1nir_A          399 GTDPKNHPQYAW-KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  477 (543)
T ss_dssp             ECCTTTCTTTBT-SEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             EeCCCCCchhcC-eEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence            9987       4 56888888888888999999999999987       2679999999998877 443        244


Q ss_pred             ecceEEEEEECCCCCEEEEe
Q 020454          300 CSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       300 ~~~~v~~l~~~p~~~~l~s~  319 (326)
                       ...+.++.|+|+|+.|+.+
T Consensus       478 -~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          478 -AKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             -CCEEEEEEECSSSSEEEEE
T ss_pred             -CCceEeccCCCCCCEEEEE
Confidence             6789999999999988866

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=4.2e-20  Score=154.50  Aligned_cols=267  Identities=9%  Similarity=0.059  Sum_probs=167.3

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC-CcEEEEecc--ccceeeeecc
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPL--NGDLRVAISN   93 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-g~i~i~~~~--~~~~~~~~~~   93 (326)
                      ++++..+|.|++|++...  +..+....+..... ..  .+.+  ++++++|++++.+ +.|.+|++.  +++... +..
T Consensus         8 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~-~~--~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~   79 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHE--GALTLTQVVDVPGQ-VQ--PMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAE   79 (343)
T ss_dssp             EEEEGGGTEEEEEEECTT--SCEEEEEEEECSSC-CC--CEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEE
T ss_pred             EEeCCCCCeEEEEEECCC--CcEEEeeeEecCCC-Cc--eEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceee-ccc
Confidence            445578999999999632  22223323332222 11  2333  4566678888876 999999997  455322 211


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                      +.     .+ ..+..+.+.+        ++..+++++ .++.|.+|+++...     ....+...  .....+.+++|+|
T Consensus        80 ~~-----~~-~~~~~~~~s~--------dg~~l~~~~~~~~~i~~~d~~~~~-----~~~~~~~~--~~~~~~~~~~~s~  138 (343)
T 1ri6_A           80 SA-----LP-GSLTHISTDH--------QGQFVFVGSYNAGNVSVTRLEDGL-----PVGVVDVV--EGLDGCHSANISP  138 (343)
T ss_dssp             EE-----CS-SCCSEEEECT--------TSSEEEEEETTTTEEEEEEEETTE-----EEEEEEEE--CCCTTBCCCEECT
T ss_pred             cc-----cC-CCCcEEEEcC--------CCCEEEEEecCCCeEEEEECCCCc-----cccccccc--cCCCCceEEEECC
Confidence            10     11 2556666544        455565555 48889999985111     01122222  2345688999999


Q ss_pred             CCCEEEEec-CCCeEEEEECCC-ceeee----eecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCC
Q 020454          173 SEKFSLFGG-KGVEVNVWDLDK-CEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS  245 (326)
Q Consensus       173 ~~~~l~sg~-~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~  245 (326)
                      ++++|++++ .++.|.+||+.+ ++...    .....        ....+..++|+|  ++++++ ++..++.|++||+.
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~p--dg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV--------EGAGPRHMVFHP--NEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS--------TTCCEEEEEECT--TSSEEEEEETTTTEEEEEESS
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccC--------CCCCcceEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence            998887776 889999999987 54322    11111        113467889998  455554 55589999999996


Q ss_pred             CCC-Cc--eeEEee---c---CCceEEEEecCCCCeEE-EEcCCCcEEEEECC--C--CeEEEEEcceecceEEEEEECC
Q 020454          246 AQR-RP--VMSFDF---R---ETPIKAVAEEPDSFNIY-IGNGSGDLASVDIR--T--GKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       246 ~~~-~~--~~~~~~---~---~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~--~--~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      ... ..  ...+..   .   ...+..++|+|+|++|+ ++..++.|.+||+.  +  .+.+..+..+ . .+.+++|+|
T Consensus       209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~s~  286 (343)
T 1ri6_A          209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNVDH  286 (343)
T ss_dssp             CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEECT
T ss_pred             CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEECC
Confidence            421 21  222221   1   23566899999999887 55578999999998  3  3455556543 3 389999999


Q ss_pred             CCCEEEEec-cCcc
Q 020454          312 TLPIIASCG-FLEA  324 (326)
Q Consensus       312 ~~~~l~s~s-~D~~  324 (326)
                      ++++|++++ .|+.
T Consensus       287 dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          287 SGKYLIAAGQKSHH  300 (343)
T ss_dssp             TSSEEEEECTTTCE
T ss_pred             CCCEEEEecCCCCe
Confidence            999888877 4554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=5.9e-20  Score=157.91  Aligned_cols=246  Identities=12%  Similarity=0.035  Sum_probs=170.2

Q ss_pred             eeeeeecCc------ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCC---cEEEEecccc
Q 020454           15 LRALTFDSL------GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG---LTDILNPLNG   85 (326)
Q Consensus        15 ~~l~~~~~~------G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~i~i~~~~~~   85 (326)
                      -+++.++.+      +.|++||+.++  ...    .+..  +...+....  +++++++|++++.++   .|++||+.++
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~----~l~~--~~~~v~~~~--~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGY--NQF----VVHR--SPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSC--SCE----EEEE--ESSCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCC--CCE----EEeC--CCCcceeeE--EcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence            466666554      79999999754  111    2211  122333444  456677899998875   9999999888


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCc--EEEEEccccccccccccceEEEEEccCC
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      +... +.        .+.+.+.++.+.+        ++..|+ +++.++.  |++|++....         .+.. ..+.
T Consensus       214 ~~~~-l~--------~~~~~~~~~~~sp--------dg~~la~~~~~~g~~~i~~~d~~~~~---------~~~l-~~~~  266 (415)
T 2hqs_A          214 AVRQ-VA--------SFPRHNGAPAFSP--------DGSKLAFALSKTGSLNLYVMDLASGQ---------IRQV-TDGR  266 (415)
T ss_dssp             CEEE-EE--------CCSSCEEEEEECT--------TSSEEEEEECTTSSCEEEEEETTTCC---------EEEC-CCCS
T ss_pred             cEEE-ee--------cCCCcccCEEEcC--------CCCEEEEEEecCCCceEEEEECCCCC---------EEeC-cCCC
Confidence            7643 32        2235677777655        455566 5666665  7888865432         1111 1234


Q ss_pred             CceEEEEEcCCCCEEEEecC-CC--eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---
Q 020454          163 GTIAFSKVDISEKFSLFGGK-GV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---  236 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d---  236 (326)
                      ..+.+++|+|++++|++++. ++  .|.+||+.+++... +..         +...+.+++|+|  ++++|+.++.+   
T Consensus       267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~---------~~~~~~~~~~sp--dG~~l~~~~~~~g~  334 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITW---------EGSQNQDADVSS--DGKFMVMVSSNGGQ  334 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCC---------SSSEEEEEEECT--TSSEEEEEEECSSC
T ss_pred             CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Eec---------CCCcccCeEECC--CCCEEEEEECcCCc
Confidence            67899999999998887775 44  67888988765322 211         124578899998  56688877654   


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC---cEEEEECCCCeEEEEEcceecceEEEEEECCCC
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~  313 (326)
                      ..|++||+.++ + ...+..+. .+.+++|+|+|++|+.++.++   .|++||+. ++....+.+| .+.|.+++|+|..
T Consensus       335 ~~i~~~d~~~~-~-~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~-~~~v~~~~~~~~~  409 (415)
T 2hqs_A          335 QHIAKQDLATG-G-VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSPYL  409 (415)
T ss_dssp             EEEEEEETTTC-C-EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS-SSEEEEEEECCCC
T ss_pred             eEEEEEECCCC-C-EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC-CCCCcCCcccccc
Confidence            58999999976 3 34555553 899999999999999888776   79999987 5556778887 9999999999975


Q ss_pred             C
Q 020454          314 P  314 (326)
Q Consensus       314 ~  314 (326)
                      .
T Consensus       410 ~  410 (415)
T 2hqs_A          410 H  410 (415)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.7e-19  Score=151.46  Aligned_cols=261  Identities=11%  Similarity=0.031  Sum_probs=175.8

Q ss_pred             cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCe-EEEEecCCcEEEEeccccceeeeecccCCCCC-C
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAISNAGDSGA-Q  100 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~  100 (326)
                      +|.|.+||..++     ++...+.......   .+.+  ++++++ +++...++.|.+||..+++.+..+........ .
T Consensus        68 ~~~v~~~d~~~~-----~~~~~~~~~~~~~---~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  137 (353)
T 3vgz_A           68 GGVVYRLDPVTL-----EVTQAIHNDLKPF---GATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE  137 (353)
T ss_dssp             SEEEEEECTTTC-----CEEEEEEESSCCC---SEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred             CccEEEEcCCCC-----eEEEEEecCCCcc---eEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence            678999998876     4444443222221   2223  234454 45556679999999998888776654110000 0


Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEe--cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~--~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  178 (326)
                      .....+.++.+.+        +++.++++.  .++.|.+||.....        .+..+.. ....+..+.++|++++++
T Consensus       138 ~~~~~~~~~~~s~--------dg~~l~~~~~~~~~~i~~~d~~~~~--------~~~~~~~-~~~~~~~~~~s~dg~~l~  200 (353)
T 3vgz_A          138 VRPLQPRELVADD--------ATNTVYISGIGKESVIWVVDGGNIK--------LKTAIQN-TGKMSTGLALDSEGKRLY  200 (353)
T ss_dssp             CCCCEEEEEEEET--------TTTEEEEEEESSSCEEEEEETTTTE--------EEEEECC-CCTTCCCCEEETTTTEEE
T ss_pred             cCCCCCceEEECC--------CCCEEEEEecCCCceEEEEcCCCCc--------eEEEecC-CCCccceEEECCCCCEEE
Confidence            0001145566544        455666655  47889999976433        2333321 244578899999999999


Q ss_pred             EecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCCCCceeEEeec
Q 020454          179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDFR  257 (326)
Q Consensus       179 sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~  257 (326)
                      +++.++.|.+||+.+++.+.........     ....+.+++|+|  +++.++++ ..++.|.+||+.++ +.+..+...
T Consensus       201 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~  272 (353)
T 3vgz_A          201 TTNADGELITIDTADNKILSRKKLLDDG-----KEHFFINISLDT--ARQRAFITDSKAAEVLVVDTRNG-NILAKVAAP  272 (353)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCCSS-----SCCCEEEEEEET--TTTEEEEEESSSSEEEEEETTTC-CEEEEEECS
T ss_pred             EEcCCCeEEEEECCCCeEEEEEEcCCCC-----CCcccceEEECC--CCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcC
Confidence            9999999999999999887765542211     123577899998  44455554 45699999999877 556666554


Q ss_pred             CCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          258 ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       258 ~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      .  ...++|+|+++++++++ .++.|.+||..+++.+..+..  ...+.+++|+|++++|+.+..+
T Consensus       273 ~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          273 E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEEC
T ss_pred             C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEcc
Confidence            3  25689999999776555 689999999999999988874  4478999999999977776655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=3.2e-20  Score=154.84  Aligned_cols=264  Identities=11%  Similarity=0.008  Sum_probs=174.4

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeeccc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .++++..+|.|++||+.++     ++...+..+........+.+  +++++++ +++..++.|.+||+.+++.+..+..-
T Consensus         3 ~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             EEEEcCCCCeEEEEECCCC-----cEEEEEEcCCCCCCccceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence            4788999999999999876     44444432221000112223  3445444 55566799999999888876665531


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe------------cCCcEEEEEccccccccccccceEEEEEccCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~------------~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      ...   .+...+.++.+.+        ++..++++.            .++.|.+|++....        .+..+..  .
T Consensus        76 ~~~---~~~~~~~~~~~s~--------dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~--~  134 (337)
T 1pby_B           76 TPE---ERVKSLFGAALSP--------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFEA--P  134 (337)
T ss_dssp             BTT---EEEECTTCEEECT--------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEEC--C
T ss_pred             Ccc---cccccccceEECC--------CCCEEEEEecccccccccccccCceEEEEECCCCc--------EEEEEeC--C
Confidence            000   0011344455543        455677775            57999999976432        2333332  4


Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE-eCCC----
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDH----  237 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-~~dg----  237 (326)
                      ..+..+.++|++++|+++  ++.|.+||+.+++.+..+......          ..+.|+|.  +..++.. ..++    
T Consensus       135 ~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~s~d--g~~l~~~~~~~~~~~~  200 (337)
T 1pby_B          135 RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE----------AETYAQPD--VLAVWNQHESSGVMAT  200 (337)
T ss_dssp             SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT----------TTTBCCCB--CCCCCCCCTTTTEEEE
T ss_pred             CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC----------CCceeCCC--ccEEeeeccCCCceee
Confidence            567889999999988887  688999999998877665433211          11245553  3233322 2222    


Q ss_pred             -------------------eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          238 -------------------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       238 -------------------~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                                         .|.+||+.+++.....+..+...+..++|+|++++++++  ++.|++||+.+++.+..+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~  278 (337)
T 1pby_B          201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL  278 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred             eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC
Confidence                               578999997632223344555678899999999999988  78999999999998887774


Q ss_pred             eecceEEEEEECCCCCEEEEeccCccC
Q 020454          299 KCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       299 ~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                        ...+.+++|+|++++|++++.|+.+
T Consensus       279 --~~~~~~~~~s~dg~~l~~~~~~~~i  303 (337)
T 1pby_B          279 --PHSYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             --SSCCCEEEECTTSCEEEEESBSSEE
T ss_pred             --CCceeeEEECCCCCEEEEEcCCCcE
Confidence              4568899999999999988887753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=5.2e-20  Score=163.12  Aligned_cols=260  Identities=14%  Similarity=0.131  Sum_probs=182.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEec--cccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP--LNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~--~~~~~~~~~~   92 (326)
                      ..++++..+|.|++||..++     ++...+.....   ...+  ..++++++|++++.|++|++||+  .+++.+..+.
T Consensus       150 ~~~vs~~~d~~V~v~D~~t~-----~~~~~i~~g~~---~~~v--~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA---VHIS--RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTC-----CEEEEEECSTT---EEEE--EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEECCCc-----eEEEEEecCcc---cceE--EECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            56788889999999999877     55555542222   2223  33566779999999999999999  7777666655


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEcc----------C
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC----------A  161 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~----------~  161 (326)
                      .        + ..+.++++.+..    ..++.++++++ .++.|.+||.....        .++.+...          .
T Consensus       220 ~--------g-~~p~~va~sp~~----~~dg~~l~v~~~~~~~v~v~D~~t~~--------~~~~i~~~g~~~~~~~~~~  278 (543)
T 1nir_A          220 I--------G-IEARSVESSKFK----GYEDRYTIAGAYWPPQFAIMDGETLE--------PKQIVSTRGMTVDTQTYHP  278 (543)
T ss_dssp             C--------C-SEEEEEEECCST----TCTTTEEEEEEEESSEEEEEETTTCC--------EEEEEECCEECSSSCCEES
T ss_pred             c--------C-CCcceEEeCCCc----CCCCCEEEEEEccCCeEEEEeccccc--------cceeecccCcccCcccccc
Confidence            2        1 345667653200    00245676666 58999999976533        34444331          1


Q ss_pred             CCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCC
Q 020454          162 SGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDH  237 (326)
Q Consensus       162 ~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg  237 (326)
                      ...+..+.++|++ .++++...++.|.+||+.+.+.+.  .+.          ...++..+.|+|  ++++|+ ++..++
T Consensus       279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~----------~~~~~~~~~~sp--dg~~l~va~~~~~  346 (543)
T 1nir_A          279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG----------AAPFLHDGGWDS--SHRYFMTAANNSN  346 (543)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE----------CCSSCCCEEECT--TSCEEEEEEGGGT
T ss_pred             CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec----------cCcCccCceECC--CCCEEEEEecCCC
Confidence            2368899999976 566777889999999998765433  221          123466889998  565655 455689


Q ss_pred             eEEEEeCCCCCCceeEEee----cCCceEEEEecCC-CCeEEEEc-CCCcEEEEECCC-------CeEEEEEcceecceE
Q 020454          238 QVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPD-SFNIYIGN-GSGDLASVDIRT-------GKLLGCFIGKCSGSI  304 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~----~~~~i~~v~~s~~-~~~l~~g~-~dg~v~iwd~~~-------~~~~~~~~~~~~~~v  304 (326)
                      +|.+||+.++ +.+..+..    |......+ ++|+ +..++++. .|++|.+||+.+       .++++++.+| .+.+
T Consensus       347 ~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g~~~  423 (543)
T 1nir_A          347 KVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGS  423 (543)
T ss_dssp             EEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCC
T ss_pred             eEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-CCCc
Confidence            9999999987 55666664    43333333 4677 55666665 579999999998       8999999987 8889


Q ss_pred             EEEEECCCCCEEEEec
Q 020454          305 RSIARHPTLPIIASCG  320 (326)
Q Consensus       305 ~~l~~~p~~~~l~s~s  320 (326)
                      ..++++|++++|++++
T Consensus       424 ~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          424 LFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             CCEECCTTCCEEEECC
T ss_pred             eEEEcCCCCCcEEEec
Confidence            9999999999999987

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=2.9e-21  Score=166.66  Aligned_cols=188  Identities=7%  Similarity=-0.042  Sum_probs=135.2

Q ss_pred             CCceEEEEecCCcEEEEEcccccccccc--ccceEEE----EEccCCCceEEEEEcCCCCEEE----EecCCCeEEEEEC
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAES--SCSTVKS----WNVCASGTIAFSKVDISEKFSL----FGGKGVEVNVWDL  191 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~--~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~----sg~~d~~i~iwd~  191 (326)
                      ..+.+++++.++ +++|+..........  ....+..    ........|.+++|+|++++|+    +|+.|+.|++||+
T Consensus        47 ~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~  125 (434)
T 2oit_A           47 KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDV  125 (434)
T ss_dssp             TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEH
T ss_pred             CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEc
Confidence            456788888777 888886532211000  0011111    1123356799999999999999    8999999999998


Q ss_pred             CCc--------eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE
Q 020454          192 DKC--------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA  263 (326)
Q Consensus       192 ~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~  263 (326)
                      ++.        +++......      ..|...|++++|+|. ++++|++++.||+|++||+++. ..+.....|...|++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~  197 (434)
T 2oit_A          126 RTFSNEAKQQKRPFAYHKLL------KDAGGMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTET-VKVCATLPSTVAVTS  197 (434)
T ss_dssp             HHHHCTTCSSCCCSEEEECC------CSGGGSEEEEEECSS-CTTEEEEEETTSCEEEEEESSS-EEEEEEECGGGCEEE
T ss_pred             cccccCCcCCcceeeeeecc------CCCCCceEEEEECCC-CCCEEEEEECCCeEEEEEcCCC-cceeeccCCCCceeE
Confidence            765        221111111      013467999999995 3569999999999999999976 445555567889999


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee------cceEEEEEECCCCCEEEEe
Q 020454          264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       264 v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~s~  319 (326)
                      ++|+|+|++|++|+.||.|++||++ ++....+..|.      ...|.+++|++++.++++.
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            9999999999999999999999998 66666665431      2389999999988777543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=2.3e-19  Score=149.52  Aligned_cols=265  Identities=11%  Similarity=0.059  Sum_probs=170.3

Q ss_pred             CeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccce-eeee
Q 020454           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDL-RVAI   91 (326)
Q Consensus        14 ~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~-~~~~   91 (326)
                      ..-+++...++.|++||..++     ++......+.  ... .+.+  +++++++++++. ++.|.+||+.+++. ...+
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~--~~~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTL-----EILNQITLGY--DFV-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTC-----CEEEEEECCC--CEE-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred             CEEEEEecCCCeEEEEeCccc-----ceeeeEEccC--Ccc-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence            355788889999999999877     4433333222  122 3333  445555665555 89999999988886 4444


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC---cEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      ..        +..+..++.+.+        ++..+++...++   .|.+|++....        .+....  .......+
T Consensus        80 ~~--------~~~~~~~~~~s~--------dg~~l~~~~~~~~~~~i~v~d~~~~~--------~~~~~~--~~~~~~~~  133 (331)
T 3u4y_A           80 QE--------GQSSMADVDITP--------DDQFAVTVTGLNHPFNMQSYSFLKNK--------FISTIP--IPYDAVGI  133 (331)
T ss_dssp             EE--------CSSCCCCEEECT--------TSSEEEECCCSSSSCEEEEEETTTTE--------EEEEEE--CCTTEEEE
T ss_pred             cc--------CCCCccceEECC--------CCCEEEEecCCCCcccEEEEECCCCC--------eEEEEE--CCCCccce
Confidence            32        223333355544        456677544443   89999976543        333333  24567899


Q ss_pred             EEcCCCCEEE-EecCCCe-EEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCC
Q 020454          169 KVDISEKFSL-FGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTS  245 (326)
Q Consensus       169 ~~~~~~~~l~-sg~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~  245 (326)
                      +|+|++++++ +...++. |.+|++.....+.......     +.....+..++|+|  ++++ ++++..++.|++||+.
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF-----ISGGTRPFNITFTP--DGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE-----ECSSSSEEEEEECT--TSSEEEEEETTTTEEEEEECS
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc-----ccCCCCccceEECC--CCCEEEEEeCCCCeEEEEECC
Confidence            9999997554 4455577 9999987543322211000     01123467889998  5554 4555678999999998


Q ss_pred             CCCCc---eeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeE--EEEEcce---ec---ceEEEEEECCCC
Q 020454          246 AQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL--LGCFIGK---CS---GSIRSIARHPTL  313 (326)
Q Consensus       246 ~~~~~---~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~--~~~~~~~---~~---~~v~~l~~~p~~  313 (326)
                      ++ +.   +..+..+ ..+..++|+|+|+++++++ .++.|.+||+.+++.  +..+..+   ..   .....++|+|++
T Consensus       207 ~~-~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  284 (331)
T 3u4y_A          207 NP-ENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTE  284 (331)
T ss_dssp             ST-TSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTS
T ss_pred             CC-cccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCC
Confidence            76 44   5555544 6678899999999887655 477899999999887  4443321   01   123568999999


Q ss_pred             CEEEEeccCc
Q 020454          314 PIIASCGFLE  323 (326)
Q Consensus       314 ~~l~s~s~D~  323 (326)
                      ++|+.++.|+
T Consensus       285 ~~l~v~~~~~  294 (331)
T 3u4y_A          285 TKLFISANIS  294 (331)
T ss_dssp             SEEEEEETTT
T ss_pred             CEEEEecCCC
Confidence            9887665543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1.8e-18  Score=145.13  Aligned_cols=264  Identities=11%  Similarity=0.027  Sum_probs=162.1

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec---CCcEEEEeccccceeeeecccCCCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLNGDLRVAISNAGDSG   98 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i~i~~~~~~~~~~~~~~~~~~~   98 (326)
                      .++.|.+|.+... .+.............+ .  .+.+  +++++ |++++.   ++.|.+|++.+++........    
T Consensus        14 ~~~~i~v~~~d~~-tg~~~~~~~~~~~~~p-~--~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~----   82 (347)
T 3hfq_A           14 TSQGIYQGTLDTT-AKTLTNDGLLAATQNP-T--YLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV----   82 (347)
T ss_dssp             SCCEEEEEEEETT-TTEEEEEEEEEECSCC-C--CEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE----
T ss_pred             CCCCEEEEEEcCC-CCeEEEeeeeeccCCc-c--eEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee----
Confidence            4556888888754 3333222222222111 1  2233  34455 554444   689999999766642221110    


Q ss_pred             CCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccC--------CCceEEEE
Q 020454           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCA--------SGTIAFSK  169 (326)
Q Consensus        99 ~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~  169 (326)
                        .+...+..+++.+        ++..+++++ .++.+.+|+++....     ...+.......        ...+.+++
T Consensus        83 --~~~~~p~~~a~sp--------dg~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~  147 (347)
T 3hfq_A           83 --APGTPPAYVAVDE--------ARQLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIHYTD  147 (347)
T ss_dssp             --EESCCCSEEEEET--------TTTEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred             --cCCCCCEEEEECC--------CCCEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCceEEE
Confidence              1224556677544        556677776 789999999864221     11222222211        12488999


Q ss_pred             EcCCCCEEEEecCCCeEEEEECC-Cceeeee--ecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeCC
Q 020454          170 VDISEKFSLFGGKGVEVNVWDLD-KCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS  245 (326)
Q Consensus       170 ~~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~~  245 (326)
                      ++|+++++++...++.|.+||+. +++....  ....        ....+..++|+|  ++++++ +...++.|.+|++.
T Consensus       148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~--------~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME--------AGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC--------TTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEE
T ss_pred             ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC--------CCCCCceEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence            99999977777788999999998 4443221  1111        112466789998  566444 46778999999987


Q ss_pred             CCCCc---eeEEeecC------CceEEEEecCCCCeEE-EEcCCCcEEEEECCC---CeEEEEEcceecceEEEEEECCC
Q 020454          246 AQRRP---VMSFDFRE------TPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       246 ~~~~~---~~~~~~~~------~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      .....   +..+....      ..+..++|+|+|++|+ +...++.|.+|++..   .+.+..+..+ ...+..++|+|+
T Consensus       218 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spd  296 (347)
T 3hfq_A          218 TQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPT  296 (347)
T ss_dssp             TTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTT
T ss_pred             CCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCC
Confidence            42111   22222221      3588899999999885 555689999999972   3555666655 567899999999


Q ss_pred             CCEEEEeccC
Q 020454          313 LPIIASCGFL  322 (326)
Q Consensus       313 ~~~l~s~s~D  322 (326)
                      +++|++++.+
T Consensus       297 g~~l~v~~~~  306 (347)
T 3hfq_A          297 EAFVVVVNQN  306 (347)
T ss_dssp             SSEEEEEETT
T ss_pred             CCEEEEEEcC
Confidence            9988888765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=4.6e-18  Score=142.04  Aligned_cols=266  Identities=10%  Similarity=0.063  Sum_probs=158.9

Q ss_pred             eeeeecCc-ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeeeecc
Q 020454           16 RALTFDSL-GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        16 ~l~~~~~~-G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      ++++++.+ |.|++|++... .+..+....+..+.   ....+.+  ++++++|++++ .++.|.+||+.++........
T Consensus        51 ~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~  124 (343)
T 1ri6_A           51 YLYVGVRPEFRVLAYRIAPD-DGALTFAAESALPG---SLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV  124 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTT-TCCEEEEEEEECSS---CCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeecCCCeEEEEEecCC-CCceeeccccccCC---CCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccccccc
Confidence            36666655 99999999832 22222322333222   1223333  45566676665 488999999943322222222


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEE--EEEccCCCceEEEEE
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVK--SWNVCASGTIAFSKV  170 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~  170 (326)
                      .      .....+.++.+.+        ++..+++++ .++.|.+|++......     ..+.  .+.......+..++|
T Consensus       125 ~------~~~~~~~~~~~s~--------dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  185 (343)
T 1ri6_A          125 V------EGLDGCHSANISP--------DNRTLWVPALKQDRICLFTVSDDGHL-----VAQDPAEVTTVEGAGPRHMVF  185 (343)
T ss_dssp             E------CCCTTBCCCEECT--------TSSEEEEEEGGGTEEEEEEECTTSCE-----EEEEEEEEECSTTCCEEEEEE
T ss_pred             c------cCCCCceEEEECC--------CCCEEEEecCCCCEEEEEEecCCCce-----eeecccccccCCCCCcceEEE
Confidence            1      1113455566544        455677666 8999999998642211     1122  334444567889999


Q ss_pred             cCCCCEEE-EecCCCeEEEEECCC--cee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE-EEeCCCeEEEEeC
Q 020454          171 DISEKFSL-FGGKGVEVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDT  244 (326)
Q Consensus       171 ~~~~~~l~-sg~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~-~~~~dg~v~iwd~  244 (326)
                      +|++++++ ++..++.|.+||+..  ++.  ..........   ......+..++|+|  ++++|+ +...++.|++||+
T Consensus       186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~s~--dg~~l~v~~~~~~~i~v~d~  260 (343)
T 1ri6_A          186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN---FSDTRWAADIHITP--DGRHLYACDRTASLITVFSV  260 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT---CCSCCCEEEEEECT--TSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc---ccccCCccceEECC--CCCEEEEEecCCCEEEEEEE
Confidence            99998665 455889999999954  332  2222211111   11124577899998  454555 5668999999998


Q ss_pred             CC--CC-CceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEE--ECCCCeE--EEEEcceecceEEEEEECCCCC
Q 020454          245 SA--QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRTGKL--LGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       245 ~~--~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iw--d~~~~~~--~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                      ..  +. +.+..+..+. .+..++|+|+|++|++++ .++.|.+|  |..+++.  +..+..  .....+++|.|+.+
T Consensus       261 ~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          261 SEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNAHEG  335 (343)
T ss_dssp             CTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEEEC-
T ss_pred             cCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--CCCCeeEEEEcccC
Confidence            83  21 2233444443 388999999999998877 67999999  4446643  444442  24566788877543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=3.9e-19  Score=145.22  Aligned_cols=213  Identities=11%  Similarity=0.039  Sum_probs=150.3

Q ss_pred             EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc-ccccccc
Q 020454           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-TKVSAES  149 (326)
Q Consensus        71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~-~~~~~~~  149 (326)
                      ++.|+.|++||+.+++......         +...+.++.+.+        ++..++++ .++.|++|++.. ..     
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~---------~~~~v~~~~~sp--------dg~~l~~~-~~~~i~~~d~~~~~~-----   74 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQ---------TPELFEAPNWSP--------DGKYLLLN-SEGLLYRLSLAGDPS-----   74 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEE---------ESSCCEEEEECT--------TSSEEEEE-ETTEEEEEESSSCCS-----
T ss_pred             CCcceeEEEEeCCCCceeeecc---------CCcceEeeEECC--------CCCEEEEE-cCCeEEEEeCCCCCC-----
Confidence            4678999999998877653332         235788788654        44556555 588999999865 33     


Q ss_pred             ccceEEEEEccCCCceEEEEEcCCCCEEEEec--CCCeEEEE--ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454          150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  225 (326)
                         ...+........+.+++|+|++++|++++  .++...||  ++.+++. ..+..          ...+..++|+|  
T Consensus        75 ---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~----------~~~~~~~~~sp--  138 (297)
T 2ojh_A           75 ---PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK----------NLPSYWHGWSP--  138 (297)
T ss_dssp             ---CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS----------SSSEEEEEECT--
T ss_pred             ---ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec----------CCCccceEECC--
Confidence               12222222245788999999999999988  33445555  4444432 22111          12377889998  


Q ss_pred             CCcEEE-EEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECC-CCeEEEEEcceecc
Q 020454          226 DHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR-TGKLLGCFIGKCSG  302 (326)
Q Consensus       226 ~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~-~~~~~~~~~~~~~~  302 (326)
                      +++.|+ ++..++.+++|++.........+..+...+.+++|+|++++|+.++ .++.+++|++. .+..+..+..| ..
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~  217 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AY  217 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SE
T ss_pred             CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-Cc
Confidence            455665 7888999999996533234566666778899999999999888655 58999999986 55566677776 78


Q ss_pred             eEEEEEECCCCCEEEEeccCc
Q 020454          303 SIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       303 ~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .+..++|+|++++|++++.|+
T Consensus       218 ~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          218 GDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             EEEEEEECTTSSEEEEEEEET
T ss_pred             ccCCeEECCCCCEEEEEEcCC
Confidence            999999999999999988763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=8.4e-18  Score=141.16  Aligned_cols=222  Identities=14%  Similarity=0.111  Sum_probs=159.1

Q ss_pred             CCCCeEEEEec-------CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCc
Q 020454           63 QNDPLLAVARK-------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGK  134 (326)
Q Consensus        63 ~~~~~l~~g~~-------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~  134 (326)
                      +.++++++++.       ++.|.+||..+++.+..+..-         ..+.++.+.+        +++.+ ++...++.
T Consensus        50 ~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~--------dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           50 QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINN--------TTQTLWFGNTVNSA  112 (353)
T ss_dssp             TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEET--------TTTEEEEEETTTTE
T ss_pred             CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECC--------CCCEEEEEecCCCE
Confidence            44556777663       578999999988887776541         2244455544        44544 55566799


Q ss_pred             EEEEEccccccccccccceEEEEEccCCC--------ceEEEEEcCCCCEEEEec--CCCeEEEEECCCceeeeeecCCC
Q 020454          135 ASMRSIEVTKVSAESSCSTVKSWNVCASG--------TIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPP  204 (326)
Q Consensus       135 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~  204 (326)
                      |.+||.....        .+..+......        .+..+.++|+++++++++  .++.|.+||+.+++.+..+..+.
T Consensus       113 v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  184 (353)
T 3vgz_A          113 VTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG  184 (353)
T ss_dssp             EEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred             EEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence            9999976543        33444443221        278899999998777665  57889999999998877765322


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee----cCCceEEEEecCCCCeEEEEcC-C
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNG-S  279 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~i~~v~~s~~~~~l~~g~~-d  279 (326)
                               ..+..++|+|  +++++++++.++.|.+||+.++ +.+..+..    +...+..++|+|+++++++++. +
T Consensus       185 ---------~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          185 ---------KMSTGLALDS--EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             ---------TTCCCCEEET--TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred             ---------CccceEEECC--CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence                     2355778988  5668899999999999999976 44555554    3456788999999998876665 5


Q ss_pred             CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec-cCcc
Q 020454          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-FLEA  324 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s-~D~~  324 (326)
                      +.|.+||+.+++.+..+..+ .  ...++|+|++++++.++ .|+.
T Consensus       253 ~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~dg~~l~v~~~~~~~  295 (353)
T 3vgz_A          253 AEVLVVDTRNGNILAKVAAP-E--SLAVLFNPARNEAYVTHRQAGK  295 (353)
T ss_dssp             SEEEEEETTTCCEEEEEECS-S--CCCEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCcEEEEEEcC-C--CceEEECCCCCEEEEEECCCCe
Confidence            89999999999998888754 2  36799999998655544 5554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=1.6e-18  Score=145.23  Aligned_cols=223  Identities=11%  Similarity=0.043  Sum_probs=152.8

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIE  141 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~  141 (326)
                      ..+.++++++.+++|.+||+.+++.+..+..       .....+..+.+.+        ++..+ ++...++.|.+|++.
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~s~--------dg~~~~v~~~~~~~i~~~d~~   73 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAP--------DNRTAYVLNNHYGDIYGIDLD   73 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECT--------TSSEEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEec-------CCCCCCceeEECC--------CCCEEEEEeCCCCcEEEEeCC
Confidence            3455788999999999999998887776653       1111345566543        44444 455678999999976


Q ss_pred             ccccccccccceEEEEEccC-----CCceEEEEEcCCCCEEEEecCC------------CeEEEEECCCceeeeeecCCC
Q 020454          142 VTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFSLFGGKG------------VEVNVWDLDKCEKIWTAKPPP  204 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~sg~~d------------~~i~iwd~~~~~~~~~~~~~~  204 (326)
                      ...        .+.......     ...+..++++|++++|++++.+            +.|.+||+.+++.......  
T Consensus        74 t~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--  143 (349)
T 1jmx_B           74 TCK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--  143 (349)
T ss_dssp             TTE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--
T ss_pred             CCc--------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--
Confidence            433        233333322     1237789999999999988865            8999999987543221111  


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC--------------------------
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--------------------------  258 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------------------  258 (326)
                           ...+..+.+++|+|  +++ +++++  +.|++||+.++ +.+..+..+.                          
T Consensus       144 -----~~~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          144 -----FPMPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             -----EECCSSCCCEEECT--TSC-EEEES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             -----ccCCCcccceeECC--CCc-EEEcc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence                 01123467888988  555 55554  34999999876 3343333221                          


Q ss_pred             ------------------------------------------CceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454          259 ------------------------------------------TPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGC  295 (326)
Q Consensus       259 ------------------------------------------~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~  295 (326)
                                                                ..+..++|+| ++++++++  ++.|.+||+.+++.+..
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~  290 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA  290 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence                                                      1345678889 99999988  88999999999998888


Q ss_pred             EcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          296 FIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       296 ~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +..  ...+.+++|+|++++|++++.|+.+
T Consensus       291 ~~~--~~~~~~~~~s~dg~~l~~~~~~~~v  318 (349)
T 1jmx_B          291 ANL--DHTYYCVAFDKKGDKLYLGGTFNDL  318 (349)
T ss_dssp             EEC--SSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             EcC--CCCccceEECCCCCEEEEecCCCeE
Confidence            763  3467899999999988888877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=5.5e-18  Score=155.53  Aligned_cols=267  Identities=13%  Similarity=0.051  Sum_probs=163.8

Q ss_pred             ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccc-----cceeeeeccc
Q 020454           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNA   94 (326)
Q Consensus        20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-----~~~~~~~~~~   94 (326)
                      ...++.+++||+.++     +........ ..  +..+  .+++++++|+++ .++.|.+|++.+     ++........
T Consensus        97 ~~~~~~i~~~d~~~~-----~~~~l~~~~-~~--~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~  165 (706)
T 2z3z_A           97 LFTQGGLVGFDMLAR-----KVTYLFDTN-EE--TASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG  165 (706)
T ss_dssp             EEETTEEEEEETTTT-----EEEEEECCT-TC--CTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred             EEECCEEEEEECCCC-----ceEEccCCc-cc--ccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCC
Confidence            335699999999876     332222211 11  1112  345667778874 789999999987     6654332210


Q ss_pred             CCC------CCCCCCCCeeeeecccccccccCCCCceEEEEe---------------------------------cCCcE
Q 020454           95 GDS------GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------------------------------TKGKA  135 (326)
Q Consensus        95 ~~~------~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~---------------------------------~~g~v  135 (326)
                      ...      ..+.+...+.++.+.+        ++..|++++                                 .+..|
T Consensus       166 ~~~~~~g~~~~~ee~~~~~~~~~Sp--------Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          166 TETLVYGQAVHQREFGIEKGTFWSP--------KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             BTTEEESSCCGGGCTTCCCSEEECT--------TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             CCCeEcccchhhhhcCCCceEEECC--------CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            000      0000001135566544        566777776                                 33566


Q ss_pred             EEEEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCC-----eEEEEECCCceeeeeec-CCCCCCC
Q 020454          136 SMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAK-PPPKNSL  208 (326)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~-~~~~~~~  208 (326)
                      ++|++....        ...+.. ..+...+..++|+|++++|++++.++     .|.+||+.+++....+. ...... 
T Consensus       238 ~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~-  308 (706)
T 2z3z_A          238 GIYHLATGK--------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY-  308 (706)
T ss_dssp             EEEETTTTE--------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC-
T ss_pred             EEEECCCCc--------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe-
Confidence            777765322        111111 12335688999999999998877665     89999999883322221 111100 


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEE-EcCCC----cE
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYI-GNGSG----DL  282 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~-g~~dg----~v  282 (326)
                          ...+..+.|+|..+++++++++.|+.++||++......+..+..+...+.. ++|+|+++.|+. ++.++    .|
T Consensus       309 ----~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          309 ----VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             ----CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             ----ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence                012356789873356688889999999999876322456667677777876 799999988874 44554    67


Q ss_pred             EEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      +.||+.+++ +..+. + ...+.+++|+|++++|+..+.
T Consensus       385 ~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          385 YCIDIKGGK-TKDLT-P-ESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EEEETTCCC-CEESC-C-SSSEEEEEECTTSSEEEEEEE
T ss_pred             EEEEcCCCC-ceecc-C-CCceEEEEECCCCCEEEEEec
Confidence            777887765 33333 4 667999999999998877644

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=1.9e-18  Score=159.51  Aligned_cols=233  Identities=7%  Similarity=-0.028  Sum_probs=152.0

Q ss_pred             eeeCCCCCeEEEEecCCcEEEEecccc---ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454           59 IDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (326)
Q Consensus        59 ~~~~~~~~~l~~g~~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v  135 (326)
                      ..+++++++|++++. +.|.+||+.++   +. ..+.        .+...+..+.+.+        ++..|+.++ ++.|
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~--------~~~~~~~~~~~SP--------DG~~la~~~-~~~i  174 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLT--------HGEGFATDAKLSP--------KGGFVSFIR-GRNL  174 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSC-CBCC--------CSSSCEEEEEECT--------TSSEEEEEE-TTEE
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceE-EEcc--------cCCcccccccCCC--------CCCEEEEEe-CCcE
Confidence            345667778888886 99999999877   43 2222        2335677777654        445566555 6799


Q ss_pred             EEEEccccccccccccceEEEEEc-------cCCCceEEEEEcCCCCEEEEecCCC------------------------
Q 020454          136 SMRSIEVTKVSAESSCSTVKSWNV-------CASGTIAFSKVDISEKFSLFGGKGV------------------------  184 (326)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~d~------------------------  184 (326)
                      ++|++...........+.-.+..-       .....+..+.|+|++++|++++.|+                        
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            999976532110000000000000       0001247799999999999887665                        


Q ss_pred             ---------eEEEEECCC-ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----CCeEEEEeCCCCCC
Q 020454          185 ---------EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRR  249 (326)
Q Consensus       185 ---------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----dg~v~iwd~~~~~~  249 (326)
                               .|.+||+.+ ++........       .+...+..++| |  +++.|++.+.     +..|++||+.++ +
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~-p--Dg~~l~~~~~~~~~~~~~i~~~d~~~g-~  323 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQWIDLGK-------EQDIYLARVNW-R--DPQHLSFQRQSRDQKKLDLVEVTLASN-Q  323 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCEEECCCS-------CSSEEEEEEEE-E--ETTEEEEEEEETTSSEEEEEEEETTTC-C
T ss_pred             CCCCCCCeeEEEEEECCCCCceEEecCCC-------CcceEEEEEEe-C--CCCEEEEEEecccCCeEEEEEEECCCC-c
Confidence                     788899987 6654332110       12356889999 8  5667776543     578999999977 4


Q ss_pred             ceeEEeecCC----ceEEEEecCCCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEEE-EECCCCCEEEE-eccC
Q 020454          250 PVMSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSI-ARHPTLPIIAS-CGFL  322 (326)
Q Consensus       250 ~~~~~~~~~~----~i~~v~~s~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~l-~~~p~~~~l~s-~s~D  322 (326)
                      ....+..+..    .+..++|+|||+++++++.+|.++||.+. +++ ...+..| ...|.++ .|+|+++.|+. ++.|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          324 QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSS
T ss_pred             eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCC
Confidence            4444444432    45688999999988899999988888765 445 6677776 7788887 59999987654 4444


Q ss_pred             c
Q 020454          323 E  323 (326)
Q Consensus       323 ~  323 (326)
                      +
T Consensus       402 ~  402 (741)
T 2ecf_A          402 S  402 (741)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=1.1e-18  Score=160.23  Aligned_cols=271  Identities=10%  Similarity=0.028  Sum_probs=167.8

Q ss_pred             eeeeeecCcccEEEEEecCCcCCC-cceeeecc-------CCC-----CCceEEEEEeeeCCCCCeEEEEecCCcEEEEe
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWG-------DPH-----SSNCVLAASIDDSQNDPLLAVARKNGLTDILN   81 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~-~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~   81 (326)
                      -++++...+| | +||+.++. .. ..+. ...       ..+     ....+..+.+..  + +.++.+ .++.|++||
T Consensus        36 ~~~~~~~~~~-i-~~d~~tg~-~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d-~~~~~~-~~~~i~~~d  107 (706)
T 2z3z_A           36 DNYVFIEGDD-L-VFNKANGK-SAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAG--R-GLVVLF-TQGGLVGFD  107 (706)
T ss_dssp             TEEEEEETTE-E-EEEC--------CEEE-EHHHHHTTC-----------CCCEEEEETT--T-TEEEEE-ETTEEEEEE
T ss_pred             CeEEEEeCCc-E-EEECCCCc-EeeEEee-chhHhhhhccchhccccccccCceeEEECC--C-CeEEEE-ECCEEEEEE
Confidence            4677777888 7 99998771 10 1111 110       000     012344555543  3 345555 569999999


Q ss_pred             ccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc-----cccccccccceEEE
Q 020454           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-----TKVSAESSCSTVKS  156 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~-----~~~~~~~~~~~~~~  156 (326)
                      +.+++......         +...+..+.+.+        ++..++. ..++.|++|++..     .........+.-.+
T Consensus       108 ~~~~~~~~l~~---------~~~~~~~~~~Sp--------dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A          108 MLARKVTYLFD---------TNEETASLDFSP--------VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             TTTTEEEEEEC---------CTTCCTTCEECT--------TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             CCCCceEEccC---------CcccccCCcCCC--------CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            98876643322         123455566544        4455655 5789999999875     32110000000000


Q ss_pred             EE-----ccCCCceEEEEEcCCCCEEEEec---------------------------------CCCeEEEEECCCceeee
Q 020454          157 WN-----VCASGTIAFSKVDISEKFSLFGG---------------------------------KGVEVNVWDLDKCEKIW  198 (326)
Q Consensus       157 ~~-----~~~~~~v~~~~~~~~~~~l~sg~---------------------------------~d~~i~iwd~~~~~~~~  198 (326)
                      ..     -.+...+.++.|+|++++|++++                                 .+..|.+||+.+++...
T Consensus       170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~  249 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY  249 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred             EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence            00     00011257899999999999887                                 44679999999887544


Q ss_pred             eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-----eEEEEeCCCCCCceeEEe--ecCC---ceEEEEecC
Q 020454          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFD--FRET---PIKAVAEEP  268 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~--~~~~---~i~~v~~s~  268 (326)
                      .....       .+...+..++|+|  +++.|++++.++     .|++||+.+++ ....+.  .+..   .+..++|+|
T Consensus       250 ~~~~~-------~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp  319 (706)
T 2z3z_A          250 LQTGE-------PKEKFLTNLSWSP--DENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLP  319 (706)
T ss_dssp             CCCCS-------CTTCEEEEEEECT--TSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECT
T ss_pred             eccCC-------CCceeEeeEEEEC--CCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeec
Confidence            32211       1234688999998  666888877665     99999998762 233332  2222   246789999


Q ss_pred             --CCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEE-EEECCCCCEEEEeccC
Q 020454          269 --DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFL  322 (326)
Q Consensus       269 --~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D  322 (326)
                        +|+++++++.+|.+++|++. +++.+..+..+ ...+.+ ++|+|+++.|+.++.+
T Consensus       320 ~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          320 GSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             TCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESS
T ss_pred             CCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecC
Confidence              99999999999999999886 67777777776 777877 7999999877665544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=3e-17  Score=136.66  Aligned_cols=218  Identities=9%  Similarity=-0.006  Sum_probs=151.0

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEEEcccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVT  143 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~  143 (326)
                      ..++++++.++.|.+||..+++.+..+..        +...+ ++.+.+        ++..+++++. ++.|.+||+...
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~-~~~~s~--------dg~~l~~~~~~~~~i~~~d~~~~   72 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITL--------GYDFV-DTAITS--------DCSNVVVTSDFCQTLVQIETQLE   72 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEEC--------CCCEE-EEEECS--------SSCEEEEEESTTCEEEEEECSSS
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEc--------cCCcc-eEEEcC--------CCCEEEEEeCCCCeEEEEECCCC
Confidence            33578888899999999998888766652        12344 677544        4455655555 889999997653


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC---eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      ..       ....... ...+..+++++|++++|+++..++   .|.+||+.+++.+..+...          ....+++
T Consensus        73 ~~-------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----------~~~~~~~  134 (331)
T 3u4y_A           73 PP-------KVVAIQE-GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----------YDAVGIA  134 (331)
T ss_dssp             SC-------EEEEEEE-CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC----------TTEEEEE
T ss_pred             ce-------eEEeccc-CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC----------CCccceE
Confidence            31       1223322 223344499999999998655553   8999999998877665432          2357889


Q ss_pred             EeecCCCc-EEEEEeCCCe-EEEEeCCCCCCce---eEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeE--
Q 020454          221 FLSIDDHR-KFVAGTNDHQ-VRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL--  292 (326)
Q Consensus       221 ~~p~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~---~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~--  292 (326)
                      |+|  +++ ++++...++. |.+|++.......   ............++|+|+|++++ ++..++.|++||+.+++.  
T Consensus       135 ~sp--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          135 ISP--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             ECT--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             ECC--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            998  454 4555566678 9999988542211   11113345678999999999766 555689999999999887  


Q ss_pred             -EEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          293 -LGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       293 -~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                       +..+..  ...+..++|+|++++|+.++.
T Consensus       213 ~~~~~~~--~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          213 LLNAVGT--NNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             EEEEEEC--SSCCCCEEECTTSSEEEEECS
T ss_pred             eeeeccC--CCCCceEEECCCCCEEEEEEc
Confidence             777763  467789999999997765543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=2.1e-18  Score=148.78  Aligned_cols=205  Identities=13%  Similarity=0.054  Sum_probs=135.3

Q ss_pred             CCCeEEEEecCCcEEEEecccccee-------eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE----EEecC
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLR-------VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL----TCTTK  132 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~----~~~~~  132 (326)
                      ...++++++.+| |++|+...-...       ...........-.+...|.++.+.+        ++..|+    +++.|
T Consensus        47 ~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--------dg~~lav~~~sgs~d  117 (434)
T 2oit_A           47 KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC--------DNLTLSACMMSSEYG  117 (434)
T ss_dssp             TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT--------TSCEEEEEEEETTTE
T ss_pred             CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC--------CCCEEEEEEeccCCC
Confidence            455788888888 899876421110       0000000000002235688888755        556777    67889


Q ss_pred             CcEEEEEccccccccccccceEEEEEc--cCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      +.|++||+.............+.....  .+...|.+++|+|+ +++|++++.|++|++||++++..+.....|      
T Consensus       118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~------  191 (434)
T 2oit_A          118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS------  191 (434)
T ss_dssp             EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG------
T ss_pred             ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC------
Confidence            999999987541100000011112221  24678999999998 799999999999999999988665544332      


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-------CCceEEEEecCCCCeEEE-EcCCC-
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------ETPIKAVAEEPDSFNIYI-GNGSG-  280 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------~~~i~~v~~s~~~~~l~~-g~~dg-  280 (326)
                         ...|++++|+|  ++++|++++.||+|++||++ + .....+..+       ...+.+++|++++.++++ +..+| 
T Consensus       192 ---~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          192 ---TVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             ---GGCEEEEEECT--TSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             ---CCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence               25689999998  57799999999999999998 4 334444433       237999999998877763 33443 


Q ss_pred             -----cEEEEECCCC
Q 020454          281 -----DLASVDIRTG  290 (326)
Q Consensus       281 -----~v~iwd~~~~  290 (326)
                           .+++|+++..
T Consensus       265 ~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          265 LETSPDVVMALLPKK  279 (434)
T ss_dssp             SSSCCEEEEEECCCT
T ss_pred             cCCCCceEEEEeccC
Confidence                 3899999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=7.1e-16  Score=130.02  Aligned_cols=271  Identities=10%  Similarity=0.019  Sum_probs=157.8

Q ss_pred             eeeeecCc----ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeee
Q 020454           16 RALTFDSL----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVA   90 (326)
Q Consensus        16 ~l~~~~~~----G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~   90 (326)
                      +|++++.+    |.|++|++... .+..+.........  .....+++    .+++|+++. .++.|.+|++.....+..
T Consensus        63 ~l~~~~~~~~~~~~v~~~~~~~~-~g~~~~~~~~~~~~--~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~  135 (361)
T 3scy_A           63 FVYSVNEFSKDQAAVSAFAFDKE-KGTLHLLNTQKTMG--ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLP  135 (361)
T ss_dssp             EEEEEECCSSTTCEEEEEEEETT-TTEEEEEEEEECSS--SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCS
T ss_pred             EEEEEEccCCCCCcEEEEEEeCC-CCcEEEeeEeccCC--CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcc
Confidence            46666654    89999999863 23333332222122  22223333    344566555 689999999964433222


Q ss_pred             ecc---cC---CCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccc-c---ceEEEEEc
Q 020454           91 ISN---AG---DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESS-C---STVKSWNV  159 (326)
Q Consensus        91 ~~~---~~---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~-~---~~~~~~~~  159 (326)
                      +..   ..   +.+.......+.++.+.+        ++..++++ ..++.+.+|+++......... -   +.......
T Consensus       136 ~~~~~~~~g~~~~~~~~~~~~~~~~~~sp--------dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          136 ASDVIEFKGSGPDKERQTMPHLHCVRITP--------DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CSEEEECCCCCSCTTTCSSCCEEEEEECT--------TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             cceeEEccCCCCCccccCCCcceEEEECC--------CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            211   00   000011122334566544        45555554 458899999987533100000 0   01123444


Q ss_pred             cCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-
Q 020454          160 CASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-  235 (326)
Q Consensus       160 ~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-  235 (326)
                      ........++|+|+++++++++ .++.|.+||+.+++.  +........      .......++|+|  ++++|+++.. 
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~------~~~~~~~i~~sp--dg~~l~v~~~~  279 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV------NAQGSGDIHLSP--DGKYLYASNRL  279 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS------CCCCEEEEEECT--TSSEEEEEECS
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC------CCCCcccEEECC--CCCEEEEECCC
Confidence            4566788999999999877666 689999999987654  222222111      113357889998  5667766555 


Q ss_pred             -CCeEEEEeCCCC-CC--ceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEE--ECCCCeEEEEEcceecceEEEEE
Q 020454          236 -DHQVRLYDTSAQ-RR--PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRTGKLLGCFIGKCSGSIRSIA  308 (326)
Q Consensus       236 -dg~v~iwd~~~~-~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iw--d~~~~~~~~~~~~~~~~~v~~l~  308 (326)
                       ++.|.+|++... ..  .+..+.. ...+..++|+|+|++|++++ .++.|.+|  |..++++...........+.+|.
T Consensus       280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~  358 (361)
T 3scy_A          280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK  358 (361)
T ss_dssp             SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred             CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence             489999998621 12  2333433 45678999999999998777 67899996  55577765433221255788888


Q ss_pred             EC
Q 020454          309 RH  310 (326)
Q Consensus       309 ~~  310 (326)
                      |.
T Consensus       359 ~~  360 (361)
T 3scy_A          359 FV  360 (361)
T ss_dssp             EE
T ss_pred             Ec
Confidence            85

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.81  E-value=6.2e-18  Score=156.01  Aligned_cols=242  Identities=13%  Similarity=0.031  Sum_probs=161.0

Q ss_pred             eCCCCCeEEEEec-CC-----cEEEEeccccceeeeecccCCCC----------CC------CCCCCeeeeecccccccc
Q 020454           61 DSQNDPLLAVARK-NG-----LTDILNPLNGDLRVAISNAGDSG----------AQ------PEDDGIVGLHLFKRQREE  118 (326)
Q Consensus        61 ~~~~~~~l~~g~~-dg-----~i~i~~~~~~~~~~~~~~~~~~~----------~~------~~~~~i~~l~~~~~~~~~  118 (326)
                      +++++++|++++. ||     .|++||+.+++....+......+          ..      .+...+..+.+.+     
T Consensus        44 ~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp-----  118 (741)
T 2ecf_A           44 VAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP-----  118 (741)
T ss_dssp             ECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT-----
T ss_pred             EecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC-----
Confidence            3566778999988 88     99999998887655443211000          00      0001245566544     


Q ss_pred             cCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee
Q 020454          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (326)
Q Consensus       119 ~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  198 (326)
                         ++..|++++. +.|++|++......   .  ...+  ..+...+..++|+|+|++|+.++ ++.|.+||+.+++...
T Consensus       119 ---Dg~~l~~~~~-~~i~~~d~~~~~~~---~--~~~l--~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          119 ---DAQRLLFPLG-GELYLYDLKQEGKA---A--VRQL--THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             ---TSSEEEEEET-TEEEEEESSSCSTT---S--CCBC--CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             ---CCCEEEEEeC-CcEEEEECCCCCcc---e--EEEc--ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence               5556666665 99999998754100   0  0001  12245789999999999999876 4699999999877654


Q ss_pred             eecCCCCCCCCcCCCC--------ceeeeEEeecCCCcEEEEEeCCC---------------------------------
Q 020454          199 TAKPPPKNSLGIFTPT--------WFTSAAFLSIDDHRKFVAGTNDH---------------------------------  237 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~~l~~~~~dg---------------------------------  237 (326)
                      ........ .....+.        .+.+++|+|  ++++|++++.|+                                 
T Consensus       187 ~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          187 LTADGSTT-IGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             CCCCCCSS-EEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             eccCCccc-eeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            43322110 0000011        146789998  677888887665                                 


Q ss_pred             eEEEEeCCC-CCCceeEEe--ecCCceEEEEecCCCCeEEEEcC-----CCcEEEEECCCCeEEEEEcceecc----eEE
Q 020454          238 QVRLYDTSA-QRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRTGKLLGCFIGKCSG----SIR  305 (326)
Q Consensus       238 ~v~iwd~~~-~~~~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~-----dg~v~iwd~~~~~~~~~~~~~~~~----~v~  305 (326)
                      .|++||+.+ + +......  .+...+..++| |||++|++++.     +..|++||+.+++....+..+ ..    .+.
T Consensus       264 ~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~  340 (741)
T 2ecf_A          264 KLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-SPTWVPLHN  340 (741)
T ss_dssp             EEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-CSSCCCCCS
T ss_pred             EEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-CCCcCCcCC
Confidence            889999987 6 3332221  35678899999 99999996653     567999999999887777655 33    456


Q ss_pred             EEEECCCCCEEEEeccCccC
Q 020454          306 SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++|+|+++++++++.||..
T Consensus       341 ~~~~spdg~~~~~~~~~g~~  360 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGFQ  360 (741)
T ss_dssp             CCEECTTSCEEEEECTTSSC
T ss_pred             ceEECCCCeEEEEecCCCcc
Confidence            89999999999999988753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=3.5e-16  Score=131.91  Aligned_cols=267  Identities=10%  Similarity=0.038  Sum_probs=161.4

Q ss_pred             eeeeeec----CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecC----CcEEEEeccc--
Q 020454           15 LRALTFD----SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN----GLTDILNPLN--   84 (326)
Q Consensus        15 ~~l~~~~----~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d----g~i~i~~~~~--   84 (326)
                      .+++.|+    .++.|.+|++... .+..+..... .. .....  +.  .++++++|++++.+    +.|.+|++..  
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~-~g~~~~~~~~-~~-~~p~~--l~--~spdg~~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEE-TGESLPLSDA-EV-ANPSY--LI--PSADGKFVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETT-TCCEEEEEEE-EC-SCCCS--EE--ECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCC-CCCEEEeecc-cC-CCCce--EE--ECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence            5667774    4568999998754 3433333333 11 11111  22  24556788888875    8999998865  


Q ss_pred             cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEcc---
Q 020454           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC---  160 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~---  160 (326)
                      +++ ..+....     .+......+.+          ++..++++. .++.+.+|++........    ........   
T Consensus        87 g~~-~~~~~~~-----~~~~~p~~~~~----------dg~~l~~~~~~~~~v~~~~~~~~g~~~~----~~~~~~~~g~~  146 (361)
T 3scy_A           87 GTL-HLLNTQK-----TMGADPCYLTT----------NGKNIVTANYSGGSITVFPIGQDGALLP----ASDVIEFKGSG  146 (361)
T ss_dssp             TEE-EEEEEEE-----CSSSCEEEEEE----------CSSEEEEEETTTTEEEEEEBCTTSCBCS----CSEEEECCCCC
T ss_pred             CcE-EEeeEec-----cCCCCcEEEEE----------CCCEEEEEECCCCEEEEEEeCCCCcCcc----cceeEEccCCC
Confidence            443 2222110     12234455654          234455554 688999999875332111    11111111   


Q ss_pred             ------CCCceEEEEEcCCCCEEEE-ecCCCeEEEEECCCcee------ee------eecCCCCCCCCcCCCCceeeeEE
Q 020454          161 ------ASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEK------IW------TAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       161 ------~~~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~~~------~~------~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                            ....+.+++++|++++|++ ...++.|.+|++.....      +.      ....        .....+..++|
T Consensus       147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~  218 (361)
T 3scy_A          147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--------APGSGPRHLIF  218 (361)
T ss_dssp             SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--------CTTCCEEEEEE
T ss_pred             CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec--------CCCCCCeEEEE
Confidence                  1224688999999986655 44588999999875431      11      1111        11234678999


Q ss_pred             eecCCCcEEEEEe-CCCeEEEEeCCCCCCc--eeEEee---cCCceEEEEecCCCCeEEEEcCC--CcEEEEECC--CCe
Q 020454          222 LSIDDHRKFVAGT-NDHQVRLYDTSAQRRP--VMSFDF---RETPIKAVAEEPDSFNIYIGNGS--GDLASVDIR--TGK  291 (326)
Q Consensus       222 ~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~--~~~~~~---~~~~i~~v~~s~~~~~l~~g~~d--g~v~iwd~~--~~~  291 (326)
                      +|  +++++++++ .++.|.+||+.++ ..  +..+..   +......++|+|+|++|+++..+  +.|.+|++.  +++
T Consensus       219 sp--dg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~  295 (361)
T 3scy_A          219 NS--DGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT  295 (361)
T ss_dssp             CT--TSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred             cC--CCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence            98  566666665 6899999998854 21  222221   22346799999999999766654  899999996  454


Q ss_pred             --EEEEEcceecceEEEEEECCCCCEEEEecc
Q 020454          292 --LLGCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       292 --~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                        .+..+..  ...+.+++|+|++++|++++.
T Consensus       296 ~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          296 LTKVGYQLT--GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             EEEEEEEEC--SSCCCEEEECTTSCEEEEEET
T ss_pred             EEEeeEecC--CCCCceEEECCCCCEEEEEEC
Confidence              3333432  346789999999998888874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=1.1e-17  Score=153.90  Aligned_cols=271  Identities=8%  Similarity=-0.012  Sum_probs=166.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCC-ceEEEEEeeeCCCCCeEEEEecC---------CcEEEEeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKN---------GLTDILNPLN   84 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d---------g~i~i~~~~~   84 (326)
                      -+++..+.+|.|++||+.++     +.......+... ..+..+.  .++++++|++++.+         +.|.+||+.+
T Consensus        28 g~~~~~~~dg~i~~~d~~~g-----~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  100 (723)
T 1xfd_A           28 TEFIYREQKGTVRLWNVETN-----TSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (723)
T ss_dssp             SCBCCCCSSSCEEEBCGGGC-----CCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CcEEEEeCCCCEEEEECCCC-----cEEEEeccccccccccceEE--ECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence            34556688999999999877     222233222211 1122333  35567789988775         7888999988


Q ss_pred             cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCC--
Q 020454           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--  162 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--  162 (326)
                      ++. ..+...     ..+...+..+.+.+        ++..|+.++. +.|++|++....        ..++......  
T Consensus       101 ~~~-~~l~~~-----~~~~~~~~~~~~SP--------dG~~la~~~~-~~i~~~~~~~g~--------~~~~~~~~~~~~  157 (723)
T 1xfd_A          101 GDP-QSLDPP-----EVSNAKLQYAGWGP--------KGQQLIFIFE-NNIYYCAHVGKQ--------AIRVVSTGKEGV  157 (723)
T ss_dssp             CCC-EECCCT-----TCCSCCCSBCCBCS--------STTCEEEEET-TEEEEESSSSSC--------CEEEECCCBTTT
T ss_pred             Cce-EeccCC-----ccccccccccEECC--------CCCEEEEEEC-CeEEEEECCCCc--------eEEEecCCCCCc
Confidence            775 333221     12223466566544        5556766665 889999876433        1122211111  


Q ss_pred             ---------------CceEEEEEcCCCCEEEEecCCC----------------------------------eEEEEECCC
Q 020454          163 ---------------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDK  193 (326)
Q Consensus       163 ---------------~~v~~~~~~~~~~~l~sg~~d~----------------------------------~i~iwd~~~  193 (326)
                                     ..+..++|+|++++|++++.|+                                  .|.+||+.+
T Consensus       158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~  237 (723)
T 1xfd_A          158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG  237 (723)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred             eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence                           1237899999999999887543                                  789999988


Q ss_pred             ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----CCeEEEEeCCCCCCceeEEee-cCCce----EEE
Q 020454          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDF-RETPI----KAV  264 (326)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~-~~~~i----~~v  264 (326)
                      ++....+..+...   ..+...+..++|+|  +++++++...    +..|++||+.++ +....+.. +...+    ..+
T Consensus       238 ~~~~~~l~~~~~~---~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          238 PTHDLEMMPPDDP---RMREYYITMVKWAT--STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             SCCCEECCCCCCG---GGSSEEEEEEEESS--SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCC
T ss_pred             CceeEEeeCCccC---CCccceeEEEEEeC--CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCc
Confidence            7754444332100   11235688999998  6667766542    368999999876 43433333 33333    378


Q ss_pred             EecCCCCeEEE--EcCCC------cEEEEE-CCCCe--EEEEEcceecceEEE-EEECCCCCEEEEeccC
Q 020454          265 AEEPDSFNIYI--GNGSG------DLASVD-IRTGK--LLGCFIGKCSGSIRS-IARHPTLPIIASCGFL  322 (326)
Q Consensus       265 ~~s~~~~~l~~--g~~dg------~v~iwd-~~~~~--~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D  322 (326)
                      +|+|||+.|+.  +..++      .|++|| ..+++  ....+..+ ...+.. ++|+|+++.|+..+.+
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESS
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcC
Confidence            99999998774  45667      577777 34444  14444433 334544 6999999998776655

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=1.4e-17  Score=158.99  Aligned_cols=263  Identities=11%  Similarity=0.012  Sum_probs=177.6

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      .+++++.+|.+++|.+... .+..+   ...... ....  ..+.  +++++|+.+ .++.|.+|++...++ ..+....
T Consensus       216 l~~~~~~dg~~~l~~~~~~-g~~~~---~l~~~~-~~~~--~~~S--pDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~  284 (1045)
T 1k32_A          216 IYFITDIDGFGQIYSTDLD-GKDLR---KHTSFT-DYYP--RHLN--TDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGD  284 (1045)
T ss_dssp             EEEEECTTSSCEEEEEETT-SCSCE---ECCCCC-SSCE--EEEE--ESSSCEEEE-ETTEEEEECTTTCCE-EECCCCC
T ss_pred             EEEEEeccCceEEEEEeCC-CCcce---EecCCC-Ccce--eeEc--CCCCEEEEE-eCCEEEEecCCceEe-eeeccCc
Confidence            3456778899999998753 12111   122111 1222  2333  345567776 589999999954433 2322100


Q ss_pred             CCC---CCCCCCCeeeeecc-cccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCC-ceEEEEE
Q 020454           96 DSG---AQPEDDGIVGLHLF-KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-TIAFSKV  170 (326)
Q Consensus        96 ~~~---~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  170 (326)
                      ...   ...+...+..+.+. +        ++..++.++ ++.+.+|++....         .+.. ..+.. .+..++|
T Consensus       285 ~~~~~~~~~~~~~v~~~~~S~p--------dG~~la~~~-~~~i~~~~~~~~~---------~~~~-~~~~~~~~~~~~~  345 (1045)
T 1k32_A          285 LESPEDRIISIPSKFAEDFSPL--------DGDLIAFVS-RGQAFIQDVSGTY---------VLKV-PEPLRIRYVRRGG  345 (1045)
T ss_dssp             CCBCCSEEEECGGGGEEEEEEC--------GGGCEEEEE-TTEEEEECTTSSB---------EEEC-SCCSCEEEEEECS
T ss_pred             ccccccccccccccceeeecCC--------CCCEEEEEE-cCEEEEEcCCCCc---------eEEc-cCCCcceEEeeeE
Confidence            000   00012246666665 4        445666665 8889999865322         1111 12334 7889999


Q ss_pred             cCCCCEEEEecCCCeEE-EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          171 DISEKFSLFGGKGVEVN-VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      + +++.|++++.+..+. +||+.+++.... ..+         ...+..++|+|  ++++|++++.++.|++||+.++ +
T Consensus       346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~---------~~~~~~~~~Sp--DG~~la~~~~~~~v~~~d~~tg-~  411 (1045)
T 1k32_A          346 D-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EEN---------LGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETG-K  411 (1045)
T ss_dssp             S-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCC---------CCSEEEEEECT--TSSEEEEEETTSEEEEEETTTC-C
T ss_pred             c-CCCeEEEEECCCceEEEEECCCCCceEe-cCC---------ccceeeeEECC--CCCEEEEECCCCeEEEEECCCC-c
Confidence            9 999898888888888 999887654322 222         24578999998  6779999999999999999976 4


Q ss_pred             ceeEEeecCCceEEEEecCCCCeEEEEcCCC----------cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----------DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       250 ~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg----------~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      .......+...+..++|+|||++|++++.++          .|++||+.+++ +..+..| ...+..++|+|++++|+.+
T Consensus       412 ~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~-~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          412 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE-NSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS-SSBEEEEEECTTSCEEEEE
T ss_pred             eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC-CcccCCceEcCCCCEEEEE
Confidence            4555557888899999999999999777654          89999999887 5667776 7889999999999999988


Q ss_pred             ccCcc
Q 020454          320 GFLEA  324 (326)
Q Consensus       320 s~D~~  324 (326)
                      +.++.
T Consensus       490 s~~~~  494 (1045)
T 1k32_A          490 SYRSL  494 (1045)
T ss_dssp             ESCCC
T ss_pred             ecccC
Confidence            87653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.79  E-value=1.6e-16  Score=133.20  Aligned_cols=252  Identities=12%  Similarity=0.133  Sum_probs=149.6

Q ss_pred             eeeeecC---cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEecc-ccceeee
Q 020454           16 RALTFDS---LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPL-NGDLRVA   90 (326)
Q Consensus        16 ~l~~~~~---~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~-~~~~~~~   90 (326)
                      ++++++.   ++.|++|++.++   ..+.............  .+.+  ++++++|++++ .++.|.+|++. ++.. ..
T Consensus        52 ~l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~--~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~-~~  123 (347)
T 3hfq_A           52 CLYSVDKEDDEGGIAAWQIDGQ---TAHKLNTVVAPGTPPA--YVAV--DEARQLVYSANYHKGTAEVMKIAADGAL-TL  123 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEETT---EEEEEEEEEEESCCCS--EEEE--ETTTTEEEEEETTTTEEEEEEECTTSCE-EE
T ss_pred             eEEEEEecCCCceEEEEEecCC---cEEEeeeeecCCCCCE--EEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCe-ee
Confidence            4665554   689999999765   1112222111122222  2333  34556777777 78999999995 3332 22


Q ss_pred             ecccCCCC----CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454           91 ISNAGDSG----AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (326)
Q Consensus        91 ~~~~~~~~----~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (326)
                      +.......    .......+.++.+.+        ++..+++...++.|.+|+++....     ...+............
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~sp--------dg~l~v~~~~~~~v~~~~~~~~g~-----~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTP--------DNRLAVIDLGSDKVYVYNVSDAGQ-----LSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECT--------TSCEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCTTCCEE
T ss_pred             cceeecCCCCCCccccCCCceEEEECC--------CCcEEEEeCCCCEEEEEEECCCCc-----EEEeeeEEcCCCCCCc
Confidence            22110000    001112355566544        444555566688999999873211     1122223333445678


Q ss_pred             EEEEcCCCCEEEE-ecCCCeEEEEECCC--cee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEE
Q 020454          167 FSKVDISEKFSLF-GGKGVEVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVR  240 (326)
Q Consensus       167 ~~~~~~~~~~l~s-g~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~  240 (326)
                      .++|+|+++++++ ...++.|.+|++..  ++.  +.........   ......+..++|+|  ++++| ++...++.|.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~sp--dG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD---YTAHNGAAAIRLSH--DGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT---CCSCCEEEEEEECT--TSCEEEEEEETTTEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC---CCCCCcceeEEECC--CCCEEEEEeCCCCEEE
Confidence            8999999986555 56788999999874  432  2222222211   11124578899998  56666 5666789999


Q ss_pred             EEeCCCCC--CceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEEE--ECCCCeEE
Q 020454          241 LYDTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASV--DIRTGKLL  293 (326)
Q Consensus       241 iwd~~~~~--~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iw--d~~~~~~~  293 (326)
                      +||+....  ..+..+..+...+..++|+|+|++|++++. ++.|.+|  |..++++.
T Consensus       266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            99987321  234445555567889999999999887765 4899999  55667654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=2.6e-17  Score=147.73  Aligned_cols=251  Identities=12%  Similarity=0.035  Sum_probs=163.0

Q ss_pred             eeeeeecC-cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec---CCcEEEEeccc--ccee
Q 020454           15 LRALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN--GDLR   88 (326)
Q Consensus        15 ~~l~~~~~-~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i~i~~~~~--~~~~   88 (326)
                      -+|+.++. +|.++||++.++     +.. +.... ....+....|.  ++ ++++++..   +...++|.+..  ....
T Consensus        34 ~~la~~s~~~g~~~lw~~~~g-----~~~-~lt~~-~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~  103 (582)
T 3o4h_A           34 DKLLVVGFSEGSVNAYLYDGG-----ETV-KLNRE-PINSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEE  103 (582)
T ss_dssp             TEEEEEEEETTEEEEEEEETT-----EEE-ECCSS-CCSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCC
T ss_pred             CeEEEEEccCCceeEEEEcCC-----CcE-eeecc-cccccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcc
Confidence            35665555 999999999765     222 22211 11233344443  33 56776665   45567765543  2111


Q ss_pred             eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      ..+..       .  .......+.+.       .+..+++...++.+.+|+++...        ..++...  ..  .++
T Consensus       104 ~~l~~-------~--~~~~~~~~s~d-------g~~~~~~s~~~~~~~l~d~~~g~--------~~~l~~~--~~--~~~  155 (582)
T 3o4h_A          104 QRLEA-------V--KPMRILSGVDT-------GEAVVFTGATEDRVALYALDGGG--------LRELARL--PG--FGF  155 (582)
T ss_dssp             EECTT-------S--CSBEEEEEEEC-------SSCEEEEEECSSCEEEEEEETTE--------EEEEEEE--SS--CEE
T ss_pred             ccccC-------C--CCceeeeeCCC-------CCeEEEEecCCCCceEEEccCCc--------EEEeecC--CC--ceE
Confidence            22221       1  11222333221       22345555556666799876432        2222221  11  788


Q ss_pred             EEcCCCCEEEEecCC----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--eEEEE
Q 020454          169 KVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLY  242 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--~v~iw  242 (326)
                      +|+|+|++|++++.+    ..|++||+.+++.. .+..+         ...+..++|+|  +|+.|+++..++  .|++|
T Consensus       156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~---------~~~~~~~~~Sp--DG~~l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG---------EGSFSSASISP--GMKVTAGLETAREARLVTV  223 (582)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS---------SCEEEEEEECT--TSCEEEEEECSSCEEEEEE
T ss_pred             EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC---------CCccccceECC--CCCEEEEccCCCeeEEEEE
Confidence            999999999988777    78999999887654 33332         24578999998  677899888888  99999


Q ss_pred             eCCCCCCceeEEeecCCceEEEE--------ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVA--------EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~--------~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                      |+.++ +.. .+..+...+..++        |+|||..+++++.+|.+++|++  ++.+.   .+ .+.|.+++|+ +++
T Consensus       224 d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~-~~~v~~~~~s-dg~  294 (582)
T 3o4h_A          224 DPRDG-SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP-QGNHGRVVLW-RGK  294 (582)
T ss_dssp             CTTTC-CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC-SSEEEEEEEE-TTE
T ss_pred             cCCCC-cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC-CCceEEEEec-CCE
Confidence            99876 434 5556666666667        9999988889999999999999  76654   33 5689999999 999


Q ss_pred             EEEEeccCcc
Q 020454          315 IIASCGFLEA  324 (326)
Q Consensus       315 ~l~s~s~D~~  324 (326)
                      ++++++.|..
T Consensus       295 ~l~~~s~~~~  304 (582)
T 3o4h_A          295 LVTSHTSLST  304 (582)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEcCCCC
Confidence            9999887754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1.1e-16  Score=133.94  Aligned_cols=250  Identities=9%  Similarity=0.056  Sum_probs=160.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      ..++++..++.|++||..++     ++...+..+.. ...  .+.+  +++++++ +++..++.|.+||+.+++.+..+.
T Consensus        12 ~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~--~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B           12 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGPG--TAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSSC--EEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCCeEEEEECCCC-----cEEEEEecCCCCCCc--eeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            56788889999999999876     44444433220 111  2333  3445544 455678999999998888766655


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC------------CcEEEEEccccccccccccceEEEEEcc
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK------------GKASMRSIEVTKVSAESSCSTVKSWNVC  160 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~------------g~v~i~~~~~~~~~~~~~~~~~~~~~~~  160 (326)
                      ....+  ......+.++.+.+        ++..++++..+            +.|.+||+.....     ...+..+.. 
T Consensus        83 ~~~~~--~~~~~~~~~~~~sp--------dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~-  146 (349)
T 1jmx_B           83 LSSVP--GEVGRSMYSFAISP--------DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----AKPVRTFPM-  146 (349)
T ss_dssp             SCCST--TEEEECSSCEEECT--------TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----BCCSEEEEC-
T ss_pred             ccccc--ccccccccceEECC--------CCCEEEEEcccccccccccccCCCeEEEEECCCccc-----cceeeeccC-
Confidence            31000  00012245566544        55677777755            8999999875321     112333332 


Q ss_pred             CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC--------c---C------------------
Q 020454          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG--------I---F------------------  211 (326)
Q Consensus       161 ~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------~---~------------------  211 (326)
                       ...+.+++++|+++ +++++.  .|.+||+.+++.+..+.........        +   .                  
T Consensus       147 -~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          147 -PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             -CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             -CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence             34688899999999 555544  3999999988776655432100000        0   0                  


Q ss_pred             ------------------------------CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce
Q 020454          212 ------------------------------TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (326)
Q Consensus       212 ------------------------------~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i  261 (326)
                                                    ....+.+++|+|. ++++++++  ++.|.+||+.++ +.+..+... ..+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~-~~~  297 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGV--LNRLAKYDLKQR-KLIKAANLD-HTY  297 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS-CTTEEEEE--ESEEEEEETTTT-EEEEEEECS-SCC
T ss_pred             cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCC-CCCEEEEE--cCeEEEEECccC-eEEEEEcCC-CCc
Confidence                                          0012334555552 45577777  889999999976 445555543 457


Q ss_pred             EEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       262 ~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      ..++|+|++++|++++.++.|++||+++++.+..++.
T Consensus       298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            7899999999999989999999999999999888764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=2.2e-18  Score=158.54  Aligned_cols=232  Identities=8%  Similarity=-0.053  Sum_probs=153.8

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC--------
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--------  132 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~--------  132 (326)
                      ++++++++++ +.||+|++||+.+++....+....     .....+..+.+.+        ++..|++++.+        
T Consensus        24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~-----~~~~~v~~~~~Sp--------Dg~~l~~~~~~~~~~~~~~   89 (723)
T 1xfd_A           24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKK-----IESLRAIRYEISP--------DREYALFSYNVEPIYQHSY   89 (723)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTT-----TTTTTCSEEEECT--------TSSEEEEEESCCCCSSSCC
T ss_pred             EcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccc-----ccccccceEEECC--------CCCEEEEEecCccceeecc
Confidence            4455556665 789999999999888755544210     0011366677655        56678888764        


Q ss_pred             -CcEEEEEccccccccccccceEEEEEc--cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          133 -GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       133 -g~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                       +.+.+|++.....         +....  .+...+..++|+|+|+.||.++. +.|++||+.+++.......+......
T Consensus        90 ~~~i~~~d~~~~~~---------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~  159 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP---------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY  159 (723)
T ss_dssp             CSEEEEEESSSCCC---------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred             eeeEEEEECCCCce---------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence             6778998765331         11111  11223778999999999998876 79999999987765544332211100


Q ss_pred             cCCC---------CceeeeEEeecCCCcEEEEEeCCC----------------------------------eEEEEeCCC
Q 020454          210 IFTP---------TWFTSAAFLSIDDHRKFVAGTNDH----------------------------------QVRLYDTSA  246 (326)
Q Consensus       210 ~~~~---------~~v~~~~~~p~~~~~~l~~~~~dg----------------------------------~v~iwd~~~  246 (326)
                      ...+         ..+.+++|+|  +++.|++++.++                                  .|++||+.+
T Consensus       160 ~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~  237 (723)
T 1xfd_A          160 NGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG  237 (723)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred             CcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence            0001         1236899998  677888877543                                  899999987


Q ss_pred             CCCceeEEeec------CCceEEEEecCCCCeEEEEcC----CCcEEEEECCCCeEEEEEcceecceEE----EEEECCC
Q 020454          247 QRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIR----SIARHPT  312 (326)
Q Consensus       247 ~~~~~~~~~~~------~~~i~~v~~s~~~~~l~~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~v~----~l~~~p~  312 (326)
                      + +....+..+      ...+..++|+|||++|++...    +..|++||+.+++....+..++.+.+.    .++|+|+
T Consensus       238 ~-~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          238 P-THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             S-CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             C-ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence            6 333445433      567899999999998876543    357999999999877666543244443    8899999


Q ss_pred             CCEEEEe
Q 020454          313 LPIIASC  319 (326)
Q Consensus       313 ~~~l~s~  319 (326)
                      ++.|+..
T Consensus       317 g~~l~~~  323 (723)
T 1xfd_A          317 GRKFFFI  323 (723)
T ss_dssp             SCSEEEE
T ss_pred             CCeEEEE
Confidence            9977754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=6.5e-16  Score=130.50  Aligned_cols=273  Identities=14%  Similarity=0.040  Sum_probs=164.0

Q ss_pred             eeeeeecCc--ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc-ccceeeee
Q 020454           15 LRALTFDSL--GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~--G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~-~~~~~~~~   91 (326)
                      .++++|+..  +.|.+|++... .+..+........ .......+.+  ++++++|++++.+ .|.+|++. ++++....
T Consensus         3 ~~~~vg~~~~~~~i~~~~~d~~-~g~l~~~~~~~~~-~~~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            3 HHLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIP-QDEPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECC-TTCCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEccCCCcEEEEEEECC-CCCEEEeeEEccC-CCCCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEee
Confidence            456677654  56888887543 3333222221101 1111222333  4556678888887 99999997 67654332


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCce--EEEEe-------------cCCcEEEEEccccccccccccceEEE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT--LLTCT-------------TKGKASMRSIEVTKVSAESSCSTVKS  156 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~--l~~~~-------------~~g~v~i~~~~~~~~~~~~~~~~~~~  156 (326)
                      ..       ...+.+.++.+.+        ++..  ++++.             .+|.+.+|+++....    ....+..
T Consensus        78 ~~-------~~~g~~~~~~~sp--------dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~~  138 (365)
T 1jof_A           78 SH-------PIGGHPRANDADT--------NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQN  138 (365)
T ss_dssp             EE-------ECCSSGGGGCTTS--------CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEEE
T ss_pred             Ee-------ecCCCCccEEECC--------CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEee
Confidence            21       0012233455433        3443  33442             688999999864221    1112333


Q ss_pred             EEccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECC-Cceeee--eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEE
Q 020454          157 WNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (326)
Q Consensus       157 ~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~  232 (326)
                      +.......+..++|+|++++|+++. .++.|.+||+. +++...  ......       +...+..++|+|  +++++++
T Consensus       139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------~g~~p~~~~~sp--dg~~l~v  209 (365)
T 1jof_A          139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAMHP--TGNYLYA  209 (365)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEECT--TSSEEEE
T ss_pred             EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------CCCCCCEeEECC--CCCEEEE
Confidence            3323456799999999999887765 36799999998 665422  221100       113477899998  5667776


Q ss_pred             Ee-CCCeEEEEeCC--CCCCce---eEEee-------cCC------ceEEEE-ecCCCCeEEEEcCCC------cEEEEE
Q 020454          233 GT-NDHQVRLYDTS--AQRRPV---MSFDF-------RET------PIKAVA-EEPDSFNIYIGNGSG------DLASVD  286 (326)
Q Consensus       233 ~~-~dg~v~iwd~~--~~~~~~---~~~~~-------~~~------~i~~v~-~s~~~~~l~~g~~dg------~v~iwd  286 (326)
                      ++ .++.|.+|++.  ++ +..   ..+..       +..      .+..++ |+|||++|++++.+.      .|.+|+
T Consensus       210 ~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~  288 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             EETTTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred             EECCCCeEEEEEEeCCCC-cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence            65 47899999865  33 221   12221       111      478999 999999998766432      899999


Q ss_pred             CC-CCeEEE---EEcceecceEEEEEECC---CCCEEEEeccC
Q 020454          287 IR-TGKLLG---CFIGKCSGSIRSIARHP---TLPIIASCGFL  322 (326)
Q Consensus       287 ~~-~~~~~~---~~~~~~~~~v~~l~~~p---~~~~l~s~s~D  322 (326)
                      +. ++++..   ....+ ...+..++|+|   ++++|++++.|
T Consensus       289 ~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          289 LRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             ECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcC
Confidence            96 666543   23333 44677899999   89999998865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=1.6e-17  Score=149.16  Aligned_cols=224  Identities=12%  Similarity=-0.025  Sum_probs=152.8

Q ss_pred             EEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-
Q 020454           54 VLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-  131 (326)
Q Consensus        54 ~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-  131 (326)
                      +..+.+.  .++++|+.++. ||+++||++..++.. .+..       .+...+....+.+        + ..++++.. 
T Consensus        24 ~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~-------~~~~~~~~~~~sp--------d-~~l~~~~~~   84 (582)
T 3o4h_A           24 KYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETV-KLNR-------EPINSVLDPHYGV--------G-RVILVRDVS   84 (582)
T ss_dssp             EEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEE-ECCS-------SCCSEECEECTTC--------S-EEEEEEECS
T ss_pred             hheeecC--CCCCeEEEEEccCCceeEEEEcCCCcE-eeec-------ccccccccccCCC--------C-eEEEEeccC
Confidence            3344443  34557888877 999999998665543 3221       2224566666543        3 44555543 


Q ss_pred             --CCcEEEEEccc--cccccccccceEEEEEccCCCceEEEEEcCCCC--EEEEecCCCeEEEEECCCceeeeeecCCCC
Q 020454          132 --KGKASMRSIEV--TKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (326)
Q Consensus       132 --~g~v~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  205 (326)
                        +....+|.++.  ..        ...  .+.........+++|+++  +++++..+ .+.+||+.+++........  
T Consensus        85 ~g~~~~~l~~~~~~~~g--------~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~--  151 (582)
T 3o4h_A           85 KGAEQHALFKVNTSRPG--------EEQ--RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLP--  151 (582)
T ss_dssp             TTSCCEEEEEEETTSTT--------CCE--ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES--
T ss_pred             CCCcceEEEEEeccCCC--------ccc--cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC--
Confidence              45567776654  22        111  122233444567777764  45555444 5559999888764443221  


Q ss_pred             CCCCcCCCCceeeeEEeecCCCcEEEEEeCC----CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC-
Q 020454          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-  280 (326)
Q Consensus       206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg-  280 (326)
                              .  .+++|+|  +|++|++++.+    +.|++||+.++ + ...+..+...+..++|+|||++|+++..++ 
T Consensus       152 --------~--~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          152 --------G--FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             --------S--CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             --------C--ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence                    1  4778998  67789988776    78999999876 3 456777888899999999999999888888 


Q ss_pred             -cEEEEECCCCeEEEEEcceecceEEEEE--------ECCCCCEEEEeccCccC
Q 020454          281 -DLASVDIRTGKLLGCFIGKCSGSIRSIA--------RHPTLPIIASCGFLEAA  325 (326)
Q Consensus       281 -~v~iwd~~~~~~~~~~~~~~~~~v~~l~--------~~p~~~~l~s~s~D~~~  325 (326)
                       .|++||+.+++.. .+.+| ...+..++        |+|++.++++++.|+.+
T Consensus       218 ~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          218 ARLVTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             EEEEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             eEEEEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence             8999999998887 66766 77777777        99999999999988754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.77  E-value=2.7e-16  Score=130.91  Aligned_cols=233  Identities=13%  Similarity=0.066  Sum_probs=153.2

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCC---CceEEEEEeeeCCCCCeEEEEe------------cCCcEEEE
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVAR------------KNGLTDIL   80 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~------------~dg~i~i~   80 (326)
                      -++++..++.|.+||+.++     +....+.....   ......+.  .++++++|+++.            .++.|.+|
T Consensus        48 l~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~  120 (337)
T 1pby_B           48 AYATVNKSESLVKIDLVTG-----ETLGRIDLSTPEERVKSLFGAA--LSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             EEEEETTTTEEEEEETTTC-----CEEEEEECCBTTEEEECTTCEE--ECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCC-----CeEeeEEcCCcccccccccceE--ECCCCCEEEEEecccccccccccccCceEEEE
Confidence            3566777899999999876     33333322110   00111222  345566788876            57999999


Q ss_pred             eccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc
Q 020454           81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~  160 (326)
                      |+.+++.+..+..         ...+.++.+.+        ++..++++  ++.+.+|++....        .+..+...
T Consensus       121 d~~~~~~~~~~~~---------~~~~~~~~~s~--------dg~~l~~~--~~~i~~~d~~~~~--------~~~~~~~~  173 (337)
T 1pby_B          121 DAETLSRRKAFEA---------PRQITMLAWAR--------DGSKLYGL--GRDLHVMDPEAGT--------LVEDKPIQ  173 (337)
T ss_dssp             ETTTTEEEEEEEC---------CSSCCCEEECT--------TSSCEEEE--SSSEEEEETTTTE--------EEEEECST
T ss_pred             ECCCCcEEEEEeC---------CCCcceeEECC--------CCCEEEEe--CCeEEEEECCCCc--------Eeeeeecc
Confidence            9988877665542         12345566543        45566666  7899999976533        23333322


Q ss_pred             C-CCceEEEEEcCCCCEEEEecCC-C-----------------------eEEEEECCCceeeeeecCCCCCCCCcCCCCc
Q 020454          161 A-SGTIAFSKVDISEKFSLFGGKG-V-----------------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (326)
Q Consensus       161 ~-~~~v~~~~~~~~~~~l~sg~~d-~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  215 (326)
                      . ..   .+.++|+++.++..+.+ +                       .|.+||+.+++.. ......       ....
T Consensus       174 ~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-------~~~~  242 (337)
T 1pby_B          174 SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI-------MDVF  242 (337)
T ss_dssp             TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE-------CSSC
T ss_pred             ccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC-------CCCc
Confidence            2 12   22678888766544432 2                       4689999887764 221110       1134


Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~  295 (326)
                      +.+++|+|  ++++++++  ++.|++||+.+. +.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++.+..
T Consensus       243 ~~~~~~s~--dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          243 YFSTAVNP--AKTRAFGA--YNVLESFDLEKN-ASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             EEEEEECT--TSSEEEEE--ESEEEEEETTTT-EEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             eeeEEECC--CCCEEEEe--CCeEEEEECCCC-cCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence            67889998  56677777  799999999876 445555544 5678899999999999999999999999999999988


Q ss_pred             Ecce
Q 020454          296 FIGK  299 (326)
Q Consensus       296 ~~~~  299 (326)
                      ++.+
T Consensus       317 ~~~~  320 (337)
T 1pby_B          317 VDLP  320 (337)
T ss_dssp             EECG
T ss_pred             EEcC
Confidence            8754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.71  E-value=3.1e-15  Score=142.89  Aligned_cols=214  Identities=14%  Similarity=0.112  Sum_probs=153.8

Q ss_pred             CeEEEEecCCcEEEEeccc-cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           66 PLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      .+++++..||.++||.+.. +.....+..        + ..+....+.+        ++..++.+ .++.|++|++....
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~--------~-~~~~~~~~Sp--------DG~~la~~-~~~~i~~~d~~~~~  276 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDGKDLRKHTS--------F-TDYYPRHLNT--------DGRRILFS-KGGSIYIFNPDTEK  276 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCSCEECCC--------C-CSSCEEEEEE--------SSSCEEEE-ETTEEEEECTTTCC
T ss_pred             EEEEEEeccCceEEEEEeCCCCcceEecC--------C-CCcceeeEcC--------CCCEEEEE-eCCEEEEecCCceE
Confidence            4677788889999998753 322233221        1 1233344333        44556555 68999999873211


Q ss_pred             cccccccceEEEEEc----------cCCCceEEEEEc-CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454          145 VSAESSCSTVKSWNV----------CASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~----------~~~~~v~~~~~~-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  213 (326)
                               +..+..          .+...+..++|+ |++++|++++ ++.|.+|++..++... +..+         .
T Consensus       277 ---------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~---------~  336 (1045)
T 1k32_A          277 ---------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEP---------L  336 (1045)
T ss_dssp             ---------EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCC---------S
T ss_pred             ---------eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCC---------C
Confidence                     111110          112368899999 9999888877 7899999998766433 2222         1


Q ss_pred             C-ceeeeEEeecCCCcEEEEEeCCCeEE-EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          214 T-WFTSAAFLSIDDHRKFVAGTNDHQVR-LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       214 ~-~v~~~~~~p~~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                      . .+..++|+   +++.|+.++.++.+. +||+... . ...+..+...+..++|+|+|++|++++.++.|++||+.+++
T Consensus       337 ~~~~~~~~~s---dg~~l~~~s~~~~l~~~~d~~~~-~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          337 RIRYVRRGGD---TKVAFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             CEEEEEECSS---SEEEEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cceEEeeeEc---CCCeEEEEECCCceEEEEECCCC-C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence            3 57788887   456888888888888 9998865 3 34455677889999999999999999999999999999999


Q ss_pred             EEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          292 LLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ....+.+| .+.+.+++|+|++++|++++.++
T Consensus       412 ~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~  442 (1045)
T 1k32_A          412 PTVIERSR-EAMITDFTISDNSRFIAYGFPLK  442 (1045)
T ss_dssp             EEEEEECS-SSCCCCEEECTTSCEEEEEEEEC
T ss_pred             eEEeccCC-CCCccceEECCCCCeEEEEecCc
Confidence            88877777 88999999999999999887754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.71  E-value=4.3e-16  Score=143.30  Aligned_cols=273  Identities=10%  Similarity=-0.051  Sum_probs=160.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeEEEEec---------CCcEEEEeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARK---------NGLTDILNPLN   84 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~---------dg~i~i~~~~~   84 (326)
                      -+++..+.+|.|++|++.++     +.......+.. ...+..+  .+++++++|++++.         ++.|++||+.+
T Consensus        27 g~~~~~~~d~~i~~~~~~~g-----~~~~~~~~~~~~~~~~~~~--~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           27 QEYLHQSADNNIVLYNIETG-----QSYTILSNRTMKSVNASNY--GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             SEEEEECTTSCEEEEESSSC-----CEEEEECHHHHHTTTCSEE--EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             CeEEEEcCCCCEEEEEcCCC-----cEEEEEccccccccceeeE--EECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            46777778999999999877     22222221111 0012223  34567778888876         79999999988


Q ss_pred             cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce-EEEEEccCC-
Q 020454           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCAS-  162 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~-~~~~~~~~~-  162 (326)
                      ++.+.....         ...+..+.+.+        ++..|+.+ .++.|++|++..........++. ..+++- .. 
T Consensus       100 g~~~~~~~l---------~~~~~~~~~SP--------DG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g-~~~  160 (719)
T 1z68_A          100 GEFVRGNEL---------PRPIQYLCWSP--------VGSKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNG-IPD  160 (719)
T ss_dssp             TEECCSSCC---------CSSBCCEEECS--------STTCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEES-SCC
T ss_pred             Cccccceec---------CcccccceECC--------CCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcc-ccc
Confidence            876321111         03455566544        45566665 58899999976543211000110 001110 00 


Q ss_pred             --------CceEEEEEcCCCCEEEEecCCC----------------------------------eEEEEECCCceee--e
Q 020454          163 --------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDKCEKI--W  198 (326)
Q Consensus       163 --------~~v~~~~~~~~~~~l~sg~~d~----------------------------------~i~iwd~~~~~~~--~  198 (326)
                              .....++|+|+|++|++++.|.                                  .|++||+.+++..  .
T Consensus       161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~  240 (719)
T 1z68_A          161 WVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ  240 (719)
T ss_dssp             HHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred             ceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence                    1124899999999999887652                                  7889999887643  1


Q ss_pred             eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC----CeEEEEe----CCCCCCceeEE----eecCCceE----
Q 020454          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYD----TSAQRRPVMSF----DFRETPIK----  262 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----g~v~iwd----~~~~~~~~~~~----~~~~~~i~----  262 (326)
                      .+....  . ...+...+..++|+|+  ++++++....    ..|.+||    +.++ +....+    ..+...+.    
T Consensus       241 ~~~~~~--~-~~~~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  314 (719)
T 1z68_A          241 EVPVPA--M-IASSDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFV  314 (719)
T ss_dssp             ECCCCH--H-HHTSCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSC
T ss_pred             EccCCc--c-CCCCcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccC
Confidence            111000  0 0013356889999994  5566664322    3588899    7655 222222    34555665    


Q ss_pred             -EEEecCCCCeEEE--EcCCC--cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          263 -AVAEEPDSFNIYI--GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       263 -~v~~s~~~~~l~~--g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                       .++|+|||+.|+.  +..+|  .|.+||+.+++ ...+..+ ...+..+.+. +++.|+..+.+
T Consensus       315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG-KWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS-SSCEEEEEEE-CSSEEEEEESC
T ss_pred             CccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC-ceEEEEEEEE-eCCEEEEEEec
Confidence             7899999996653  54555  47777877766 3445554 5567777777 77666655544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=6.9e-15  Score=123.86  Aligned_cols=265  Identities=10%  Similarity=0.062  Sum_probs=157.0

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEEEeccccceeeee
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~~   91 (326)
                      .++.|.+||..++     ++.........     . ....++++++++++.          .++.|.+||..+.+.+..+
T Consensus        29 ~d~~v~v~D~~t~-----~~~~~i~~g~~-----p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i   97 (361)
T 2oiz_A           29 TESRVHVYDYTNG-----KFLGMVPTAFN-----G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI   97 (361)
T ss_dssp             GGCEEEEEETTTC-----CEEEEEECCEE-----E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred             ccCeEEEEECCCC-----eEEEEecCCCC-----C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence            3679999998776     44444432211     1 334456677888886          3678999999888877776


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccc---------------------
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAE---------------------  148 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~---------------------  148 (326)
                      ......  ..+.....++.+.+        ++.+++++..  ++.|.+||+........                     
T Consensus        98 ~~~~~~--~~~g~~p~~i~~sp--------dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           98 SLPPKR--VQGLNYDGLFRQTT--------DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFM  167 (361)
T ss_dssp             EECTTB--CCBCCCGGGEEECT--------TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEE
T ss_pred             EcCccc--cccCCCcceEEECC--------CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEE
Confidence            542100  00112344566544        5567777764  58899999875432111                     


Q ss_pred             --cccceEEEEEccCCCceEEE----------------EEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCC
Q 020454          149 --SSCSTVKSWNVCASGTIAFS----------------KVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSL  208 (326)
Q Consensus       149 --~~~~~~~~~~~~~~~~v~~~----------------~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~  208 (326)
                        ..++.+..+.....+.+...                .+.+++..++..+.++.+.++|+......  ...........
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence              11222333333221222100                11123334444556677777777543211  11100000000


Q ss_pred             Cc-CCCCceeeeEEeecCCCcEEEEEeC-----------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE
Q 020454          209 GI-FTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       209 ~~-~~~~~v~~~~~~p~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g  276 (326)
                      .. ..+.....++|+|  +++.+++...           .+.|.+||+.+. +.+.++..+.  ...++|+|+|++|+++
T Consensus       248 ~~~~~p~g~~~~a~~~--dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~~l~v~  322 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHR--ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRNLMLTL  322 (361)
T ss_dssp             HTTCEECCSSCEEEET--TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred             ccccccCCeeEEEEec--CCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCCEEEEe
Confidence            00 0011112367887  3345555432           358999999987 6678887776  8999999999999988


Q ss_pred             cCCCcEEEEECCCC--eEEEEEcceecceEEEEEECCCCC
Q 020454          277 NGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       277 ~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                      +. +.|.+||..++  +.+.++... ....+.++++|+|.
T Consensus       323 n~-~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          323 DG-GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFHPVGG  360 (361)
T ss_dssp             CS-SCEEEEECSSSSCEEEEEETTS-CSSEEEEEECCCSC
T ss_pred             CC-CeEEEEECCCCcceeeEEeccC-CCCcEEEEecCCCC
Confidence            87 99999999999  999988654 66778899999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=1.2e-13  Score=112.39  Aligned_cols=229  Identities=9%  Similarity=0.088  Sum_probs=152.0

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSI  140 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~  140 (326)
                      +++.++++...++.|.+||.. ++.+..+......  ..+...+.++++..        .++.++++..  ++.|.+|+.
T Consensus        39 ~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~--~~~~~~p~~i~~~~--------~~g~l~v~~~~~~~~i~~~d~  107 (286)
T 1q7f_A           39 AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR--DSQLLYPNRVAVVR--------NSGDIIVTERSPTHQIQIYNQ  107 (286)
T ss_dssp             TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS--TTCBSSEEEEEEET--------TTTEEEEEECGGGCEEEEECT
T ss_pred             CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC--cccccCceEEEEEc--------CCCeEEEEcCCCCCEEEEECC
Confidence            445577777889999999985 5555544321100  11223456666522        2345555543  788998883


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      +.         ..+..+.......+..++++++++++++...++.|.+||.. ++.+..+....       ....+.+++
T Consensus       108 ~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------~~~~p~~i~  170 (286)
T 1q7f_A          108 YG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------HLEFPNGVV  170 (286)
T ss_dssp             TS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------TCSSEEEEE
T ss_pred             CC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC-------ccCCcEEEE
Confidence            21         12333433334568999999999988888888999999965 44443332110       113477899


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec--CCceEEEEecCCCCeEEEEcCCC-cEEEEECCCCeEEEEEc
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSG-DLASVDIRTGKLLGCFI  297 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~i~~v~~s~~~~~l~~g~~dg-~v~iwd~~~~~~~~~~~  297 (326)
                      +.|  +++++++...++.|++||...  ..+..+...  ...+..++++++|+++++...++ .|.+||. +++.+..+.
T Consensus       171 ~~~--~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~  245 (286)
T 1q7f_A          171 VND--KQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  245 (286)
T ss_dssp             ECS--SSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             ECC--CCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc
Confidence            987  566777778899999999853  345555433  25688999999998888887776 9999995 566777666


Q ss_pred             cee-cceEEEEEECCCCCEEEEeccCccC
Q 020454          298 GKC-SGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       298 ~~~-~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+. ...+.+++++|+++++++ +.|+.+
T Consensus       246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v  273 (286)
T 1q7f_A          246 SKVKHAQCFDVALMDDGSVVLA-SKDYRL  273 (286)
T ss_dssp             ESSCCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred             ccCCCCcceeEEECCCCcEEEE-CCCCeE
Confidence            431 224779999999987777 457654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=3.1e-14  Score=118.39  Aligned_cols=225  Identities=8%  Similarity=-0.030  Sum_probs=151.1

Q ss_pred             CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceE
Q 020454           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (326)
Q Consensus        75 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~  154 (326)
                      ++|.+||..+++++..+..       ..-..+.++++.+        ++..+++...++.|++|+.+....       .+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~-------~~~~~p~gia~d~--------~g~l~v~d~~~~~v~~~~~~g~~~-------~~  126 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGK-------NLFYLPHGLSIDT--------DGNYWVTDVALHQVFKLDPHSKEG-------PL  126 (329)
T ss_dssp             CCEEEECTTTCCEEEEECT-------TTCSSEEEEEECT--------TSCEEEEETTTTEEEEECTTCSSC-------CS
T ss_pred             CcEEEEECCCCeEEeccCC-------CccCCceEEEECC--------CCCEEEEECCCCEEEEEeCCCCeE-------EE
Confidence            4799999988887655432       2224566777644        455677777789999998653310       11


Q ss_pred             EEEE--------ccCCCceEEEEEcC-CCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCC-CCcCCCCceeeeEEee
Q 020454          155 KSWN--------VCASGTIAFSKVDI-SEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLS  223 (326)
Q Consensus       155 ~~~~--------~~~~~~v~~~~~~~-~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p  223 (326)
                      ..+.        .........++++| +++++++.+ .++.|++|| .+++.+..+....... ..........++++.|
T Consensus       127 ~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~  205 (329)
T 3fvz_A          127 LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP  205 (329)
T ss_dssp             EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred             EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence            1111        11223588999999 788888876 689999999 4555555443211110 0000113477899987


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe--ecCCceEEEEecC------CCCeEEEEcCCCcEEEEECCCCeEEEE
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEP------DSFNIYIGNGSGDLASVDIRTGKLLGC  295 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~i~~v~~s~------~~~~l~~g~~dg~v~iwd~~~~~~~~~  295 (326)
                      . .++++++...++.|++||..++ +.+..+.  .+...+..++|+|      +|+..++...+..|++||+.+++.+..
T Consensus       206 ~-~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          206 H-LDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             T-TTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             C-CCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            4 3668888888999999999866 5566653  2445788899999      344333344556899999999999988


Q ss_pred             Ec---ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          296 FI---GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       296 ~~---~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.   ++ ......|+++|++.++++...++.+
T Consensus       284 ~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I  315 (329)
T 3fvz_A          284 FKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTV  315 (329)
T ss_dssp             ECCSSSC-CSSEEEEEECTTSEEEEEESSSCCE
T ss_pred             EcCCCCc-cCCeeEEEECCCCCEEEEECCCCEE
Confidence            84   55 6678999999999888887777654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=147.20  Aligned_cols=233  Identities=7%  Similarity=-0.088  Sum_probs=148.2

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---------C
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------K  132 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---------~  132 (326)
                      .+.+. ++..+.||+|++||+.+++....+....     .....+..+.+.+        ++..|+.++.         +
T Consensus        24 s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~Sp--------Dg~~la~~~~~~~~~~~s~~   89 (719)
T 1z68_A           24 ISGQE-YLHQSADNNIVLYNIETGQSYTILSNRT-----MKSVNASNYGLSP--------DRQFVYLESDYSKLWRYSYT   89 (719)
T ss_dssp             SSSSE-EEEECTTSCEEEEESSSCCEEEEECHHH-----HHTTTCSEEEECT--------TSSEEEEEEEEEECSSSCEE
T ss_pred             CCCCe-EEEEcCCCCEEEEEcCCCcEEEEEcccc-----ccccceeeEEECC--------CCCeEEEEecCceeEEeecc
Confidence            34444 4445579999999998888655443210     0001255666644        5667777766         6


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      +.+++|++.......   ...+       ...+..++|+|+|+.|+.+. ++.|++||+.+++..............-.+
T Consensus        90 ~~i~~~d~~~g~~~~---~~~l-------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~  158 (719)
T 1z68_A           90 ATYYIYDLSNGEFVR---GNEL-------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI  158 (719)
T ss_dssp             EEEEEEETTTTEECC---SSCC-------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred             eEEEEEECCCCcccc---ceec-------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence            899999976543200   0011       24578899999999999875 789999999887664332221111000011


Q ss_pred             CCce---------eeeEEeecCCCcEEEEEeCCC----------------------------------eEEEEeCCCCCC
Q 020454          213 PTWF---------TSAAFLSIDDHRKFVAGTNDH----------------------------------QVRLYDTSAQRR  249 (326)
Q Consensus       213 ~~~v---------~~~~~~p~~~~~~l~~~~~dg----------------------------------~v~iwd~~~~~~  249 (326)
                      +.||         .+++|+|  +|+.|+.++.|.                                  .|++||+.++ +
T Consensus       159 ~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~  235 (719)
T 1z68_A          159 PDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-A  235 (719)
T ss_dssp             CCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-H
T ss_pred             ccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-C
Confidence            2222         5889998  677898887552                                  7889999865 2


Q ss_pred             ce--------eEEeecCCceEEEEecCCCCeEEEEcCC----CcEEEEE----CCCCeEEEEE----cceecceEE----
Q 020454          250 PV--------MSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVD----IRTGKLLGCF----IGKCSGSIR----  305 (326)
Q Consensus       250 ~~--------~~~~~~~~~i~~v~~s~~~~~l~~g~~d----g~v~iwd----~~~~~~~~~~----~~~~~~~v~----  305 (326)
                      ..        ..+..+...+..++|+||++++++....    ..|.+||    +.+++....+    .+| .+.+.    
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~  314 (719)
T 1z68_A          236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFV  314 (719)
T ss_dssp             HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSC
T ss_pred             ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccC
Confidence            21        1122466788999999998777764432    2488899    8777665444    345 66676    


Q ss_pred             -EEEECCCCCEEEE--eccCc
Q 020454          306 -SIARHPTLPIIAS--CGFLE  323 (326)
Q Consensus       306 -~l~~~p~~~~l~s--~s~D~  323 (326)
                       .+.|+|+++.|+.  ...||
T Consensus       315 ~~~~~spdg~~l~~~~~~~~g  335 (719)
T 1z68_A          315 STPVFSYDAISYYKIFSDKDG  335 (719)
T ss_dssp             CCCEECTTSSCEEEEEECTTS
T ss_pred             CccEECCCCCeEEEEEEccCC
Confidence             8899999986554  43444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1e-13  Score=112.03  Aligned_cols=221  Identities=8%  Similarity=-0.072  Sum_probs=154.0

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      .+++|++++.|+.|.+||.++++.+..+..       .....+.++...+        +++ +++ +.++.|..||. ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-------~~~~~~~~~~~~p--------dG~-ilv-s~~~~V~~~d~-~G   65 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-------EKGWECNSVAATK--------AGE-ILF-SYSKGAKMITR-DG   65 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-------CTTCCCCEEEECT--------TSC-EEE-ECBSEEEEECT-TS
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-------CccCCCcCeEECC--------CCC-EEE-eCCCCEEEECC-CC
Confidence            456899999999999999999999888774       1112344445433        334 444 45777888874 21


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                      +        .+..+.......+.++.+.++++++++.+. ++.|..+|. +++.++..........   ...+...+++.
T Consensus        66 ~--------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~---~~~~~~~v~~~  133 (276)
T 3no2_A           66 R--------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIER---PHAQFRQINKN  133 (276)
T ss_dssp             C--------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSS---GGGSCSCCEEC
T ss_pred             C--------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCc---ccccccCceEC
Confidence            1        333333322357889999999999988776 778888886 6776665432111000   01123344555


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee--
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--  300 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~--  300 (326)
                      +  +++++++...++.|..||.. + +.+.++... ....++...++|+.++++..++.|..+|..+|+.+.++..+.  
T Consensus       134 ~--~G~~lv~~~~~~~v~~~d~~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~  208 (276)
T 3no2_A          134 K--KGNYLVPLFATSEVREIAPN-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE  208 (276)
T ss_dssp             T--TSCEEEEETTTTEEEEECTT-S-CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB
T ss_pred             C--CCCEEEEecCCCEEEEECCC-C-CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC
Confidence            4  67799999999999999998 6 567777665 345667888999999998888899999999999998886430  


Q ss_pred             ---cceEEEEEECCCCCEEEEe
Q 020454          301 ---SGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       301 ---~~~v~~l~~~p~~~~l~s~  319 (326)
                         ...+..++..+++.++++.
T Consensus       209 ~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          209 GVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SCCCSEEEEEEECTTSCEEEEE
T ss_pred             CccccccccceEcCCCCEEEEe
Confidence               1237888999999888876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=6e-15  Score=135.99  Aligned_cols=233  Identities=6%  Similarity=-0.068  Sum_probs=142.4

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC--------
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--------  132 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~--------  132 (326)
                      +.+++.+++++  ||+|++||+.+++....+......   ..........+.+        ++..|+..+.+        
T Consensus        24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sp--------dg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---EFGHSINDYSISP--------DGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---TCCSCCCEEEECT--------TSSEEEEEEEEEECSSSCE
T ss_pred             ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---hhcccccceEECC--------CCCEEEEEECCeeeEEEcc
Confidence            44555677775  999999999988865444421100   0011111133333        55677777765        


Q ss_pred             -CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          133 -GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       133 -g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                       +.+.+||+......      .   . ..+...+...+|+|+|+.||.+ .++.|++||+.+++..............-.
T Consensus        91 ~~~~~~~d~~~~~~~------~---l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g  159 (740)
T 4a5s_A           91 TASYDIYDLNKRQLI------T---E-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG  159 (740)
T ss_dssp             EEEEEEEETTTTEEC------C---S-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred             ceEEEEEECCCCcEE------E---c-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecC
Confidence             56678887654311      0   0 1124578999999999999887 578999999988765432221111110001


Q ss_pred             CCCce---------eeeEEeecCCCcEEEEEeCCC------------------------------------eEEEEeCCC
Q 020454          212 TPTWF---------TSAAFLSIDDHRKFVAGTNDH------------------------------------QVRLYDTSA  246 (326)
Q Consensus       212 ~~~~v---------~~~~~~p~~~~~~l~~~~~dg------------------------------------~v~iwd~~~  246 (326)
                      ++.||         .++.|+|  ||+.|+..+.|.                                    +|++||+.+
T Consensus       160 ~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~  237 (740)
T 4a5s_A          160 ITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS  237 (740)
T ss_dssp             BCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred             cccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence            12222         3478998  677888764221                                    588899887


Q ss_pred             ---CCC-ceeEEee------cCCceEEEEecCCCCeEEEEcC----CCcEEEEECCCCe----EE--EEE--cceecceE
Q 020454          247 ---QRR-PVMSFDF------RETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGK----LL--GCF--IGKCSGSI  304 (326)
Q Consensus       247 ---~~~-~~~~~~~------~~~~i~~v~~s~~~~~l~~g~~----dg~v~iwd~~~~~----~~--~~~--~~~~~~~v  304 (326)
                         +.. ....+..      +...+..++|+|||+.++....    +..|++||+.+++    +.  ..+  .+| .+.|
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v  316 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWV  316 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCS
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceE
Confidence               521 2334432      6667999999999997664432    3369999999887    21  222  334 5555


Q ss_pred             E-----EEEECCCCCEEE-Eec
Q 020454          305 R-----SIARHPTLPIIA-SCG  320 (326)
Q Consensus       305 ~-----~l~~~p~~~~l~-s~s  320 (326)
                      .     ..+|+||++.|+ ..+
T Consensus       317 ~~~~~~~p~fspDG~~l~~~~s  338 (740)
T 4a5s_A          317 GRFRPSEPHFTLDGNSFYKIIS  338 (740)
T ss_dssp             SSSSCCCCEECTTSSEEEEEEE
T ss_pred             ccCcCCCceEcCCCCEEEEEEE
Confidence            4     789999999776 554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=1.1e-12  Score=106.78  Aligned_cols=230  Identities=8%  Similarity=0.051  Sum_probs=145.8

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCC----CCCceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeee
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDP----HSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~   91 (326)
                      +++...++.|++|+....      ....+...    ........+.+. ...+.++++... ++.|.+|+. +++.+..+
T Consensus        44 ~v~~~~~~~i~~~d~~g~------~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~  115 (286)
T 1q7f_A           44 IVADTNNHRIQIFDKEGR------FKFQFGECGKRDSQLLYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKF  115 (286)
T ss_dssp             EEEEGGGTEEEEECTTSC------EEEEECCBSSSTTCBSSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEE
T ss_pred             EEEECCCCEEEEECCCCc------EEEEecccCCCcccccCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEe
Confidence            444467788999997643      33334321    111233344442 233444554433 899999994 66665555


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKV  170 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  170 (326)
                      ..       .+...+.++.+.+        ++..+++...++.|.+|+.+..         .+..+.. .....+..+++
T Consensus       116 ~~-------~~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~~~~g~---------~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A          116 GA-------TILQHPRGVTVDN--------KGRIIVVECKVMRVIIFDQNGN---------VLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             CT-------TTCSCEEEEEECT--------TSCEEEEETTTTEEEEECTTSC---------EEEEEECTTTCSSEEEEEE
T ss_pred             cC-------ccCCCceEEEEeC--------CCCEEEEECCCCEEEEEcCCCC---------EEEEeCCCCccCCcEEEEE
Confidence            32       2224566677543        3445566667888999984321         2333332 22346889999


Q ss_pred             cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCC
Q 020454          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRR  249 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~  249 (326)
                      +++++++++...++.|++||.. ++.+..+....       ....+.++++.|  +++++++...++ .|.+||.. + +
T Consensus       172 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g-------~~~~p~~i~~d~--~G~l~v~~~~~~~~i~~~~~~-g-~  239 (286)
T 1q7f_A          172 NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG-------ITNYPIGVGINS--NGEILIADNHNNFNLTIFTQD-G-Q  239 (286)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT-------TSCSEEEEEECT--TCCEEEEECSSSCEEEEECTT-S-C
T ss_pred             CCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC-------ccCCCcEEEECC--CCCEEEEeCCCCEEEEEECCC-C-C
Confidence            9999988888889999999974 44444433211       013467889987  566778877776 99999965 3 4


Q ss_pred             ceeEEeecCC--ceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          250 PVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       250 ~~~~~~~~~~--~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                      .+..+..+..  .+..++++|+|+++++ +.++.|++|++....
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            4566655432  4778999999986666 679999999986543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.63  E-value=9.2e-14  Score=118.10  Aligned_cols=260  Identities=8%  Similarity=-0.045  Sum_probs=145.7

Q ss_pred             eeeeecC-ccc--EEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           16 RALTFDS-LGL--IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        16 ~l~~~~~-~G~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      +|+.... +|.  |.+|++.++     +.......+.....    ...++++++.|+.++.++.|.+||+.+++....+.
T Consensus        49 ~l~~~~~~~g~~~l~~~d~~~g-----~~~~lt~~~~~~~~----~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           49 KLLFGGAFDGPWNYYLLDLNTQ-----VATQLTEGRGDNTF----GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             EEEEEECTTSSCEEEEEETTTC-----EEEECCCSSCBCSS----SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEcCCCCceEEEEeCCCC-----ceEEeeeCCCCCcc----ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            3555554 674  777777765     33222222221111    12356677789999999999999998887654433


Q ss_pred             ccCCCCCCCCCCCeeeeec-ccccccccCCCCceEEEE----------------------ecCCcEEEEEcccccccccc
Q 020454           93 NAGDSGAQPEDDGIVGLHL-FKRQREESSSRSRTLLTC----------------------TTKGKASMRSIEVTKVSAES  149 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~l~~~----------------------~~~g~v~i~~~~~~~~~~~~  149 (326)
                      .        +...+....+ ..       +++..++..                      ..+..|++|++....     
T Consensus       120 ~--------~~~~~~~~~~~~~-------~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----  179 (388)
T 3pe7_A          120 V--------PAEWVGYGTWVAN-------SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----  179 (388)
T ss_dssp             C--------CTTEEEEEEEEEC-------TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----
T ss_pred             c--------hhhcccccceeEC-------CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-----
Confidence            2        1122221221 11       022333321                      123456666654322     


Q ss_pred             ccceEEEEEccCCCceEEEEEcC-CCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          150 SCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                         ...+..  ....+..+.|+| +++.|+....+      ..|.++|+..++... +..+..       ...+....|+
T Consensus       180 ---~~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~-------~~~~~~~~~s  246 (388)
T 3pe7_A          180 ---STVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAE-------GESCTHEFWV  246 (388)
T ss_dssp             ---EEEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCT-------TEEEEEEEEC
T ss_pred             ---eEEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCC-------CcccccceEC
Confidence               111111  234688999999 99888766553      368888876554322 211110       1246678899


Q ss_pred             ecCCCcEEEEEeC-C----CeEEEEeCCCCCC-ceeEEeecCC---ceEEEEecCCCCeEEEE---------cCCCcEEE
Q 020454          223 SIDDHRKFVAGTN-D----HQVRLYDTSAQRR-PVMSFDFRET---PIKAVAEEPDSFNIYIG---------NGSGDLAS  284 (326)
Q Consensus       223 p~~~~~~l~~~~~-d----g~v~iwd~~~~~~-~~~~~~~~~~---~i~~v~~s~~~~~l~~g---------~~dg~v~i  284 (326)
                      |  +++.|+..+. +    ..|++||+.+++. .+..+..+..   ....++|+|||+.|+..         ..+..|++
T Consensus       247 p--dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          247 P--DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             T--TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             C--CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            8  5555654332 2    2499999987632 1222221000   01123799999988853         45668999


Q ss_pred             EECCCCeEEEEEcceecc-----------eEEEEEECCCCCEEEEecc
Q 020454          285 VDIRTGKLLGCFIGKCSG-----------SIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       285 wd~~~~~~~~~~~~~~~~-----------~v~~l~~~p~~~~l~s~s~  321 (326)
                      ||+.+++.. .+..+ ..           .+.+++|+|+++.|+..+.
T Consensus       325 ~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          325 FNMKNGTQH-RVARH-DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             EETTTTEEE-EEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             EeccCCceE-Eeccc-cCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            999988764 44444 44           4788999999998876653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.62  E-value=3.7e-13  Score=113.57  Aligned_cols=242  Identities=12%  Similarity=0.060  Sum_probs=142.2

Q ss_pred             eeeeecCcccEEEEEec-CCcCCCcceeeeccC--CCCCceEEEEEeeeCCCCCe--EEEEe-------------cCCcE
Q 020454           16 RALTFDSLGLIKVIEAR-GEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPL--LAVAR-------------KNGLT   77 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--l~~g~-------------~dg~i   77 (326)
                      +|++++.+ .|++|++. .+     ++......  ......     ...++++++  ++++.             .+|++
T Consensus        53 ~l~~~~~~-~v~~~~~~~~g-----~~~~~~~~~~~g~~~~-----~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v  121 (365)
T 1jof_A           53 NIYGAAMK-KWSSFAVKSPT-----EIVHEASHPIGGHPRA-----NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             EEEEEEBT-EEEEEEEEETT-----EEEEEEEEECCSSGGG-----GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             EEEEEccc-eEEEEEECCCC-----CEEEeeEeecCCCCcc-----EEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence            35666665 89999987 44     22211111  111111     223455663  44443             68999


Q ss_pred             EEEecc-ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccc-cccccccccceE
Q 020454           78 DILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEV-TKVSAESSCSTV  154 (326)
Q Consensus        78 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~-~~~~~~~~~~~~  154 (326)
                      .+|++. +++....+..+.    ..+...+.++.+.+        ++..++++. .++.|.+|+++. ...      ..+
T Consensus       122 ~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~sp--------dG~~l~~~~~~~~~v~~~~~~~~g~~------~~~  183 (365)
T 1jof_A          122 NVFSVSETGKLEKNVQNYE----YQENTGIHGMVFDP--------TETYLYSADLTANKLWTHRKLASGEV------ELV  183 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEE----CCTTCCEEEEEECT--------TSSEEEEEETTTTEEEEEEECTTSCE------EEE
T ss_pred             EEEccCCCCcCcceEeeEE----eCCCCcceEEEECC--------CCCEEEEEcCCCCEEEEEEECCCCCE------EEe
Confidence            999996 465544333210    01224566677644        445666655 468999999862 210      112


Q ss_pred             EEEEcc-CCCceEEEEEcCCCCEEEEecC-CCeEEEEECC--Cceeee---eecCCCCCCCCcCCCC------ceeeeE-
Q 020454          155 KSWNVC-ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD--KCEKIW---TAKPPPKNSLGIFTPT------WFTSAA-  220 (326)
Q Consensus       155 ~~~~~~-~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~--~~~~~~---~~~~~~~~~~~~~~~~------~v~~~~-  220 (326)
                      ...... +...+..++|+|++++|++++. ++.|.+|++.  +++...   .+........  .+..      .+..++ 
T Consensus       184 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP--DRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC--CBCTTTSSBSEEEEEEE
T ss_pred             eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC--CcccccccccccccEEE
Confidence            223322 2557899999999998877664 6899999865  454321   1221111100  0011      578899 


Q ss_pred             EeecCCCcEEEEEeCC-C-----eEEEEeCCCCCCcee---EEeecCCceEEEEecC---CCCeEEEEcCC-CcEEEEEC
Q 020454          221 FLSIDDHRKFVAGTND-H-----QVRLYDTSAQRRPVM---SFDFRETPIKAVAEEP---DSFNIYIGNGS-GDLASVDI  287 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~d-g-----~v~iwd~~~~~~~~~---~~~~~~~~i~~v~~s~---~~~~l~~g~~d-g~v~iwd~  287 (326)
                      |+|  ++++|+++..+ .     .|.+|++....+...   ....+......++|+|   +|++|++++.+ +.|.+|++
T Consensus       262 ~sp--dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          262 LTF--SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECT--TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ECC--CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            988  56677766543 2     899999863223222   1223444567789999   89999988865 89999998


Q ss_pred             CCC
Q 020454          288 RTG  290 (326)
Q Consensus       288 ~~~  290 (326)
                      ...
T Consensus       340 ~~~  342 (365)
T 1jof_A          340 KDE  342 (365)
T ss_dssp             ETT
T ss_pred             chh
Confidence            766

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=1.6e-12  Score=107.99  Aligned_cols=248  Identities=7%  Similarity=-0.071  Sum_probs=157.1

Q ss_pred             cCcccEEEEEecCCcCCCcceeeecc----CCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454           21 DSLGLIKVIEARGEHGGVPKVVERWG----DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (326)
Q Consensus        21 ~~~G~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~   96 (326)
                      ..++.|.++|..++     ++...+.    ...-......+.+.   .+.+.++...++.|.+||..+++.+..+...  
T Consensus        14 ~~~~~l~~~d~~t~-----~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~--   83 (328)
T 3dsm_A           14 YSNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRITGF--   83 (328)
T ss_dssp             SCCBEEEEEETTTT-----EEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEEECC--
T ss_pred             CCCceEEEEECCCC-----EEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEcCCC--
Confidence            45899999999877     4433221    01111112223332   2345666666899999999999987776421  


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCC----CceEEEEEc
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVD  171 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~  171 (326)
                             ....++++.+        ++ .++++. .++.|.++|.....        ....+.....    .....+++ 
T Consensus        84 -------~~p~~i~~~~--------~g-~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           84 -------TSPRYIHFLS--------DE-KAYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ-  138 (328)
T ss_dssp             -------SSEEEEEEEE--------TT-EEEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE-
T ss_pred             -------CCCcEEEEeC--------CC-eEEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE-
Confidence                   3455666533        33 565555 78999999976433        2233333220    14455666 


Q ss_pred             CCCCEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC----------CeEE
Q 020454          172 ISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVR  240 (326)
Q Consensus       172 ~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----------g~v~  240 (326)
                      .+++++++.. .++.|.++|+.+++.+..+...          .....+.+.|  ++++++++..+          +.|.
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------~~p~~i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~  206 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG----------IQPTSLVMDK--YNKMWTITDGGYEGSPYGYEAPSLY  206 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS----------SCBCCCEECT--TSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----------CCccceEEcC--CCCEEEEECCCccCCccccCCceEE
Confidence            3444444433 4889999999998877665431          1234667776  56666666554          7999


Q ss_pred             EEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE--EcceecceEEEEEECC-CCCEE
Q 020454          241 LYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP-TLPII  316 (326)
Q Consensus       241 iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p-~~~~l  316 (326)
                      ++|..+. +....+... ......++|+|++++|+++..  .|.+||..+++....  +..+ ......++++| ++.+.
T Consensus       207 ~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~ly  282 (328)
T 3dsm_A          207 RIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVY  282 (328)
T ss_dssp             EEETTTT-EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEE
T ss_pred             EEECCCC-eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEE
Confidence            9999876 444455442 236789999999999998766  899999998876421  1211 35688999999 55555


Q ss_pred             EEe
Q 020454          317 ASC  319 (326)
Q Consensus       317 ~s~  319 (326)
                      ++.
T Consensus       283 va~  285 (328)
T 3dsm_A          283 VAD  285 (328)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=9.6e-13  Score=107.66  Aligned_cols=219  Identities=11%  Similarity=-0.035  Sum_probs=142.9

Q ss_pred             eCCCCC-eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           61 DSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        61 ~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      +++.++ +++++..++.|..|+..++  ...+..        ....+.++.+.+        ++..+++...++.|.+|+
T Consensus        35 ~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~--------~~~~~~~l~~~~--------dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           35 YVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH--------PSHHQNGHCLNK--------QGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             EEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES--------SCSSEEEEEECT--------TCCEEEEETTTTEEEEEC
T ss_pred             EeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC--------CCCCcceeeECC--------CCcEEEEecCCCeEEEEc
Confidence            344555 7888889999999999766  344432        224567777543        344444444568899998


Q ss_pred             ccccccccccccceEEEEE-c---cCCCceEEEEEcCCCCEEEE----ec-------------CCCeEEEEECCCceeee
Q 020454          140 IEVTKVSAESSCSTVKSWN-V---CASGTIAFSKVDISEKFSLF----GG-------------KGVEVNVWDLDKCEKIW  198 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~s----g~-------------~d~~i~iwd~~~~~~~~  198 (326)
                      .....         +..+. .   .....+..++++|+|+++++    |.             ..+.|..++.. ++...
T Consensus        97 ~~~g~---------~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (296)
T 3e5z_A           97 EPGGE---------WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA  166 (296)
T ss_dssp             STTCC---------EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE
T ss_pred             CCCCc---------EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE
Confidence            64322         11111 0   11234667999999998887    33             13456666654 33322


Q ss_pred             eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc---eeEEeecCCceEEEEecCCCCeEEE
Q 020454          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYI  275 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~i~~v~~s~~~~~l~~  275 (326)
                       +...         ......++|+|  +++.+++.+.++.|.+||+......   ...+..+...+..++++++|+++++
T Consensus       167 -~~~~---------~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~  234 (296)
T 3e5z_A          167 -PIRD---------RVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS  234 (296)
T ss_dssp             -EECC---------CSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred             -eecC---------CCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence             2111         13467889988  5557777788899999998732132   1222234455678999999986665


Q ss_pred             EcCCCcEEEEECCCCeEEEEEcceecceEEEEEE-CCCCCEEEEeccCcc
Q 020454          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR-HPTLPIIASCGFLEA  324 (326)
Q Consensus       276 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~p~~~~l~s~s~D~~  324 (326)
                      .  ++.|.+||.. ++.+..+..+ .. +.+++| .|+++.|+.++.++-
T Consensus       235 ~--~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          235 A--GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             E--TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCEEEEEETTEE
T ss_pred             c--CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCEEEEEcCCeE
Confidence            5  7899999986 7888888876 66 999999 589988888887753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.59  E-value=2.3e-13  Score=114.61  Aligned_cols=220  Identities=12%  Similarity=0.077  Sum_probs=133.4

Q ss_pred             cCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec----------CCcEEEEEccc
Q 020454           73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----------KGKASMRSIEV  142 (326)
Q Consensus        73 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----------~g~v~i~~~~~  142 (326)
                      .|+.|.+||..+++.+..+..        +..+  ++++.+        ++.+++++..          ++.|.+||...
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~--------g~~p--~i~~sp--------dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPT--------AFNG--HVQVSN--------DGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEEC--------CEEE--EEEECT--------TSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             ccCeEEEEECCCCeEEEEecC--------CCCC--ceEECC--------CCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            478999999988888766552        2233  566544        5567777763          56799999754


Q ss_pred             cccccccccceEEEEEcc-----CCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeee-ecCCCC--------C
Q 020454          143 TKVSAESSCSTVKSWNVC-----ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT-AKPPPK--------N  206 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~-~~~~~~--------~  206 (326)
                      ..        .+......     .......++++|++++|+++..  ++.|.+||+.+++.+.. +.....        .
T Consensus        91 ~~--------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~  162 (361)
T 2oiz_A           91 LT--------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNR  162 (361)
T ss_dssp             CC--------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTS
T ss_pred             Cc--------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCC
Confidence            33        23333321     1234667899999999988764  57899999999887665 332110        0


Q ss_pred             -C--CCcCCCCceeeeE----------------Eeec---------CCCcEEEEEeCCCeEEEEeCCCCCCce-eEEeec
Q 020454          207 -S--LGIFTPTWFTSAA----------------FLSI---------DDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFR  257 (326)
Q Consensus       207 -~--~~~~~~~~v~~~~----------------~~p~---------~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~  257 (326)
                       .  ........+.-+.                |.+.         .++..++..+.++.|.++|+......+ ..+...
T Consensus       163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~  242 (361)
T 2oiz_A          163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLL  242 (361)
T ss_dssp             SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred             CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccccc
Confidence             0  0000000000011                1110         011233344455667777765431111 111110


Q ss_pred             C----------CceEEEEecCCCCeEEEEcC-----------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454          258 E----------TPIKAVAEEPDSFNIYIGNG-----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       258 ~----------~~i~~v~~s~~~~~l~~g~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                      .          .....++|+|+++.++++..           .+.|.+||+.+++.+.++..+ .  +.+|+|+|++++|
T Consensus       243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~spdg~~l  319 (361)
T 2oiz_A          243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQQRNLM  319 (361)
T ss_dssp             CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEETTTTEE
T ss_pred             CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECCCCCEE
Confidence            0          11112689999888887643           348999999999999999976 5  9999999999999


Q ss_pred             EEecc
Q 020454          317 ASCGF  321 (326)
Q Consensus       317 ~s~s~  321 (326)
                      ++++.
T Consensus       320 ~v~n~  324 (361)
T 2oiz_A          320 LTLDG  324 (361)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            98875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.58  E-value=7.1e-12  Score=104.22  Aligned_cols=223  Identities=11%  Similarity=0.056  Sum_probs=141.6

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC----CcEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASM  137 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~----g~v~i  137 (326)
                      ++++.+++++..++.|.+||..+++......        .....+.++.+.+        ++..+++...+    +.|.+
T Consensus        53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~i~~~~--------dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFV--------SHKANPAAIKIHK--------DGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEEEEEE--------CSSSSEEEEEECT--------TSCEEEEECTTSSSCCEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCcEEEEee--------CCCCCcceEEECC--------CCcEEEEeCCCCCCCceEEE
Confidence            3556667778889999999998777644332        1124677777643        33444444444    58888


Q ss_pred             EEccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecC------CCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          138 RSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                      |+.+....        ..+.. ......+..+.++|+++++++...      .+.|..+|..+++.......        
T Consensus       117 ~d~~~~~~--------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------  180 (333)
T 2dg1_A          117 ATENGDNL--------QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--------  180 (333)
T ss_dssp             ECTTSCSC--------EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--------
T ss_pred             EeCCCCEE--------EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--------
Confidence            88654321        11111 123456899999999988877654      35566677655443221111        


Q ss_pred             CCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCCCceeEE------eec-CCceEEEEecCCCCeEEEEcCCCcE
Q 020454          211 FTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVMSF------DFR-ETPIKAVAEEPDSFNIYIGNGSGDL  282 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~------~~~-~~~i~~v~~s~~~~~l~~g~~dg~v  282 (326)
                        ...+..++|+|  +++.+ ++.+.++.|.+||+......+..+      ... ...+..++++++|+++++...++.|
T Consensus       181 --~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          181 --ISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             --ESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             --CCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence              02366888887  45444 555668899999986421222211      111 1367889999999887777778899


Q ss_pred             EEEECCCCeEEEEEcceecc------eEEEEEECCCCCEEEEeccC
Q 020454          283 ASVDIRTGKLLGCFIGKCSG------SIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~------~v~~l~~~p~~~~l~s~s~D  322 (326)
                      .+||. +++.+..+..+ ..      .+.+++|+|++..|+.++.+
T Consensus       257 ~~~d~-~g~~~~~~~~~-~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          257 LVFNK-RGYPIGQILIP-GRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECT-TSCEEEEEECT-TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEECC-CCCEEEEEEcC-CCccccccCcceEEECCCCCEEEEEeCc
Confidence            99998 56677666543 32      68999999998777665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.58  E-value=8.4e-13  Score=121.74  Aligned_cols=273  Identities=8%  Similarity=-0.055  Sum_probs=148.8

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc-eEEEEEeeeCCCCCeEEEEecC---------CcEEEEecccc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN-CVLAASIDDSQNDPLLAVARKN---------GLTDILNPLNG   85 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d---------g~i~i~~~~~~   85 (326)
                      +++..+ +|.|++|++.++     +....+..+.... .+..-.+..++++++|+.++.+         +.+.+||+.++
T Consensus        29 ~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~  102 (740)
T 4a5s_A           29 EYLYKQ-ENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (740)
T ss_dssp             EEEEEE-TTEEEEEETTTC-----CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             cEEEEc-CCcEEEEECCCC-----ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC
Confidence            444444 899999999877     2211222221111 1101112346677889998886         56679999888


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccce-EEEEEccC---
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCA---  161 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~-~~~~~~~~---  161 (326)
                      +... +.        .+.+.+....+.+        ++..|+.+ .++.|++|++.......-..++. -.+++-..   
T Consensus       103 ~~~~-l~--------~~~~~~~~~~~SP--------dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v  164 (740)
T 4a5s_A          103 QLIT-EE--------RIPNNTQWVTWSP--------VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV  164 (740)
T ss_dssp             EECC-SS--------CCCTTEEEEEECS--------STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred             cEEE-cc--------cCCCcceeeEECC--------CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence            7643 22        2234566666644        55566555 67899999876533211111110 00111000   


Q ss_pred             -----CCceEEEEEcCCCCEEEEecCCC------------------------------------eEEEEECCC---ce--
Q 020454          162 -----SGTIAFSKVDISEKFSLFGGKGV------------------------------------EVNVWDLDK---CE--  195 (326)
Q Consensus       162 -----~~~v~~~~~~~~~~~l~sg~~d~------------------------------------~i~iwd~~~---~~--  195 (326)
                           -.....+.|+|||+.||.++.|.                                    .|.+||+.+   ++  
T Consensus       165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred             ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence                 01223588999999998875332                                    466677766   52  


Q ss_pred             eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe----CCCeEEEEeCCCCCC-----ceeEE--eecCCceE--
Q 020454          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----NDHQVRLYDTSAQRR-----PVMSF--DFRETPIK--  262 (326)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~----~dg~v~iwd~~~~~~-----~~~~~--~~~~~~i~--  262 (326)
                      ....+.....   ...+..++..++|+|  +++.++...    .+..|++||+.+++.     .+..+  ..+...+.  
T Consensus       245 ~~~~l~~~~~---~~~~~~~~~~~~wsp--dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          245 TSIQITAPAS---MLIGDHYLCDVTWAT--QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             CEEEECCCHH---HHTSCEEEEEEEEEE--TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             eEEEecCCcc---CCCCCeEEEEEEEeC--CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence            1111111000   001335688999999  565555443    234799999987630     12222  33444443  


Q ss_pred             ---EEEecCCCCeEE-EEc-CCC--cEEEEECCCCeEEEEEcceecceEEEEE-ECCCCCEEEEec
Q 020454          263 ---AVAEEPDSFNIY-IGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIA-RHPTLPIIASCG  320 (326)
Q Consensus       263 ---~v~~s~~~~~l~-~g~-~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~-~~p~~~~l~s~s  320 (326)
                         .++|+|||+.|+ ..+ .+|  .|++||+.+++... +... .-.|..+. ++ .+.+++++.
T Consensus       320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~~~~d-~~~i~f~~~  382 (740)
T 4a5s_A          320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGIEALT-SDYLYYISN  382 (740)
T ss_dssp             SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEEEEEC-SSEEEEEES
T ss_pred             cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEEEEEe-CCEEEEEEe
Confidence               678999999876 554 444  58888988765543 3322 34455543 43 333444444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=1.2e-11  Score=99.88  Aligned_cols=238  Identities=11%  Similarity=0.025  Sum_probs=156.8

Q ss_pred             CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      .|.-.+++++.++.|++||.+++     ++..++..+.. .....+.+  .+++++++  +.++.|..||. +++.+..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG-----~~~w~~~~~~~-~~~~~~~~--~pdG~ilv--s~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK-----EIVWEYPLEKG-WECNSVAA--TKAGEILF--SYSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT-----EEEEEEECCTT-CCCCEEEE--CTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC-----eEEEEeCCCcc-CCCcCeEE--CCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence            35578999999999999999777     66555554321 11112222  33555666  55788999999 88888877


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEEEccccccccccccceEEEEEccCC-----Cce
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCAS-----GTI  165 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v  165 (326)
                      ..       .....+.+....+        +++.+++.+. ++.+..++.+.         ..+..+.....     ...
T Consensus        72 ~~-------~~~~~~~~~~~~~--------dG~~lv~~~~~~~~v~~vd~~G---------k~l~~~~~~~~~~~~~~~~  127 (276)
T 3no2_A           72 AA-------PAGCEMQTARILP--------DGNALVAWCGHPSTILEVNMKG---------EVLSKTEFETGIERPHAQF  127 (276)
T ss_dssp             EC-------CTTCEEEEEEECT--------TSCEEEEEESTTEEEEEECTTS---------CEEEEEEECCSCSSGGGSC
T ss_pred             cC-------CCCccccccEECC--------CCCEEEEecCCCCEEEEEeCCC---------CEEEEEeccCCCCcccccc
Confidence            74       1123455455443        5566666665 56655554211         12333332111     134


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      ..+++.++++++++...++.|.+||.. ++.++++....          ++.++.+.+  ++++++++..+++|..+|..
T Consensus       128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~----------~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          128 RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG----------TPFSSAFLD--NGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS----------CCCEEEECT--TSCEEEECBTTSEEEEECTT
T ss_pred             cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC----------CccceeEcC--CCCEEEEeCCCCeEEEEeCc
Confidence            456778899999999999999999998 99988876531          233555555  56688888888899999999


Q ss_pred             CCCCceeEEeecC------CceEEEEecCCCCeEEEEcCC--------CcEEEEEC-CCCeEEEEEcc
Q 020454          246 AQRRPVMSFDFRE------TPIKAVAEEPDSFNIYIGNGS--------GDLASVDI-RTGKLLGCFIG  298 (326)
Q Consensus       246 ~~~~~~~~~~~~~------~~i~~v~~s~~~~~l~~g~~d--------g~v~iwd~-~~~~~~~~~~~  298 (326)
                      ++ +.+.++....      ..+..++..++|+.+++....        +..+++.+ ++++.+.+|..
T Consensus       195 tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          195 SN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             TC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             CC-cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            87 5677775432      237888889999988876321        23456666 57888888764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=3.9e-12  Score=102.46  Aligned_cols=224  Identities=7%  Similarity=-0.102  Sum_probs=140.0

Q ss_pred             CCCCeEE-EEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           63 QNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        63 ~~~~~l~-~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      +++.+++ +...++.|.+|+..++.. ..+..       .+...+.++++.+        ++. ++.+..++.|.+|+.+
T Consensus        33 ~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~-------~~~~~p~~i~~~~--------~g~-l~v~~~~~~i~~~d~~   95 (270)
T 1rwi_B           33 SAGNVYVTSEGMYGRVVKLATGSTGT-TVLPF-------NGLYQPQGLAVDG--------AGT-VYVTDFNNRVVTLAAG   95 (270)
T ss_dssp             TTCCEEEEECSSSCEEEEECC------EECCC-------CSCCSCCCEEECT--------TCC-EEEEETTTEEEEECTT
T ss_pred             CCCCEEEEccCCCCcEEEecCCCccc-ceEee-------CCcCCcceeEECC--------CCC-EEEEcCCCEEEEEeCC
Confidence            3445555 336789999999755443 22111       1113455566533        333 5555448888888855


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                      ...         +..+.......+..++++++++++++...++.|.+|+..+.........         ....+.++++
T Consensus        96 ~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~~i~~  157 (270)
T 1rwi_B           96 SNN---------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------GLNDPDGVAV  157 (270)
T ss_dssp             CSC---------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------SCCSCCCEEE
T ss_pred             Cce---------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------cCCCceeEEE
Confidence            322         1122222235688999999999888777788999997655433221111         0123567888


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~  301 (326)
                      .|  +++++++...++.|.+||.... ........+...+..++++++|..+++...++.|.+||............+ .
T Consensus       158 ~~--~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~  233 (270)
T 1rwi_B          158 DN--SGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-L  233 (270)
T ss_dssp             CT--TCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS-C
T ss_pred             eC--CCCEEEEECCCCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC-C
Confidence            87  4557777777889999998865 222211222356889999999977777777889999998765443222222 3


Q ss_pred             ceEEEEEECCCCCEEEEeccCccC
Q 020454          302 GSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       302 ~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ..+.+++++|++.++++.+.++.+
T Consensus       234 ~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          234 NTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CCceeEEECCCCCEEEEECCCCEE
Confidence            568999999999988888877654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.55  E-value=2.1e-12  Score=117.55  Aligned_cols=233  Identities=10%  Similarity=-0.000  Sum_probs=137.8

Q ss_pred             eeeCCCCCe-EEEEec-CCcEEEEecc--c-cceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-
Q 020454           59 IDDSQNDPL-LAVARK-NGLTDILNPL--N-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-  132 (326)
Q Consensus        59 ~~~~~~~~~-l~~g~~-dg~i~i~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-  132 (326)
                      +..++++++ |+.++. +..|.++++.  . ++. ..+....   ...+...+..+.+.+        ++..|+.++.+ 
T Consensus        84 ~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~---~~~~~~~~~~~~~sp--------Dg~~l~~~~~~~  151 (662)
T 3azo_A           84 GVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVS---AVGGGLRWADPVLLP--------ERGEVWCMAEEF  151 (662)
T ss_dssp             EECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCC---CSTTCEEEEEEEEET--------TTTEEEEEEEEE
T ss_pred             eeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCc---cCCCCccccCcEECC--------CCCEEEEEEecc
Confidence            333355666 665543 5667777764  2 433 2222100   001334566677655        56778888776 


Q ss_pred             ---------CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC--------CeEEEEECC-Cc
Q 020454          133 ---------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLD-KC  194 (326)
Q Consensus       133 ---------g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d--------~~i~iwd~~-~~  194 (326)
                               ..|++|+++....   ...+..+.........+..++|+|+|++|+.++.+        ..|.+||+. ++
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAA---ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTT---TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             cCCCCCCceeEEEEEECCCCcc---ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence                     5788888764100   00001111110223467778999999999877754        379999998 46


Q ss_pred             ---eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--eEEEEeCCCCCCceeEEeecCCc---------
Q 020454          195 ---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFRETP---------  260 (326)
Q Consensus       195 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~---------  260 (326)
                         +.......+         ...+..+.|+|  ++++++++..++  .|.+||+.++ + ...+..+...         
T Consensus       229 ~~~~~~~l~~~~---------~~~~~~~~~sp--dg~l~~~~~~~~~~~l~~~~~~~~-~-~~~l~~~~~~~~~p~w~~~  295 (662)
T 3azo_A          229 RFADTRTLLGGP---------EEAIAQAEWAP--DGSLIVATDRTGWWNLHRVDPATG-A-ATQLCRREEEFAGPLWTPG  295 (662)
T ss_dssp             CEEEEEEEEEET---------TBCEEEEEECT--TSCEEEEECTTSSCEEEEECTTTC-C-EEESSCCSSBSSCCCCSTT
T ss_pred             cccccEEeCCCC---------CceEcceEECC--CCeEEEEECCCCCeEEEEEECCCC-c-eeecccccccccCcccccc
Confidence               332222211         14577889998  556788888888  6666776544 3 2233222111         


Q ss_pred             eEEEEecCCCCeEEEEcCCCcEEEE--ECCCCeEEEEEcceecceEEEE-EECCCCCEEEEeccC
Q 020454          261 IKAVAEEPDSFNIYIGNGSGDLASV--DIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGFL  322 (326)
Q Consensus       261 i~~v~~s~~~~~l~~g~~dg~v~iw--d~~~~~~~~~~~~~~~~~v~~l-~~~p~~~~l~s~s~D  322 (326)
                      +..++|+|+++++++++. +.++||  |+.+++ +..+..| .+.+..+ +++++.-++++++.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~s~~~~~~~~~~~~~~  357 (662)
T 3azo_A          296 MRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP-WTEWAATLTVSGTRAVGVAASPR  357 (662)
T ss_dssp             CCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS-CCEEEEEEEEETTEEEEEEEETT
T ss_pred             CceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC-CCeEEEEEecCCCEEEEEEcCCC
Confidence            467899999999999998 999999  655565 5667776 7778877 665444344444443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=7.6e-13  Score=110.90  Aligned_cols=179  Identities=9%  Similarity=0.039  Sum_probs=125.3

Q ss_pred             CeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc---cccceEEEEEccCCCceEEEEEcCCCCEEEEec
Q 020454          105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (326)
Q Consensus       105 ~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~  181 (326)
                      ++..++..+        ..+.+++++.+ .+.+|+++.......   ..-.......  ... |..++|  ++++|+++ 
T Consensus        39 ~~nlLais~--------~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~-  103 (388)
T 1xip_A           39 SLQNLDISN--------SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS-  103 (388)
T ss_dssp             CCBCEEEET--------TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE-
T ss_pred             cccEEEEcC--------CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE-
Confidence            455566554        55677777776 556699765431100   0011212223  345 999999  88999998 


Q ss_pred             CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCce
Q 020454          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (326)
Q Consensus       182 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i  261 (326)
                      .++.|++||+++.........+.         ..+.++.+.+.    .+++++.||.|.+||+... ... .   ....|
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~~~~---------~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~-~~~-~---~~~~V  165 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVTSFE---------KPVFQLKNVNN----TLVILNSVNDLSALDLRTK-STK-Q---LAQNV  165 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECS---------SCEEEEEECSS----EEEEEETTSEEEEEETTTC-CEE-E---EEESE
T ss_pred             cCCcEEEEEchhhhccCccceee---------cceeeEEecCC----CEEEEECCCCEEEEEccCC-ccc-c---ccCCc
Confidence            88999999998755433333322         23556666542    3888999999999999966 322 2   33579


Q ss_pred             EEEEecCCCCeEEEEcCCCcEEEEECCCCeE--EEEE------c---ceecceEEEEEECCCCCEEEEe
Q 020454          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCF------I---GKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       262 ~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~--~~~~------~---~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ++++|||+|  ++.|..||.+++|+...++.  ..++      .   +| ...|.+|.|.+++.++++=
T Consensus       166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEE
Confidence            999999999  77899999999999988776  5566      2   35 7789999999999888763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=3.1e-11  Score=100.19  Aligned_cols=245  Identities=15%  Similarity=0.079  Sum_probs=152.6

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeeeeccc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ..++...+|.|.+||..++     ++..++.....   ...+.+...  + .++++. .++.|.+||..++++...+..-
T Consensus        56 lyv~~~~~~~v~viD~~t~-----~~~~~i~~~~~---p~~i~~~~~--g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g  124 (328)
T 3dsm_A           56 GWIVVNNSHVIFAIDINTF-----KEVGRITGFTS---PRYIHFLSD--E-KAYVTQIWDYRIFIINPKTYEITGYIECP  124 (328)
T ss_dssp             EEEEEGGGTEEEEEETTTC-----CEEEEEECCSS---EEEEEEEET--T-EEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEcCCCEEEEEECccc-----EEEEEcCCCCC---CcEEEEeCC--C-eEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence            4455556789999999877     55545532222   223333222  3 355555 7899999999988877666531


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEe--cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~--~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                      ..   ........++.+ .         ++.++++.  .++.|.++|.....        .++....  ......+.++|
T Consensus       125 ~~---~~~~~~p~~i~~-~---------~~~lyv~~~~~~~~v~viD~~t~~--------~~~~i~~--g~~p~~i~~~~  181 (328)
T 3dsm_A          125 DM---DMESGSTEQMVQ-Y---------GKYVYVNCWSYQNRILKIDTETDK--------VVDELTI--GIQPTSLVMDK  181 (328)
T ss_dssp             TC---CTTTCBCCCEEE-E---------TTEEEEEECTTCCEEEEEETTTTE--------EEEEEEC--SSCBCCCEECT
T ss_pred             Cc---cccCCCcceEEE-E---------CCEEEEEcCCCCCEEEEEECCCCe--------EEEEEEc--CCCccceEEcC
Confidence            10   000113344554 2         34555554  48899999976533        2333333  33456788999


Q ss_pred             CCCEEEEecCC----------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          173 SEKFSLFGGKG----------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       173 ~~~~l~sg~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      ++++++++..+          +.|.++|..+++....+....        ......++|+|  +++.|.++..  .|.+|
T Consensus       182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--------g~~p~~la~~~--d~~~lyv~~~--~v~~~  249 (328)
T 3dsm_A          182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--------GDWPSEVQLNG--TRDTLYWINN--DIWRM  249 (328)
T ss_dssp             TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--------TCCCEEEEECT--TSCEEEEESS--SEEEE
T ss_pred             CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--------CCCceeEEEec--CCCEEEEEcc--EEEEE
Confidence            99877776654          789999999888765543211        12367889988  4446766654  89999


Q ss_pred             eCCCCCCceeE-EeecCCceEEEEecCCCCeEE-EE----cCCCcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454          243 DTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIY-IG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (326)
Q Consensus       243 d~~~~~~~~~~-~~~~~~~i~~v~~s~~~~~l~-~g----~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~  309 (326)
                      |+.+.+..... +.........++++|++..|+ +.    ..++.|.+||.. ++.+.++..  ...-..++|
T Consensus       250 d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~--G~~P~~~~~  319 (328)
T 3dsm_A          250 PVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV--GIIPGAFCW  319 (328)
T ss_dssp             ETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE--EESEEEEEE
T ss_pred             ECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe--ccCcceEEE
Confidence            99866321111 111235678999999554454 55    568899999998 998888873  223455555

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=5.1e-11  Score=105.56  Aligned_cols=273  Identities=12%  Similarity=0.064  Sum_probs=168.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecc--ccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~--~~~~~~~~~   92 (326)
                      ..+++...+|.|.|+|..++     ++..++......   ..  ...+++++++++++.|+.|.+||+.  +++.+..+.
T Consensus       168 ~~~V~~~~~~~V~viD~~t~-----~v~~~i~~g~~p---~~--v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGYAV---HI--SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----CEEEEEECSSCE---EE--EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCC-----eEEEEEeCCCCc---cc--eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            56778888999999999887     555454432221   12  2335567789999999999999995  666666555


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccc-----------------------
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAE-----------------------  148 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~-----------------------  148 (326)
                      .        + ....++.+.+-.    ++++.+++++ ..++.+.++|....+....                       
T Consensus       238 ~--------G-~~P~~ia~s~~~----~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~  304 (567)
T 1qks_A          238 I--------G-SEARSIETSKME----GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  304 (567)
T ss_dssp             C--------C-SEEEEEEECCST----TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             c--------C-CCCceeEEcccc----CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence            2        1 224556654100    0034455544 4568999988654322100                       


Q ss_pred             -c-----------ccceEEEEEccC-----------CCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecC-C
Q 020454          149 -S-----------SCSTVKSWNVCA-----------SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP-P  203 (326)
Q Consensus       149 -~-----------~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~-~  203 (326)
                       +           ..+.+.+++...           ......+.|+|++++|+++. .++.|.++|+.+++.+..+.- .
T Consensus       305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg  384 (567)
T 1qks_A          305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG  384 (567)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence             0           012233333221           22345678999999876654 578999999999987665532 1


Q ss_pred             CCCCCCcCCCCceeeeEE-eecCCCcEEEEEe-CCCeEEEEeCCCCC------CceeEEeecCCceEEEEecCCCCeEEE
Q 020454          204 PKNSLGIFTPTWFTSAAF-LSIDDHRKFVAGT-NDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDSFNIYI  275 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~-~p~~~~~~l~~~~-~dg~v~iwd~~~~~------~~~~~~~~~~~~i~~v~~s~~~~~l~~  275 (326)
                      .     ..++.  ....| +|. .+..+++.. .++.|.++|..+.+      +.+.++......-..+..+|+++++++
T Consensus       385 ~-----~Phpg--~g~~~~~p~-~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v  456 (567)
T 1qks_A          385 Q-----TPHPG--RGANFVHPT-FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  456 (567)
T ss_dssp             S-----SBCCT--TCEEEEETT-TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             c-----CCCCc--cceeeECCC-CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence            1     11222  12233 442 344555554 46899999988621      346666654333345788999999998


Q ss_pred             EcC-------CCcEEEEECCCC-----eE-EEEEc--------ceecceEEEEEECCCCCEEEEe
Q 020454          276 GNG-------SGDLASVDIRTG-----KL-LGCFI--------GKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       276 g~~-------dg~v~iwd~~~~-----~~-~~~~~--------~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ...       .+.|.+||+.+.     .. ...+.        .. ...+..+.|+|+|+.+..+
T Consensus       457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG-QPRVVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS-CCEEEEEEECTTSSEEEEE
T ss_pred             ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC-CcceEeeeECCCCCEEEEE
Confidence            763       459999999876     21 12332        11 3478999999999877665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=1.1e-10  Score=107.19  Aligned_cols=224  Identities=10%  Similarity=-0.022  Sum_probs=146.0

Q ss_pred             EeeeCCCCCeEEEEecCC-----cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           58 SIDDSQNDPLLAVARKNG-----LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      ...+++++++|+.+..++     .|++||+.+++.+.....       .  ..+.++.+.+        ++..|+.++.+
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-------~--~~~~~~~wsp--------Dg~~l~~~~~~  191 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------R--VKFSCMAWTH--------DGKGMFYNAYP  191 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------E--ECSCCEEECT--------TSSEEEEEECC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-------C--cccceEEEEe--------CCCEEEEEEEC
Confidence            345567777888876654     899999998887553221       0  1244566654        55678877776


Q ss_pred             Cc----------------EEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecC-----CCeEEEEE
Q 020454          133 GK----------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGK-----GVEVNVWD  190 (326)
Q Consensus       133 g~----------------v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~-----d~~i~iwd  190 (326)
                      +.                |++|++.....      ....++... +...+..+.++|++++|+.++.     +..|.+||
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d  265 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             CccccccccccccCCCCEEEEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence            65                88888754321      112333332 2344788999999998887654     57899999


Q ss_pred             CCC------ce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----CCeEEEEeCCCCCC-ceeEEeecC
Q 020454          191 LDK------CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRR-PVMSFDFRE  258 (326)
Q Consensus       191 ~~~------~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~~~~~~  258 (326)
                      +.+      +. ....+..+.         ..+.. .|+|.  +..|+..+.    .+.|.+||+.+... ....+..+.
T Consensus       266 ~~~~~~~~~~~~~~~~l~~~~---------~~~~~-~~s~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          266 LQQESNGITGILKWVKLIDNF---------EGEYD-YVTNE--GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             GGGSSSSSCSSCCCEEEECSS---------SSCEE-EEEEE--TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             CcccccccCCccceEEeeCCC---------CcEEE-EEecc--CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence            976      42 233333222         11222 46663  445555443    33799999886521 134444443


Q ss_pred             C--ceEEEEecCCCCeEEEEcCCCc--EEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          259 T--PIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       259 ~--~i~~v~~s~~~~~l~~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      .  .+..++|++++.++++...++.  |.+||+.+++.+..+..+ .+.|..+.++|+++.|+
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEE
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEE
Confidence            3  6888999877778888888884  667788788888888877 88899999999886554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.50  E-value=2.2e-12  Score=117.52  Aligned_cols=149  Identities=17%  Similarity=0.024  Sum_probs=105.2

Q ss_pred             CCceEEEEEcCCCCEEEEecCC----------CeEEEEECCC------ceeeeeec-CCCCCCCCcCCCCceeeeEEeec
Q 020454          162 SGTIAFSKVDISEKFSLFGGKG----------VEVNVWDLDK------CEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                      ...+..++|+|+|+.|++++.+          ..|.+||+.+      ++.. .+. .+         ...+..++|+| 
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~---------~~~~~~~~~Sp-  197 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA---------HRFVTGPRLSP-  197 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC---------SSEECCCEECT-
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecC---------CCcccCceECC-
Confidence            3467889999999999988876          5799999987      4432 222 11         24567789998 


Q ss_pred             CCCcEEEEEeCC--------CeEEEEeCC-CCC-CceeEEe-ecCCceEEEEecCCCCeEEEEcCCC--cEEEEECCCCe
Q 020454          225 DDHRKFVAGTND--------HQVRLYDTS-AQR-RPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGK  291 (326)
Q Consensus       225 ~~~~~l~~~~~d--------g~v~iwd~~-~~~-~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg--~v~iwd~~~~~  291 (326)
                       ++++|+..+.+        ..|++||+. ++. .....+. .+...+..++|+|||+++++++.++  .|.+||+.+++
T Consensus       198 -DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          198 -DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             -TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred             -CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence             67788877644        489999998 331 0233333 3467899999999999888888888  67777776776


Q ss_pred             EEEEEcceecce--------EEEEEECCCCCEEEEeccCcc
Q 020454          292 LLGCFIGKCSGS--------IRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       292 ~~~~~~~~~~~~--------v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .......+ ...        +..++|+|++.++++++. +.
T Consensus       277 ~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          277 ATQLCRRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             EEESSCCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred             eeeccccc-ccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence            54433332 222        567899999999998876 54

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.50  E-value=2.5e-12  Score=109.44  Aligned_cols=228  Identities=6%  Similarity=-0.117  Sum_probs=130.9

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeee---eeccccc--------ccccCCCCceEEEE
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG---LHLFKRQ--------REESSSRSRTLLTC  129 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---l~~~~~~--------~~~~~~~~~~l~~~  129 (326)
                      +++++++|+..+.++.|.+|++.+++.......        +......   +.+....        ...-++++..++..
T Consensus        88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~  159 (396)
T 3c5m_A           88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTV--------DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFA  159 (396)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec--------ccccCCCCCEEEeccCCccccccccccccCCCCcceeee
Confidence            466777899999999999999987775443331        1111111   1110000        00000122222222


Q ss_pred             -----ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC-CCCEEEEecCC------CeEEEEECCCceee
Q 020454          130 -----TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKG------VEVNVWDLDKCEKI  197 (326)
Q Consensus       130 -----~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d------~~i~iwd~~~~~~~  197 (326)
                           ..+..|++|++....        ...+.  .....+..+.|+| +++.|+..+.+      ..|.+||+..++..
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~--------~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~  229 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGE--------LEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR  229 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCC--------EEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred             eeccCCCcceEEEEECCCCc--------EEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence                 234566777754322        11122  2345688899999 77766654433      46888888755432


Q ss_pred             eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEEeCCCCCCceeEEeecCCceEEEEecC-CCC
Q 020454          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSF  271 (326)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~  271 (326)
                      .... +.       ....+..+.|+|  +++.|+..+.+     +.|++||+.++ + ...+..... .. +.|+| +|+
T Consensus       230 ~l~~-~~-------~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~-~~-~~~s~~dg~  295 (396)
T 3c5m_A          230 KIKE-HA-------EGESCTHEFWIP--DGSAMAYVSYFKGQTDRVIYKANPETL-E-NEEVMVMPP-CS-HLMSNFDGS  295 (396)
T ss_dssp             ESSC-CC-------TTEEEEEEEECT--TSSCEEEEEEETTTCCEEEEEECTTTC-C-EEEEEECCS-EE-EEEECSSSS
T ss_pred             Eeec-cC-------CCccccceEECC--CCCEEEEEecCCCCccceEEEEECCCC-C-eEEeeeCCC-CC-CCccCCCCc
Confidence            2111 10       012467789998  55566665443     45999999876 3 223322222 33 89999 999


Q ss_pred             eEEEEc----------------CCCcEEEEECCCCeEEEEEcceecc-----------eEEEEEECCCCCEEEEeccC
Q 020454          272 NIYIGN----------------GSGDLASVDIRTGKLLGCFIGKCSG-----------SIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       272 ~l~~g~----------------~dg~v~iwd~~~~~~~~~~~~~~~~-----------~v~~l~~~p~~~~l~s~s~D  322 (326)
                      +++.++                .++.|++||+.+++.. .+..+ ..           .+..++|+|+++.|+.++.+
T Consensus       296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH-STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             EEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             eEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC-CCccccccccccCCCCCceEccCCCeEEEEecC
Confidence            888654                3468999999887653 34433 33           25678999999988877653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=7.2e-10  Score=90.32  Aligned_cols=255  Identities=8%  Similarity=0.027  Sum_probs=155.8

Q ss_pred             eeeeecC-cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           16 RALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~~~-~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ++..++. ++.|.+|+.. +     ++. .+..+........+.++  +++.++++...++.|..|+.. ++. ..+...
T Consensus        27 ~l~v~~~~~~~v~~~d~~-~-----~~~-~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~   95 (299)
T 2z2n_A           27 KVWITQHKANMISCINLD-G-----KIT-EYPLPTPDAKVMCLTIS--SDGEVWFTENAANKIGRITKK-GII-KEYTLP   95 (299)
T ss_dssp             CEEEEETTTTEEEEECTT-C-----CEE-EEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCE-EEEECS
T ss_pred             CEEEEecCCCcEEEEcCC-C-----CeE-EecCCcccCceeeEEEC--CCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC
Confidence            3444443 5677777766 3     221 22212122334444443  345555555668899999985 443 222210


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDIS  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  173 (326)
                            .....+.++...+        ++..+++...++.|..++...          .+..+... ....+..+.++++
T Consensus        96 ------~~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~d~~g----------~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           96 ------NPDSAPYGITEGP--------NGDIWFTEMNGNRIGRITDDG----------KIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             ------STTCCEEEEEECT--------TSCEEEEETTTTEEEEECTTC----------CEEEEECSSTTCCEEEEEECTT
T ss_pred             ------CcCCCceeeEECC--------CCCEEEEecCCceEEEECCCC----------CEEEecCCCCCCCCceEEEcCC
Confidence                  1224566676533        334445555678888887521          22233222 3456889999999


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      +++.++...++.|..||. +++.... ...         ....+.++++.+  +++++++...++.|.+||. ++ . +.
T Consensus       152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~---------~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~-~g-~-~~  216 (299)
T 2z2n_A          152 NALWFTENQNNAIGRITE-SGDITEFKIPT---------PASGPVGITKGN--DDALWFVEIIGNKIGRITT-SG-E-IT  216 (299)
T ss_dssp             SCEEEEETTTTEEEEECT-TCCEEEEECSS---------TTCCEEEEEECT--TSSEEEEETTTTEEEEECT-TC-C-EE
T ss_pred             CCEEEEeCCCCEEEEEcC-CCcEEEeeCCC---------CCCcceeEEECC--CCCEEEEccCCceEEEECC-CC-c-EE
Confidence            988887777889999998 5554322 111         113466888876  4657666667889999999 55 3 33


Q ss_pred             EEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-EcceecceEEEEEECCCCCEEEEeccCc
Q 020454          253 SFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       253 ~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .+.  .....+..++++++|+..++...++.|..||. +++.... +..+ ...+.++++ +++.+.++.+.++
T Consensus       217 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~~~~  287 (299)
T 2z2n_A          217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAMECDK  287 (299)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEETTTE
T ss_pred             EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEecCCc
Confidence            332  23467899999999986666667889999998 4553322 2343 567899999 9888877765444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.46  E-value=1.1e-10  Score=103.51  Aligned_cols=206  Identities=11%  Similarity=0.073  Sum_probs=140.4

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~  145 (326)
                      .++++...+++|.++|..+++.+..+..       .  ..+.++.+.+        ++.++++++.++.|.+||+.... 
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-------g--~~p~~v~~Sp--------DGr~lyv~~~dg~V~viD~~~~t-  229 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-------G--YAVHISRLSA--------SGRYLFVIGRDGKVNMIDLWMKE-  229 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC-------S--SCEEEEEECT--------TSCEEEEEETTSEEEEEETTSSS-
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeC-------C--CCccceEECC--------CCCEEEEEcCCCeEEEEECCCCC-
Confidence            3566777889999999999998877764       1  2344566544        56788889999999999974111 


Q ss_pred             ccccccceEEEEEccCCCceEEEEEc----CCCCEEEEecC-CCeEEEEECCCceeeeeecCCCC--CCCCcCCCCceee
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVD----ISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTS  218 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~  218 (326)
                           ...+....  .......++++    |+|++++++.. ++.|.++|..+.+.+..+.....  +.........+..
T Consensus       230 -----~~~v~~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          230 -----PTTVAEIK--IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             -----CCEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             -----CcEeEEEe--cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence                 01233222  35567899999    69998877665 48999999999888776543211  1000001124667


Q ss_pred             eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc-eeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEE
Q 020454          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~  296 (326)
                      +.+++. ....++.....|.|.++|....+.. +..+ ........+.|+|+|+++++++ .++.|.++|+.+++++..+
T Consensus       303 i~~s~~-~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          303 ILASHY-RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             EEECSS-SSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEcCC-CCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            777764 3446666777899999998764221 2222 2334567889999999987655 6789999999999988766


Q ss_pred             cc
Q 020454          297 IG  298 (326)
Q Consensus       297 ~~  298 (326)
                      ..
T Consensus       381 ~v  382 (567)
T 1qks_A          381 DT  382 (567)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.45  E-value=1.5e-10  Score=96.15  Aligned_cols=152  Identities=11%  Similarity=-0.011  Sum_probs=105.4

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeE
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQV  239 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v  239 (326)
                      -.....++++++++++++...++.|++||..... .+..+..................+++.|. +++++++.+ .++.|
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRI  168 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEE
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeE
Confidence            3468899999999999998889999999986542 33333211100000111235779999873 455777776 69999


Q ss_pred             EEEeCCCCCCceeEEeecC----------CceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEc--ceecceEEE
Q 020454          240 RLYDTSAQRRPVMSFDFRE----------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRS  306 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~----------~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~  306 (326)
                      ++||.. + ..+..+....          .....++++|+ ++++++...++.|++||..+++.+..+.  .+ ...+.+
T Consensus       169 ~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-~~~~~~  245 (329)
T 3fvz_A          169 VQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-GRNVFA  245 (329)
T ss_dssp             EEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-TTCEEE
T ss_pred             EEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-CCCcce
Confidence            999954 4 3455553222          23789999998 6667777788999999999899988874  34 567889


Q ss_pred             EEECCCCCEEEE
Q 020454          307 IARHPTLPIIAS  318 (326)
Q Consensus       307 l~~~p~~~~l~s  318 (326)
                      ++|+| +..+++
T Consensus       246 ~~~~p-g~~~~~  256 (329)
T 3fvz_A          246 ISYIP-GFLFAV  256 (329)
T ss_dssp             EEEET-TEEEEE
T ss_pred             eeecC-CEEEEe
Confidence            99999 434433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.44  E-value=8.4e-10  Score=89.90  Aligned_cols=219  Identities=7%  Similarity=0.041  Sum_probs=141.3

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      +++.++++...++.|.+||.. ++.. .+...      .....+.++...+        ++..+++...++.|..|+.+ 
T Consensus        24 ~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~------~~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           24 DKGKVWITQHKANMISCINLD-GKIT-EYPLP------TPDAKVMCLTISS--------DGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-CCEE-EEECS------STTCCEEEEEECT--------TSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCEEEEecCCCcEEEEcCC-CCeE-EecCC------cccCceeeEEECC--------CCCEEEeCCCCCeEEEECCC-
Confidence            344455555557899999987 5543 22210      1224566676533        33444554557888888753 


Q ss_pred             cccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          143 TKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                               +.+..+... ....+..+.++++++++++...++.|..||. +++........        ....+..+++
T Consensus        87 ---------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~--------~~~~~~~i~~  148 (299)
T 2z2n_A           87 ---------GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN--------KGSYPSFITL  148 (299)
T ss_dssp             ---------SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------TTCCEEEEEE
T ss_pred             ---------CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------CCCCCceEEE
Confidence                     123334432 3457889999999998888777889999998 44433221110        1134678888


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-Ecc
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIG  298 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~~  298 (326)
                      .+  +++++++...++.|..||. ++ + +..+  ......+..++++++|+..++...++.|.+||. +++.... ...
T Consensus       149 ~~--~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  222 (299)
T 2z2n_A          149 GS--DNALWFTENQNNAIGRITE-SG-D-ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPT  222 (299)
T ss_dssp             CT--TSCEEEEETTTTEEEEECT-TC-C-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             cC--CCCEEEEeCCCCEEEEEcC-CC-c-EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCC
Confidence            76  4557777777889999998 44 3 3333  223456889999999987777667889999999 6664432 233


Q ss_pred             eecceEEEEEECCCCCEEEEeccCc
Q 020454          299 KCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       299 ~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      + ...+.++++++++.+.++...++
T Consensus       223 ~-~~~~~~i~~~~~g~l~v~~~~~~  246 (299)
T 2z2n_A          223 P-NARPHAITAGAGIDLWFTEWGAN  246 (299)
T ss_dssp             T-TCCEEEEEECSTTCEEEEETTTT
T ss_pred             C-CCCceeEEECCCCCEEEeccCCc
Confidence            3 46789999999998777654433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.44  E-value=7.6e-11  Score=98.47  Aligned_cols=212  Identities=10%  Similarity=0.030  Sum_probs=128.7

Q ss_pred             eeeCCCCCeEEEEecC---C--cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-
Q 020454           59 IDDSQNDPLLAVARKN---G--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-  132 (326)
Q Consensus        59 ~~~~~~~~~l~~g~~d---g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-  132 (326)
                      ..+++++++|+..+.+   +  .|.+|++.+++.......        + . +..+.+.+        ++..|+.++.+ 
T Consensus        64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--------~-~-~~~~~wsp--------dg~~l~~~~~~~  125 (347)
T 2gop_A           64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--------K-N-IRSLEWNE--------DSRKLLIVGFKR  125 (347)
T ss_dssp             EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--------S-E-EEEEEECT--------TSSEEEEEEECC
T ss_pred             eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--------C-C-ccceeECC--------CCCEEEEEEccC
Confidence            3456677778877654   3  377778877765443332        1 2 66666644        45567666532 


Q ss_pred             --------------------------CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC--
Q 020454          133 --------------------------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--  184 (326)
Q Consensus       133 --------------------------g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--  184 (326)
                                                ..|++|++....        .++.+..  . .+..+.|+|++ +++++..+.  
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--------~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~  193 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--------VIEEFEK--P-RFSSGIWHRDK-IVVNVPHREII  193 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTTE--------EEEEEEE--E-TTCEEEEETTE-EEEEEECCCSS
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--------EEeeecC--C-CcccccCCCCe-EEEEEeccccc
Confidence                                      456666654322        1122222  2 67788999999 777775542  


Q ss_pred             -----eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC--------CeEEEEeCCCCCCce
Q 020454          185 -----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQRRPV  251 (326)
Q Consensus       185 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d--------g~v~iwd~~~~~~~~  251 (326)
                           ...||.+.+++.. .+..+          ..+..  ++|  +++.|+..+.+        ..|.+||  ++ +..
T Consensus       194 ~~~~~~~~l~~~d~~~~~-~l~~~----------~~~~~--~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~  255 (347)
T 2gop_A          194 PQYFKFWDIYIWEDGKEE-KMFEK----------VSFYA--VDS--DGERILLYGKPEKKYMSEHNKLYIYD--GK-EVM  255 (347)
T ss_dssp             CCSSCCEEEEEEETTEEE-EEEEE----------ESEEE--EEE--CSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEE
T ss_pred             ccccccccEEEeCCCceE-EeccC----------cceee--ECC--CCCEEEEEEccccCCccccceEEEEC--CC-ceE
Confidence                 3344443344332 22111          11222  366  66677766643        4788888  33 322


Q ss_pred             eEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          252 MSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       252 ~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .....+...+.. +.|+ ++ ++++++.++.+++| +.+++... +..+ .+.|.+++|+|  .++++++.++..
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~-~~~v~~~~~s~--~~~~~~~~~~~~  323 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKG-RHWIMGFDVDE--IVVYLKETATRL  323 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECS-SSEEEEEEESS--SEEEEEECSSSC
T ss_pred             eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecC-CCeEEeeeeeC--cEEEEEcCCCCh
Confidence            222344567776 8999 88 88899999999999 87666543 4444 77899999999  678887777653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.42  E-value=5.9e-11  Score=100.71  Aligned_cols=179  Identities=9%  Similarity=0.033  Sum_probs=116.7

Q ss_pred             CCceEEEEec-CCc--EEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee
Q 020454          122 RSRTLLTCTT-KGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (326)
Q Consensus       122 ~~~~l~~~~~-~g~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  198 (326)
                      ++..|+..+. +|.  |.+|++....        ...+. ..+...+....|+|+++.|+.++.++.|.+||+.+++...
T Consensus        46 Dg~~l~~~~~~~g~~~l~~~d~~~g~--------~~~lt-~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           46 DGSKLLFGGAFDGPWNYYLLDLNTQV--------ATQLT-EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             TSCEEEEEECTTSSCEEEEEETTTCE--------EEECC-CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCCEEEEEEcCCCCceEEEEeCCCCc--------eEEee-eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence            5667777776 674  5666654322        11111 1122233456799999999999999999999999887654


Q ss_pred             eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE----------------------eCCCeEEEEeCCCCCCceeEEee
Q 020454          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG----------------------TNDHQVRLYDTSAQRRPVMSFDF  256 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~----------------------~~dg~v~iwd~~~~~~~~~~~~~  256 (326)
                      ....+.         .++....|..+.++.+++..                      ..+..|.+||+.++ + ...+..
T Consensus       117 ~~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~  185 (388)
T 3pe7_A          117 VYQVPA---------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQ  185 (388)
T ss_dssp             EEECCT---------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEE
T ss_pred             eeechh---------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-c-eEEeec
Confidence            433321         23434444333466666532                      24578999999976 3 455556


Q ss_pred             cCCceEEEEecC-CCCeEEEEcCC------CcEEEEECCCCeEEEEEcceec-ceEEEEEECCCCCEEEEecc
Q 020454          257 RETPIKAVAEEP-DSFNIYIGNGS------GDLASVDIRTGKLLGCFIGKCS-GSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       257 ~~~~i~~v~~s~-~~~~l~~g~~d------g~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~s~s~  321 (326)
                      +...+..++|+| +|+.|+....+      ..|.++|...++.. .+..+.. ..+..++|+|+++.|+..+.
T Consensus       186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEec
Confidence            667789999999 99988866553      37888888765443 3333312 36888999999998766554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=1.3e-10  Score=95.67  Aligned_cols=222  Identities=10%  Similarity=0.010  Sum_probs=138.2

Q ss_pred             CCCCeEEE-------EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcE
Q 020454           63 QNDPLLAV-------ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (326)
Q Consensus        63 ~~~~~l~~-------g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v  135 (326)
                      .++.++++       +..++.|.+|+..+++.......    ........+.++.+.+        +.+.++.+...+.|
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~~~--------~~g~l~v~~~~~~l   94 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----EVNGYGGIPAGCQCDR--------DANQLFVADMRLGL   94 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----EETTEECCEEEEEECS--------SSSEEEEEETTTEE
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----ccCCCCCCCceEEEec--------CCCcEEEEECCCCE
Confidence            44445555       47789999999877776322110    0001124566676533        21566666666678


Q ss_pred             EEEEccccccccccccceEEEE--Ec---cCCCceEEEEEcCCCCEEEEecCC---------------CeEEEEECCCce
Q 020454          136 SMRSIEVTKVSAESSCSTVKSW--NV---CASGTIAFSKVDISEKFSLFGGKG---------------VEVNVWDLDKCE  195 (326)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~--~~---~~~~~v~~~~~~~~~~~l~sg~~d---------------~~i~iwd~~~~~  195 (326)
                      .+|+.+ ..         +..+  ..   .....+..+++++++++.++...+               +.|..||.. ++
T Consensus        95 ~~~d~~-g~---------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~  163 (314)
T 1pjx_A           95 LVVQTD-GT---------FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEEETT-SC---------EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred             EEEeCC-CC---------EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence            888865 22         1111  10   112347899999999888776554               567777765 43


Q ss_pred             eeeeecCCCCCCCCcCCCCceeeeEEe----ecCCCcE-EEEEeCCCeEEEEeCC-CCCC----ceeEEeecC-CceEEE
Q 020454          196 KIWTAKPPPKNSLGIFTPTWFTSAAFL----SIDDHRK-FVAGTNDHQVRLYDTS-AQRR----PVMSFDFRE-TPIKAV  264 (326)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~~-l~~~~~dg~v~iwd~~-~~~~----~~~~~~~~~-~~i~~v  264 (326)
                      .......          ......++++    |  +++. +++...++.|.+||+. .+..    ....+..+. .....+
T Consensus       164 ~~~~~~~----------~~~~~~i~~~~~~d~--dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          164 MIQVDTA----------FQFPNGIAVRHMNDG--RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEEEE----------ESSEEEEEEEECTTS--CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             EEEeccC----------CCCcceEEEecccCC--CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            3222111          0235677888    6  4534 4555678999999976 2210    111222222 557889


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       265 ~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      +++++|+++++...++.|.+||..+++.+..+..+ ...+.+++|+|+++.|+.++
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEe
Confidence            99999988887778889999999878777777665 67899999999998555443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.41  E-value=4.2e-09  Score=85.76  Aligned_cols=248  Identities=8%  Similarity=0.043  Sum_probs=150.2

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP  101 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  101 (326)
                      .++.|.+|+.. +     ++. .+..+........+..+  .++.+.++...++.|..||.. ++.. .+...      .
T Consensus        39 ~~~~v~~~~~~-~-----~~~-~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~------~  101 (300)
T 2qc5_A           39 KANKISSLDQS-G-----RIK-EFEVPTPDAKVMCLIVS--SLGDIWFTENGANKIGKLSKK-GGFT-EYPLP------Q  101 (300)
T ss_dssp             TTTEEEEECTT-S-----CEE-EEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEE-EEECS------S
T ss_pred             CCCeEEEECCC-C-----ceE-EEECCCCCCcceeEEEC--CCCCEEEEecCCCeEEEECCC-CCeE-EecCC------C
Confidence            45667777765 3     221 12222222333444443  445555555557889999986 6653 23210      1


Q ss_pred             CCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEe
Q 020454          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       102 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg  180 (326)
                      ....+.++...+        ++..+++...++.|..++.+          +.+..+... ....+..+.+++++++.++.
T Consensus       102 ~~~~~~~i~~~~--------~g~l~v~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  163 (300)
T 2qc5_A          102 PDSGPYGITEGL--------NGDIWFTQLNGDRIGKLTAD----------GTIYEYDLPNKGSYPAFITLGSDNALWFTE  163 (300)
T ss_dssp             TTCCEEEEEECS--------TTCEEEEETTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCCCccceECC--------CCCEEEEccCCCeEEEECCC----------CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence            224566676533        33445555557788877754          123333332 34568899999999977776


Q ss_pred             cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE--eecC
Q 020454          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRE  258 (326)
Q Consensus       181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~  258 (326)
                      ..++.|..||. +++.... ....       ....+.++++.+  +++++++....+.|.+||.. + . ...+  ....
T Consensus       164 ~~~~~i~~~~~-~g~~~~~-~~~~-------~~~~~~~i~~d~--~g~l~v~~~~~~~i~~~~~~-g-~-~~~~~~~~~~  229 (300)
T 2qc5_A          164 NQNNSIGRITN-TGKLEEY-PLPT-------NAAAPVGITSGN--DGALWFVEIMGNKIGRITTT-G-E-ISEYDIPTPN  229 (300)
T ss_dssp             TTTTEEEEECT-TCCEEEE-ECSS-------TTCCEEEEEECT--TSSEEEEETTTTEEEEECTT-C-C-EEEEECSSTT
T ss_pred             cCCCeEEEECC-CCcEEEe-eCCC-------CCCCcceEEECC--CCCEEEEccCCCEEEEEcCC-C-c-EEEEECCCCC
Confidence            66789999998 4443321 1100       113467888876  55566666667889999983 3 2 2233  2234


Q ss_pred             CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE-EEcceecceEEEEEECCCCCEEEEec
Q 020454          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       259 ~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ..+..++++++|+..++...++.|..||. +++... .+... ...+.++++++++.+.++..
T Consensus       230 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          230 ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS
T ss_pred             CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc
Confidence            56889999999986666666789999998 454432 23323 45688999999998766654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.39  E-value=5.4e-10  Score=91.32  Aligned_cols=214  Identities=11%  Similarity=0.007  Sum_probs=135.4

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +.++++...++.|..||..+++. ..+..         ...+.++.+.+        ++ .++++. ++.|.+|+.+...
T Consensus        25 ~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---------~~~~~~i~~~~--------dG-~l~v~~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A           25 NSLLFVDIPAKKVCRWDSFTKQV-QRVTM---------DAPVSSVALRQ--------SG-GYVATI-GTKFCALNWKEQS   84 (297)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCE-EEEEC---------SSCEEEEEEBT--------TS-SEEEEE-TTEEEEEETTTTE
T ss_pred             CEEEEEECCCCEEEEEECCCCcE-EEEeC---------CCceEEEEECC--------CC-CEEEEE-CCeEEEEECCCCc
Confidence            44677777889999999977665 22221         14567777543        33 355555 5678888865322


Q ss_pred             cccccccceEEE-EEcc---CCCceEEEEEcCCCCEEEEecC---------CCeEEEEECCC-ceeeeeecCCCCCCCCc
Q 020454          145 VSAESSCSTVKS-WNVC---ASGTIAFSKVDISEKFSLFGGK---------GVEVNVWDLDK-CEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       145 ~~~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~l~sg~~---------d~~i~iwd~~~-~~~~~~~~~~~~~~~~~  210 (326)
                               ++. ....   ....+..+.++|+|++.++...         ...-.+|.+.. ++.......        
T Consensus        85 ---------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--------  147 (297)
T 3g4e_A           85 ---------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--------  147 (297)
T ss_dssp             ---------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--------
T ss_pred             ---------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--------
Confidence                     222 2211   1234788999999997665422         12234444432 222111111        


Q ss_pred             CCCCceeeeEEeecCCCc-EEEEEeCCCeEEEEeCC--CCCCc-----eeEEeecCCceEEEEecCCCCeEEEEcCCCcE
Q 020454          211 FTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTS--AQRRP-----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iwd~~--~~~~~-----~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v  282 (326)
                        ......++|+|  +++ ++++.+.++.|.+||+.  ++ ..     +..+.........++++++|++.++....+.|
T Consensus       148 --~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          148 --VDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             --ESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred             --cccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence              12356889988  444 44666778999999873  33 21     11222233567889999999877777777889


Q ss_pred             EEEECCCCeEEEEEcceecceEEEEEEC-CCCCEEEEecc
Q 020454          283 ASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCGF  321 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~s~  321 (326)
                      ..||..+++.+..+..+ ...+++++|. |+++.|+.++.
T Consensus       223 ~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          223 IRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence            99999999999888876 6789999998 88776554443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.38  E-value=2e-09  Score=91.06  Aligned_cols=263  Identities=10%  Similarity=0.053  Sum_probs=148.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-------CceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-------SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~   87 (326)
                      -++.+++.+|.|..+|..++     +..-++.....       ...+. .....  .+..+++++.++.|..+|..+++.
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDG-----KEIWSVSLAEKDGWFSKEPALLS-GGVTV--SGGHVYIGSEKAQVYALNTSDGTV  125 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTC-----CEEEEEECCC---CCSCCCCCEE-EEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred             CEEEEEcCCCeEEEEEccCC-----ceeeeecCccccccccccCcccc-cCceE--eCCEEEEEcCCCEEEEEECCCCCE
Confidence            56888888999999999877     34222221111       11111 11111  233688899999999999999988


Q ss_pred             eeeecccCCCCCCCCCCCeee-eecccccccccCCCCceEEEEecCCcEEEEEcccccc---------------------
Q 020454           88 RVAISNAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------------  145 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------------------  145 (326)
                      +......         ..+.. ...          .++.+++++.++.+..+|......                     
T Consensus       126 ~W~~~~~---------~~~~~~p~~----------~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~  186 (376)
T 3q7m_A          126 AWQTKVA---------GEALSRPVV----------SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT  186 (376)
T ss_dssp             EEEEECS---------SCCCSCCEE----------ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred             EEEEeCC---------CceEcCCEE----------ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence            7665531         11111 111          235677777777777777543221                     


Q ss_pred             -----ccccccceEEEEEccCCCceEEEEE-----------------cC--CCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          146 -----SAESSCSTVKSWNVCASGTIAFSKV-----------------DI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       146 -----~~~~~~~~~~~~~~~~~~~v~~~~~-----------------~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                           ..+..++.+..++......+.....                 .|  .+..++.++.++.+..+|.++++.++...
T Consensus       187 ~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~  266 (376)
T 3q7m_A          187 AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE  266 (376)
T ss_dssp             ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence                 0011223333444333222222211                 11  13445555666677777776666665543


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-cCCceEEEEecCCCCeEEEEcCCC
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSG  280 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg  280 (326)
                      ..           ....+..    ++..++.++.++.+..+|..++ +.+..... ....+.....  .+..|++++.+|
T Consensus       267 ~~-----------~~~~~~~----~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g  328 (376)
T 3q7m_A          267 LG-----------SVNDFIV----DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG  328 (376)
T ss_dssp             CC-----------CEEEEEE----ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCCCEE--ETTEEEEECTTS
T ss_pred             CC-----------CCCCceE----ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccCCEE--ECCEEEEEeCCC
Confidence            21           1122222    2337778888999999999887 44555441 2222222233  356899999999


Q ss_pred             cEEEEECCCCeEEEEEcceecceEEE-EEECCCCCEEEEeccCccC
Q 020454          281 DLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       281 ~v~iwd~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~~  325 (326)
                      .++++|.++++.+.++... ...+.+ ...  .+..|+.++.||.+
T Consensus       329 ~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~~~G~l  371 (376)
T 3q7m_A          329 YLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQAKDGTV  371 (376)
T ss_dssp             EEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEBTTSCE
T ss_pred             eEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEeCCCEE
Confidence            9999999999998877653 333332 222  24467777777753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.37  E-value=3.1e-11  Score=102.57  Aligned_cols=219  Identities=10%  Similarity=0.007  Sum_probs=130.5

Q ss_pred             eCCCCCeEEEEecC---CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454           61 DSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        61 ~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      .++++++|+.....   ..|.+||+.+++......        ..........+.+        ++..|+..+.++.+++
T Consensus        43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~~~sp--------dg~~l~~~~~~~~l~~  106 (396)
T 3c5m_A           43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--------GKGDNTFGGFIST--------DERAFFYVKNELNLMK  106 (396)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--------SSCBCTTTCEECT--------TSSEEEEEETTTEEEE
T ss_pred             CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--------CCCCccccceECC--------CCCEEEEEEcCCcEEE
Confidence            45566677766543   368888987776533221        1111111133333        5667888888889999


Q ss_pred             EEccccccccccccceEEEEEccCCCceEE-------------------EEEcCCCCEEEEe-----cCCCeEEEEECCC
Q 020454          138 RSIEVTKVSAESSCSTVKSWNVCASGTIAF-------------------SKVDISEKFSLFG-----GKGVEVNVWDLDK  193 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~sg-----~~d~~i~iwd~~~  193 (326)
                      |++.....        ..+..... .....                   ..++|+++.++..     ..+..|.+||+.+
T Consensus       107 ~d~~~~~~--------~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~  177 (396)
T 3c5m_A          107 VDLETLEE--------QVIYTVDE-EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET  177 (396)
T ss_dssp             EETTTCCE--------EEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred             EECCCCCc--------EEEEeccc-ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence            99764331        11222111 11111                   3467777776654     4567899999988


Q ss_pred             ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC------CeEEEEeCCCCCCceeEEeec--CCceEEEE
Q 020454          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFR--ETPIKAVA  265 (326)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~--~~~i~~v~  265 (326)
                      ++......          ....+..+.|+|. ++..|+..+.+      ..|.+||+... . ...+..+  ...+..++
T Consensus       178 g~~~~~~~----------~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          178 GELEVIHQ----------DTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CCEEEEEE----------ESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEE
T ss_pred             CcEEeecc----------CCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCccccceE
Confidence            76544321          1234778899983 23456555443      46888898754 2 2333222  23578889


Q ss_pred             ecCCCCeEEEEcCC-----CcEEEEECCCCeEEEEEcceecceEEEEEECC-CCCEEEEecc
Q 020454          266 EEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGF  321 (326)
Q Consensus       266 ~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~  321 (326)
                      |+|+|++|+..+.+     +.|++||+.+++.......  . ... +.|+| ++++|+.++.
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEEEEEEC
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceEEEecC
Confidence            99999988766543     4499999998875443221  1 122 88999 9998887653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.37  E-value=5.5e-13  Score=112.53  Aligned_cols=203  Identities=15%  Similarity=0.168  Sum_probs=112.0

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +..+++++.||.|..||..+|+.+..+..          +.+.+.....        ++..+++++.||.++.||....+
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------~~~~s~p~~~--------~g~~~v~~s~dg~l~a~d~~tG~   70 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------DPVLQVPTHV--------EEPAFLPDPNDGSLYTLGSKNNE   70 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC----------CCSCCCC-------------CCEEECTTTCCEEEC-----C
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC----------CCceecceEc--------CCCEEEEeCCCCEEEEEECCCCc
Confidence            45799999999999999999998777653          2222222222        33466667899999999975432


Q ss_pred             cccccccceEEEEEccCCCceEE-EEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          145 VSAESSCSTVKSWNVCASGTIAF-SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                              .+..|.......+.+ ..+. .+..+++|+.|+.|..||.++++.++....+.             ...++|
T Consensus        71 --------~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------------~~~~~p  128 (369)
T 2hz6_A           71 --------GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------------ADSLSP  128 (369)
T ss_dssp             --------CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------
T ss_pred             --------eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------------cccccc
Confidence                    122222111101100 0011 34567788889999999999999988765432             123345


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC---CeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~---~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~  300 (326)
                        ++..+++++.|+.|+.||.+++ +.+..+....  ....+++++.   ..+++++.+|.|+.||.++|+.+.++..  
T Consensus       129 --~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--  201 (369)
T 2hz6_A          129 --STSLLYLGRTEYTITMYDTKTR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY--  201 (369)
T ss_dssp             ------EEEEEEEEEEECCCSSSS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--
T ss_pred             --cCCEEEEEecCCEEEEEECCCC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC--
Confidence              3448888899999999999987 4455554321  1223344432   5678889999999999999999887763  


Q ss_pred             cceEEE-EEECCCCC
Q 020454          301 SGSIRS-IARHPTLP  314 (326)
Q Consensus       301 ~~~v~~-l~~~p~~~  314 (326)
                      ..++.. ..+++++.
T Consensus       202 ~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          202 ASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSCEEEEEECTTSSC
T ss_pred             CCceEEEEEecCCce
Confidence            445543 45556664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.36  E-value=3.3e-10  Score=91.06  Aligned_cols=223  Identities=9%  Similarity=-0.040  Sum_probs=133.2

Q ss_pred             cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC
Q 020454           21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ  100 (326)
Q Consensus        21 ~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  100 (326)
                      ..++.|.+|+..+.     ... .+... .......+.++  +++.++++.. ++.|.+||...+.. ..+..       
T Consensus        43 ~~~~~i~~~~~~~~-----~~~-~~~~~-~~~~p~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~-------  104 (270)
T 1rwi_B           43 GMYGRVVKLATGST-----GTT-VLPFN-GLYQPQGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPF-------  104 (270)
T ss_dssp             SSSCEEEEECC----------E-ECCCC-SCCSCCCEEEC--TTCCEEEEET-TTEEEEECTTCSCC-EECCC-------
T ss_pred             CCCCcEEEecCCCc-----ccc-eEeeC-CcCCcceeEEC--CCCCEEEEcC-CCEEEEEeCCCceE-eeeec-------
Confidence            56778888886543     111 11111 11111223333  3444444444 89999999865443 22221       


Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  180 (326)
                      .....+.++.+.+        ++..+++...++.|.+|+.....         ...........+..++++++++++++.
T Consensus       105 ~~~~~p~~i~~~~--------~g~l~v~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~  167 (270)
T 1rwi_B          105 DGLNYPEGLAVDT--------QGAVYVADRGNNRVVKLAAGSKT---------QTVLPFTGLNDPDGVAVDNSGNVYVTD  167 (270)
T ss_dssp             CSCSSEEEEEECT--------TCCEEEEEGGGTEEEEECTTCCS---------CEECCCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CCcCCCcceEECC--------CCCEEEEECCCCEEEEEECCCce---------eEeeccccCCCceeEEEeCCCCEEEEE
Confidence            1123566677543        34455555667888888533211         011111122357789999999988777


Q ss_pred             cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCC
Q 020454          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRET  259 (326)
Q Consensus       181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~  259 (326)
                      ..++.|.+||............         ....+.++++.+  ++.++++...++.|.+||.... . ..... .+..
T Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~~~-~-~~~~~~~~~~  234 (270)
T 1rwi_B          168 TDNNRVVKLEAESNNQVVLPFT---------DITAPWGIAVDE--AGTVYVTEHNTNQVVKLLAGST-T-STVLPFTGLN  234 (270)
T ss_dssp             GGGTEEEEECTTTCCEEECCCS---------SCCSEEEEEECT--TCCEEEEETTTSCEEEECTTCS-C-CEECCCCSCS
T ss_pred             CCCCEEEEEecCCCceEeeccc---------CCCCceEEEECC--CCCEEEEECCCCcEEEEcCCCC-c-ceeeccCCCC
Confidence            7788999999876554332111         113467888887  4557777777899999998754 2 22222 2235


Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                      .+..++++++|+.+++...++.|++|++...+
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            68999999999988888889999999987654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=3.1e-09  Score=88.81  Aligned_cols=269  Identities=13%  Similarity=0.038  Sum_probs=159.9

Q ss_pred             eeeeeecC-----cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEE
Q 020454           15 LRALTFDS-----LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI   79 (326)
Q Consensus        15 ~~l~~~~~-----~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i   79 (326)
                      -++.+.+.     ++.|.|.|..+.     ++..++.-...+ . ++    -++++++++++.          .++.|.+
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~-----~v~~~I~vG~~P-~-va----~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAG-----RVIGMIDGGFLP-N-PV----VADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTT-----EEEEEEEECSSC-E-EE----ECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCC-----eEEEEEECCCCC-c-EE----ECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            45666655     579999999877     565555433333 2 22    244566677765          3688999


Q ss_pred             EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccccccceEEEE
Q 020454           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSW  157 (326)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~~~~~~~~~~  157 (326)
                      ||..+.+.+..+..-.....+.+ .....+.+.+        ++.+++++..  ++.|.++|+....        .+..+
T Consensus       114 iD~~t~~v~~~I~v~~g~r~~~g-~~P~~~a~sp--------DGk~lyVan~~~~~~VsVID~~t~~--------vv~tI  176 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRFLVG-TYPWMTSLTP--------DGKTLLFYQFSPAPAVGVVDLEGKA--------FKRML  176 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBS-CCGGGEEECT--------TSSEEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred             EECCCCeEEEEEECCCccccccC-CCCceEEEcC--------CCCEEEEEEcCCCCeEEEEECCCCc--------EEEEE
Confidence            99999998887764100000001 1233355444        5667777763  6899999987654        34444


Q ss_pred             EccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCC-ceeeeeecCCCCCCCCcCCCCce-eeeEEeecCCCcEEEEEe
Q 020454          158 NVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWF-TSAAFLSIDDHRKFVAGT  234 (326)
Q Consensus       158 ~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~~l~~~~  234 (326)
                      .+.  +.   ..+.|. .+.+++.+.||.+.+.++.+ ++......... .   .. ...+ ....|.+. ++++ +..+
T Consensus       177 ~v~--g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~-~---~~-~~~~~~~~~~~~~-dG~~-~~vs  244 (386)
T 3sjl_D          177 DVP--DC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-H---PE-DEFLINHPAYSQK-AGRL-VWPT  244 (386)
T ss_dssp             ECC--SE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC-S---CT-TSCBCSCCEEETT-TTEE-EEEB
T ss_pred             ECC--Cc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeeccee-c---cc-cccccccceeEcC-CCcE-EEEe
Confidence            432  11   112233 35666777888888888876 45432211110 0   00 0111 12355532 5644 4466


Q ss_pred             CCCeEEEEeCCCCCC-ceeEEe----------ecCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCeEE
Q 020454          235 NDHQVRLYDTSAQRR-PVMSFD----------FRETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLL  293 (326)
Q Consensus       235 ~dg~v~iwd~~~~~~-~~~~~~----------~~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~~~  293 (326)
                      .+|+|++.|+..... .+..+.          ........++++++++.+++...          .+.|.++|+++++.+
T Consensus       245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~  324 (386)
T 3sjl_D          245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL  324 (386)
T ss_dssp             TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence            689999999975421 122222          01123345778999998887643          257999999999999


Q ss_pred             EEEcceecceEEEEEECCCCC-EEEE-eccCccC
Q 020454          294 GCFIGKCSGSIRSIARHPTLP-IIAS-CGFLEAA  325 (326)
Q Consensus       294 ~~~~~~~~~~v~~l~~~p~~~-~l~s-~s~D~~~  325 (326)
                      .++..  ..++++|+++|+++ +|++ ...++.+
T Consensus       325 ~~i~v--g~~~~~lavs~D~~~~ly~tn~~~~~V  356 (386)
T 3sjl_D          325 AKFEM--GHEIDSINVSQDEKPLLYALSTGDKTL  356 (386)
T ss_dssp             EEEEE--EEEECEEEECSSSSCEEEEEETTTTEE
T ss_pred             EEEEC--CCCcceEEECCCCCeEEEEEcCCCCeE
Confidence            99884  45899999999986 5555 4445543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.35  E-value=4.9e-10  Score=93.05  Aligned_cols=217  Identities=10%  Similarity=-0.025  Sum_probs=134.0

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~  147 (326)
                      ++....++.++.|.   ++....+.        .+...+.++.+.+        ++..+++...++.|.+|+.+...   
T Consensus        20 ~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~--------~g~l~~~~~~~~~i~~~d~~~~~---   77 (333)
T 2dg1_A           20 AVPIISESELQTIT---AEPWLEIS--------KKGLQLEGLNFDR--------QGQLFLLDVFEGNIFKINPETKE---   77 (333)
T ss_dssp             SSCCCCGGGSCEEE---CEEEEEEE--------SSCCCEEEEEECT--------TSCEEEEETTTCEEEEECTTTCC---
T ss_pred             eeEEeecccCcccc---cceeEEEe--------ccCccccCcEECC--------CCCEEEEECCCCEEEEEeCCCCc---
Confidence            33346678888882   22222222        1223456666533        34455567788999999865322   


Q ss_pred             ccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                            ++.+.......+.+++++++++++++...+    +.|.+||..+++....+....       ....+..+.+.|
T Consensus        78 ------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~i~~d~  144 (333)
T 2dg1_A           78 ------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-------TAYCIDDMVFDS  144 (333)
T ss_dssp             ------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-------SCCCEEEEEECT
T ss_pred             ------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc-------cCCcccceEECC
Confidence                  222222335679999999999988877666    689999988766542222111       123578889987


Q ss_pred             cCCCcEEEEEeC------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC-CeEEEE
Q 020454          224 IDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT-GKLLGC  295 (326)
Q Consensus       224 ~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~-~~~~~~  295 (326)
                        +++++++...      .+.|..+|.... + +..+......+..++|+|++++|+ +.+.++.|.+||+.+ ++.+..
T Consensus       145 --~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~  220 (333)
T 2dg1_A          145 --KGGFYFTDFRGYSTNPLGGVYYVSPDFR-T-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP  220 (333)
T ss_dssp             --TSCEEEEECCCBTTBCCEEEEEECTTSC-C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred             --CCCEEEEeccccccCCCceEEEEeCCCC-E-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence              4556665543      356777776643 2 333333334578899999998665 555678999999964 332221


Q ss_pred             E-----cce-ecceEEEEEECCCCCEEEEeccCc
Q 020454          296 F-----IGK-CSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       296 ~-----~~~-~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      +     ... ....+..+++++++.+.++...++
T Consensus       221 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~  254 (333)
T 2dg1_A          221 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG  254 (333)
T ss_dssp             EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred             ccceEEEecCCCCCCCceEECCCCCEEEEEcCCC
Confidence            1     100 013678899999998877765554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.34  E-value=8.2e-10  Score=100.37  Aligned_cols=275  Identities=11%  Similarity=0.049  Sum_probs=168.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc---------eEEEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN---------CVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~   85 (326)
                      -++.+++.+|.|..+|..++     +..-++.......         .......    .+..+++++.|+.|..+|..+|
T Consensus        78 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG  148 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTG-----NRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATG  148 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTT-----EEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEECCCCeEEEEECCCC-----cEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCC
Confidence            45777888899999998877     4432322211100         0001111    1346899999999999999999


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEEEc
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      +.+..+......   .....+...-..         .++.+++++.      +|.|+.+|....+.          +|..
T Consensus       149 ~~~W~~~~~~~~---~~~~~~~~~p~v---------~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~----------~W~~  206 (677)
T 1kb0_A          149 KEVWHQNTFEGQ---KGSLTITGAPRV---------FKGKVIIGNGGAEYGVRGYITAYDAETGER----------KWRW  206 (677)
T ss_dssp             CEEEEEETTTTC---CSSCBCCSCCEE---------ETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEE
T ss_pred             CEEeeecCCcCc---CcCcccccCcEE---------ECCEEEEEecccccCCCCEEEEEECCCCcE----------EEEe
Confidence            988776642000   000111110000         2346666654      67888888654331          2221


Q ss_pred             cC---------------------------------CCceEEEEEcCCCCEEEEecCCC-------------------eEE
Q 020454          160 CA---------------------------------SGTIAFSKVDISEKFSLFGGKGV-------------------EVN  187 (326)
Q Consensus       160 ~~---------------------------------~~~v~~~~~~~~~~~l~sg~~d~-------------------~i~  187 (326)
                      ..                                 ......++++|++++++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            11                                 11123577888888888877664                   599


Q ss_pred             EEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecCC-----
Q 020454          188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-----  259 (326)
Q Consensus       188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----  259 (326)
                      .+|.++++.++..+....+.+.........-+....  ++   ..++.++.+|.++++|..++ +.+..+.....     
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~--dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI--AGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASG  363 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEE
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEeccc--CCcEeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccc
Confidence            999999999998776544333222112111112222  34   57899999999999999988 55555542210     


Q ss_pred             ------ce------------------------EEEEecCCCCeEEEEcC-------------------------------
Q 020454          260 ------PI------------------------KAVAEEPDSFNIYIGNG-------------------------------  278 (326)
Q Consensus       260 ------~i------------------------~~v~~s~~~~~l~~g~~-------------------------------  278 (326)
                            ++                        ..++++|+..++++...                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                  11                        14688898888887543                               


Q ss_pred             ------------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          279 ------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       279 ------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                                  .|.|..||+.+++.+.+++.  ..++.+..+..++.+++.++.||.+
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l  500 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRL  500 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcE
Confidence                        27899999999999888762  4455566666777788888888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.34  E-value=3.7e-09  Score=89.05  Aligned_cols=219  Identities=11%  Similarity=-0.048  Sum_probs=130.5

Q ss_pred             cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe----------cCCcEEEEEcccccc
Q 020454           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----------TKGKASMRSIEVTKV  145 (326)
Q Consensus        76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~----------~~g~v~i~~~~~~~~  145 (326)
                      +|.+||..+++.+..+..        +..+  ++.+.+        ++..++++.          .++.|.++|..... 
T Consensus        48 ~v~v~D~~t~~~~~~i~~--------g~~p--~i~~sp--------Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~-  108 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNG--------GFLP--NPVAAH--------SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL-  108 (373)
T ss_pred             EEEEEECCCCeEEEEecC--------CCCC--CeEECC--------CCCEEEEEeccccccccCCCCCeEEEEECCCCc-
Confidence            889999998888766553        2233  566544        556777765          36789999976433 


Q ss_pred             ccccccceEEEEEcc------CCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeee-ecCCCCCCC--------
Q 020454          146 SAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT-AKPPPKNSL--------  208 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~--------  208 (326)
                             .+..+.+.      .......+.++|++++|+++..  ++.|.++| .+++.+.. +........        
T Consensus       109 -------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~  180 (373)
T 2mad_H          109 -------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTF  180 (373)
T ss_pred             -------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceE
Confidence                   22222221      0123457899999999988764  57899999 98887665 432110000        


Q ss_pred             -CcC----------CCCce----------------eeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEee----
Q 020454          209 -GIF----------TPTWF----------------TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF----  256 (326)
Q Consensus       209 -~~~----------~~~~v----------------~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~----  256 (326)
                       ...          ....+                ....+.+. ++ .++..+..+.+.+.|+..... .+..+..    
T Consensus       181 ~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~-~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEec-CC-EEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence             000          00000                00112221 12 222223556777777654311 1112211    


Q ss_pred             ------cCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC-EEEEe
Q 020454          257 ------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASC  319 (326)
Q Consensus       257 ------~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~  319 (326)
                            .......++++|+++.++++..          ++.|.++|..+++.+.++..  .....+++|+|+++ +++++
T Consensus       259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEE
Confidence                  1122344788999998887653          35799999999999999874  44689999999999 77777


Q ss_pred             cc-CccC
Q 020454          320 GF-LEAA  325 (326)
Q Consensus       320 s~-D~~~  325 (326)
                      .. ++.+
T Consensus       337 ~~~~~~V  343 (373)
T 2mad_H          337 SAGTEVL  343 (373)
T ss_pred             cCCCCeE
Confidence            63 5543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.34  E-value=5.4e-10  Score=93.30  Aligned_cols=195  Identities=13%  Similarity=0.060  Sum_probs=121.2

Q ss_pred             CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---Cc--EEEEEccccccccc
Q 020454           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GK--ASMRSIEVTKVSAE  148 (326)
Q Consensus        74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~--v~i~~~~~~~~~~~  148 (326)
                      ++.|.+||+.+++.. .+            ..+....+.+        ++..|+..+.+   +.  |.+|++....    
T Consensus        42 ~~~l~~~d~~~~~~~-~l------------~~~~~~~~Sp--------Dg~~la~~~~~~~~~~~~l~~~~~~~g~----   96 (347)
T 2gop_A           42 ENTIVIENLKNNARR-FI------------ENATMPRISP--------DGKKIAFMRANEEKKVSEIWVADLETLS----   96 (347)
T ss_dssp             EEEEEEEETTTCCEE-EE------------ESCEEEEECT--------TSSEEEEEEEETTTTEEEEEEEETTTTE----
T ss_pred             cceEEEEeCCCCceE-Ec------------ccCCCeEECC--------CCCEEEEEEeccCCCcceEEEEECCCCc----
Confidence            577999999776642 22            1344455544        55667766543   34  5555544321    


Q ss_pred             cccceEEEEEccCCCceEEEEEcCCCCEEEEecCC---------------------------CeEEEEECCCceeeeeec
Q 020454          149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---------------------------VEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---------------------------~~i~iwd~~~~~~~~~~~  201 (326)
                          ...+...  .. +..+.|+|+++.|+.++.+                           ..|.+||+.+++.+..+.
T Consensus        97 ----~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~  169 (347)
T 2gop_A           97 ----SKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE  169 (347)
T ss_dssp             ----EEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred             ----eEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence                2233332  22 8899999999988877632                           569999998877633332


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-------eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY  274 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~  274 (326)
                      . .          .+..+.|+|  ++ +++++..++       ...||.+.++ + ...+..+ ..+..+  +|+|++|+
T Consensus       170 ~-~----------~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~-~~~l~~~-~~~~~~--spdg~~l~  230 (347)
T 2gop_A          170 K-P----------RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWEDG-K-EEKMFEK-VSFYAV--DSDGERIL  230 (347)
T ss_dssp             E-E----------TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEETT-E-EEEEEEE-ESEEEE--EECSSCEE
T ss_pred             C-C----------CcccccCCC--Ce-EEEEEecccccccccccccEEEeCCC-c-eEEeccC-cceeeE--CCCCCEEE
Confidence            2 1          255778987  56 777775542       3344433333 2 3444444 445544  99999988


Q ss_pred             EEcCC--------CcEEEEECCCCeEEEEEcceecceEEE-EEECCCCCEEEEeccCcc
Q 020454          275 IGNGS--------GDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGFLEA  324 (326)
Q Consensus       275 ~g~~d--------g~v~iwd~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~s~D~~  324 (326)
                      .++.+        ..|.+||  +++.......+ ...+.. +.|+ ++ ++++++.|+.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             EEEccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecCCc
Confidence            66644        3688888  56554444555 778886 9999 88 8888888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=1.4e-08  Score=82.67  Aligned_cols=218  Identities=8%  Similarity=0.024  Sum_probs=139.9

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      .++.+.++...++.|.+|+.. +++.. +...      .....+.++...+        ++..+++...++.|..++.. 
T Consensus        29 ~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------~~~~~~~~i~~~~--------~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           29 EDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------TPDAKVMCLIVSS--------LGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEE-EECS------STTCCEEEEEECT--------TSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCEEEEcCCCCeEEEECCC-CceEE-EECC------CCCCcceeEEECC--------CCCEEEEecCCCeEEEECCC-
Confidence            345555555578999999986 66533 2210      1224566666533        33444444457788888754 


Q ss_pred             cccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee-eecCCCCCCCCcCCCCceeeeE
Q 020454          143 TKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      .         .+..+... ....+..++++++++++++...++.|..||.. ++... ....         ....+.+++
T Consensus        92 g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---------~~~~~~~i~  152 (300)
T 2qc5_A           92 G---------GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN---------KGSYPAFIT  152 (300)
T ss_dssp             S---------CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS---------TTCCEEEEE
T ss_pred             C---------CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC---------CCCCceeEE
Confidence            1         22333332 23568899999999988887778899999987 44432 2111         113467888


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEE-Ec
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FI  297 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~  297 (326)
                      +.+  +++++++...++.|..||. .+ . ...+.  .....+..++++++|+..++....+.|.+||. +++.... +.
T Consensus       153 ~d~--~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  226 (300)
T 2qc5_A          153 LGS--DNALWFTENQNNSIGRITN-TG-K-LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP  226 (300)
T ss_dssp             ECT--TSSEEEEETTTTEEEEECT-TC-C-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             ECC--CCCEEEEecCCCeEEEECC-CC-c-EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC
Confidence            876  4556666666889999998 34 2 22333  23456889999999977777667778999998 5554432 33


Q ss_pred             ceecceEEEEEECCCCCEEEEeccCc
Q 020454          298 GKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .+ ...+.+|++++++.+.++...++
T Consensus       227 ~~-~~~~~~i~~d~~g~l~v~~~~~~  251 (300)
T 2qc5_A          227 TP-NARPHAITAGKNSEIWFTEWGAN  251 (300)
T ss_dssp             ST-TCCEEEEEECSTTCEEEEETTTT
T ss_pred             CC-CCCceEEEECCCCCEEEeccCCC
Confidence            33 55788999999998776664433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.33  E-value=1.4e-09  Score=99.65  Aligned_cols=225  Identities=8%  Similarity=-0.086  Sum_probs=136.5

Q ss_pred             EEeeeCCCCCeEEEE-----ecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           57 ASIDDSQNDPLLAVA-----RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        57 ~~~~~~~~~~~l~~g-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      .+..+++++++|+.+     +.+.+|++||+.+++.+.....       . .....++.+.+        ++..|+.++.
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------~-~~~~~~~~wsp--------Dg~~l~~~~~  187 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-------E-GGKYATPKWTP--------DSKGFYYEWL  187 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-------S-CCTTCCCEECT--------TSSEEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-------C-cccccceEEec--------CCCEEEEEEe
Confidence            344456777788844     3345899999998886411111       0 01113455544        5567888877


Q ss_pred             CCc-------------EEEEEccccccccccccceEEEEEcc-CCCceEEEEEcCCCCEEEEecCCC----eEEEEECCC
Q 020454          132 KGK-------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGV----EVNVWDLDK  193 (326)
Q Consensus       132 ~g~-------------v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~----~i~iwd~~~  193 (326)
                      +..             |++|++.....      ....++... +...+..+.++|+|++|+.++.++    .|.+||..+
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~  261 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPS------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE  261 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGG------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCch------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence            665             88998764321      112333332 224688999999999888777665    677776654


Q ss_pred             ceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe---CCCeEEEEeCCCCCC-ceeEEeec--CCceEEEEec
Q 020454          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR-PVMSFDFR--ETPIKAVAEE  267 (326)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~---~dg~v~iwd~~~~~~-~~~~~~~~--~~~i~~v~~s  267 (326)
                      ++... +..+.         ..+....+ +  ++.+++...   .++.|.+||+.+... ....+..+  ...+..++|+
T Consensus       262 ~~~~~-l~~~~---------~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          262 KDFRL-LVKGV---------GAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             SSCEE-EEECS---------SCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             CceEE-eecCC---------CceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence            43322 22111         12233344 4  344444443   258999999976521 12333333  4567888888


Q ss_pred             CCCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          268 PDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       268 ~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                       ++.++++...|+..++|.+. +++.+..+..+..+.|..++++|+++.|+
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence             67778888999988887665 46556656543256788899999887665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.32  E-value=1.1e-09  Score=89.30  Aligned_cols=173  Identities=9%  Similarity=-0.072  Sum_probs=119.3

Q ss_pred             eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCC
Q 020454          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (326)
Q Consensus       125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~  204 (326)
                      .+++...++.|..|+.+..          ++.+.. ....+.+++++++++++++...++.|.+||..+++.........
T Consensus        42 l~~~~~~~~~i~~~~~~~~----------~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  110 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ----------LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE  110 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC----------EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred             EEEEeCCCCEEEEEECCCC----------eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence            5777888999999986431          334443 34578999999999988887778899999997776543322111


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEE----Ee-------------CCCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GT-------------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~----~~-------------~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s  267 (326)
                      ..     ....+..+++.|  +++++++    ++             ..+.|..+|.. + + +..+..+......++|+
T Consensus       111 ~~-----~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          111 GK-----KLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-T-LSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             TE-----ECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-C-EEEEECCCSSEEEEEEC
T ss_pred             CC-----CCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC-C-C-EEEeecCCCCCccEEEC
Confidence            00     112356788887  5667776    33             13466666655 3 2 44454555677899999


Q ss_pred             CCCCeEEEEcCCCcEEEEECC-CCeE---EEEEcceecceEEEEEECCCCCEEEEe
Q 020454          268 PDSFNIYIGNGSGDLASVDIR-TGKL---LGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       268 ~~~~~l~~g~~dg~v~iwd~~-~~~~---~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      |+++.+++.+.++.|.+||+. ++++   ...+..+ .+.+.++++++++.+.++.
T Consensus       181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEE
T ss_pred             CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEc
Confidence            999998888888999999997 5554   3334333 5667889999999877766

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.31  E-value=1.1e-08  Score=87.36  Aligned_cols=229  Identities=12%  Similarity=0.050  Sum_probs=142.0

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC--cEEEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRS  139 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g--~v~i~~  139 (326)
                      ++++.++++...++.|++||..++.+......        . .... +++.+        .++.++++..++  .|.+++
T Consensus       139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--------~-~~~~-ia~~~--------~g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--------F-KGGK-PAVTK--------DKQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CSTTEEEEEETTTTEEEEEETTTTEEEEEEET--------C-CBCB-CEECT--------TSSEEEEEBSSTTCEEEEEE
T ss_pred             eCCCCEEEEecCCCcEEEEECCCCEEEEeecc--------C-CCCc-eeEec--------CCCcEEEEecCCCceEEEEE
Confidence            35566777777789999999977776444332        1 1122 44433        455777777766  566666


Q ss_pred             ccccccccccccceEEEE-E--ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCce
Q 020454          140 IEVTKVSAESSCSTVKSW-N--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF  216 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  216 (326)
                      .....        ..+.. .  ......+.+++++|++..|+.+..++.|..||..++..............   ...+.
T Consensus       201 ~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~---~~~P~  269 (409)
T 3hrp_A          201 KASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL---GTNPG  269 (409)
T ss_dssp             GGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC---CCSSC
T ss_pred             cCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC---CCCcc
Confidence            54321        11111 1  11245678899999555555567788999999987653222110000000   00111


Q ss_pred             eeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC---------------CceEEEEecCCCCeEEEEc-CCC
Q 020454          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------TPIKAVAEEPDSFNIYIGN-GSG  280 (326)
Q Consensus       217 ~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~i~~v~~s~~~~~l~~g~-~dg  280 (326)
                      ..++|+|. ++.++++-..++.|+.|+....   +..+..+.               .....++++|+|+++++-. .++
T Consensus       270 ~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~  345 (409)
T 3hrp_A          270 PYLIYYFV-DSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY  345 (409)
T ss_dssp             CEEEEETT-TTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred             ccEEEeCC-CCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence            28899984 4557777788899999997643   33333322               3478899999999777777 789


Q ss_pred             cEEEEECCCCeEEEEEcce--------------ecceEEEEEECCCCCEEEEeccCcc
Q 020454          281 DLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       281 ~v~iwd~~~~~~~~~~~~~--------------~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .|+.||+.+++... +.++              .-.....|+++|++.++++-...+.
T Consensus       346 ~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          346 CLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             EEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             EEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence            99999988887543 3321              0135789999999877777665544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=7.7e-09  Score=94.18  Aligned_cols=275  Identities=11%  Similarity=0.108  Sum_probs=164.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc--------eE-EEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN--------CV-LAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~   85 (326)
                      -++.+++.+|.|..+|..++     +..-++.......        .+ .....    .+..+++++.|+.|..+|..+|
T Consensus        71 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG  141 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDG-----RLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTG  141 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEcCCCeEEEEECCCC-----ceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCC
Confidence            46778888899999999877     4432322111100        00 00111    1336899999999999999999


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEEEc
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      +.+..+......   .....+.+.-..         .++.++++..      +|.|+.+|....+.          +|..
T Consensus       142 ~~~W~~~~~~~~---~~~~~~~~sP~v---------~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~  199 (689)
T 1yiq_A          142 QRAWSVDTRADH---KRSYTITGAPRV---------VNGKVVIGNGGAEFGVRGYVTAYDAETGKE----------AWRF  199 (689)
T ss_dssp             CEEEEEECCSCT---TSCCBCCSCCEE---------ETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEE
T ss_pred             CEeeeecCcCCC---CCCccccCCcEE---------ECCEEEEEeCCCccCCCCEEEEEECCCCcE----------EEEe
Confidence            987776642000   000011100000         1345555543      57787777654331          2221


Q ss_pred             cC--------------------------------CCceEEEEEcCCCCEEEEecCCCe-------------------EEE
Q 020454          160 CA--------------------------------SGTIAFSKVDISEKFSLFGGKGVE-------------------VNV  188 (326)
Q Consensus       160 ~~--------------------------------~~~v~~~~~~~~~~~l~sg~~d~~-------------------i~i  188 (326)
                      ..                                ...-..+.++|+.++++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            10                                011125778888888888887764                   999


Q ss_pred             EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc---EEEEEeCCCeEEEEeCCCCCCceeEEeecCC------
Q 020454          189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------  259 (326)
Q Consensus       189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------  259 (326)
                      +|.++++.++..+....+.+.........-.....  +++   .++.++.+|.++++|.+++ +++........      
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~  356 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--DGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGM  356 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEE
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeecc--CCcEEEEEEEECCCCeEEEEECCCC-CEecccccccccccccc
Confidence            99999999998775433332221111111111111  343   6888999999999999988 44433221110      


Q ss_pred             ---------------------------------ceEEEEecCCCCeEEEEcC----------------------------
Q 020454          260 ---------------------------------PIKAVAEEPDSFNIYIGNG----------------------------  278 (326)
Q Consensus       260 ---------------------------------~i~~v~~s~~~~~l~~g~~----------------------------  278 (326)
                                                       .-..++|+|+...+++...                            
T Consensus       357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  436 (689)
T 1yiq_A          357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT  436 (689)
T ss_dssp             ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred             CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence                                             0112688888877776532                            


Q ss_pred             -----------------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          279 -----------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       279 -----------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                                       +|.|+.||+.+++.+.+++.+  .++..-.+...+.+|+.++.||.+
T Consensus       437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l  498 (689)
T 1yiq_A          437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRV  498 (689)
T ss_dssp             CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEE
T ss_pred             cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcE
Confidence                             378999999999999887743  334444566677899999998864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.28  E-value=1.1e-08  Score=84.59  Aligned_cols=211  Identities=9%  Similarity=-0.064  Sum_probs=130.8

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +.+++++..++.|..|+..+++.. .+..         ...+.++.+.+         ++.+++++.+ .|.+|+.....
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------~~~v~~i~~~~---------dg~l~v~~~~-gl~~~d~~~g~  120 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKIS---------DSKQLIASDD-GLFLRDTATGV  120 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEE---------TTEEEEEETT-EEEEEETTTCC
T ss_pred             CEEEEEECCCCEEEEEECCCCcEE-EEEC---------CCcceEEEEeC---------CCeEEEEECC-CEEEEECCCCc
Confidence            446777778899999999776643 2221         13567676543         3445555544 48888864322


Q ss_pred             cccccccceEEEE-Ecc---CCCceEEEEEcCCCCEEEEecC------CCeEEEEECCCceeeeeecCCCCCCCCcCCCC
Q 020454          145 VSAESSCSTVKSW-NVC---ASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT  214 (326)
Q Consensus       145 ~~~~~~~~~~~~~-~~~---~~~~v~~~~~~~~~~~l~sg~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  214 (326)
                               +..+ ...   ....+..+.++|+++++++...      .+.|..+|  +++.......          ..
T Consensus       121 ---------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----------~~  179 (326)
T 2ghs_A          121 ---------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----------IS  179 (326)
T ss_dssp             ---------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----------ES
T ss_pred             ---------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----------Cc
Confidence                     2222 111   1235889999999987665432      24555565  4443221111          02


Q ss_pred             ceeeeEEeecCCCcEE-EEEeCCCeEEEEeCC--CC-CC-ceeEE---eecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          215 WFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTS--AQ-RR-PVMSF---DFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~--~~-~~-~~~~~---~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                      ....++|+|  +++.+ ++.+.++.|.+||+.  ++ .. ....+   .........++++++|++.++...++.|.+||
T Consensus       180 ~~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          180 IPNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             SEEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             ccCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            356788887  45444 555667899999975  33 11 11122   12334567899999998777766678999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEEC-CCCCEEEEec
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG  320 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~l~s~s  320 (326)
                      . +++.+..+..+ ...+.+++|. |++..|+.++
T Consensus       258 ~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          258 T-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             T-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEE
T ss_pred             C-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEe
Confidence            8 67777777765 6679999998 8877665444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.26  E-value=8.6e-10  Score=100.42  Aligned_cols=82  Identities=9%  Similarity=0.043  Sum_probs=58.2

Q ss_pred             CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC-
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-  314 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~-  314 (326)
                      +|.|+.||+.++ +.+.++..+. +...-.+...+..++.|+.||.++.||.++|+.+.+++........-+.|..+++ 
T Consensus       454 ~g~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          454 SGKLIAWDPVKQ-QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceeEEEEECCCC-CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence            478999999988 5566766553 2333355667889999999999999999999999888743122223466666765 


Q ss_pred             EEEEe
Q 020454          315 IIASC  319 (326)
Q Consensus       315 ~l~s~  319 (326)
                      |+++.
T Consensus       532 yv~~~  536 (689)
T 1yiq_A          532 YVTFM  536 (689)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.26  E-value=2.6e-09  Score=98.03  Aligned_cols=192  Identities=8%  Similarity=-0.001  Sum_probs=123.2

Q ss_pred             CeeeeecccccccccCCCCceEEEEecCC-----cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454          105 GIVGLHLFKRQREESSSRSRTLLTCTTKG-----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       105 ~i~~l~~~~~~~~~~~~~~~~l~~~~~~g-----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  179 (326)
                      .+.+..+.+        ++..|+.+..++     .|++||+.....        +.. ... ...+..++|+|+++.|+.
T Consensus       126 ~~~~~~~SP--------Dg~~la~~~~~~G~~~~~i~v~d~~tg~~--------~~~-~~~-~~~~~~~~wspDg~~l~~  187 (710)
T 2xdw_A          126 ALRGYAFSE--------DGEYFAYGLSASGSDWVTIKFMKVDGAKE--------LPD-VLE-RVKFSCMAWTHDGKGMFY  187 (710)
T ss_dssp             EEEEEEECT--------TSSEEEEEEEETTCSCEEEEEEETTTTEE--------EEE-EEE-EECSCCEEECTTSSEEEE
T ss_pred             EEEEEEECC--------CCCEEEEEEcCCCCceEEEEEEECCCCCC--------Ccc-ccc-CcccceEEEEeCCCEEEE
Confidence            455556544        555666555433     789999765431        111 011 112567899999999988


Q ss_pred             ecCCCe----------------EEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----C
Q 020454          180 GGKGVE----------------VNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----D  236 (326)
Q Consensus       180 g~~d~~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----d  236 (326)
                      ++.++.                |++|++.+++..  .......       ++.++..+.|+|  ++++|+..+.     +
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-------~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~  258 (710)
T 2xdw_A          188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-------EPKWMGGAELSD--DGRYVLLSIREGCDPV  258 (710)
T ss_dssp             EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEECT--TSCEEEEEEECSSSSC
T ss_pred             EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC-------CCeEEEEEEEcC--CCCEEEEEEEccCCCc
Confidence            877765                999999876521  1111110       124567889988  5667776654     6


Q ss_pred             CeEEEEeCCC------CCCceeEEeecCCceEEEEecCCCCeEEEEcCC----CcEEEEECCCCeE--EEEEcceec-ce
Q 020454          237 HQVRLYDTSA------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTGKL--LGCFIGKCS-GS  303 (326)
Q Consensus       237 g~v~iwd~~~------~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d----g~v~iwd~~~~~~--~~~~~~~~~-~~  303 (326)
                      ..|++||+.+      +......+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..|.. ..
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  337 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV  337 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence            7899999876      32235566666555555 588999888755543    3699999987642  233444413 37


Q ss_pred             EEEEEECCCCCEEEEeccCcc
Q 020454          304 IRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +..++|++++.++++...|+.
T Consensus       338 ~~~~~~~~~~~lv~~~~~~g~  358 (710)
T 2xdw_A          338 LEWVACVRSNFLVLCYLHDVK  358 (710)
T ss_dssp             EEEEEEETTTEEEEEEEETTE
T ss_pred             EEEEEEEcCCEEEEEEEECCE
Confidence            888999988888888887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=7.8e-11  Score=98.78  Aligned_cols=145  Identities=13%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee--ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                      .++..+++++...++++|+.+ .+.+|++...+....  ..... .......+. |+.++|    ++++|+++ .++.|+
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~-~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLT-FKWEKEIPD-VIFVCF----HGDQVLVS-TRNALY  109 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCC-CSEEEECTT-EEEEEE----ETTEEEEE-ESSEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccccc-ceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEE
Confidence            368899999999999999987 666799875442111  00000 111223456 999999    34588888 789999


Q ss_pred             EEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      +||+++.. .......++..+.++.+.+.  .+++++.||.|.+||+.++....    + ...|++++|+|+|  ++.|.
T Consensus       110 v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcCCc--eEEEE
Confidence            99999764 34556667778888777654  38888999999999999887643    3 6689999999999  66777


Q ss_pred             cCccC
Q 020454          321 FLEAA  325 (326)
Q Consensus       321 ~D~~~  325 (326)
                      .||.+
T Consensus       180 ~dg~i  184 (388)
T 1xip_A          180 KDRSF  184 (388)
T ss_dssp             TTSCE
T ss_pred             cCCcE
Confidence            78754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=8.5e-09  Score=87.65  Aligned_cols=261  Identities=12%  Similarity=0.027  Sum_probs=152.6

Q ss_pred             ccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEEEeccccceeeeecc
Q 020454           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        24 G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      +.|.|.|..+.     ++..++.-...+ .   +  ..++++++|+++.          .++.|.++|..+.+.+..+..
T Consensus        99 ~~VsVID~~t~-----~vv~~I~vG~~P-g---i--a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v  167 (426)
T 3c75_H           99 TQQFVIDGSTG-----RILGMTDGGFLP-H---P--VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL  167 (426)
T ss_dssp             EEEEEEETTTT-----EEEEEEEECSSC-E---E--EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CeEEEEECCCC-----EEEEEEECCCCC-c---e--EECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence            79999999887     666555443333 2   2  2345566677775          478999999999988877764


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      -.......+ ....++.+.+        ++.+++++..  ++.|.+.|.....        .+..+.+.  ..   ....
T Consensus       168 ~g~~r~~~g-~~P~~~~~sp--------DGk~lyV~n~~~~~~VsVID~~t~k--------vv~~I~v~--g~---~~~~  225 (426)
T 3c75_H          168 PDAPRFLVG-TYQWMNALTP--------DNKNLLFYQFSPAPAVGVVDLEGKT--------FDRMLDVP--DC---YHIF  225 (426)
T ss_dssp             TTCCCCCBS-CCGGGSEECT--------TSSEEEEEECSSSCEEEEEETTTTE--------EEEEEECC--SE---EEEE
T ss_pred             CCccccccC-CCcceEEEcC--------CCCEEEEEecCCCCeEEEEECCCCe--------EEEEEEcC--Cc---eeec
Confidence            100000001 1233355433        5667777764  5789999977644        33344432  11   2223


Q ss_pred             CCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 020454          172 ISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       172 ~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~  250 (326)
                      |++ ..+++.+.|+.+.+.+..+++...... .   .+......-...+.|.+  ++..++..+..+.|.+.|.......
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~~~--dg~~~~~~s~~g~V~ViD~~~~~~~  299 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAFSL--RSGRLVWPTYTGKIFQADLTAEGAT  299 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEECT--TTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeeecC--CCCEEEEEeCCCcEEEEeccCCceE
Confidence            332 444555667777777775554432211 0   00000001011235555  3445556667899999998644110


Q ss_pred             -eeEEee----------cCCceEEEEecCCCCeEEEEcC----------CCcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454          251 -VMSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (326)
Q Consensus       251 -~~~~~~----------~~~~i~~v~~s~~~~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~  309 (326)
                       +..+..          .......++++|+++++++...          ++.|.++|..+.+.+.++..  .....+|+|
T Consensus       300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~gia~  377 (426)
T 3c75_H          300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEIDSINV  377 (426)
T ss_dssp             ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEE
T ss_pred             EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcCeEEE
Confidence             111110          0111223689999988887643          35799999999999999984  346899999


Q ss_pred             CCCCC-EEEEecc-CccC
Q 020454          310 HPTLP-IIASCGF-LEAA  325 (326)
Q Consensus       310 ~p~~~-~l~s~s~-D~~~  325 (326)
                      +|+++ +++++.. ++.+
T Consensus       378 spDg~~~lyv~n~~s~~V  395 (426)
T 3c75_H          378 SQDAEPLLYALSAGTQTL  395 (426)
T ss_dssp             CCSSSCEEEEEETTTTEE
T ss_pred             ccCCCEEEEEEcCCCCeE
Confidence            99998 7877763 5543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=5.1e-10  Score=101.73  Aligned_cols=139  Identities=15%  Similarity=0.031  Sum_probs=91.7

Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCC---C------------------cCCC-----CceeeeEEeecCCCc
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL---G------------------IFTP-----TWFTSAAFLSIDDHR  228 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~------------------~~~~-----~~v~~~~~~p~~~~~  228 (326)
                      +.++.++.+|.+.++|.++++.++..........   .                  +..|     ..-..++|+|.  ..
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~--~~  405 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ--TG  405 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT--TT
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC--CC
Confidence            6888999999999999999998877653321100   0                  0000     00125677773  33


Q ss_pred             EEEEEeC-------------------------------------------CCeEEEEeCCCCCCceeEEeecCCceEEEE
Q 020454          229 KFVAGTN-------------------------------------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVA  265 (326)
Q Consensus       229 ~l~~~~~-------------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~  265 (326)
                      ++++...                                           .|.|..||+.++ +.+.++... .++....
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~-~~~~~g~  483 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHV-SPWNGGT  483 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEES-SSCCCCE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEeecCCC-CCCcCcc
Confidence            6655432                                           278999999988 556666543 3344445


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       266 ~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      +...+..++.++.||.+++||.++++.+.++.........-+.|.++++.++
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            6667889999999999999999999999998743122223455666775443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.21  E-value=1.2e-07  Score=79.85  Aligned_cols=256  Identities=9%  Similarity=0.005  Sum_probs=136.5

Q ss_pred             eeeeeecC--cc---cEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEE
Q 020454           15 LRALTFDS--LG---LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI   79 (326)
Q Consensus        15 ~~l~~~~~--~G---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i   79 (326)
                      -++.+.+.  .+   .|.++|..++     ++...+.....+      ...-++++++++++.          .++.|.+
T Consensus        33 ~~~yv~~~~~~~~~~~v~v~D~~t~-----~~~~~i~~g~~p------~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           33 RRSYINLPAHHSAIIQQWVLDAGSG-----SILGHVNGGFLP------NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             CEEEEeCCcccCCccEEEEEECCCC-----eEEEEecCCCCC------CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence            34555553  33   7899998877     455444432222      122345666777775          3688999


Q ss_pred             EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccc-c-------
Q 020454           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAE-S-------  149 (326)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~-~-------  149 (326)
                      ||..+.+.+..+..-.......+ .....+.+.+        ++.++++++.  ++.|.++| ........ .       
T Consensus       102 iD~~t~~~~~~i~~~~~~~~~~g-~~p~~~~~sp--------DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~  171 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRFDVG-PYSWMNANTP--------NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYH  171 (373)
T ss_pred             EECCCCcEEEEEECCCccccccC-CCccceEECC--------CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEE
Confidence            99988887766653100000001 1223455444        5667777764  57899998 65432111 0       


Q ss_pred             -------------ccceEEEEEccCCCceE----------------EEEEcCCCCEEEEecCCCeEEEEECCCcee--ee
Q 020454          150 -------------SCSTVKSWNVCASGTIA----------------FSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IW  198 (326)
Q Consensus       150 -------------~~~~~~~~~~~~~~~v~----------------~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~  198 (326)
                                   .++.+..++. ....+.                ...+.+++..++..+.++.+.+.|+.....  +.
T Consensus       172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~  250 (373)
T 2mad_H          172 IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee
Confidence                         1122222222 111110                011222222222222455666666644321  11


Q ss_pred             eecCCCCCCC-CcCCCCceeeeEEeecCCCcEEEEEeC----------CCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454          199 TAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (326)
Q Consensus       199 ~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s  267 (326)
                      .+........ .-..+.....+.++|  +++.+.+...          .+.|.++|+.+. +.+.++... .....++|+
T Consensus       251 ~~~~~~~~~~~~~~~p~g~~~~~~s~--d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g-~~p~~i~~s  326 (373)
T 2mad_H          251 PIDALSGGRKADTWRPGGWQQVAYLK--SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLG-HDVDAISVA  326 (373)
T ss_pred             eeeecCCcccccceecCceEeEEECC--CCCEEEEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECC-CCcCeEEEC
Confidence            1100000000 000122233366776  3445555432          358999999987 556777654 357899999


Q ss_pred             CCCC-eEEEEc-CCCcEEEEECCCCeEEEEE
Q 020454          268 PDSF-NIYIGN-GSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       268 ~~~~-~l~~g~-~dg~v~iwd~~~~~~~~~~  296 (326)
                      |||+ .++++. .++.|.+||+.+++.+.++
T Consensus       327 ~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          327 QDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            9999 777777 5899999999999998874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.21  E-value=7.8e-09  Score=95.35  Aligned_cols=223  Identities=10%  Similarity=-0.007  Sum_probs=134.6

Q ss_pred             EeeeCCCCCeEEEEecC-----CcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           58 SIDDSQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        58 ~~~~~~~~~~l~~g~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                      ...+++++++|+.++.+     ..|++||+.+++.+.....         ...+.++.+.+        + ..|+.+..+
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~---------~~~~~~~~wsp--------D-~~l~~~~~~  228 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK---------WVKFSGLAWLG--------N-DALLYSRFA  228 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE---------EEESCCCEEST--------T-SEEEEEECC
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC---------CceeccEEEEC--------C-CEEEEEEec
Confidence            34556777888887664     3599999998887543111         01123455544        5 667777665


Q ss_pred             Cc--------------EEEEEccccccccccccceEEEEEccC-CCceEEEEEcCCCCEEEEecCC-----CeEEEEECC
Q 020454          133 GK--------------ASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLD  192 (326)
Q Consensus       133 g~--------------v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~  192 (326)
                      +.              |++|++....      .....++.... ...+..+.++|+|++|+..+.+     ..|.+||+.
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~  302 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT  302 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred             CcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence            43              7777764322      11223444322 2247899999999988876644     389999998


Q ss_pred             Cc--eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC----CCeEEEEeCCCCC-CceeEEeecCCceEEEE
Q 020454          193 KC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQR-RPVMSFDFRETPIKAVA  265 (326)
Q Consensus       193 ~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~----dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~  265 (326)
                      ++  +....+....         ..+... +.|  ++..|+..+.    ++.|.+||+.... .....+..+...+..++
T Consensus       303 ~~~~~~~~~l~~~~---------~~~~~~-~~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~  370 (741)
T 1yr2_A          303 NGKIGPVTALIPDL---------KAQWDF-VDG--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG  370 (741)
T ss_dssp             TTEECCCEEEECSS---------SSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred             CCCCcccEEecCCC---------CceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence            76  3123332221         112222 235  3446666654    4569999987641 22222334445566778


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECC-CCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          266 EEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       266 ~s~~~~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      |+ ++.++++...|+..+||.+. +++....+..+..+.|..+.++|+++.|+
T Consensus       371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          371 IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence            86 55677788889887777554 45666666542267789999999887554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.17  E-value=7.9e-09  Score=84.72  Aligned_cols=214  Identities=10%  Similarity=0.024  Sum_probs=133.0

Q ss_pred             eCCCCC-eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEE
Q 020454           61 DSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMR  138 (326)
Q Consensus        61 ~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~  138 (326)
                      +.+.++ +++++..++.|..|+. +++. ..+..        ....+.++.+.+         ++.++++.. ++.|..|
T Consensus        52 ~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~--------~~~~~~gl~~d~---------dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           52 WWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD--------ATAFTNGNAVDA---------QQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE--------SCSCEEEEEECT---------TSCEEEEETTTTEEEEE
T ss_pred             EeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC--------CCCccceeeECC---------CCCEEEEECCCCEEEEE
Confidence            334444 6777888899999998 5553 33321        124566676533         334555554 4778888


Q ss_pred             EccccccccccccceEEEEEc----cCCCceEEEEEcCCCCEEEE----ecC-------------CCeEEEEECCCceee
Q 020454          139 SIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLF----GGK-------------GVEVNVWDLDKCEKI  197 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s----g~~-------------d~~i~iwd~~~~~~~  197 (326)
                      +.+.          .+..+..    .....+..+.++++|++.++    |..             .+.|..||..+++..
T Consensus       113 ~~~g----------~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~  182 (305)
T 3dr2_A          113 DADG----------QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ  182 (305)
T ss_dssp             CTTS----------CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred             CCCC----------CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence            7531          1221111    11234667999999998886    432             246777877665543


Q ss_pred             eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC------CeEEEEeCCCCCCceeE---E-eecCCceEEEEec
Q 020454          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLYDTSAQRRPVMS---F-DFRETPIKAVAEE  267 (326)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~---~-~~~~~~i~~v~~s  267 (326)
                      ... ..          .....++|+|  +++.|+.+...      +.|.+||+....  +..   + .........++++
T Consensus       183 ~~~-~~----------~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d  247 (305)
T 3dr2_A          183 RMA-DL----------DHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVD  247 (305)
T ss_dssp             EEE-EE----------SSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEEC
T ss_pred             EEe-cC----------CCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEEC
Confidence            322 10          2356789988  55566666544      789999987542  211   1 1123345678999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       268 ~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      ++|+ |.+++.+ .|.+|+. +++.+..+..+ . .+.+++|.|+++.|+.++.++
T Consensus       248 ~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          248 RGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             TTSC-EEECCSS-EEEEECT-TSCEEEEEECS-S-CCCEEEECTTSCEEEEEETTE
T ss_pred             CCCC-EEEecCC-cEEEECC-CCCEEEEEECC-C-ceeEEEEeCCCCEEEEEcCCe
Confidence            9998 5555555 4999998 57777777754 4 688999999988888776655

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.16  E-value=1.9e-08  Score=84.03  Aligned_cols=251  Identities=9%  Similarity=0.086  Sum_probs=147.7

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCC--------CCceEEEEEeeeCCCCCeEEEEec--CCcEEEEeccccceeeee
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPH--------SSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~   91 (326)
                      .++.|.+||..+.     ++...+.-+.        .+..     +.-++++++++++..  ++.|.++|+.+++.+..+
T Consensus       107 ~~~~VsviD~~t~-----~v~~~I~v~~g~r~~~g~~P~~-----~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          107 RTDYVEVFDPVTL-----LPTADIELPDAPRFLVGTYPWM-----TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             EEEEEEEECTTTC-----CEEEEEEETTCCCCCBSCCGGG-----EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCC-----eEEEEEECCCccccccCCCCce-----EEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            4678999999876     4443332111        1111     123456677888764  689999999999998887


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE-EEEE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA-FSKV  170 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~  170 (326)
                      ..       .   ....+  ++.       ....+++.+.||.+.+.++........   .....++.. ..++. ...|
T Consensus       177 ~v-------~---g~~~~--~P~-------g~~~~~~~~~DG~~~~v~~~~~g~v~~---~~~~~~~~~-~~~~~~~~~~  233 (386)
T 3sjl_D          177 DV-------P---DCYHI--FPT-------APDTFFMHCRDGSLAKVAFGTEGTPEI---THTEVFHPE-DEFLINHPAY  233 (386)
T ss_dssp             EC-------C---SEEEE--EEE-------ETTEEEEEETTSCEEEEECCSSSCCEE---EECCCCSCT-TSCBCSCCEE
T ss_pred             EC-------C---Cccee--ecC-------CCceeEEECCCCCEEEEECCCCCeEEE---eecceeccc-ccccccccee
Confidence            64       1   11111  221       234677888899998888765332210   000111111 12222 2344


Q ss_pred             -cCCCCEEEEecCCCeEEEEECCCcee--eeeecCCCCCCC-CcCCCCceeeeEEeecCCCcEEEEEeC----------C
Q 020454          171 -DISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTN----------D  236 (326)
Q Consensus       171 -~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~l~~~~~----------d  236 (326)
                       .+++++++ .+.++.|.+.|+.+...  .....-...... .-..+.....++++|  +++.+++...          .
T Consensus       234 ~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~--~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          234 SQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR--ALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             ETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET--TTTEEEEEEEECCTTCTTSCE
T ss_pred             EcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC--CCCeEEEEeccccccccCCCC
Confidence             35676555 45589999999976542  222110000000 000112233456666  3445555432          2


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEE-cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      +.|-++|+.+. +.+..+... ..+..+++++|++ +|++. ..++.|.++|..+++.+.+++.  .+.-+.|.+++|
T Consensus       311 ~~V~viD~~t~-kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d  384 (386)
T 3sjl_D          311 RFVVVLDAKTG-ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD  384 (386)
T ss_dssp             EEEEEEETTTC-CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred             CEEEEEECCCC-eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence            57999999987 567777665 4678999999996 67765 4589999999999999999874  334445555554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.14  E-value=6.7e-09  Score=95.08  Aligned_cols=188  Identities=9%  Similarity=-0.049  Sum_probs=116.8

Q ss_pred             CeeeeecccccccccCCCCceEEE-----EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEE
Q 020454          105 GIVGLHLFKRQREESSSRSRTLLT-----CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       105 ~i~~l~~~~~~~~~~~~~~~~l~~-----~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  179 (326)
                      .+.+..+.+        ++..|+.     ++.+..|++||+.......   ...     . .......++|+|+++.|+.
T Consensus       122 ~~~~~~~SP--------DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~-----~-~~~~~~~~~wspDg~~l~~  184 (695)
T 2bkl_A          122 SLGTWAVSW--------DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDV-----I-EGGKYATPKWTPDSKGFYY  184 (695)
T ss_dssp             EEEEEEECT--------TSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCC-----B-SCCTTCCCEECTTSSEEEE
T ss_pred             EEEEEEECC--------CCCEEEEEECCCCCceEEEEEEECCCCCCcC---Ccc-----c-CcccccceEEecCCCEEEE
Confidence            455566544        4555552     2334578999987644210   000     0 0111257899999999998


Q ss_pred             ecCCCe-------------EEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC----e
Q 020454          180 GGKGVE-------------VNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----Q  238 (326)
Q Consensus       180 g~~d~~-------------i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg----~  238 (326)
                      ++.|..             |++|++.++.    .++....         ++.++.++.|+|  ++++|+..+.++    .
T Consensus       185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~---------~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~  253 (695)
T 2bkl_A          185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG---------DPTTFLQSDLSR--DGKYLFVYILRGWSEND  253 (695)
T ss_dssp             EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC---------CTTCEEEEEECT--TSCCEEEEEEETTTEEE
T ss_pred             EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC---------CCEEEEEEEECC--CCCEEEEEEeCCCCceE
Confidence            888766             9999998765    2222221         124577889998  566777766555    6


Q ss_pred             EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc---CCCcEEEEECCCCeE---EEEEcceecceEEEEEECCC
Q 020454          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~~p~  312 (326)
                      |++||...+  ....+..+...+....+ ++|.+++.+.   .++.|.+||+.+++.   ...+..+....+..++|+ +
T Consensus       254 l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~  329 (695)
T 2bkl_A          254 VYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G  329 (695)
T ss_dssp             EEEECTTCS--SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred             EEEEcCCCC--ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C
Confidence            777766543  24555555556666666 5666444444   257899999987653   333332214468888988 6


Q ss_pred             CCEEEEeccCcc
Q 020454          313 LPIIASCGFLEA  324 (326)
Q Consensus       313 ~~~l~s~s~D~~  324 (326)
                      +.++++...|+.
T Consensus       330 ~~lv~~~~~dg~  341 (695)
T 2bkl_A          330 GHLSLEYLKDAT  341 (695)
T ss_dssp             TEEEEEEEETTE
T ss_pred             CEEEEEEEECCE
Confidence            778888887764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.13  E-value=9.7e-08  Score=80.61  Aligned_cols=230  Identities=10%  Similarity=0.057  Sum_probs=134.7

Q ss_pred             CCCe-EEEEecCCcEEEEecccc----ceeeeecccCCCCCC--CCCCCeeeeecccccccccCCCCceEEEEecC----
Q 020454           64 NDPL-LAVARKNGLTDILNPLNG----DLRVAISNAGDSGAQ--PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----  132 (326)
Q Consensus        64 ~~~~-l~~g~~dg~i~i~~~~~~----~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~----  132 (326)
                      +.++ ++.+..+++|.++|+.+.    ++.+.+..   .+..  .+......++..+        + +.++++..+    
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~---~~~~~~~g~s~Ph~~~~~p--------d-Gi~Vs~~g~~~g~  161 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP---EEVKKVSGYSRLHTVHCGP--------D-AIYISALGNEEGE  161 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH---HHHHHHHCEEEEEEEEECS--------S-CEEEEEEEETTSC
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeech---hhcccccCCCcccceeECC--------C-eEEEEcCCCcCCC
Confidence            3444 455677899999998654    34343310   0000  0001122233222        3 366665555    


Q ss_pred             --CcEEEEEccccccccccccceEEEEEccCCC--ceEEEEEcCCCCEEEEec-------------------CCCeEEEE
Q 020454          133 --GKASMRSIEVTKVSAESSCSTVKSWNVCASG--TIAFSKVDISEKFSLFGG-------------------KGVEVNVW  189 (326)
Q Consensus       133 --g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~-------------------~d~~i~iw  189 (326)
                        |.+.++|.+..+        .+..|......  .-+.+.++|+++.+++..                   .+.+|.+|
T Consensus       162 ~~g~v~vlD~~T~~--------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~  233 (462)
T 2ece_A          162 GPGGILMLDHYSFE--------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW  233 (462)
T ss_dssp             SCCEEEEECTTTCC--------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred             CCCeEEEEECCCCe--------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence              678888866544        56666643222  244578899999988874                   36899999


Q ss_pred             ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe------CCCeEEEEeCCCCC-CceeEEe--e----
Q 020454          190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------NDHQVRLYDTSAQR-RPVMSFD--F----  256 (326)
Q Consensus       190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~------~dg~v~iwd~~~~~-~~~~~~~--~----  256 (326)
                      |+.+++.+.++......       .....+.|..+++++++.+++      .+++|.+|....+. ...+.+.  .    
T Consensus       234 D~~~~k~~~tI~vg~~g-------~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          234 DLRKRKRIHSLTLGEEN-------RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             ETTTTEEEEEEESCTTE-------EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             ECCCCcEeeEEecCCCC-------CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence            99988766654432110       123355562233565666555      56788776544220 0011110  0    


Q ss_pred             ------------cCCceEEEEecCCCCeEEEEcC-CCcEEEEECCC---CeEEEEEcce-------------ecceEEEE
Q 020454          257 ------------RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT---GKLLGCFIGK-------------CSGSIRSI  307 (326)
Q Consensus       257 ------------~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~---~~~~~~~~~~-------------~~~~v~~l  307 (326)
                                  .......+.+|+||++|+++.. .+.|.+||+..   .+++..+...             ..+.-+.+
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~  386 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML  386 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred             ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence                        0245788999999999997765 68899999863   4566555421             00135789


Q ss_pred             EECCCCCEEEEec
Q 020454          308 ARHPTLPIIASCG  320 (326)
Q Consensus       308 ~~~p~~~~l~s~s  320 (326)
                      +++|++++|+.+.
T Consensus       387 ~lSpDGk~LyVaN  399 (462)
T 2ece_A          387 EISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSSEEEEEC
T ss_pred             EEcCCCCEEEEEc
Confidence            9999999888776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.11  E-value=2.3e-07  Score=76.02  Aligned_cols=118  Identities=9%  Similarity=0.027  Sum_probs=80.0

Q ss_pred             ceEEEEEc----CCCCEE-EEecCCCeEEEEECC-Cceee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454          164 TIAFSKVD----ISEKFS-LFGGKGVEVNVWDLD-KCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (326)
Q Consensus       164 ~v~~~~~~----~~~~~l-~sg~~d~~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~  235 (326)
                      ....++++    ++++.| ++...++.|.+||+. +++..  .........     ....+..+++.+  +++++++...
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-----~~~~p~~i~~d~--~G~l~v~~~~  245 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-----HEGGADGMDFDE--DNNLLVANWG  245 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-----SSCEEEEEEEBT--TCCEEEEEET
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC-----CCCCCCceEECC--CCCEEEEEcC
Confidence            46788899    998655 444667899999986 33321  011111100     002356778876  5667777778


Q ss_pred             CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT  289 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~  289 (326)
                      ++.|.+||..++ +.+..+..+...+.+++|+|+++.|+ +...++.|..|++..
T Consensus       246 ~~~i~~~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          246 SSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEcCCCC-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            899999999855 34556666667899999999999665 445668899999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.10  E-value=6.2e-08  Score=82.37  Aligned_cols=238  Identities=9%  Similarity=0.060  Sum_probs=143.1

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCC--------CCCceEEEEEeeeCCCCCeEEEEec--CCcEEEEeccccceeeee
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDP--------HSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~i~~~~~~~~~~~~   91 (326)
                      .++.|.++|..+.     ++.....-+        ..+.     .+.-++++++|+++..  ++.|.++|+.+++.+..+
T Consensus       147 ~~~~VsviD~~t~-----~vv~~I~v~g~~r~~~g~~P~-----~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I  216 (426)
T 3c75_H          147 RTDYVEVFDPVTF-----LPIADIELPDAPRFLVGTYQW-----MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML  216 (426)
T ss_dssp             EEEEEEEECTTTC-----CEEEEEEETTCCCCCBSCCGG-----GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCC-----cEEEEEECCCccccccCCCcc-----eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence            4678999998876     443332211        1111     1223566778888764  588999999999988877


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      ..          .....+  ++.       ....+++.+.||.+.+.+..... .....  . ..++.........+.+.
T Consensus       217 ~v----------~g~~~~--~p~-------g~~~~v~~~~dG~~~~V~~~~~~-v~~~~--~-~~~~v~~~p~~~~~~~~  273 (426)
T 3c75_H          217 DV----------PDCYHI--FPA-------SPTVFYMNCRDGSLARVDFADGE-TKVTN--T-EVFHTEDELLINHPAFS  273 (426)
T ss_dssp             EC----------CSEEEE--EEE-------ETTEEEEEETTSSEEEEECCTTC-CEEEE--C-CCCSCTTSCBCSCCEEC
T ss_pred             Ec----------CCceee--ccC-------CCcEEEEEcCCCCEEEEECCCCc-EEEEe--e-eeeccCCCceeeEeeec
Confidence            64          111112  111       12467778889998888873222 11000  0 12222221112235678


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeee--eecCCCCCCCCc-CCCCceeeeEEeecCCCcEEEEEe----------CCCe
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGT----------NDHQ  238 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~----------~dg~  238 (326)
                      ++++.++.....+.+.+.|+.......  ............ ..+.....++++|.  ++++++..          ..+.
T Consensus       274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d--g~rlyVa~~~~~~gthk~~s~~  351 (426)
T 3c75_H          274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ--SDRIYLLVDQRDEWKHKAASRF  351 (426)
T ss_dssp             TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG--GTEEEEEEEECCTTCTTSCEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC--CCEEEEEecccccccccCCCCE
Confidence            888766666778899999987554321  111000000000 01112223678874  33444442          2458


Q ss_pred             EEEEeCCCCCCceeEEeecCCceEEEEecCCCC-eEEEEc-CCCcEEEEECCCCeEEEEE
Q 020454          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~g~-~dg~v~iwd~~~~~~~~~~  296 (326)
                      |.++|+.+. +.+.++.... ....++|+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus       352 VsVID~~T~-kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          352 VVVLNAETG-ERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEETTTC-CEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCC-eEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999999987 6677776553 578899999999 888877 5899999999999999887

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.07  E-value=2.2e-11  Score=102.74  Aligned_cols=173  Identities=10%  Similarity=-0.014  Sum_probs=92.5

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      .++.+++++.||.++.||....+          .+|.... ..+.+..+..++..+++++.|+.|+.||.++++.++...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~----------~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~   76 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS----------IKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP   76 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC----------EEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC----------EEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence            46789999999999999965433          2355443 445444455667788888899999999999988776654


Q ss_pred             CCCCCCCCcCCCCcee-eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCC
Q 020454          202 PPPKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~-~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg  280 (326)
                      .....        .+. +..+.   .+..+++++.++.|+.||.+++ +.+..+..+.    ...++|++..+++++.++
T Consensus        77 ~~~~~--------~~~~sp~~~---~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg  140 (369)
T 2hz6_A           77 FTIPE--------LVQASPCRS---SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEY  140 (369)
T ss_dssp             CCHHH--------HHTTCSCC--------CCCCEEEEEEEEECCC---------------------------EEEEEEEE
T ss_pred             ccCcc--------ccccCceEe---cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCC
Confidence            32110        000 00111   2236788888999999999988 4456655442    234567888999999999


Q ss_pred             cEEEEECCCCeEEEEEcceecceEEEEEECCCC---CEEEEeccCcc
Q 020454          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCGFLEA  324 (326)
Q Consensus       281 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~---~~l~s~s~D~~  324 (326)
                      .|+.||.++|+.+.++..+   .....++.++.   ..++.++.||.
T Consensus       141 ~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~  184 (369)
T 2hz6_A          141 TITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGL  184 (369)
T ss_dssp             EEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCE
T ss_pred             EEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCE
Confidence            9999999999887666532   12233343321   44566666664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.07  E-value=6.6e-07  Score=76.35  Aligned_cols=235  Identities=9%  Similarity=-0.023  Sum_probs=135.4

Q ss_pred             eeeec-CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCC--cEEEEeccccceeeeecc
Q 020454           17 ALTFD-SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG--LTDILNPLNGDLRVAISN   93 (326)
Q Consensus        17 l~~~~-~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg--~i~i~~~~~~~~~~~~~~   93 (326)
                      |...+ .++.|++|+..++     .+.......... .   +  ..+..++.|+++..++  .|.+|+...+.....+..
T Consensus       144 lyv~d~~~~~I~~id~~~g-----~~~~~~~~~~~~-~---i--a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~  212 (409)
T 3hrp_A          144 VLAYQRDDPRVRLISVDDN-----KVTTVHPGFKGG-K---P--AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ  212 (409)
T ss_dssp             EEEEETTTTEEEEEETTTT-----EEEEEEETCCBC-B---C--EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred             EEEEecCCCcEEEEECCCC-----EEEEeeccCCCC-c---e--eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence            44443 4577888887765     332222221111 1   2  2344555788887766  788888865544333311


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEE----EccCCCc--eEE
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW----NVCASGT--IAF  167 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~--v~~  167 (326)
                      ...    .....+.++++.+        .++.|+.+..++.|+.|+.+...         ..++    .......  ...
T Consensus       213 ~~~----~~~~~p~~iav~p--------~~g~lyv~d~~~~I~~~d~~~~~---------~~~~~~~~~~g~~~~~P~~~  271 (409)
T 3hrp_A          213 LGS----TFSGKIGAVALDE--------TEEWLYFVDSNKNFGRFNVKTQE---------VTLIKQLELSGSLGTNPGPY  271 (409)
T ss_dssp             CCT----TSCSCCCBCEECT--------TSSEEEEECTTCEEEEEETTTCC---------EEEEEECCCCSCCCCSSCCE
T ss_pred             ccc----hhcCCcEEEEEeC--------CCCeEEEEECCCcEEEEECCCCC---------EEEEecccccCCCCCCcccc
Confidence            100    0123455566533        35677777778888888865432         1222    1111111  128


Q ss_pred             EEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC----cCCCCceeeeEEeecCCCcEEEEEe-CCCeEEE
Q 020454          168 SKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG----IFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRL  241 (326)
Q Consensus       168 ~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~i  241 (326)
                      ++++|+ +.++++-..++.|+.|+.........-.........    ...-.+...+++.|  +++++++-+ .++.|+.
T Consensus       272 ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~--dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          272 LIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE--DGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT--TCCEEEEETTTTCEEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC--CCCEEEEeCCCCCEEEE
Confidence            999995 566666677889999997654222211110000000    00113567889987  566777877 8999999


Q ss_pred             EeCCCCCCceeEEeec---------------CCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          242 YDTSAQRRPVMSFDFR---------------ETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       242 wd~~~~~~~~~~~~~~---------------~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                      ||+..+ . +..+..+               -.....++++++|.++++-..++.|+.+++
T Consensus       350 ~~~~~G-~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          350 LDILDG-Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EETTTT-E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EECCCC-E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            997655 2 4444443               135788999999877777778888888775

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.07  E-value=1.4e-07  Score=78.90  Aligned_cols=259  Identities=10%  Similarity=0.010  Sum_probs=139.1

Q ss_pred             cEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEEEeccccceeeeeccc
Q 020454           25 LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        25 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      .|.|.|..+.     ++..++.-...+ . +.    -++++++++++.          .++.|.+||+.+++.+..+..-
T Consensus        47 ~vsvID~~t~-----~v~~~i~vG~~P-~-i~----~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~  115 (368)
T 1mda_H           47 ENWVSCAGCG-----VTLGHSLGAFLS-L-AV----AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             EEEEEETTTT-----EEEEEEEECTTC-E-EE----ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             eEEEEECCCC-----eEEEEEeCCCCC-c-eE----ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            7889998877     666666544443 2 22    234555677775          4789999999999998887641


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEE--EEcccccc-----------------ccccccce
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASM--RSIEVTKV-----------------SAESSCST  153 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i--~~~~~~~~-----------------~~~~~~~~  153 (326)
                      .....+.. ....++.+.+        ++..++++..  +..+.+  +|......                 .....++.
T Consensus       116 ~~~~~~~g-~~P~~ia~Sp--------DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~  186 (368)
T 1mda_H          116 DAPRFSVG-PRVHIIGNCA--------SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             TSCSCCBS-CCTTSEEECT--------TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTS
T ss_pred             CccccccC-CCcceEEEcC--------CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCC
Confidence            00000000 1123355433        5567777764  456777  66543000                 00111222


Q ss_pred             EEEEEccC----CCceE------------EEEEcCCCCEEEEecCCCeEEEEECCCcee--eeeecCCCCC-CCCcCCCC
Q 020454          154 VKSWNVCA----SGTIA------------FSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKN-SLGIFTPT  214 (326)
Q Consensus       154 ~~~~~~~~----~~~v~------------~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~-~~~~~~~~  214 (326)
                      +...+...    .+.+.            -.. .+++..++..+. +.+.+.|+.....  +......... ...-..+.
T Consensus       187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~  264 (368)
T 1mda_H          187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             EEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence            22222221    00000            001 333433334444 6777777754321  1111100000 00000011


Q ss_pred             ceeeeEEeecCCCcEEEEE-e---C-----CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE-EEEc-CCCcEE
Q 020454          215 WFTSAAFLSIDDHRKFVAG-T---N-----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGN-GSGDLA  283 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~-~---~-----dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~g~-~dg~v~  283 (326)
                      ....+.++|  +++.++++ .   .     ++.+.++|+.+. +.+..+.... ....++|+|||+++ ++.. .++.|.
T Consensus       265 g~~~v~~s~--dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          265 GFQMVAKLK--NTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             SSSCEEEET--TTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             cceeeEEcC--CCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEE
Confidence            112257877  44455554 3   2     235669999987 5577776553 57889999999854 4555 589999


Q ss_pred             EEECCCCeEEEEEcceecceEEEEEECC
Q 020454          284 SVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      ++|+.+++.+.+++..  .....|++.+
T Consensus       341 VID~~t~kvv~~I~vg--~~P~~i~~~~  366 (368)
T 1mda_H          341 IYDAASDQDQSSVELD--KGPESLSVQN  366 (368)
T ss_dssp             EEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred             EEECCCCcEEEEEECC--CCCCEEEeec
Confidence            9999999999998843  3455666654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.06  E-value=9.3e-08  Score=78.97  Aligned_cols=210  Identities=11%  Similarity=0.035  Sum_probs=133.2

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +..+.+++.++.|..+|.. ++.......        ....+..+...         .++.++.++.++.+..++.. ..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--------~~~~~~~~~~~---------~~g~l~vgt~~~~l~~~d~~-g~  167 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--------KKAIYATPIVS---------EDGTIYVGSNDNYLYAINPD-GT  167 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC--------SSCCCSCCEEC---------TTSCEEEECTTSEEEEECTT-SC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC--------CCceeeeeEEc---------CCCEEEEEcCCCEEEEECCC-CC
Confidence            3458889889999999987 665444432        11222323221         25678888888998888854 21


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                              .+..+.. ....+.++...+++.+.+ ++  +.|..+| .+++..+......         ..+.++...+ 
T Consensus       168 --------~~~~~~~-~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~---------~~~~~~~~~~-  224 (330)
T 3hxj_A          168 --------EKWRFKT-NDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGY---------WTVTRPAISE-  224 (330)
T ss_dssp             --------EEEEEEC-SSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSS---------CCCSCCEECT-
T ss_pred             --------EeEEEec-CCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCC---------cceeceEECC-
Confidence                    2222222 133456666777777554 44  7899999 7777766654322         2244555543 


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceE
Q 020454          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (326)
Q Consensus       225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v  304 (326)
                       ++ .+..++.++.+..+|.. + ..+..+......+..+.+.+++ .|++++.+|.|..+|. +++.+..+... ...+
T Consensus       225 -~g-~l~v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~  297 (330)
T 3hxj_A          225 -DG-TIYVTSLDGHLYAINPD-G-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWII  297 (330)
T ss_dssp             -TS-CEEEEETTTEEEEECTT-S-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCC
T ss_pred             -CC-eEEEEcCCCeEEEECCC-C-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-Cccc
Confidence             44 56777778888888854 3 3455555544444555665555 6778888999999996 77777776654 5667


Q ss_pred             EEEEECCCCCEEEEeccCcc
Q 020454          305 RSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       305 ~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .++...+++.+ ..++.+|.
T Consensus       298 ~~~~~d~~g~l-~~gt~~G~  316 (330)
T 3hxj_A          298 ATPVIDENGTI-YFGTRNGK  316 (330)
T ss_dssp             SCCEECTTCCE-EEECTTSC
T ss_pred             cceEEcCCCEE-EEEcCCCe
Confidence            78888788764 45667765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.06  E-value=8.8e-08  Score=80.85  Aligned_cols=231  Identities=12%  Similarity=0.089  Sum_probs=130.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -++++++.+|.|..+|..++     ++.-++...........+      .+..+++++.+|.|..+|..+++.+..+...
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG-----~~~W~~~~~~~~~~~p~~------~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDG-----TVAWQTKVAGEALSRPVV------SDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTC-----CEEEEEECSSCCCSCCEE------ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEcCCCEEEEEECCCC-----CEEEEEeCCCceEcCCEE------ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            46788888999999999877     442222221111110011      1236888999999999999999877665531


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-----------------------------
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------------------  145 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-----------------------------  145 (326)
                      .+..  .. ........          .++.+++++.+|.+..++......                             
T Consensus       173 ~~~~--~~-~~~~~~~~----------~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~  239 (376)
T 3q7m_A          173 MPSL--SL-RGESAPTT----------AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN  239 (376)
T ss_dssp             C--------CCCCCCEE----------ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET
T ss_pred             CCce--ee-cCCCCcEE----------ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC
Confidence            1000  00 00000111          224555566666665555432111                             


Q ss_pred             ---ccccccceEEEEEccCCCc--------eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCC
Q 020454          146 ---SAESSCSTVKSWNVCASGT--------IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT  214 (326)
Q Consensus       146 ---~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  214 (326)
                         ..+..++.+..++......        ...+..  ++..++.++.++.|..+|..+++.++.........       
T Consensus       240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~-------  310 (376)
T 3q7m_A          240 GVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL-------  310 (376)
T ss_dssp             TEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC-------
T ss_pred             CEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc-------
Confidence               0001123333444332222        222222  35667777889999999999999888765322111       


Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEE-EEecCCCCeEEEEcCCCcEEEEE
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                       +......   + ..++.++.+|.+..+|..++ +.+..+......+.. ...  .+..|++++.+|.|+.||
T Consensus       311 -~~~~~~~---~-~~l~v~~~~g~l~~~d~~tG-~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          311 -LTSPVLY---N-GNLVVGDSEGYLHWINVEDG-RFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -CCCCEEE---T-TEEEEECTTSEEEEEETTTC-CEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             -ccCCEEE---C-CEEEEEeCCCeEEEEECCCC-cEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence             1122222   2 37888999999999999987 556666553333322 222  356888999999999987

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.06  E-value=4.3e-07  Score=75.67  Aligned_cols=239  Identities=7%  Similarity=-0.042  Sum_probs=136.1

Q ss_pred             CCCCeEEEEe--cCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCc
Q 020454           63 QNDPLLAVAR--KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGK  134 (326)
Q Consensus        63 ~~~~~l~~g~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~  134 (326)
                      ++++++++..  .++.++||.+.++++ ..+...... ...+-..+.++.+.+         ++.|+.+..      ++.
T Consensus        26 ~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~-~~~~~~~p~gv~~d~---------~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           26 PDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGN-AIITFDTVLGIKSDG---------NGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             TTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSS-CCCCCSCEEEEEECS---------SSEEEEEECHHHHTSCCE
T ss_pred             CCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccC-cccceeEeeEEEEcC---------CCcEEEEcCCCCcCCCCe
Confidence            3455566643  234356666544543 222211000 112334667777533         244555442      478


Q ss_pred             EEEEEccccccccccccceEEEEEccC-----CCceEEEEEcCCCCEE-EEec---CCCeEEEEECCCceeeeeecCCCC
Q 020454          135 ASMRSIEVTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFS-LFGG---KGVEVNVWDLDKCEKIWTAKPPPK  205 (326)
Q Consensus       135 v~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l-~sg~---~d~~i~iwd~~~~~~~~~~~~~~~  205 (326)
                      |.+||+....        .++.+....     ...+..+++++++..+ ++-.   .++.|.+||+.+++....+..+..
T Consensus        95 i~~~d~~tg~--------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           95 LVAWDTLNNQ--------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             EEEEETTTTE--------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             EEEEECCCCe--------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence            8888875432        344555421     2346889999865444 4544   578999999988776554433211


Q ss_pred             CC---CC-------cC----------CCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCC---CC----Ccee--EEe
Q 020454          206 NS---LG-------IF----------TPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSA---QR----RPVM--SFD  255 (326)
Q Consensus       206 ~~---~~-------~~----------~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~---~~----~~~~--~~~  255 (326)
                      ..   ..       +.          ....+..++|+|  +++.|+.+..++ .+..++...   ..    +...  ...
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  244 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY  244 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred             ccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence            00   00       00          012367899988  565677666555 555555321   10    0000  111


Q ss_pred             ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccC
Q 020454          256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       256 ~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D  322 (326)
                      .+......++++++|+++++...++.|.+||..+++..............+++|.+++.++++.+..
T Consensus       245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            3334567789999999888988999999999866765433332113468899999999887777643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.05  E-value=3.7e-07  Score=82.94  Aligned_cols=274  Identities=13%  Similarity=0.080  Sum_probs=158.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCc--------eE-EEEEeeeCCCCCeEEEEecCCcEEEEecccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN--------CV-LAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~   85 (326)
                      -++.+++.+|.|..+|..++     +..-++.......        .+ -....    .+..+++++.|+.|..+|..+|
T Consensus        67 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG  137 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASG-----KELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTG  137 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEECCCCeEEEEECCCC-----hhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCC
Confidence            45777778889999998877     4432222111100        00 00111    1236888999999999999999


Q ss_pred             ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEEEc
Q 020454           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      +.+..+......    ....+.+.-..         .++.++++..      +|.|..+|....+.          +|..
T Consensus       138 ~~~W~~~~~~~~----~~~~~~~~P~v---------~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~  194 (668)
T 1kv9_A          138 KAIWSQQTTDPA----KPYSITGAPRV---------VKGKVIIGNGGAEYGVRGFVSAYDADTGKL----------AWRF  194 (668)
T ss_dssp             CEEEEEECSCTT----SSCBCCSCCEE---------ETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEE
T ss_pred             CEeeeeccCCCC----CcceecCCCEE---------ECCEEEEeCCCCCcCCCCEEEEEECCCCcE----------EEEe
Confidence            988776642110    00111110000         2345665543      47777777654331          2221


Q ss_pred             cC--------------------------------CCceEEEEEcCCCCEEEEecCCC-------------------eEEE
Q 020454          160 CA--------------------------------SGTIAFSKVDISEKFSLFGGKGV-------------------EVNV  188 (326)
Q Consensus       160 ~~--------------------------------~~~v~~~~~~~~~~~l~sg~~d~-------------------~i~i  188 (326)
                      ..                                ......++++|+.++++.+..++                   .|..
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            10                                01112467888888888887765                   3999


Q ss_pred             EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc---EEEEEeCCCeEEEEeCCCCCCceeEEeecC-------
Q 020454          189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------  258 (326)
Q Consensus       189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------  258 (326)
                      +|.++++.++..+....+.+............+..  +++   .++.++.+|.++++|..++ +.+.......       
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~  351 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKV  351 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEE
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCC-CEecccccccccccccc
Confidence            99999999998775433333221111111111111  343   6888999999999999987 4443322111       


Q ss_pred             -----Cc------------------------eEEEEecCCCCeEEEE---------------------------------
Q 020454          259 -----TP------------------------IKAVAEEPDSFNIYIG---------------------------------  276 (326)
Q Consensus       259 -----~~------------------------i~~v~~s~~~~~l~~g---------------------------------  276 (326)
                           .+                        -..++++|+...+++.                                 
T Consensus       352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (668)
T 1kv9_A          352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV  431 (668)
T ss_dssp             CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred             ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence                 00                        0125777776665542                                 


Q ss_pred             ---cCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          277 ---NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       277 ---~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                         ..+|.|..||+.+++.+.+++.  ..++....+...+.+|+.++.||.+
T Consensus       432 p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l  481 (668)
T 1kv9_A          432 PAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQM  481 (668)
T ss_dssp             CGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             CCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccc
Confidence               1347899999999999877763  3344444444567788888888753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.01  E-value=2e-07  Score=83.02  Aligned_cols=273  Identities=12%  Similarity=0.122  Sum_probs=153.0

Q ss_pred             eeeeeecC-cccEEEEEe-cCCcCCCcceeeeccCCCCCc-----e--E--EEEEeeeCCCCCeEEEEecCCcEEEEecc
Q 020454           15 LRALTFDS-LGLIKVIEA-RGEHGGVPKVVERWGDPHSSN-----C--V--LAASIDDSQNDPLLAVARKNGLTDILNPL   83 (326)
Q Consensus        15 ~~l~~~~~-~G~i~vw~~-~~~~~~~~~~~~~~~~~~~~~-----~--~--~~~~~~~~~~~~~l~~g~~dg~i~i~~~~   83 (326)
                      -++.+++. +|.|.-+|. .++     +..-++.......     +  .  .....    .+..+++++.|+.|..+|..
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~  133 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPG-----KIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAK  133 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEeCCCCc-----cEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECC
Confidence            45666676 788888888 766     3322222111100     0  0  00111    13368889999999999999


Q ss_pred             ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEEEE
Q 020454           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKSW  157 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~~~  157 (326)
                      +|+.+..+..-...    ....+.+.-..         .++.+++++.      +|.|..+|....+          .+|
T Consensus       134 tG~~~W~~~~~~~~----~~~~~~~~P~v---------~~g~v~vg~~~~~~~~~g~v~a~D~~tG~----------~~W  190 (571)
T 2ad6_A          134 TGKINWEVEVCDPK----VGSTLTQAPFV---------AKDTVLMGCSGAELGVRGAVNAFDLKTGE----------LKW  190 (571)
T ss_dssp             TCCEEEEEECCCGG----GTCBCCSCCEE---------ETTEEEEECBCGGGTCCCEEEEEETTTCC----------EEE
T ss_pred             CCCEEEEecCCCCC----ccceeccCCEE---------ECCEEEEEecCCccCCCCEEEEEECCCCc----------EEE
Confidence            99987766531100    00011100000         2346666665      6888888865433          122


Q ss_pred             EccCCCc---------------------------------------eEEEEEcCCCCEEEEecCC---------------
Q 020454          158 NVCASGT---------------------------------------IAFSKVDISEKFSLFGGKG---------------  183 (326)
Q Consensus       158 ~~~~~~~---------------------------------------v~~~~~~~~~~~l~sg~~d---------------  183 (326)
                      +......                                       -..++++++...++.+..+               
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            2211110                                       0135566666666655432               


Q ss_pred             -CeEEEEECCCceeeeeecCCCCCCCCcCCC-CceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454          184 -VEVNVWDLDKCEKIWTAKPPPKNSLGIFTP-TWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (326)
Q Consensus       184 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  258 (326)
                       +.|..+|.++++.++..+....+.+..... ..+. +...+  ++   +.++.++.+|.++++|..++ +.+..+....
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~--~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~~~  346 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV--NGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVDP  346 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE--TTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESST
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc--CCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecccC
Confidence             369999999999998876543322211110 1111 11111  45   35778889999999999887 5555544321


Q ss_pred             -------------Cce--------------------------EEEEecCCCCeEEEEc----------------------
Q 020454          259 -------------TPI--------------------------KAVAEEPDSFNIYIGN----------------------  277 (326)
Q Consensus       259 -------------~~i--------------------------~~v~~s~~~~~l~~g~----------------------  277 (326)
                                   .++                          ..++++|+...+++..                      
T Consensus       347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g  426 (571)
T 2ad6_A          347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG  426 (571)
T ss_dssp             TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence                         111                          2357788877777653                      


Q ss_pred             ---------------CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          278 ---------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       278 ---------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                                     .+|.|..||+.+++.+.+++.  ..++.+..+...+..++.++.||.+
T Consensus       427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l  487 (571)
T 2ad6_A          427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYL  487 (571)
T ss_dssp             EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEE
T ss_pred             ccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeE
Confidence                           357899999999999877763  3333333333345667778777753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=1.7e-06  Score=68.50  Aligned_cols=182  Identities=13%  Similarity=0.024  Sum_probs=117.0

Q ss_pred             eeeeecccccccccCCCCceEEEEec---CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC
Q 020454          106 IVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK  182 (326)
Q Consensus       106 i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~  182 (326)
                      ..++.+.+        + +.|+.++.   ++.|.++|+....        .++...+........++++. +++.++.-.
T Consensus        23 ~~Gl~~~~--------d-g~Lyvstg~~~~s~v~~iD~~tg~--------v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~   84 (266)
T 2iwa_A           23 TQGLVYAE--------N-DTLFESTGLYGRSSVRQVALQTGK--------VENIHKMDDSYFGEGLTLLN-EKLYQVVWL   84 (266)
T ss_dssp             EEEEEECS--------T-TEEEEEECSTTTCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEETT
T ss_pred             cccEEEeC--------C-CeEEEECCCCCCCEEEEEECCCCC--------EEEEEecCCCcceEEEEEeC-CEEEEEEec
Confidence            46777633        2 46666543   5789999976544        34444443333344566653 344455567


Q ss_pred             CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC----
Q 020454          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE----  258 (326)
Q Consensus       183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----  258 (326)
                      ++.+.++|..+.+.+..+......           ...+.+  +++.++++..+++|.++|+.+. +.+..+....    
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~-----------g~glt~--Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p  150 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD-----------GWGLAT--DGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHR  150 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS-----------CCEEEE--CSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC-----------eEEEEE--CCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcc
Confidence            889999999999888776532111           123445  3445666667899999999987 5566665332    


Q ss_pred             -CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce-ec-----------ceEEEEEECCCCCEEEEec
Q 020454          259 -TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CS-----------GSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       259 -~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~-----------~~v~~l~~~p~~~~l~s~s  320 (326)
                       ...+.+.|. +|...+....++.|.+.|..+++.+..+... ..           ...+.|+|+|+++.++.++
T Consensus       151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence             136678887 6744445446789999999999999888631 00           2458999999876554443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.96  E-value=1.1e-07  Score=87.71  Aligned_cols=180  Identities=12%  Similarity=0.023  Sum_probs=110.7

Q ss_pred             CCceEEEEecC-C----cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCe-----------
Q 020454          122 RSRTLLTCTTK-G----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVE-----------  185 (326)
Q Consensus       122 ~~~~l~~~~~~-g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~-----------  185 (326)
                      ++..|+.+..+ |    .|++||+......        .. .. ....+..++|+|+ +.|+.+..+..           
T Consensus       173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~--------~~-~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPL--------AD-EL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             TSSEEEEEEEETTCSEEEEEEEETTTCCEE--------EE-EE-EEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCC--------Cc-cC-CCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            55566655443 3    5888887654321        11 00 0112346889999 88888776553           


Q ss_pred             ---EEEEECCCcee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEEeCCCCCCc-eeEE
Q 020454          186 ---VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQRRP-VMSF  254 (326)
Q Consensus       186 ---i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iwd~~~~~~~-~~~~  254 (326)
                         |.+|++.++..  ........       ++.++.++.|+|  ++++|+..+.+     ..|++||+.++... ...+
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPE-------LPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCC-------CCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence               88999876542  11111111       123577888987  67677776644     38999998754112 4455


Q ss_pred             eecCCceEEEEecCCCCeEEEEcC----CCcEEEEECCCC--eEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          255 DFRETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       255 ~~~~~~i~~v~~s~~~~~l~~g~~----dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      ..+...+... ++|+|+.|+..+.    ++.|.+||+.++  +....+..+ ...+..++|. ++.++++...|+.
T Consensus       313 ~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          313 IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCE
Confidence            5554445554 3488988886665    345999999874  344445544 6677788887 5667888777764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.95  E-value=5.3e-08  Score=81.38  Aligned_cols=217  Identities=9%  Similarity=-0.116  Sum_probs=127.1

Q ss_pred             cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe----------cCCcEEEEEcccccc
Q 020454           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----------TKGKASMRSIEVTKV  145 (326)
Q Consensus        76 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~----------~~g~v~i~~~~~~~~  145 (326)
                      +|.++|..+++.+..+..       . ..+  ++.+.+        +...++++.          .++.|.+||..... 
T Consensus        47 ~vsvID~~t~~v~~~i~v-------G-~~P--~i~~sp--------Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-  107 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG-------A-FLS--LAVAGH--------SGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-  107 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE-------C-TTC--EEEECT--------TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-
T ss_pred             eEEEEECCCCeEEEEEeC-------C-CCC--ceEECC--------CCCEEEEEcccccccccCCCCCEEEEEECCCCC-
Confidence            888999999999888874       2 233  566544        556777775          37889999977654 


Q ss_pred             ccccccceEEEEEccC------CCceEEEEEcCCCCEEEEecC--CCeEEE--EECCCceeeeeecC-------------
Q 020454          146 SAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGK--GVEVNV--WDLDKCEKIWTAKP-------------  202 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~sg~~--d~~i~i--wd~~~~~~~~~~~~-------------  202 (326)
                             .++.+.+..      ......+.++|++++++++..  ++.+.+  +|+.+-+.+ ....             
T Consensus       108 -------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i-~v~~~~~~~p~g~~~~~  179 (368)
T 1mda_H          108 -------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFHIHPGAAATHY  179 (368)
T ss_dssp             -------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE-ECSSCCCCEEEETTEEE
T ss_pred             -------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEE-ECCCceEEccCCCeEEE
Confidence                   334443320      123567899999999888764  467888  998761111 0000             


Q ss_pred             --CCCCC---CCcCC----CCcee------------eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEeec---
Q 020454          203 --PPKNS---LGIFT----PTWFT------------SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFR---  257 (326)
Q Consensus       203 --~~~~~---~~~~~----~~~v~------------~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~---  257 (326)
                        .....   ..+..    ...+.            -.. .+  ++..++..+. +.|.+.|...... .+..+...   
T Consensus       180 ~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~--~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~  255 (368)
T 1mda_H          180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-AN--YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ET--TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             EEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cc--cCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence              00000   00000    00000            001 22  2234444444 7888888764311 11111111   


Q ss_pred             -------CCceEEEEecCCCCeEEEEcC-C--------CcEEEEECCCCeEEEEEcceecceEEEEEECCCCC-EEEEec
Q 020454          258 -------ETPIKAVAEEPDSFNIYIGNG-S--------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCG  320 (326)
Q Consensus       258 -------~~~i~~v~~s~~~~~l~~g~~-d--------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s  320 (326)
                             ......++++|+++.++++.. .        +.+.++|+.+.+.+.++...  .....|+|+|+++ ++++..
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEE
T ss_pred             ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEcc
Confidence                   011122689999998887643 2        35679999999999888743  3789999999997 556665


Q ss_pred             -cCccC
Q 020454          321 -FLEAA  325 (326)
Q Consensus       321 -~D~~~  325 (326)
                       .++.+
T Consensus       334 ~~~~~V  339 (368)
T 1mda_H          334 AGTEVL  339 (368)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence             46654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.93  E-value=9.3e-07  Score=72.00  Aligned_cols=176  Identities=10%  Similarity=0.015  Sum_probs=110.1

Q ss_pred             ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC
Q 020454          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (326)
Q Consensus       124 ~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  203 (326)
                      ..+++...++.|+.|+....         ....+..  ...+.+++++++++++++.  ++.|.+||..+++........
T Consensus        26 ~l~~~d~~~~~i~~~d~~~~---------~~~~~~~--~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~   92 (297)
T 3g4e_A           26 SLLFVDIPAKKVCRWDSFTK---------QVQRVTM--DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD   92 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTC---------CEEEEEC--SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC
T ss_pred             EEEEEECCCCEEEEEECCCC---------cEEEEeC--CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC
Confidence            35556667888888886532         2344443  4679999999999966553  568999999877654332221


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN  272 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~  272 (326)
                      ...     ....+..+++.|  +++++++...           .+.|..+|.. + . +..+.........++|+|+++.
T Consensus        93 ~~~-----~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~-~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           93 NDK-----KNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPD-H-H-VKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             TTC-----SSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S-C-EEEEEEEESBEEEEEECTTSCE
T ss_pred             CCC-----CCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECC-C-C-EEEEeeccccccceEEcCCCCE
Confidence            110     113467888887  5655554422           2344444443 2 2 3333333345688999999987


Q ss_pred             EE-EEcCCCcEEEEEC--CCCeEE-----EEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          273 IY-IGNGSGDLASVDI--RTGKLL-----GCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       273 l~-~g~~dg~v~iwd~--~~~~~~-----~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      |+ +.+.++.|.+||+  .++++.     ..+..+ .+....+++++++.+.++...++
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTT
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCC
Confidence            75 5566789999997  455432     223333 45788999999998776654433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.91  E-value=1.1e-07  Score=86.39  Aligned_cols=61  Identities=11%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      +|.|..||+.++ +.+.++.... +.....+...+.++++|+.||.++.||.++++.+.+++.
T Consensus       437 ~g~l~A~D~~tG-~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQ-KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEeCCCC-cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            488999999988 5566665543 233334445688999999999999999999999988874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.90  E-value=4e-07  Score=83.30  Aligned_cols=223  Identities=9%  Similarity=0.033  Sum_probs=128.6

Q ss_pred             eeeCCCCCeEEEEec-----CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCC
Q 020454           59 IDDSQNDPLLAVARK-----NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (326)
Q Consensus        59 ~~~~~~~~~l~~g~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g  133 (326)
                      ..+++++++|+.+..     ..+|++||+.+++.+.....       .  ....++.|.         ++..|+.++.+.
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------~--~k~~~~~Ws---------Dg~~l~y~~~~~  195 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-------D--VKFSGISWL---------GNEGFFYSSYDK  195 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-------E--EESCCCEEE---------TTTEEEEEESSC
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-------C--ceeccEEEe---------CCCEEEEEEecC
Confidence            345677777875432     25799999999886543211       0  001233432         234566666553


Q ss_pred             -------------cEEEEEccccccccccccceEEEEEccC--CCceEEEEEcCCCCEEEEec----CCCeEEEEECCCc
Q 020454          134 -------------KASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGG----KGVEVNVWDLDKC  194 (326)
Q Consensus       134 -------------~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~----~d~~i~iwd~~~~  194 (326)
                                   .|++|++....      .....++....  ...+..+.++|++++|+...    .++.|.++|+.++
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~------~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQ------EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCG------GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             cccccccccCCCcEEEEEECCCCc------ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence                         37777765432      11233444322  33467899999999875432    2358999999876


Q ss_pred             e-eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---CeEEEEeCCCCCC-ceeEEeecCCceEEEEecCC
Q 020454          195 E-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPD  269 (326)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g~v~iwd~~~~~~-~~~~~~~~~~~i~~v~~s~~  269 (326)
                      . ....+....         ...... +.+. ++.+++....+   +.|..+|+.+... ....+..+...+.  .|+++
T Consensus       270 ~~~~~~l~~~~---------~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~  336 (693)
T 3iuj_A          270 NAPLLTVQGDL---------DADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG  336 (693)
T ss_dssp             TCCCEEEECSS---------SSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE
T ss_pred             CCceEEEeCCC---------CceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE
Confidence            3 222232221         112222 4453 34344555443   6899999986522 1245555555554  88899


Q ss_pred             CCeEEEEcC-CC--cEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          270 SFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       270 ~~~l~~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      +++|+.... ++  .|++||+..+ ....+.....+.+..+.++|++..|+..
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~  388 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFG  388 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred             CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEE
Confidence            988876554 44  6899998754 4444542215677888888877655443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.88  E-value=3e-06  Score=75.41  Aligned_cols=80  Identities=15%  Similarity=0.015  Sum_probs=52.3

Q ss_pred             CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce-EEEEEECCCC
Q 020454          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTL  313 (326)
Q Consensus       235 ~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~p~~  313 (326)
                      .+|.|..||+.++ +.+.++.... .+....+...+..++.++.||.|+.||.++++.+.+++.. ... -.-+.+..++
T Consensus       442 ~~g~l~a~D~~tG-~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~-~~~~~~p~~~~~~G  518 (571)
T 2ad6_A          442 EMGQIRAFDLTTG-KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP-SGGIGSPMTYSFKG  518 (571)
T ss_dssp             CCEEEEEECTTTC-CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETT
T ss_pred             CCCeEEEEECCCC-CEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC-CCcEeeeEEEEECC
Confidence            3588999999987 5566665432 2222223334678888999999999999999999888743 211 1123344566


Q ss_pred             CEEE
Q 020454          314 PIIA  317 (326)
Q Consensus       314 ~~l~  317 (326)
                      +.++
T Consensus       519 ~~yv  522 (571)
T 2ad6_A          519 KQYI  522 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.88  E-value=2.5e-06  Score=76.09  Aligned_cols=211  Identities=11%  Similarity=0.117  Sum_probs=114.4

Q ss_pred             eeeeeecC-cccEEEEEe-cCCcCCCcceeeeccCCCCCc-----e----EEEEEe--eeCCCCCeEEEEecCCcEEEEe
Q 020454           15 LRALTFDS-LGLIKVIEA-RGEHGGVPKVVERWGDPHSSN-----C----VLAASI--DDSQNDPLLAVARKNGLTDILN   81 (326)
Q Consensus        15 ~~l~~~~~-~G~i~vw~~-~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~--~~~~~~~~l~~g~~dg~i~i~~   81 (326)
                      -++.+++. +|.|.-+|. .++     +..-++.......     +    .-....  .+.....++++++.|+.|..+|
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG-----~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlD  137 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPG-----TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN  137 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCC-----cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEE
Confidence            45667777 788888888 666     3322222111100     0    001111  1111122488899999999999


Q ss_pred             ccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEEEccccccccccccceEE
Q 020454           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVK  155 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~~~~~~~~~~~~~~~~~~  155 (326)
                      ..+|+.+-........    ....+.+--..         .++.+++++.      +|.|+.+|....+          .
T Consensus       138 a~TG~~~W~~~~~~~~----~~~~~~ssP~v---------~~g~V~vg~~g~e~g~~g~v~A~D~~TG~----------~  194 (599)
T 1w6s_A          138 AETGETVWKVENSDIK----VGSTLTIAPYV---------VKDKVIIGSSGAELGVRGYLTAYDVKTGE----------Q  194 (599)
T ss_dssp             TTTCCEEEEEECCCGG----GTCBCCSCCEE---------ETTEEEECCBCGGGTCCCEEEEEETTTCC----------E
T ss_pred             CCCCCEEEeecCCCCC----ccceeecCCEE---------ECCEEEEEecccccCCCCeEEEEECCCCc----------E
Confidence            9999987665531100    00011110000         1345666553      6788877765432          1


Q ss_pred             EEEccCCCc--------------------------------------e-EEEEEcCCCCEEEEecCC-------------
Q 020454          156 SWNVCASGT--------------------------------------I-AFSKVDISEKFSLFGGKG-------------  183 (326)
Q Consensus       156 ~~~~~~~~~--------------------------------------v-~~~~~~~~~~~l~sg~~d-------------  183 (326)
                      +|+.....+                                      + ..+++.++..+++.+..+             
T Consensus       195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~  274 (599)
T 1w6s_A          195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN  274 (599)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCc
Confidence            232211111                                      1 134566677777776654             


Q ss_pred             ---CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          184 ---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       184 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                         +.|..+|.++++.++..+....+.+.+.......-+.. +..++   ..++.++.+|.++++|.+++ +++....
T Consensus       275 ~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~-~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~  350 (599)
T 1w6s_A          275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANK  350 (599)
T ss_dssp             TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred             cccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEec-cccCCcEEEEEEEECCCcEEEEEECCCC-CEeeccc
Confidence               38999999999999987765544332211111001111 10244   46777899999999999987 5555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.86  E-value=1.5e-07  Score=77.73  Aligned_cols=244  Identities=13%  Similarity=0.085  Sum_probs=140.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -++..++.+|.|..|| .++     +.  .|........+.  +.....++ .|.+++.+  |..||. +++....+.. 
T Consensus        31 g~l~v~t~~~~l~~~d-~~g-----~~--~~~~~~~~~~~~--~~~~~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~~-   95 (330)
T 3hxj_A           31 GTIYLGSSNKNLYAIN-TDG-----SV--KWFFKSGEIIEC--RPSIGKDG-TIYFGSDK--VYAINP-DGTEKWRFDT-   95 (330)
T ss_dssp             SCEECSSTTTTTEEEC-TTS-----CE--EESSCGGGEEEE--CCEETTTT-EECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred             CeEEEEcCCCEEEEEC-CCC-----cE--EEEEecCCCccc--ceEEecCC-cEEEecCc--EEEECC-CCcEEEEEEC-
Confidence            4677888888888898 655     33  232221111211  22222223 46666665  888886 5555443332 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccC-CCceEEEEEcCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDIS  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~  173 (326)
                             ..........          .++.+..++.++.+..++.. ..          ..|.... ...+.++...++
T Consensus        96 -------~~~~~~~~~~----------~~~~l~v~t~~~~l~~~d~~-g~----------~~~~~~~~~~~~~~~~~~~~  147 (330)
T 3hxj_A           96 -------KKAIVSDFTI----------FEDILYVTSMDGHLYAINTD-GT----------EKWRFKTKKAIYATPIVSED  147 (330)
T ss_dssp             ------------CCEEE----------ETTEEEEECTTSEEEEECTT-SC----------EEEEEECSSCCCSCCEECTT
T ss_pred             -------CCCcccCceE----------ECCEEEEEecCCEEEEEcCC-CC----------EEEEEcCCCceeeeeEEcCC
Confidence                   0111111221          24578888889988888754 11          1233221 223455566666


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +. |..++.++.|..+|.. ++..+......         ..+.++...+  ++ .+..++  +.|..|| .++ ..+..
T Consensus       148 g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~d~--~g-~l~v~t--~~l~~~d-~~g-~~~~~  209 (330)
T 3hxj_A          148 GT-IYVGSNDNYLYAINPD-GTEKWRFKTND---------AITSAASIGK--DG-TIYFGS--DKVYAIN-PDG-TEKWN  209 (330)
T ss_dssp             SC-EEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEECT--TC-CEEEES--SSEEEEC-TTS-CEEEE
T ss_pred             CE-EEEEcCCCEEEEECCC-CCEeEEEecCC---------CceeeeEEcC--CC-EEEEEe--CEEEEEC-CCC-cEEEE
Confidence            66 5567788999999998 77666554321         1233444433  44 455555  8899999 555 44555


Q ss_pred             EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      +......+.++...++| .|.+++.++.+..+|. +++.+..+... ...+.++.+.+++. |..++.+|
T Consensus       210 ~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~g~-l~v~t~~g  275 (330)
T 3hxj_A          210 FYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGNTDT-IYFGSYDG  275 (330)
T ss_dssp             ECCSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECTTSC-EEEECTTC
T ss_pred             EccCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcCCCe-EEEecCCC
Confidence            55555668888888777 4666777888888874 56666666543 44445566665664 44455553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.86  E-value=1.2e-05  Score=66.35  Aligned_cols=217  Identities=10%  Similarity=-0.036  Sum_probs=118.5

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~   96 (326)
                      +++....+.|..|+..++     +.. .+..+   ..+.++.+..+  +. ++++..+ .|.+||..++++...... ..
T Consensus        64 ~~~d~~~~~i~~~d~~~~-----~~~-~~~~~---~~v~~i~~~~d--g~-l~v~~~~-gl~~~d~~~g~~~~~~~~-~~  129 (326)
T 2ghs_A           64 WWFNILERELHELHLASG-----RKT-VHALP---FMGSALAKISD--SK-QLIASDD-GLFLRDTATGVLTLHAEL-ES  129 (326)
T ss_dssp             EEEEGGGTEEEEEETTTT-----EEE-EEECS---SCEEEEEEEET--TE-EEEEETT-EEEEEETTTCCEEEEECS-ST
T ss_pred             EEEECCCCEEEEEECCCC-----cEE-EEECC---CcceEEEEeCC--Ce-EEEEECC-CEEEEECCCCcEEEEeeC-CC
Confidence            444556677888887755     221 22222   23444444433  44 4445544 499999887775332221 00


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCceEEEEecC-----CcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                         ......+.++.+.+        ++ .++.++.+     +...+|.++ ..        .+..+. ........++++
T Consensus       130 ---~~~~~~~~~i~~d~--------~G-~l~v~~~~~~~~~~~~~l~~~~-~g--------~~~~~~-~~~~~~~~i~~s  187 (326)
T 2ghs_A          130 ---DLPGNRSNDGRMHP--------SG-ALWIGTMGRKAETGAGSIYHVA-KG--------KVTKLF-ADISIPNSICFS  187 (326)
T ss_dssp             ---TCTTEEEEEEEECT--------TS-CEEEEEEETTCCTTCEEEEEEE-TT--------EEEEEE-EEESSEEEEEEC
T ss_pred             ---CCCCCCCCCEEECC--------CC-CEEEEeCCCcCCCCceEEEEEe-CC--------cEEEee-CCCcccCCeEEc
Confidence               01112455555433        23 34444432     233455443 11        222211 112346789999


Q ss_pred             CCCCEEE-EecCCCeEEEEECC--Cc-eee--eeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454          172 ISEKFSL-FGGKGVEVNVWDLD--KC-EKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       172 ~~~~~l~-sg~~d~~i~iwd~~--~~-~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      |+++.|+ +...++.|.+||+.  ++ +..  ..+.....      ......++.+.+  +++++++...++.|..||..
T Consensus       188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~------~~~~p~gi~~d~--~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG------IKGGMDGSVCDA--EGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT------SSSEEEEEEECT--TSCEEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC------CCCCCCeeEECC--CCCEEEEEeCCCEEEEECCC
Confidence            9998664 44567899999986  44 211  01100000      012345677765  56677766667899999984


Q ss_pred             CCCCceeEEeecCCceEEEEec-CCCCeEEEEcCC
Q 020454          246 AQRRPVMSFDFRETPIKAVAEE-PDSFNIYIGNGS  279 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~v~~s-~~~~~l~~g~~d  279 (326)
                       + +.+..+..+...+++++|+ ++++.|++++..
T Consensus       260 -g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          260 -G-NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -C-CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -C-CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence             4 4566777676789999998 888877655443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.86  E-value=1.1e-05  Score=62.64  Aligned_cols=182  Identities=14%  Similarity=0.071  Sum_probs=114.9

Q ss_pred             CCeeeeecccccccccCCCCceE-EEEecC--CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454          104 DGIVGLHLFKRQREESSSRSRTL-LTCTTK--GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~--g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  180 (326)
                      .-..+|.+.          ++.| .+.+..  ..|+.+|+....        .++...+.....-..+++.. +++....
T Consensus        21 ~ftqGL~~~----------~~~LyestG~~g~S~v~~vD~~tgk--------v~~~~~l~~~~fgeGi~~~~-~~ly~lt   81 (243)
T 3mbr_X           21 AFTEGLFYL----------RGHLYESTGETGRSSVRKVDLETGR--------ILQRAEVPPPYFGAGIVAWR-DRLIQLT   81 (243)
T ss_dssp             CCEEEEEEE----------TTEEEEEECCTTSCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEE
T ss_pred             cccccEEEE----------CCEEEEECCCCCCceEEEEECCCCC--------EEEEEeCCCCcceeEEEEeC-CEEEEEE
Confidence            455677752          2344 444444  378888876544        34444443222223445542 3444555


Q ss_pred             cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC--
Q 020454          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--  258 (326)
Q Consensus       181 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--  258 (326)
                      -.++.+.+||..+.+.+.++.... .       .|  ++  .+  ++..|+.+..+++|.++|+.+. +.+.++....  
T Consensus        82 w~~~~v~v~D~~tl~~~~ti~~~~-~-------Gw--gl--t~--dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g  146 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTPRARFRYPG-E-------GW--AL--TS--DDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGG  146 (243)
T ss_dssp             SSSSEEEEEETTTTEEEEEEECSS-C-------CC--EE--EE--CSSCEEEECSSSEEEEECTTTC-CEEEEEECEETT
T ss_pred             eeCCEEEEEECCcCcEEEEEeCCC-C-------ce--EE--ee--CCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCC
Confidence            678999999999999888766532 1       11  33  33  3345666666899999999987 5566665432  


Q ss_pred             ---CceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce------------ecceEEEEEECCCCCEEEEec
Q 020454          259 ---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       259 ---~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~------------~~~~v~~l~~~p~~~~l~s~s  320 (326)
                         ..++.+.|. +|+..+..-.+..|.+.|.++++.+..+...            ...-.+.||++|+++.|+..|
T Consensus       147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence               345667765 6654444446789999999999999887621            013567999999776665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.85  E-value=4.7e-06  Score=65.31  Aligned_cols=172  Identities=13%  Similarity=0.037  Sum_probs=111.3

Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecC
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~  202 (326)
                      +..+++.+.+|.|+.+|++..+        .++.. +.....-..+++.. +++....-.++.+.+||..+.+.+.++..
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgk--------v~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQ--------PVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSS--------CSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCc--------EEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            3456777778898888876544        22222 32222223456653 34444556789999999999998887765


Q ss_pred             CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC-----CceEEEEecCCCCeEEEEc
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-----TPIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~i~~v~~s~~~~~l~~g~  277 (326)
                      .. ..+         +++  +  +++.|+.+..+++|.++|+.+. +.+.++....     ..++.+.|. +|+..+..-
T Consensus       135 ~~-eGw---------GLt--~--Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw  198 (268)
T 3nok_A          135 SG-EGW---------GLC--Y--WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIYANIW  198 (268)
T ss_dssp             SS-CCC---------CEE--E--ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CC-cee---------EEe--c--CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence            32 111         333  3  3446766667999999999987 5566665422     245667776 675444444


Q ss_pred             CCCcEEEEECCCCeEEEEEcce-e-----------cceEEEEEECCCCCEEEEec
Q 020454          278 GSGDLASVDIRTGKLLGCFIGK-C-----------SGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       278 ~dg~v~iwd~~~~~~~~~~~~~-~-----------~~~v~~l~~~p~~~~l~s~s  320 (326)
                      .++.|.+.|.++++.+..+... .           ..-.+.|||+|+++.|+..|
T Consensus       199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            6789999999999998887631 0           12568999999765554443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.81  E-value=3.8e-06  Score=74.94  Aligned_cols=81  Identities=19%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce-EEEEEECCCC
Q 020454          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTL  313 (326)
Q Consensus       235 ~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~p~~  313 (326)
                      .+|.|.-||+.++ +.+.+..... +...-.+...+..++.|+.||.++.||.++|+.+.+++.. .+. ..-+.+..++
T Consensus       451 ~~G~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~-~g~~~~P~~y~~~G  527 (599)
T 1w6s_A          451 GLGQIKAYNAITG-DYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP-SGAIGYPMTYTHKG  527 (599)
T ss_dssp             CCEEEEEECTTTC-CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETT
T ss_pred             CcCeEEEEECCCC-CEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC-CCcEeccEEEEeCC
Confidence            4578999999988 5566654331 2211112235778888999999999999999999888743 221 1224454566


Q ss_pred             C-EEEE
Q 020454          314 P-IIAS  318 (326)
Q Consensus       314 ~-~l~s  318 (326)
                      + |+++
T Consensus       528 ~qyv~~  533 (599)
T 1w6s_A          528 TQYVAI  533 (599)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            5 4444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.81  E-value=9e-06  Score=63.72  Aligned_cols=172  Identities=13%  Similarity=0.059  Sum_probs=108.7

Q ss_pred             ceEEEEecCC--cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeec
Q 020454          124 RTLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (326)
Q Consensus       124 ~~l~~~~~~g--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~  201 (326)
                      ..+.+.+.+|  .|+.+|+...+        .++...+.....-..++... +++....-.++.+.+||..+.+.+.++.
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tgk--------v~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~  124 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESGK--------TLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRSFN  124 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCCCceEEEEECCCCc--------EEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence            3455555555  78888876543        33444443222223355542 2334444578899999999999887766


Q ss_pred             CCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec--C---CceEEEEecCCCCeEEEE
Q 020454          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~---~~i~~v~~s~~~~~l~~g  276 (326)
                      ... ..           ..+.+  ++..|+....+++|.++|+.+. +.+.++...  .   ..++.+.|. +|+..+..
T Consensus       125 ~~~-eG-----------~glt~--dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          125 YDG-EG-----------WGLTH--NDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             CSS-CC-----------CCEEE--CSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             CCC-Cc-----------eEEec--CCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            532 11           12333  3446666666889999999987 556665542  1   234567776 67544444


Q ss_pred             cCCCcEEEEECCCCeEEEEEcce-e----------cceEEEEEECCCCCEEEEec
Q 020454          277 NGSGDLASVDIRTGKLLGCFIGK-C----------SGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       277 ~~dg~v~iwd~~~~~~~~~~~~~-~----------~~~v~~l~~~p~~~~l~s~s  320 (326)
                      -.++.|.+.|.++++.+..+... .          ....+.|||+|+++.|+..|
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            46889999999999998887631 0          12457999999877666655

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.80  E-value=3e-06  Score=74.14  Aligned_cols=229  Identities=11%  Similarity=0.004  Sum_probs=142.7

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCC---------------------------------CCCeeeeecccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE---------------------------------DDGIVGLHLFKR  114 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~i~~l~~~~~  114 (326)
                      +.+|+..|.|+|+-+.+++.+..+..+.+.+.++-                                 +..-..+...+.
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            67889999999999988888777766554432210                                 000011111000


Q ss_pred             cccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE-c-CCCCEEEEec----------
Q 020454          115 QREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-D-ISEKFSLFGG----------  181 (326)
Q Consensus       115 ~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~sg~----------  181 (326)
                      .     .++.++++.. .++.|.+.|++..+        ..++..+........+++ + |+++++++++          
T Consensus        98 ~-----~DG~~lfVnd~~~~rVavIdl~t~~--------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg  164 (595)
T 1fwx_A           98 K-----YDGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  164 (595)
T ss_dssp             E-----EEEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             C-----cCCCEEEEEcCCCCEEEEEECCCce--------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence            0     0233444433 34567778876544        555556666677888887 5 8999888874          


Q ss_pred             --------CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC----------------
Q 020454          182 --------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----------------  237 (326)
Q Consensus       182 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg----------------  237 (326)
                              .++.+.+.|..+.+..+++.-.. +         ...++++|  +++++++.+.+.                
T Consensus       165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~---------pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~  232 (595)
T 1fwx_A          165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG-N---------LDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDH  232 (595)
T ss_dssp             SSTTCGGGEEEEEEEEETTTTEEEEEEEESS-C---------CCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             cccccccccCceEEEEECCCCeEEEEEEeCC-C---------ccceEECC--CCCEEEEEecCcccCcchhhccccccce
Confidence                    34679999999988887755211 1         11334555  344555555332                


Q ss_pred             ----------------------eEEEEeCCC--CCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCe-
Q 020454          238 ----------------------QVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK-  291 (326)
Q Consensus       238 ----------------------~v~iwd~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~-  291 (326)
                                            .|.+.|.++  ....+..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ 
T Consensus       233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~  311 (595)
T 1fwx_A          233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA  311 (595)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence                                  478888886  322245555543 446789999999888555 67899999999653 


Q ss_pred             -----------EEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          292 -----------LLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       292 -----------~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                                 .......  ....+.++|+|+|....+.-.|+.
T Consensus       312 ~~~~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          312 VFYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             HHHSCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTE
T ss_pred             ccccccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCc
Confidence                       3333432  446889999999944445555544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.71  E-value=5e-06  Score=67.93  Aligned_cols=172  Identities=12%  Similarity=0.038  Sum_probs=107.3

Q ss_pred             eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCC
Q 020454          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (326)
Q Consensus       125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~  204 (326)
                      .+++...++.|..|+...          .+..+.. ....+..+.++++++++++...++.|.+||.. ++.........
T Consensus        59 l~~~d~~~~~i~~~~~~g----------~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~  126 (305)
T 3dr2_A           59 LVWSDLVGRRVLGWREDG----------TVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA  126 (305)
T ss_dssp             EEEEETTTTEEEEEETTS----------CEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred             EEEEECCCCEEEEEeCCC----------CEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence            566777788888887421          2333432 34568899999999988776667899999986 44322111110


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEE----EeC-------------CCeEEEEeCCCCCCceeEEeecCCceEEEEec
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GTN-------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~----~~~-------------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s  267 (326)
                      ..     ....+..+++.|  +++++++    ++.             .+.|..||..++ + +..+. .......++|+
T Consensus       127 ~~-----~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~-~~~~~-~~~~p~gl~~s  196 (305)
T 3dr2_A          127 GK-----RLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P-LQRMA-DLDHPNGLAFS  196 (305)
T ss_dssp             TE-----ECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C-CEEEE-EESSEEEEEEC
T ss_pred             CC-----ccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c-EEEEe-cCCCCcceEEc
Confidence            00     012356778887  5667765    432             356888887655 3 22222 33456789999


Q ss_pred             CCCCeEEEEcCC------CcEEEEECCCCeEE--EEE-cceecceEEEEEECCCCCEEEEe
Q 020454          268 PDSFNIYIGNGS------GDLASVDIRTGKLL--GCF-IGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       268 ~~~~~l~~g~~d------g~v~iwd~~~~~~~--~~~-~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      |+++.|+.+...      +.|.+|++..+.+.  ..+ ... .+....+++++++.+.++.
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-~~~pdgi~~d~~G~lwv~~  256 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-DGLPDGFCVDRGGWLWSSS  256 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-SSCCCSEEECTTSCEEECC
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-CCCCCeEEECCCCCEEEec
Confidence            999988877665      68999998865421  111 111 3345678888888855443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.70  E-value=1.5e-05  Score=67.51  Aligned_cols=234  Identities=12%  Similarity=0.083  Sum_probs=128.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccC-----C-CCCceEEEEEeeeCCCCCeEEEEecC------CcEEEEec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-----P-HSSNCVLAASIDDSQNDPLLAVARKN------GLTDILNP   82 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~g~~d------g~i~i~~~   82 (326)
                      ..++.+-.++.|.|+|+.+. ...+++......     + ....- ..+..  .+++ +++++..+      |.|.++|.
T Consensus        97 ~l~v~~l~s~~I~viD~~t~-p~~p~~~k~ie~~~~~~~~g~s~P-h~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPN-PREPKIIKVIEPEEVKKVSGYSRL-HTVHC--GPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSC-TTSCEEEEEECHHHHHHHHCEEEE-EEEEE--CSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             EEEEccCCCCeEEEEECCCC-CCCceeeeeechhhcccccCCCcc-cceeE--CCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            55777888899999998754 222334433310     0 00000 00111  1223 55555555      78999999


Q ss_pred             cccceeeeecccCCCCCCCCCCC-eeeeecccccccccCCCCceEEEEe-------------------cCCcEEEEEccc
Q 020454           83 LNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCT-------------------TKGKASMRSIEV  142 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~~~l~~~~-------------------~~g~v~i~~~~~  142 (326)
                      .+.+.+..+..-      .+... -..+.+.+        ..+.+++..                   ....|.+||++.
T Consensus       172 ~T~~v~~~~~~~------~~~~~~~Yd~~~~p--------~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          172 YSFEPLGKWEID------RGDQYLAYDFWWNL--------PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             TTCCEEEECCSB------CTTCCCCCCEEEET--------TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             CCCeEEEEEccC------CCCccccceEEECC--------CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence            999988877631      11111 11122222        334555552                   378999999875


Q ss_pred             cccccccccceEEEEEcc-CCCceEEEEE--cCCCCEEEEec------CCCeEEEEECCCcee--eee--ecCCCCC-CC
Q 020454          143 TKVSAESSCSTVKSWNVC-ASGTIAFSKV--DISEKFSLFGG------KGVEVNVWDLDKCEK--IWT--AKPPPKN-SL  208 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~l~sg~------~d~~i~iwd~~~~~~--~~~--~~~~~~~-~~  208 (326)
                      ..        .+..+.+. .......+.|  +|+++++.++.      .+++|.+|....++.  ...  +...... .+
T Consensus       238 ~k--------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          238 RK--------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             TE--------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred             Cc--------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence            32        34445553 1223445555  99998887766      456888776654321  111  1110000 00


Q ss_pred             C-cC-----CCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCCCC--ceeEEeecCC--------------ceEEEE
Q 020454          209 G-IF-----TPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRR--PVMSFDFRET--------------PIKAVA  265 (326)
Q Consensus       209 ~-~~-----~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~~~--~~~~~~~~~~--------------~i~~v~  265 (326)
                      . +.     .......+.++|  ++++|.++ -..+.|.+||+.....  .+..+.....              .-..++
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~  387 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE  387 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECT--TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred             cccccccccCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence            0 00     023467888888  45555544 5578999999863322  2333333211              247789


Q ss_pred             ecCCCCeEEEEc
Q 020454          266 EEPDSFNIYIGN  277 (326)
Q Consensus       266 ~s~~~~~l~~g~  277 (326)
                      ++|||++|+++.
T Consensus       388 lSpDGk~LyVaN  399 (462)
T 2ece_A          388 ISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSSEEEEEC
T ss_pred             EcCCCCEEEEEc
Confidence            999999999888

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=3.2e-05  Score=68.93  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec--CCC---cEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (326)
Q Consensus       184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  258 (326)
                      +.|..+|..+++.++..+....+.+.....   ....+...  .++   ..++.++.+|.++++|..++ +.+..+....
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~---~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~  366 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGN---NELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNAFPFVD  366 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCC---CCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCC---CCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC-CEeccccccc
Confidence            589999999999999876543332222111   11111110  244   37888999999999999887 4555544321


Q ss_pred             -------------Cc--------------------------------eEEEEecCCCCeEEEEc----------------
Q 020454          259 -------------TP--------------------------------IKAVAEEPDSFNIYIGN----------------  277 (326)
Q Consensus       259 -------------~~--------------------------------i~~v~~s~~~~~l~~g~----------------  277 (326)
                                   .+                                -..++++|+...+++..                
T Consensus       367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  446 (582)
T 1flg_A          367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK  446 (582)
T ss_dssp             CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred             CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence                         00                                01346677655555432                


Q ss_pred             -----------------CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          278 -----------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       278 -----------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                                       .+|.|..||+.+++.+.+++.  ..++..-.....+.+++.++.||..
T Consensus       447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~g~~dg~l  509 (582)
T 1flg_A          447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--HLPLWAGVLATAGNLVFTGTGDGYF  509 (582)
T ss_dssp             TSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--SSCCCSCCEEETTTEEEEECTTSEE
T ss_pred             CCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC--CCCCcccceEeCCCEEEEECCCCcE
Confidence                             368899999999999877663  2233222222245677778888753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.68  E-value=6.6e-06  Score=73.36  Aligned_cols=79  Identities=20%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE--EEEECCCC
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR--SIARHPTL  313 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~~p~~  313 (326)
                      +|.|.-||+.++ +.+.+..... ++..-.....+..++.|+.||.++.||.++|+.+.+++.. . .+.  -+.|..++
T Consensus       465 ~G~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~-~-g~~a~P~~y~~~G  540 (582)
T 1flg_A          465 VGSLRAMDPVSG-KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG-S-GIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTC-CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-S-CCCSCCEEEEETT
T ss_pred             cceEEEEECCCC-CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC-C-CcccCceEEEECC
Confidence            688999999988 5566665432 2221112224678888999999999999999999988753 2 232  25565676


Q ss_pred             C-EEEE
Q 020454          314 P-IIAS  318 (326)
Q Consensus       314 ~-~l~s  318 (326)
                      + |+++
T Consensus       541 ~qYv~~  546 (582)
T 1flg_A          541 EQYLGV  546 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            5 4443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.68  E-value=1.1e-06  Score=76.82  Aligned_cols=272  Identities=11%  Similarity=0.057  Sum_probs=156.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcc--------------------ee-------------------eeccCCCCCceEE
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPK--------------------VV-------------------ERWGDPHSSNCVL   55 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~--------------------~~-------------------~~~~~~~~~~~~~   55 (326)
                      +-+.+|+..|.++|+-+.+. .+...                    +.                   ..|++..+    .
T Consensus        16 ~~f~s~g~~g~~~v~g~ps~-r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh----~   90 (595)
T 1fwx_A           16 YGFWSSGQSGEMRILGIPSM-RELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH----V   90 (595)
T ss_dssp             EEEECCBTTCEEEEEEETTC-CEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC----E
T ss_pred             EEEeeCCcCceEEEEecCCc-ceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCc----c
Confidence            77899999999999988765 11110                    00                   11222211    3


Q ss_pred             EEEeee-CCCCCeEEEEec-CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecc--cccccccCCCCceEEEEec
Q 020454           56 AASIDD-SQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLF--KRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        56 ~~~~~~-~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~~~l~~~~~  131 (326)
                      ++++.+ ..+++++++... ++.|.+.|+.+.+....+..       .....+.++.+.  +        +.++++++++
T Consensus        91 ~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p--------~~~~v~~~~~  155 (595)
T 1fwx_A           91 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWP--------RSNYVFCNGE  155 (595)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSS--------BCSEEEEEEC
T ss_pred             ccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecC--------CCcEEEEecc
Confidence            455522 223445666554 56799999999887775542       111235556542  3        4567777642


Q ss_pred             ------------------CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC---------
Q 020454          132 ------------------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---------  184 (326)
Q Consensus       132 ------------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~---------  184 (326)
                                        ++.+.+.|.+..          -..|++.-++....++++|+++++++.+.+.         
T Consensus       156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~----------~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~  225 (595)
T 1fwx_A          156 DETPLVNDGTNMEDVANYVNVFTAVDADKW----------EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM  225 (595)
T ss_dssp             SCEESSCSSSSTTCGGGEEEEEEEEETTTT----------EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             cccccCCCCcccccccccCceEEEEECCCC----------eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhc
Confidence                              234555554321          2234433233456688999999888877553         


Q ss_pred             ------eEEEEECCCc-------ee-----eeeecCCC--CCC--CCcCCCCceeeeEEeecCCCcEEEE-EeCCCeEEE
Q 020454          185 ------EVNVWDLDKC-------EK-----IWTAKPPP--KNS--LGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRL  241 (326)
Q Consensus       185 ------~i~iwd~~~~-------~~-----~~~~~~~~--~~~--~~~~~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~i  241 (326)
                            .|.++|....       +.     +..+....  ...  ..+..+....++.++|  ||+++++ +-.+.+|.+
T Consensus       226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sP--DGk~v~V~~~~s~~VsV  303 (595)
T 1fwx_A          226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP--DKKHLCVAGKLSPTVTV  303 (595)
T ss_dssp             TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECT--TSSEEEEECTTSSBEEE
T ss_pred             cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcC--CCCEEEEeCCCCCeEEE
Confidence                  3555554321       10     11111111  000  0122233456788888  5665554 457889999


Q ss_pred             EeCCCCC-----------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC----------CeEEEEEccee
Q 020454          242 YDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------GKLLGCFIGKC  300 (326)
Q Consensus       242 wd~~~~~-----------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----------~~~~~~~~~~~  300 (326)
                      +|+.+.+           ..+.+.... .....++|+|+|...++.-.|+.|.+||+.+          .+.+.++..| 
T Consensus       304 id~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-  381 (595)
T 1fwx_A          304 LDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-  381 (595)
T ss_dssp             EEGGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-
T ss_pred             EECcccccccccccCcccceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-
Confidence            9998541           122333333 3457789999994334667899999999987          5677777765 


Q ss_pred             cceE-----EEEEECCCCCEEEEec
Q 020454          301 SGSI-----RSIARHPTLPIIASCG  320 (326)
Q Consensus       301 ~~~v-----~~l~~~p~~~~l~s~s  320 (326)
                      ..+-     ..+.++|||++|++..
T Consensus       382 yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          382 YQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             SCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cccccceeccceEeCCCCCEEEEcC
Confidence            4332     2235679999998873

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.65  E-value=7e-06  Score=65.01  Aligned_cols=151  Identities=12%  Similarity=0.008  Sum_probs=100.7

Q ss_pred             eEEEEEccCCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l  230 (326)
                      .+..+..........+.+++++.+.++.+.  ++.|+++|+.+++.+..+.-...        .....+++.   ++.+.
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------~fgeGi~~~---g~~ly   79 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------YFGEGLTLL---NEKLY   79 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------CCEEEEEEE---TTEEE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------cceEEEEEe---CCEEE
Confidence            444555433344689999998765555443  67999999999998777542110        112244444   33456


Q ss_pred             EEEeCCCeEEEEeCCCCCCceeEEeec-CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee----cceEE
Q 020454          231 VAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIR  305 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~  305 (326)
                      ++...++.+.++|..+. +.+.++... ...   ..+++||+.++++..++.|.++|..+.+.+..+.-..    ....+
T Consensus        80 v~t~~~~~v~viD~~t~-~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           80 QVVWLKNIGFIYDRRTL-SNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             EEETTCSEEEEEETTTT-EEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEecCCEEEEEECCCC-cEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            66677899999999977 557777644 222   3455688888888888999999999998888776320    12366


Q ss_pred             EEEECCCCCEEEEe
Q 020454          306 SIARHPTLPIIASC  319 (326)
Q Consensus       306 ~l~~~p~~~~l~s~  319 (326)
                      .+.|. ++.+.+..
T Consensus       156 ele~~-dg~lyvn~  168 (266)
T 2iwa_A          156 ELEYI-NGEVWANI  168 (266)
T ss_dssp             EEEEE-TTEEEEEE
T ss_pred             eEEEE-CCEEEEec
Confidence            88887 66544444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=4.6e-06  Score=69.40  Aligned_cols=155  Identities=13%  Similarity=0.029  Sum_probs=98.8

Q ss_pred             CceEEEEEcCCCCEEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----
Q 020454          163 GTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----  235 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----  235 (326)
                      .....++++++++++++..  .++.++||.+.+++.. .+......  .-.+...+.++++.+  +++++++-..     
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~--~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGN--AIITFDTVLGIKSDG--NGIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSS--CCCCCSCEEEEEECS--SSEEEEEECHHHHTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccC--cccceeEeeEEEEcC--CCcEEEEcCCCCcCC
Confidence            4788999999999988853  2342555555444422 22111100  001225688999987  4555555443     


Q ss_pred             CCeEEEEeCCCCCCceeEEeec------CCceEEEEecCCCCeEE-EEc---CCCcEEEEECCCCeEEEEEccee-----
Q 020454          236 DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIY-IGN---GSGDLASVDIRTGKLLGCFIGKC-----  300 (326)
Q Consensus       236 dg~v~iwd~~~~~~~~~~~~~~------~~~i~~v~~s~~~~~l~-~g~---~dg~v~iwd~~~~~~~~~~~~~~-----  300 (326)
                      ++.|.+||+.++ +.+..+...      ...+..+++++++..++ +..   .++.|.+||+.+++....+.+|.     
T Consensus        92 ~~~i~~~d~~tg-~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           92 VPKLVAWDTLNN-QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             CCEEEEEETTTT-EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCeEEEEECCCC-eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence            579999999876 445555432      23568899998755655 444   57899999999887665543310     


Q ss_pred             -----------------------cceEEEEEECCCCCEEEEeccCc
Q 020454          301 -----------------------SGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       301 -----------------------~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                                             ...+..|+|+|+++.|+.+..++
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence                                   02368899999999888876554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.58  E-value=0.00016  Score=58.98  Aligned_cols=225  Identities=8%  Similarity=-0.044  Sum_probs=120.3

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCc--EEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGK--ASMR  138 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~--v~i~  138 (326)
                      +.++.++++...++.|..||... +....+..         ...+.++++.+        ++. ++++.. ...  +..+
T Consensus        40 ~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---------~~~p~gia~~~--------dG~-l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           40 APDGTIFVTNHEVGEIVSITPDG-NQQIHATV---------EGKVSGLAFTS--------NGD-LVATGWNADSIPVVSL  100 (306)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---------SSEEEEEEECT--------TSC-EEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---------CCCceeEEEcC--------CCc-EEEEeccCCcceEEEE
Confidence            33455566666789999999854 43333221         13466676533        333 444442 223  4444


Q ss_pred             EccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCce-eeeeecCC-C--CCCCCcCCCC
Q 020454          139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPP-P--KNSLGIFTPT  214 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~-~--~~~~~~~~~~  214 (326)
                      +.....        ...+...........+...+.+..+++-..++.|..+|..+++ .+...... .  ...-.+   .
T Consensus       101 d~~~g~--------~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~  169 (306)
T 2p4o_A          101 VKSDGT--------VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---P  169 (306)
T ss_dssp             ECTTSC--------EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---C
T ss_pred             cCCCCe--------EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---C
Confidence            432211        1122222222233445555555555555568899999987643 12211110 0  000011   1


Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                      ....+  +|. .+.++++-+..+.|..||+.....  ....+... .....++++++|++.++-...+.|.++|.. ++.
T Consensus       170 ~pngi--s~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          170 AANGL--KRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             SEEEE--EEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred             cCCCc--CcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence            23444  553 334556667788999999874111  11222111 345678999999876666667899999975 655


Q ss_pred             EE--EEcceecceEEEEEEC---CCCCEEEEeccC
Q 020454          293 LG--CFIGKCSGSIRSIARH---PTLPIIASCGFL  322 (326)
Q Consensus       293 ~~--~~~~~~~~~v~~l~~~---p~~~~l~s~s~D  322 (326)
                      ..  .+... ....++++|.   |++..|+.+...
T Consensus       245 ~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          245 TIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence            33  23322 3468899998   887766655543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.57  E-value=0.00015  Score=57.86  Aligned_cols=210  Identities=10%  Similarity=0.014  Sum_probs=121.0

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~  144 (326)
                      .++++...++.|..++...+.....+.        .......++++.+        ..+.+ ++-...+.|.+++++...
T Consensus        49 ~ly~~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~p~~ia~d~--------~~~~lyv~d~~~~~I~~~~~~g~~  112 (267)
T 1npe_A           49 VVYWTDISEPSIGRASLHGGEPTTIIR--------QDLGSPEGIALDH--------LGRTIFWTDSQLDRIEVAKMDGTQ  112 (267)
T ss_dssp             EEEEEETTTTEEEEEESSSCCCEEEEC--------TTCCCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEEEECCCCEEEEEecCCCCcEEEEE--------CCCCCccEEEEEe--------cCCeEEEEECCCCEEEEEEcCCCC
Confidence            345555567899999986544322221        1113456666533        23344 444556788888765321


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC---CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                               .+..-.........++++|++..|+.+..   .+.|..+++..... ..+...     .+   .....+++
T Consensus       113 ---------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~-----~~---~~P~gia~  174 (267)
T 1npe_A          113 ---------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD-----NL---GLPNGLTF  174 (267)
T ss_dssp             ---------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT-----TC---SCEEEEEE
T ss_pred             ---------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEEC-----CC---CCCcEEEE
Confidence                     11111112245789999997655444433   46888888764322 111110     01   34678899


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEccee
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC  300 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~  300 (326)
                      .|. .+.++++-...+.|..+|+... .....+.. ......++..  +..|+.+. ..+.|..+|..+++.+..+....
T Consensus       175 d~~-~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~  249 (267)
T 1npe_A          175 DAF-SSQLCWVDAGTHRAECLNPAQP-GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK  249 (267)
T ss_dssp             ETT-TTEEEEEETTTTEEEEEETTEE-EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred             cCC-CCEEEEEECCCCEEEEEecCCC-ceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc
Confidence            874 3445666677889999998753 22222222 2334566654  45555444 56899999999999998886431


Q ss_pred             cceEEEEEECCCCC
Q 020454          301 SGSIRSIARHPTLP  314 (326)
Q Consensus       301 ~~~v~~l~~~p~~~  314 (326)
                      ......|++.|++-
T Consensus       250 ~~~p~gi~~~~~~~  263 (267)
T 1npe_A          250 QTRLYGITIALSQC  263 (267)
T ss_dssp             CCCCCCEEEECSCC
T ss_pred             ccccceeeecCccC
Confidence            22467788887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.56  E-value=8.1e-05  Score=58.34  Aligned_cols=177  Identities=11%  Similarity=0.095  Sum_probs=108.5

Q ss_pred             CeEEEEecCC--cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           66 PLLAVARKNG--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        66 ~~l~~g~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      .+..+.+.+|  .|+++|+.+++.+..+..       ...---.++....         +...++.-.++.+.++|.+..
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------~~~~FgeGit~~g---------~~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESGKTLQQIEL-------GKRYFGEGISDWK---------DKIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEEEC-------CTTCCEEEEEEET---------TEEEEEESSSSEEEEEETTTC
T ss_pred             EEEEECCCCCCceEEEEECCCCcEEEEEec-------CCccceeEEEEeC---------CEEEEEEeeCCEEEEEECccC
Confidence            4555555655  899999999999887764       1111123345422         233444446888999997654


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      .        .+..+.....+  ..++  ++++.|+.+..++.|.++|..+.+.+..+.-.....    ....++.+.|. 
T Consensus       118 ~--------~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~----~~~~lNELe~~-  180 (262)
T 3nol_A          118 R--------QVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE----ELPELNELEWV-  180 (262)
T ss_dssp             C--------EEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE----ECCCEEEEEEE-
T ss_pred             c--------EEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc----cccccceeEEE-
Confidence            4        34444443211  2233  456666555557889999999887766644321000    00223445665 


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec------------CCceEEEEecCCCCeEEEEcC
Q 020454          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------------ETPIKAVAEEPDSFNIYIGNG  278 (326)
Q Consensus       224 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------~~~i~~v~~s~~~~~l~~g~~  278 (326)
                        ++++++..-.+..|.+.|++++ +.+..+...            ..-.+.|||+|+++.|++.+.
T Consensus       181 --~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 --DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             --TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             --CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence              5656666667889999999987 555666542            134688999999877776554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.53  E-value=0.00063  Score=63.24  Aligned_cols=223  Identities=16%  Similarity=0.149  Sum_probs=134.3

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      .|.+|+.++-|.+||..++++....... ..+.......|.++...         .++.+..++.+ .+.+++....   
T Consensus       227 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d---------~~g~lWigt~~-Gl~~~~~~~~---  292 (795)
T 4a2l_A          227 RIWVATEGAGLFLINPKTKEIKNYLHSP-SNPKSISSNYIRSLAMD---------SQNRLWIGTFN-DLNIYHEGTD---  292 (795)
T ss_dssp             EEEEEEBSSCEEEEETTTTEEEEECCCT-TCTTSCSCSBEEEEEEC---------TTSCEEEEESS-CEEEEETTTT---
T ss_pred             CEEEEECCCCeEEEeCCCCeEEEeecCC-CCccccCCCeEEEEEEc---------CCCCEEEEeCC-hhheEcCCCC---
Confidence            3777776656889998766553322110 00001123557766542         24567777776 5788875432   


Q ss_pred             cccccceEEEEEcc-------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          147 AESSCSTVKSWNVC-------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       147 ~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                            .+..+...       ....|.++..+++|++ ..|+.++-|..|+..+.............  .+ ....|.++
T Consensus       293 ------~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~--~l-~~~~V~~i  362 (795)
T 4a2l_A          293 ------SFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKN--SL-SDNVVSCI  362 (795)
T ss_dssp             ------EEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSS--SC-SCSSEEEE
T ss_pred             ------eEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCC--CC-CCCeeEEE
Confidence                  22222211       1346999999988774 45777788999987655432211111111  11 22357777


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe---------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      ...+  ++ .|..|+.++-|..||..+. . ...+.         .....|.+++..++++.|.+|+.++-|..||..++
T Consensus       363 ~~d~--~g-~lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          363 VEDK--DK-NLWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EECT--TS-CEEEEESSSCEEEECTTTC-C-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             EECC--CC-CEEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            6654  44 5677888878999998754 2 33332         12357889988888876778888778999999887


Q ss_pred             eEEEEEc----ceecceEEEEEECCCCCEEEEe
Q 020454          291 KLLGCFI----GKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       291 ~~~~~~~----~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      +...-..    .+ ...|.++...+++.+.+..
T Consensus       438 ~~~~~~~~~~~l~-~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          438 QVENFNQRNSQLV-NENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             CEEEECTTTSCCS-CSCEEEEEECSSSCEEEEE
T ss_pred             cEEEeecCCCCcC-CCeeEEEEECCCCCEEEEe
Confidence            6543211    12 4579999998888765544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.49  E-value=0.00015  Score=57.02  Aligned_cols=208  Identities=10%  Similarity=0.084  Sum_probs=123.9

Q ss_pred             ceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      ..+..+.++.. .+.++++...++.|..+|.. ++++..+..       .+..-.-++++..        ++.++++.-.
T Consensus        27 ~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------~g~~D~EGIa~~~--------~g~~~vs~E~   89 (255)
T 3qqz_A           27 NNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------DFVKDLETIEYIG--------DNQFVISDER   89 (255)
T ss_dssp             SCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEEC-------SSCSSEEEEEECS--------TTEEEEEETT
T ss_pred             cCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEec-------CCCCChHHeEEeC--------CCEEEEEECC
Confidence            34666777644 34466668888999999996 887777654       2223456666543        3344455556


Q ss_pred             CCcEEEEEccccccccccccceEEEEEc-----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC---ceeeeeecCC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---CEKIWTAKPP  203 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---~~~~~~~~~~  203 (326)
                      ++.+.++++......     ..+.....     ........++++|.++.|.++.......||.+..   ...+......
T Consensus        90 ~~~l~~~~v~~~~~i-----~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           90 DYAIYVISLTPNSEV-----KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             TTEEEEEEECTTCCE-----EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             CCcEEEEEcCCCCee-----eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence            678888887653310     01222221     2244579999999987666666555555555531   1111111100


Q ss_pred             C-CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC---------CceEEEEecCCCCeE
Q 020454          204 P-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAEEPDSFNI  273 (326)
Q Consensus       204 ~-~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~i~~v~~s~~~~~l  273 (326)
                      . ....   ......++++.|. .+++++.....+.+..+|.. + +++..+....         ..--.|+|.++|+ |
T Consensus       165 ~~~~~~---~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~-g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-l  237 (255)
T 3qqz_A          165 ALQRQF---TLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLV-G-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-I  237 (255)
T ss_dssp             HHHHTC---CSSCCCEEEEETT-TTEEEEEETTTTEEEEECTT-C-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-E
T ss_pred             hhcccc---ccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCC-C-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-E
Confidence            0 0000   1124679999996 56677888888999999977 3 3455544332         2668999999997 5


Q ss_pred             EEEcCCCcEEEEECC
Q 020454          274 YIGNGSGDLASVDIR  288 (326)
Q Consensus       274 ~~g~~dg~v~iwd~~  288 (326)
                      +..++-+.++.|.-.
T Consensus       238 yIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          238 YIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEEETTTEEEEEEC-
T ss_pred             EEEcCCceEEEEEec
Confidence            544777777777543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.47  E-value=0.0001  Score=57.80  Aligned_cols=176  Identities=11%  Similarity=-0.033  Sum_probs=110.5

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +.+..+.+.+|.|+++|+++++.+..+ .       ...---.++....         +...++.-.++.+.++|.+...
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------~~~~FgeGit~~g---------~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWME-R-------LGNIFAEGLASDG---------ERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEE-E-------CTTCCEEEEEECS---------SCEEEEESSSCEEEEEETTTTE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEE-C-------CCCcceeEEEEeC---------CEEEEEEccCCEEEEEECCcCc
Confidence            345666777789999999999998877 3       1111123355422         3344555568899999976544


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                              .++.+.....  -..++  ++++.|+.+..++.|.++|..+.+.+..+.-.....    .-..++.+.|.  
T Consensus       128 --------~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~----~v~~lNeLe~~--  189 (268)
T 3nok_A          128 --------RERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ----PVELINELECA--  189 (268)
T ss_dssp             --------EEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE----ECCCEEEEEEE--
T ss_pred             --------EEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc----ccccccccEEe--
Confidence                    3444444322  12333  456666666668899999999988766654321100    00234556665  


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec-------------CCceEEEEecCCCCeEEEEc
Q 020454          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------------ETPIKAVAEEPDSFNIYIGN  277 (326)
Q Consensus       225 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------~~~i~~v~~s~~~~~l~~g~  277 (326)
                       ++++++....+..|.+.|++++ +.+..+...             ..-.+.|||+|+++.|++.+
T Consensus       190 -dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          190 -NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             -TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             -CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence             5656666667889999999987 555555532             13568999999876665433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.44  E-value=0.00021  Score=58.66  Aligned_cols=223  Identities=11%  Similarity=-0.027  Sum_probs=125.2

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCC----C--------CCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA----Q--------PEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~----~--------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      ..+.+++++..++.|..|+..++++. .+........    .        .....+.++++.+        .++.|+++.
T Consensus        28 ~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--------~~g~l~v~d   98 (322)
T 2fp8_A           28 STNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--------QNNQLYIVD   98 (322)
T ss_dssp             TTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--------TTTEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--------CCCcEEEEE
Confidence            34556888889999999998665542 2221000000    0        0002355666432        245677776


Q ss_pred             cCCcEEEEEccccccccccccceEEEEEc----cCCCceEEEEEcC-CCCEEEEecC-----------------CCeEEE
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDI-SEKFSLFGGK-----------------GVEVNV  188 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~sg~~-----------------d~~i~i  188 (326)
                      ..+.+..++....         .++.+..    ........+++.+ ++++.++-..                 ++.|..
T Consensus        99 ~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           99 CYYHLSVVGSEGG---------HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TTTEEEEECTTCE---------ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CCCCEEEEeCCCC---------EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            6666666664321         1111111    0113467899999 8887665432                 367888


Q ss_pred             EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCC-CceeEEeecCCceEEEEe
Q 020454          189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAE  266 (326)
Q Consensus       189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~  266 (326)
                      ||..+++.......       +   .....++++|  +++.| ++-+..+.|..|++.... .....+..... ...+++
T Consensus       170 ~d~~~~~~~~~~~~-------~---~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~  236 (322)
T 2fp8_A          170 YDPSTKETTLLLKE-------L---HVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR  236 (322)
T ss_dssp             EETTTTEEEEEEEE-------E---SCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred             EeCCCCEEEEeccC-------C---ccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence            88876654322111       1   1234678887  45444 454667899999987431 11222222223 678999


Q ss_pred             cCCCCeEEEEcC----------CCcEEEEECCCCeEEEEEcceec----ceEEEEEECCCCCEEEEe
Q 020454          267 EPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCS----GSIRSIARHPTLPIIASC  319 (326)
Q Consensus       267 s~~~~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~----~~v~~l~~~p~~~~l~s~  319 (326)
                      +++|++.++...          .+.|..+|. .++.+..+... .    ..+.++++ .++.+.++.
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~-~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP-PPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC-TTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC-CCCccccceEEEE-eCCEEEEee
Confidence            999986665444          467888987 47777777643 2    24666766 355544443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.39  E-value=3.2e-05  Score=70.69  Aligned_cols=143  Identities=12%  Similarity=0.130  Sum_probs=90.1

Q ss_pred             EEEEEcCCCCEEEEecCCC-------------eEEEEECCCce----eeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454          166 AFSKVDISEKFSLFGGKGV-------------EVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~d~-------------~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  228 (326)
                      ..++|+ +++.|+.+..+.             .|++|++.+..    .++....        .++.++.++.|+|  +++
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~--------~~~~~~~~~~~Sp--Dg~  246 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP--------AQHHRYVGATVTE--DDR  246 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG--------GGCCSEEEEEECT--TSC
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC--------CCCeEEEEEEEcC--CCC
Confidence            457899 998888777663             39999987654    2322111        0123466788887  566


Q ss_pred             EEEEE-e---CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCC---CcEEEEECCCCeE--EEEEcc
Q 020454          229 KFVAG-T---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGS---GDLASVDIRTGKL--LGCFIG  298 (326)
Q Consensus       229 ~l~~~-~---~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~d---g~v~iwd~~~~~~--~~~~~~  298 (326)
                      +|+.. .   ....|+++|+.........+..+....... ++++|..|+ ....+   +.|..+|+.++..  ...+..
T Consensus       247 ~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~  325 (693)
T 3iuj_A          247 FLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP  325 (693)
T ss_dssp             EEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             EEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence            66443 2   235899999986543456666665555554 666766665 44443   5799999987654  234554


Q ss_pred             eecceEEEEEECCCCCEEEEeccCc
Q 020454          299 KCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       299 ~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      | ...+.  .|+++++.|+....++
T Consensus       326 ~-~~~~~--~~s~~g~~lv~~~~~~  347 (693)
T 3iuj_A          326 E-RQQVL--TVHSGSGYLFAEYMVD  347 (693)
T ss_dssp             C-CSSCE--EEEEETTEEEEEEEET
T ss_pred             C-CCCEE--EEEEECCEEEEEEEEC
Confidence            5 44444  8888888777665543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.33  E-value=0.00057  Score=53.74  Aligned_cols=197  Identities=12%  Similarity=0.072  Sum_probs=114.6

Q ss_pred             CCeeeeecccccccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC
Q 020454          104 DGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK  182 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~  182 (326)
                      +.+.++++.+        .++.|++ ...++.|...|.. .        ..++.+.+........+++.+++.++++.-.
T Consensus        27 ~~lSGla~~~--------~~~~L~aV~d~~~~I~~ld~~-g--------~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~   89 (255)
T 3qqz_A           27 NNISSLTWSA--------QSNTLFSTINKPAAIVEMTTN-G--------DLIRTIPLDFVKDLETIEYIGDNQFVISDER   89 (255)
T ss_dssp             SCEEEEEEET--------TTTEEEEEEETTEEEEEEETT-C--------CEEEEEECSSCSSEEEEEECSTTEEEEEETT
T ss_pred             cCcceeEEeC--------CCCEEEEEECCCCeEEEEeCC-C--------CEEEEEecCCCCChHHeEEeCCCEEEEEECC
Confidence            5688898754        3455554 5566777766654 1        2455555554567889999988887777667


Q ss_pred             CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-eEEEEeCCCCCCceeEEe------
Q 020454          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFD------  255 (326)
Q Consensus       183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~------  255 (326)
                      ++.+.++++.....+....................+++|.|. .+.++++.-.+. .|+.|+-......+....      
T Consensus        90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~-~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~  168 (255)
T 3qqz_A           90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ-DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR  168 (255)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT-TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred             CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC-CCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence            788999988654322111111000000112234679999985 233444443343 455555111111122221      


Q ss_pred             -ecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEEEEcce--ec------ceEEEEEECCCCCEEEEe
Q 020454          256 -FRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CS------GSIRSIARHPTLPIIASC  319 (326)
Q Consensus       256 -~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--~~------~~v~~l~~~p~~~~l~s~  319 (326)
                       ..-..+..++++|. +++++....++.+.++|.. ++++..+.-.  +.      ..-..|+|.++|.+.+++
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence             12335789999997 4555677778889999976 5566555421  01      256799999999866654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.32  E-value=0.00025  Score=55.07  Aligned_cols=148  Identities=16%  Similarity=0.157  Sum_probs=98.4

Q ss_pred             eEEEEEccCCCceEEEEEcCCCCEEEEecCC--CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEE
Q 020454          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l  230 (326)
                      .++.+..........+.|++ +.+..+.+.+  +.|+.+|+.+++.+....-...        ..--++++.   +++++
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------~fgeGi~~~---~~~ly   78 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------YFGAGIVAW---RDRLI   78 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------CCEEEEEEE---TTEEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------cceeEEEEe---CCEEE
Confidence            44555444455678999986 5666666665  4899999999998877543221        111233443   34466


Q ss_pred             EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee----cceEEE
Q 020454          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRS  306 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~~  306 (326)
                      .....++.+.+||..+. +.+.++...... ..++  +++..|+++..++.|.++|..+.+.+.++.-..    -..++.
T Consensus        79 ~ltw~~~~v~v~D~~tl-~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           79 QLTWRNHEGFVYDLATL-TPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEESSSSEEEEEETTTT-EEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEeeCCEEEEEECCcC-cEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            66678999999999987 667787765333 3444  578888888889999999999998888776420    124556


Q ss_pred             EEECCCCCEEE
Q 020454          307 IARHPTLPIIA  317 (326)
Q Consensus       307 l~~~p~~~~l~  317 (326)
                      |.|. ++++.+
T Consensus       155 Le~~-~G~lya  164 (243)
T 3mbr_X          155 LEWV-NGELLA  164 (243)
T ss_dssp             EEEE-TTEEEE
T ss_pred             eEEe-CCEEEE
Confidence            6664 444433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.24  E-value=0.0032  Score=58.48  Aligned_cols=225  Identities=10%  Similarity=0.043  Sum_probs=133.9

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~  147 (326)
                      |.+|+.+ -|.+|+..++++...... ...........|.++...         .++.+..++.++.|..++.....   
T Consensus       276 lWigt~~-Gl~~~~~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~D---------~~g~lWigt~~~Gl~~~~~~~~~---  341 (795)
T 4a2l_A          276 LWIGTFN-DLNIYHEGTDSFASYSSN-PVENGSLSQRSVRSIFMD---------SQGGMWLGTYFGGLNYYHPIRNR---  341 (795)
T ss_dssp             EEEEESS-CEEEEETTTTEEEEECCC-TTSTTSCSSSCEEEEEEC---------TTSCEEEEESSSCEEEECGGGGS---
T ss_pred             EEEEeCC-hhheEcCCCCeEEEEecC-CCCCCCCCCCcEEEEEEe---------CCcCEEEEECCCCeEEeCCCccc---
Confidence            7777776 588899876665332211 000001223457766542         34678889988888888754322   


Q ss_pred             ccccceEEEEEcc------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          148 ESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       148 ~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                            ...+...      ....|.++..++++++- .|+.++-|..||..+++..............+ ....|.++..
T Consensus       342 ------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~i~~  413 (795)
T 4a2l_A          342 ------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGI-GSNNIKAVYV  413 (795)
T ss_dssp             ------SEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CC-SCSCEEEEEE
T ss_pred             ------ceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCC-CCccEEEEEE
Confidence                  1111110      23468999998877744 57778789999987665432211110000001 1235777776


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      .+  +++.|..|+.++-|..||..++ + ...+.     .....|.++...++|+..+ |+. +-+.+||..+++.....
T Consensus       414 d~--~g~~lWigt~~~Gl~~~d~~~~-~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~  487 (795)
T 4a2l_A          414 DE--KKSLVYIGTHAGGLSILHRNSG-Q-VENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIE  487 (795)
T ss_dssp             ET--TTTEEEEEETTTEEEEEETTTC-C-EEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECC
T ss_pred             cC--CCCEEEEEeCcCceeEEeCCCC-c-EEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcc
Confidence            54  4543777888788999998865 3 33333     2345789999888886554 444 45889999887654321


Q ss_pred             cc-----eecceEEEEEECCCCCEEEEec
Q 020454          297 IG-----KCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       297 ~~-----~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ..     -....|.++...+++.+.+...
T Consensus       488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~  516 (795)
T 4a2l_A          488 KEKDGTPVVSKQITTLFRDSHKRLWIGGE  516 (795)
T ss_dssp             BCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred             ccccccccCCceEEEEEECCCCCEEEEeC
Confidence            11     0135789999998887665543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.13  E-value=0.0027  Score=53.50  Aligned_cols=206  Identities=8%  Similarity=-0.024  Sum_probs=113.5

Q ss_pred             EEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce-EEEEecCC
Q 020454           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKG  133 (326)
Q Consensus        55 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g  133 (326)
                      .++.++.. .+.++++-...+.|..+++..+.....+.        .+.....++++..        ..+. +++-...+
T Consensus       119 ~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--------~~~~~p~glavd~--------~~g~lY~~d~~~~  181 (386)
T 3v65_B          119 IALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEVVS--------TGLESPGGLAVDW--------VHDKLYWTDSGTS  181 (386)
T ss_dssp             EEEEEETT-TTEEEEEETTTTEEEEEETTSCCEEEEEC--------SSCSCCCCEEEET--------TTTEEEEEETTTT
T ss_pred             EEEEEecC-CCeEEEEeCCCCcEEEEecCCCCcEEEEe--------CCCCCccEEEEEe--------CCCeEEEEcCCCC
Confidence            34444422 33345555667889999886554322222        1112234455422        2233 34444556


Q ss_pred             cEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-CC-CeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KG-VEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       134 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      .|.+.+++...        ...+. .........++++|.+..|+... .. +.|..+++............        
T Consensus       182 ~I~~~~~dg~~--------~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~--------  244 (386)
T 3v65_B          182 RIEVANLDGAH--------RKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH--------  244 (386)
T ss_dssp             EEEECBTTSCS--------CEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS--------
T ss_pred             eEEEEeCCCCc--------eEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC--------
Confidence            66665543211        11111 12234678899998766554433 33 67888887643322222110        


Q ss_pred             CCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                       ..+..++++.|. +++++++-+..+.|..+|+... .....+.........+++ ..+..+++-...+.|..+|..+++
T Consensus       245 -~~~PnGlavd~~-~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          245 -LFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             -CSCEEEEEEEGG-GTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             -CCCeeeEEEeCC-CCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence             135678999975 4556666677889999998743 222222223345677787 344455566677889999977776


Q ss_pred             EEEEEcc
Q 020454          292 LLGCFIG  298 (326)
Q Consensus       292 ~~~~~~~  298 (326)
                      .+..+..
T Consensus       321 ~~~~i~~  327 (386)
T 3v65_B          321 NQEIIRN  327 (386)
T ss_dssp             SCEEEEC
T ss_pred             ceEEEcc
Confidence            6665553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.12  E-value=0.00061  Score=61.87  Aligned_cols=93  Identities=9%  Similarity=-0.061  Sum_probs=55.6

Q ss_pred             CCcEEEEEeCCC-----------eEEEEeCCCCCCceeEEe---ecCCc-eEEEEecCCCCeEEEEcCC-----------
Q 020454          226 DHRKFVAGTNDH-----------QVRLYDTSAQRRPVMSFD---FRETP-IKAVAEEPDSFNIYIGNGS-----------  279 (326)
Q Consensus       226 ~~~~l~~~~~dg-----------~v~iwd~~~~~~~~~~~~---~~~~~-i~~v~~s~~~~~l~~g~~d-----------  279 (326)
                      ++++++.|+.++           .|.+||+.+. . -....   ..... -.+++..|+++.++.|+.+           
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~-W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~  487 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-P-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV  487 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-C-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-C-eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcc
Confidence            456777776432           6788888754 2 22221   12222 2344566899999988764           


Q ss_pred             CcEEEEECCCCeEEEE--EcceecceEEEEEECCCCCEEEEecc
Q 020454          280 GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      ..+.+||..+.+....  +... ........+.|++++++.||.
T Consensus       488 ~~v~~ydp~t~~W~~~~~~~~~-R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          488 FTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCEEEEGGGTEEEECCCCSSC-CCTTEEEEECTTSCEEEEECC
T ss_pred             cceEEEcCCCCceeecCCCCCc-cccccHhhcCCCcEEEecCCC
Confidence            4689999988764321  1111 111223445689999999984

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.09  E-value=0.0022  Score=50.94  Aligned_cols=144  Identities=8%  Similarity=-0.018  Sum_probs=90.5

Q ss_pred             CceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       163 ~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      ..+..++++++++ ++++-..++.|..+++............      +   .....+++.|. .+.++++-...+.|.+
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~------~---~~p~~ia~d~~-~~~lyv~d~~~~~I~~  105 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD------L---GSPEGIALDHL-GRTIFWTDSQLDRIEV  105 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT------C---CCEEEEEEETT-TTEEEEEETTTTEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC------C---CCccEEEEEec-CCeEEEEECCCCEEEE
Confidence            3578899999765 4455556789999998765432222110      0   24678888874 3446666667889999


Q ss_pred             EeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcC---CCcEEEEECCCCeEEEEE-cceecceEEEEEECCCCCEE
Q 020454          242 YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       242 wd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l  316 (326)
                      +++... . ...+. ........++++|++..|+.+..   .+.|..+++... ....+ ... ......++++|++..|
T Consensus       106 ~~~~g~-~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~-~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          106 AKMDGT-Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDN-LGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             EETTSC-S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTT-CSCEEEEEEETTTTEE
T ss_pred             EEcCCC-C-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECC-CCCCcEEEEcCCCCEE
Confidence            998743 2 22222 22245688999997666665554   368888888643 22222 222 3457889999987665


Q ss_pred             EEec
Q 020454          317 ASCG  320 (326)
Q Consensus       317 ~s~s  320 (326)
                      ..+.
T Consensus       182 yv~d  185 (267)
T 1npe_A          182 CWVD  185 (267)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.98  E-value=0.0055  Score=51.62  Aligned_cols=206  Identities=9%  Similarity=0.031  Sum_probs=114.2

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEcccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVT  143 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~  143 (326)
                      ..+|+.+. ...|+.+++...+.......         ...+.++++..        .++.|+ +-...+.|+.++++..
T Consensus        87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~--------~~~~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHH--------RRELVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             CCEEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSC
T ss_pred             cceeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEec--------CCCeEEEEeCCCCcEEEEecCCC
Confidence            33455544 46788888866554333321         13466677643        233444 4445667777765432


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                      .         +..+-.........+++++.+ ++.++-...+.|.+.++........+...      +   ....++++.
T Consensus       149 ~---------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~------l---~~P~giavd  210 (386)
T 3v65_B          149 N---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS------L---EKPRAIALH  210 (386)
T ss_dssp             C---------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS------C---SCEEEEEEE
T ss_pred             C---------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC------C---CCCcEEEEE
Confidence            1         111111122345677888754 55556566778888887654322222111      1   235688888


Q ss_pred             ecCCCcEEEEEeCC-CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEccee
Q 020454          223 SIDDHRKFVAGTND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKC  300 (326)
Q Consensus       223 p~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~~  300 (326)
                      |. ++.++++-... +.|..+++... .........-.....++++|++..|+.+ +..+.|..+|+........+... 
T Consensus       211 p~-~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-  287 (386)
T 3v65_B          211 PM-EGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-  287 (386)
T ss_dssp             TT-TTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-
T ss_pred             cC-CCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-
Confidence            75 45455665555 78999988744 2122222233456899999877777654 45678999998753332223322 


Q ss_pred             cceEEEEEE
Q 020454          301 SGSIRSIAR  309 (326)
Q Consensus       301 ~~~v~~l~~  309 (326)
                      ......|++
T Consensus       288 ~~~P~giav  296 (386)
T 3v65_B          288 LPHPFAITV  296 (386)
T ss_dssp             CSSEEEEEE
T ss_pred             CCCceEEEE
Confidence            334456666

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.94  E-value=0.0049  Score=50.41  Aligned_cols=178  Identities=9%  Similarity=0.017  Sum_probs=101.2

Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccC-------------------CCceEEEEEcC-CCCEEEEecC
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-------------------SGTIAFSKVDI-SEKFSLFGGK  182 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~v~~~~~~~-~~~~l~sg~~  182 (326)
                      +..+++...++.|..|+....         .+..|....                   ......+++++ +++++ ++..
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d~   99 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNS---------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVDC   99 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTT---------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEET
T ss_pred             CCEEEEEcCCCeEEEECCCCC---------ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEEC
Confidence            345788888888888875432         222332110                   12478899997 55544 4444


Q ss_pred             CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-----------------CCeEEEEeCC
Q 020454          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------------DHQVRLYDTS  245 (326)
Q Consensus       183 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-----------------dg~v~iwd~~  245 (326)
                      .+.|..+|..+++...........     .......+++.+. +++++++-..                 ++.|..||..
T Consensus       100 ~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A          100 YYHLSVVGSEGGHATQLATSVDGV-----PFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             TTEEEEECTTCEECEEEESEETTE-----ECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             CCCEEEEeCCCCEEEEecccCCCC-----cccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            456888887755432111110000     0123566777651 3445555432                 3778889887


Q ss_pred             CCCCceeEEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCe--EEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ++ + +..+...-.....++++|++++|+++ +..+.|.+|++....  ....+... .+ ...+++++++.+.++..
T Consensus       174 ~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          174 TK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             TT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEE
T ss_pred             CC-E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEec
Confidence            54 2 22222222345678999999877655 556899999987521  11112211 33 67889999888666653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.92  E-value=0.00067  Score=56.81  Aligned_cols=126  Identities=14%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             eEEEEEccC---CCceEEEEEcCCCCEEEEecCCCeEEEEECCCcee--------------eeeecCCCCCCCCcCCCCc
Q 020454          153 TVKSWNVCA---SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--------------IWTAKPPPKNSLGIFTPTW  215 (326)
Q Consensus       153 ~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~  215 (326)
                      ..+.++...   -..+..+..+|+|++||..+. ..|.|-.+..+..              .+.+...     ....+..
T Consensus        53 ~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~-----~~~~~s~  126 (452)
T 3pbp_A           53 LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE-----EVGPKSS  126 (452)
T ss_dssp             SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC-----C--CCCC
T ss_pred             cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc-----ccCCCCc
Confidence            566666652   336888999999999998765 4888988873211              1111110     1112457


Q ss_pred             eeeeEEeecC-CCcEEEEEeCCCeEEEEeCCC-CCCceeEEe---------ecCCceEEEEecCCCCeEEEEc--CCCcE
Q 020454          216 FTSAAFLSID-DHRKFVAGTNDHQVRLYDTSA-QRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGN--GSGDL  282 (326)
Q Consensus       216 v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~---------~~~~~i~~v~~s~~~~~l~~g~--~dg~v  282 (326)
                      |..+.|+|-. .+..|++-..|+.|++||+.. ...|. .+.         .....|.+++|..++-.|++.+  ..|.|
T Consensus       127 I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI  205 (452)
T 3pbp_A          127 IKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI  205 (452)
T ss_dssp             EEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred             eeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence            9999999953 244899999999999999874 33444 222         1235788999999888777755  77877


Q ss_pred             EEE
Q 020454          283 ASV  285 (326)
Q Consensus       283 ~iw  285 (326)
                      +-.
T Consensus       206 YAl  208 (452)
T 3pbp_A          206 FAF  208 (452)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.87  E-value=0.0079  Score=49.91  Aligned_cols=195  Identities=8%  Similarity=-0.056  Sum_probs=109.8

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce-EEEEecCCcEEEEEccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g~v~i~~~~~~~  144 (326)
                      .++++-...+.|..+++..+.....+.        .+.....++++..        .++. +++-...+.|.+.+++...
T Consensus        86 ~ly~~D~~~~~I~r~~~~g~~~~~~~~--------~~~~~p~glavd~--------~~g~ly~~d~~~~~I~~~~~dG~~  149 (349)
T 3v64_C           86 LVFWSDVTLDRILRANLNGSNVEEVVS--------TGLESPGGLAVDW--------VHDKLYWTDSGTSRIEVANLDGAH  149 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSCCCEEEEET--------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEEEeccCCceEEEecCCCCceEEEe--------CCCCCccEEEEec--------CCCeEEEEcCCCCeEEEEcCCCCc
Confidence            344555567888888886544322222        1112334555432        2233 4444556777777755321


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCCCEE-EEecCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                              ...+. .........++++|.+..| .+-... +.|..+++...........         ...+..++++.
T Consensus       150 --------~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------~~~~PnGla~d  211 (349)
T 3v64_C          150 --------RKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------HLFWPNGLTID  211 (349)
T ss_dssp             --------CEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS---------SCSCEEEEEEE
T ss_pred             --------eEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------CCCCcceEEEe
Confidence                    11111 1223457899999866544 443344 7788888764322211111         01356789999


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      |. ++.++++-+..+.|..+|+... .....+.........+++. .+..+++-...+.|..++..+|+....+.
T Consensus       212 ~~-~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          212 YA-GRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TT-TTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CC-CCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            75 4556666677889999998743 2222222233456777873 44445566667889999977776655554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.85  E-value=0.0002  Score=66.01  Aligned_cols=146  Identities=13%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             ceEEEEEc-CCCCEEEEecC-----CCeEEEEECCCc-eeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454          164 TIAFSKVD-ISEKFSLFGGK-----GVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       164 ~v~~~~~~-~~~~~l~sg~~-----d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                      .+...+|+ |+|++||.+..     ...|+++|+.++ +.+..       .  +  +....++.|+|  +++.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~--~--~~~~~~~~Wsp--Dg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------K--V--SGTNGEIVWGP--DHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------C--E--EEECSCCEECS--STTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------c--c--cCceeeEEEec--CCCEEEEEEEC
Confidence            46788999 99998875332     235999999987 53211       0  0  01134678988  45566655544


Q ss_pred             -----CeEEEEeCCCCCC-ceeEEee-cCCceEEEEecCCCCeEEEEcC---CCcEEEEECCCC--eE-EEEEcceecce
Q 020454          237 -----HQVRLYDTSAQRR-PVMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTG--KL-LGCFIGKCSGS  303 (326)
Q Consensus       237 -----g~v~iwd~~~~~~-~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~---dg~v~iwd~~~~--~~-~~~~~~~~~~~  303 (326)
                           ..|+++++.+... ....+.. .......+.|+|||++|+..+.   ...|+++|+.++  +. +..+.....+.
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence                 3688888876421 1223322 2234567899999999885442   346888999875  22 12332221455


Q ss_pred             EEEEEECCCCCEEEEeccC
Q 020454          304 IRSIARHPTLPIIASCGFL  322 (326)
Q Consensus       304 v~~l~~~p~~~~l~s~s~D  322 (326)
                      ..++.|+..+.+++....|
T Consensus       322 ~~s~~~~~g~~l~~~t~~~  340 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEG  340 (751)
T ss_dssp             CEEEEEETTTEEEEEECTT
T ss_pred             eEEEeeeeCCEEEEEeCCC
Confidence            6666665555555554443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.019  Score=53.15  Aligned_cols=231  Identities=9%  Similarity=0.065  Sum_probs=126.3

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~  147 (326)
                      |.+|+.+ -|.+||..++++....... ..........|.++...         .++.+..++..+.+.+++........
T Consensus       224 lwigt~~-Gl~~~d~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d---------~~g~lWigt~~~Gl~~~~~~~~~~~~  292 (781)
T 3v9f_A          224 IWIGTSK-GLALFNANTETFTNFHNNP-GNIHGALSSYIFSIKQL---------KDNKLWIATELNGIMILDLQQNQFLL  292 (781)
T ss_dssp             EEEEETT-EEEEEETTTTEEEC------------CCCCEEEEEEC---------TTSEEEEEESSSCEEEEETTCC----
T ss_pred             EEEEeCC-cHheECCCCCcEEEEEcCC-CccccccCceEEEEEEC---------CCCCEEEEeCCCCeEEECCCCCeeee
Confidence            6777766 5888998766653221110 00000123457666542         35678888886778888865432100


Q ss_pred             ccccceEEEE-Ec-----cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCC-CCCCCcCCCCceeeeE
Q 020454          148 ESSCSTVKSW-NV-----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP-KNSLGIFTPTWFTSAA  220 (326)
Q Consensus       148 ~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~  220 (326)
                      -.. .....+ ..     -....|.++..+++++ |..|+.++-|..++..+........... .....+ ....|.++.
T Consensus       293 ~~~-~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~i~  369 (781)
T 3v9f_A          293 PEQ-IRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSL-SNKVVSSVC  369 (781)
T ss_dssp             ------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCC-SSSCEEEEE
T ss_pred             eec-cccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCC-CCcceEEEE
Confidence            000 000000 00     0134689999988776 4567777889999877544322111000 000011 123577776


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE----eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~  296 (326)
                      ..+  ++ .|..|+.++-|..||..+. . ...+    ......|.++...++|+ |.+|+.++-+..+|.++++.....
T Consensus       370 ~d~--~g-~lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~  443 (781)
T 3v9f_A          370 DDG--QG-KLWIGTDGGGINVFENGKR-V-AIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIE  443 (781)
T ss_dssp             ECT--TS-CEEEEEBSSCEEEEETTEE-E-EECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECC
T ss_pred             EcC--CC-CEEEEeCCCcEEEEECCCC-e-EEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEec
Confidence            653  44 5667776677888997643 1 1111    12345788988877775 555777777999998877643321


Q ss_pred             c--ceecceEEEEEECCCCCEEEEe
Q 020454          297 I--GKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       297 ~--~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      .  .. ...|.++...+++.+.+..
T Consensus       444 ~~~~~-~~~v~~i~~d~~g~lwigt  467 (781)
T 3v9f_A          444 LEKNE-LLDVRVFYEDKNKKIWIGT  467 (781)
T ss_dssp             STTTC-CCCEEEEEECTTSEEEEEE
T ss_pred             cCCCC-CCeEEEEEECCCCCEEEEE
Confidence            1  12 4579999988887655543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.022  Score=52.76  Aligned_cols=231  Identities=12%  Similarity=0.022  Sum_probs=134.0

Q ss_pred             eEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccC-CCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG-DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        53 ~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      .+.++..+...   .|.+|+.++-|..|+..++.+........ ..........|.++...         .++.+..++.
T Consensus       314 ~v~~i~~D~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d---------~~g~lWigt~  381 (781)
T 3v9f_A          314 SARYIFQDSFN---NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD---------GQGKLWIGTD  381 (781)
T ss_dssp             CEEEEEECSSC---CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC---------TTSCEEEEEB
T ss_pred             eEEEEEEeCCC---CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc---------CCCCEEEEeC
Confidence            44444444332   38889988889999987655432211000 00001122456666542         2467888888


Q ss_pred             CCcEEEEEccccccccccccceEEEEE---ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      ++.+..++.....         ...+.   .-....|.++...+++++. .|+.++.|..+|..+++....... .    
T Consensus       382 ~~Gl~~~~~~~~~---------~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~-~----  446 (781)
T 3v9f_A          382 GGGINVFENGKRV---------AIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELE-K----  446 (781)
T ss_dssp             SSCEEEEETTEEE---------EECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECCST-T----
T ss_pred             CCcEEEEECCCCe---------EEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccC-C----
Confidence            8888888864321         11110   1123578899888777755 467777899999877654322111 0    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee-c-----CCceEEEEecCCCCeEEEEcCCCcE
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-R-----ETPIKAVAEEPDSFNIYIGNGSGDL  282 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~-----~~~i~~v~~s~~~~~l~~g~~dg~v  282 (326)
                       + ....|.++...+  ++ .|..++. +-+..||..+. + ...+.. .     ...|.++...++|+. ..|+.++-+
T Consensus       447 -~-~~~~v~~i~~d~--~g-~lwigt~-~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl  517 (781)
T 3v9f_A          447 -N-ELLDVRVFYEDK--NK-KIWIGTH-AGVFVIDLASK-K-VIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGV  517 (781)
T ss_dssp             -T-CCCCEEEEEECT--TS-EEEEEET-TEEEEEESSSS-S-CCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCE
T ss_pred             -C-CCCeEEEEEECC--CC-CEEEEEC-CceEEEeCCCC-e-EEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCE
Confidence             0 123466766543  45 5666666 56889998765 2 222221 1     357899998888864 455554458


Q ss_pred             EEEECCCCeEEEEEcc---eecceEEEEEECCCCCEEEEec
Q 020454          283 ASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       283 ~iwd~~~~~~~~~~~~---~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ..||..+++.. .+..   -....|.++...+++.+.++..
T Consensus       518 ~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~  557 (781)
T 3v9f_A          518 GIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG  557 (781)
T ss_dssp             EEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred             EEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence            88998776543 3331   1135689999988887665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.74  E-value=0.012  Score=48.16  Aligned_cols=197  Identities=12%  Similarity=0.122  Sum_probs=113.6

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCc---e-EEEEec--CCcEEEEEc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR---T-LLTCTT--KGKASMRSI  140 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~---~-l~~~~~--~g~v~i~~~  140 (326)
                      +++.....+-+.+||+ +|+.+..+..          +.+.++..-+.-..    .+.   . +++.-.  +++|.+|++
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l----~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPL----NGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEE----TTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEeccccc----CCceEeEEEEeCCCCCCCeEEEEEE
Confidence            4566667789999999 8887777642          34444433220000    011   2 222333  578999987


Q ss_pred             cccccccccccceEEEEE-----ccCC-CceEEEEE--cCC-CC-EEEEecCCCeEEEEECC-------CceeeeeecCC
Q 020454          141 EVTKVSAESSCSTVKSWN-----VCAS-GTIAFSKV--DIS-EK-FSLFGGKGVEVNVWDLD-------KCEKIWTAKPP  203 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-----~~~~-~~v~~~~~--~~~-~~-~l~sg~~d~~i~iwd~~-------~~~~~~~~~~~  203 (326)
                      +....       .+...-     +... ..+..+++  +|. ++ ++++..+++.+..|++.       +.+.+.++...
T Consensus       107 Dp~~~-------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg  179 (355)
T 3amr_A          107 DGKNG-------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN  179 (355)
T ss_dssp             CTTTC-------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             CCCCC-------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC
Confidence            53221       122110     0011 34555555  664 43 67788899999999983       23444443332


Q ss_pred             CCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC----CceeEEee--cCCceEEEEe--cCCCC-eEE
Q 020454          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDF--RETPIKAVAE--EPDSF-NIY  274 (326)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~--~~~~i~~v~~--s~~~~-~l~  274 (326)
                                ..+..+...+.  ...|+.+-.+.-|..||.+...    +.+..+..  -...+..|++  .++++ +|+
T Consensus       180 ----------sq~EgcvvDd~--~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          180 ----------SQTEGMAADDE--YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             ----------SCEEEEEEETT--TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             ----------CCcceEEEcCC--CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence                      23556677653  3388888888777777755221    12222211  1235778887  45555 676


Q ss_pred             EEc-CCCcEEEEECC-CCeEEEEEc
Q 020454          275 IGN-GSGDLASVDIR-TGKLLGCFI  297 (326)
Q Consensus       275 ~g~-~dg~v~iwd~~-~~~~~~~~~  297 (326)
                      +++ .++++.+||.+ +.+.+..|.
T Consensus       248 vSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          248 ASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCCcEEEEEE
Confidence            666 56799999997 677777775

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.69  E-value=0.023  Score=52.44  Aligned_cols=192  Identities=11%  Similarity=0.069  Sum_probs=96.0

Q ss_pred             eeeC-CCCCeEEEEec-CC----cEEEEecccc-ceeee-ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe
Q 020454           59 IDDS-QNDPLLAVARK-NG----LTDILNPLNG-DLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (326)
Q Consensus        59 ~~~~-~~~~~l~~g~~-dg----~i~i~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~  130 (326)
                      +..+ +++++|+.+.. +|    +|+++|+.++ +.+.. +.           ....++.+.+        ++..|+...
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----------~~~~~~~Wsp--------Dg~~l~y~~  239 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----------GTNGEIVWGP--------DHTSLFYVT  239 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----------EECSCCEECS--------STTEEEEEE
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----------CceeeEEEec--------CCCEEEEEE
Confidence            4456 67777776554 33    4999999887 63221 11           1122344433        445666655


Q ss_pred             cC-----CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec---CCCeEEEEECCCce-ee--ee
Q 020454          131 TK-----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCE-KI--WT  199 (326)
Q Consensus       131 ~~-----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~d~~i~iwd~~~~~-~~--~~  199 (326)
                      .+     ..|+.+++....      .....++..........+.++|++++|+...   ....|.++|+.++. ..  ..
T Consensus       240 ~d~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~  313 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQ------SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI  313 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCG------GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred             ECCCCCCCEEEEEECCCCc------hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence            54     245556554321      1123455433334466789999999887654   23468888987652 11  11


Q ss_pred             ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC----CeEEEEeCCCCCCceeE-EeecCC--ceEEEEecCCCCe
Q 020454          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMS-FDFRET--PIKAVAEEPDSFN  272 (326)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~-~~~~~~--~i~~v~~s~~~~~  272 (326)
                      +....        .....++.|+.  ++.+++....+    ..|..+|+.+... ... +..+..  .+..+.+. .+..
T Consensus       314 l~~~~--------~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~-~~~l  381 (751)
T 2xe4_A          314 VRPRE--------KGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR-SNYL  381 (751)
T ss_dssp             SSCCC--------TTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred             eecCC--------CCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE-CCEE
Confidence            11111        01122333321  23234444333    3677777764211 222 222322  34555554 2334


Q ss_pred             EEEEcCCCc--EEEEEC
Q 020454          273 IYIGNGSGD--LASVDI  287 (326)
Q Consensus       273 l~~g~~dg~--v~iwd~  287 (326)
                      +++...+|.  |.++|+
T Consensus       382 v~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          382 VVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCEEEEEEEec
Confidence            456677775  556665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.67  E-value=0.017  Score=47.80  Aligned_cols=204  Identities=9%  Similarity=0.035  Sum_probs=114.3

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTK  144 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~  144 (326)
                      ++|+.+.. ..|+..++...+....+..         ...+.++.+..        .++.|+ +-...+.|+.++++...
T Consensus        45 ~~ll~~~~-~~I~~i~~~g~~~~~~~~~---------~~~~~~l~~d~--------~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           45 PVLLFANR-IDIRQVLPHRSEYTLLLNN---------LENAIALDFHH--------RRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             CEEEEECB-SCEEEECTTSCCEEEEECS---------CSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ceeEeecc-cceEEEeCCCCeeEEeecC---------CCceEEEEEec--------cccEEEEEeccCCceEEEecCCCC
Confidence            34555443 5688888865544332221         13466677643        233444 43456777777654322


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                               ...+-.........+++++.+ ++.++-...+.|.+.++............      +   ....++++.|
T Consensus       107 ---------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~------l---~~P~~iavdp  168 (349)
T 3v64_C          107 ---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS------L---EKPRAIALHP  168 (349)
T ss_dssp             ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT------C---SCEEEEEEET
T ss_pred             ---------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC------C---CCcceEEEec
Confidence                     111111122345678888754 55566666788999998754332222111      1   2356888988


Q ss_pred             cCCCcEEEEEeCC-CeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEccee
Q 020454          224 IDDHRKFVAGTND-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC  300 (326)
Q Consensus       224 ~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~  300 (326)
                      . ++.++++-... +.|..+++... . ...+ ...-.....++++|++..|+.+. ..+.|..+|+........+... 
T Consensus       169 ~-~g~ly~td~~~~~~I~r~~~dG~-~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-  244 (349)
T 3v64_C          169 M-EGTIYWTDWGNTPRIEASSMDGS-G-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-  244 (349)
T ss_dssp             T-TTEEEEEECSSSCEEEEEETTSC-S-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-
T ss_pred             C-cCeEEEeccCCCCEEEEEeCCCC-C-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-
Confidence            5 45566666656 88999988743 2 2222 22234568899998777776554 5678999998753322223322 


Q ss_pred             cceEEEEEE
Q 020454          301 SGSIRSIAR  309 (326)
Q Consensus       301 ~~~v~~l~~  309 (326)
                      ......|++
T Consensus       245 ~~~P~giav  253 (349)
T 3v64_C          245 LPHPFAITV  253 (349)
T ss_dssp             CSSEEEEEE
T ss_pred             CCCceEEEE
Confidence            334456666

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.64  E-value=0.0051  Score=52.63  Aligned_cols=143  Identities=10%  Similarity=0.059  Sum_probs=85.7

Q ss_pred             ceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC-CC----
Q 020454          164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH----  237 (326)
Q Consensus       164 ~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~-dg----  237 (326)
                      ....++++| ++..|+++...+.|+.+|+..+........          ......++|.+  ++++|+++.. ++    
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------~~~P~~ia~d~--~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------LSKVRTICWTH--EADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------CSCEEEEEECT--TSSEEEEEECCSCTTSE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcceEEEeC--CCCEEEEEeCCCCcccc
Confidence            456788998 355555555448899999987665433321          13466888887  4554554443 22    


Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                      .+.+++..........+.. ......++++| ++..+++-..++.|..|+..++.............-+.|+|+|++++|
T Consensus       206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            3444554322121223322 23457789999 566666666778999999987765332221112346789999999855


Q ss_pred             EEe
Q 020454          317 ASC  319 (326)
Q Consensus       317 ~s~  319 (326)
                      ..+
T Consensus       285 yv~  287 (430)
T 3tc9_A          285 YIV  287 (430)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.64  E-value=0.0011  Score=60.38  Aligned_cols=162  Identities=13%  Similarity=0.029  Sum_probs=87.7

Q ss_pred             eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeeeecC
Q 020454          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKP  202 (326)
Q Consensus       125 ~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~  202 (326)
                      .+++-...+.|.+.+++...         ++.+-.........++++|.+.+|+....  .+.|..+++........+..
T Consensus       467 LY~tD~~~~~I~v~d~dg~~---------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~  537 (699)
T 1n7d_A          467 IYWTDSVLGTVSVADTKGVK---------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  537 (699)
T ss_dssp             CEECCTTTSCEEEEBSSSCC---------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred             EEEEeccCCeEEEEecCCCc---------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence            34444556777777654321         11111111234567889987654444332  26777777653222111111


Q ss_pred             CCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCC
Q 020454          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS  279 (326)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~d  279 (326)
                            .+   .+..++++.|. .++++++-+..+.|..+|+... . ...+..   .-.....|++..+ ..+++-...
T Consensus       538 ------~l---~~PnGlavd~~-~~~LY~aD~~~~~I~~~d~dG~-~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~  604 (699)
T 1n7d_A          538 ------NI---QWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAHPFSLAVFED-KVFWTDIIN  604 (699)
T ss_dssp             ------SC---SSCCCEEECTT-TCCEEEEETTTTEEEEECSSSS-C-CEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred             ------CC---CCccEEEEecc-CCEEEEEecCCCeEEEEccCCC-c-eEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence                  01   34568899885 4556677777889999998743 2 222221   1122344555433 333355566


Q ss_pred             CcEEEEECCCCeEEEEEcceecceEEEEEE
Q 020454          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~  309 (326)
                      +.|..+|..+++.+..+... ......|++
T Consensus       605 ~~V~~~d~~~G~~~~~i~~~-~~~P~~i~v  633 (699)
T 1n7d_A          605 EAIFSANRLTGSDVNLLAEN-LLSPEDMVL  633 (699)
T ss_dssp             TCEEEEETTTEEEEECCCTT-CSSCCCCCB
T ss_pred             CeEEEEEccCCCceEEeecC-CCCCcEEEE
Confidence            88999999888887766533 223444543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.54  E-value=0.025  Score=46.16  Aligned_cols=165  Identities=7%  Similarity=-0.050  Sum_probs=96.8

Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC-EEEEecCCCeEEEEECCC----ceeeeeecCCCC
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPK  205 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~----~~~~~~~~~~~~  205 (326)
                      ....|+..+++...        ...+.  ........+++++.++ ++++-..++.|..+++..    ......+...  
T Consensus         8 ~~~~I~~i~~~~~~--------~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~--   75 (316)
T 1ijq_A            8 NRHEVRKMTLDRSE--------YTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--   75 (316)
T ss_dssp             CBSSEEEEETTSCC--------CEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--
T ss_pred             CCCeEEEEECCCcc--------eEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC--
Confidence            34567777765433        11121  2345678999998664 555555678999999875    1211111110  


Q ss_pred             CCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEEcCC--CcE
Q 020454          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGS--GDL  282 (326)
Q Consensus       206 ~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g~~d--g~v  282 (326)
                          +   ....++++.+. .++++++-...+.|.++|+... . ...+ .........++++|.+..|+.....  +.|
T Consensus        76 ----~---~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~-~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           76 ----I---QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGV-K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (316)
T ss_dssp             ----C---SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSS-S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             ----C---CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCC-c-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence                1   22457787753 3446666677899999998743 2 2333 2233567899999977766655543  688


Q ss_pred             EEEECCCCeEEEEE-cceecceEEEEEECCCCCEEEEe
Q 020454          283 ASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       283 ~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ..+++.. +....+ ... -...+.|+++|++..|..+
T Consensus       146 ~~~~~dG-~~~~~~~~~~-~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          146 KKGGLNG-VDIYSLVTEN-IQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             EEEETTS-CCEEEEECSS-CSCEEEEEEETTTTEEEEE
T ss_pred             EEEcCCC-CCeEEEEECC-CCCceEEEEeccCCEEEEE
Confidence            8888863 333333 222 4467789999876655444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.47  E-value=0.031  Score=45.59  Aligned_cols=229  Identities=9%  Similarity=-0.006  Sum_probs=121.6

Q ss_pred             cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc---ceeeeecccCCCCC
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGA   99 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~---~~~~~~~~~~~~~~   99 (326)
                      ...|+..++.+.     ........   .....++.++.. .+.++++-..++.|..+++...   .....+..      
T Consensus         9 ~~~I~~i~~~~~-----~~~~~~~~---~~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~------   73 (316)
T 1ijq_A            9 RHEVRKMTLDRS-----EYTSLIPN---LRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------   73 (316)
T ss_dssp             BSSEEEEETTSC-----CCEEEECS---CSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEEC------
T ss_pred             CCeEEEEECCCc-----ceEehhcC---CCceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCcccEEEEe------
Confidence            356888888765     22111111   112234444322 2335555566789999988641   21121111      


Q ss_pred             CCCCCCeeeeecccccccccCCCCce-EEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEE
Q 020454          100 QPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (326)
Q Consensus       100 ~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  178 (326)
                       ..-....++++..        .++. +++-...+.|.+.+++...        ...+.. ........++++|.+..|+
T Consensus        74 -~~~~~p~glavd~--------~~~~ly~~d~~~~~I~~~~~~g~~--------~~~~~~-~~~~~P~~iavdp~~g~ly  135 (316)
T 1ijq_A           74 -RDIQAPDGLAVDW--------IHSNIYWTDSVLGTVSVADTKGVK--------RKTLFR-ENGSKPRAIVVDPVHGFMY  135 (316)
T ss_dssp             -SSCSCCCEEEEET--------TTTEEEEEETTTTEEEEEETTSSS--------EEEEEE-CTTCCEEEEEEETTTTEEE
T ss_pred             -CCCCCcCEEEEee--------cCCeEEEEECCCCEEEEEeCCCCc--------eEEEEE-CCCCCcceEEeCCCCCEEE
Confidence             1112334555421        2233 4444667788887764321        111122 1234678999998765544


Q ss_pred             EecC-C-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee
Q 020454          179 FGGK-G-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (326)
Q Consensus       179 sg~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  256 (326)
                      .+.. . +.|..+++...........         ...+...+++.|. +++++++-+..+.|..+|+... . ...+..
T Consensus       136 ~~d~~~~~~I~~~~~dG~~~~~~~~~---------~~~~P~gla~d~~-~~~lY~~D~~~~~I~~~d~dg~-~-~~~~~~  203 (316)
T 1ijq_A          136 WTDWGTPAKIKKGGLNGVDIYSLVTE---------NIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTILE  203 (316)
T ss_dssp             EEECSSSCEEEEEETTSCCEEEEECS---------SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-S-CEEEEE
T ss_pred             EEccCCCCeEEEEcCCCCCeEEEEEC---------CCCCceEEEEecc-CCEEEEEECCCCeEEEEecCCC-c-eEEEee
Confidence            4333 2 6788888764322111111         0145778999874 4545666677889999998743 2 233322


Q ss_pred             ---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          257 ---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       257 ---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                         .-.....+++. .+..+++-...+.|..+|..+++.+..+.
T Consensus       204 ~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          204 DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             cCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence               12345677874 34445566667889999987776555544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.38  E-value=0.049  Score=45.92  Aligned_cols=210  Identities=13%  Similarity=0.089  Sum_probs=121.7

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      ..+.+|.- ...++.|||+++...++.+...         ..|.-..|.+          ...+.--.+..|+-|+++. 
T Consensus        76 ~~~iiALr-ag~~lQiFnle~K~klks~~~~---------e~VvfWkWis----------~~~l~lVT~taVyHWsi~~-  134 (494)
T 1bpo_A           76 ASKVIALK-AGKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWIS----------LNTVALVTDNAVYHWSMEG-  134 (494)
T ss_dssp             SSSCEEEE-ETTEEEEEETTTTEEEEEEECS---------SCCCEEEEEE----------TTEEEEECSSEEEEEESSS-
T ss_pred             CCcEEEEe-cCCeEEEEchHHhhhhcceecC---------CCceEEEecC----------CCeEEEEcCCeeEEecccC-
Confidence            33455554 4799999999988777766641         2455455543          2344444567789999864 


Q ss_pred             ccccccccceEEEEEccC---CCceEEEEEcCCCCEEEEecC-------CCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454          144 KVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK-------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  213 (326)
                            ...++++++...   ...|.....+++.++++..|-       .|.+.+|..+.+.. ..+.+|......+..+
T Consensus       135 ------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~  207 (494)
T 1bpo_A          135 ------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKME  207 (494)
T ss_dssp             ------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECT
T ss_pred             ------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecC
Confidence                  234777777532   456888888999998875442       36688888875432 1122221110000000


Q ss_pred             CceeeeEEeecCCCcEEEEEeC---CCeEEEEeCCCC---CCce--eEEe------ecCCceEEEEecCCCCeEEEEcCC
Q 020454          214 TWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSAQ---RRPV--MSFD------FRETPIKAVAEEPDSFNIYIGNGS  279 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~~---dg~v~iwd~~~~---~~~~--~~~~------~~~~~i~~v~~s~~~~~l~~g~~d  279 (326)
                      .       .+. ...+++-+..   .++++|.++...   ..+.  +..+      ....--.++..++.-..++.-+.-
T Consensus       208 g-------~~~-~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~  279 (494)
T 1bpo_A          208 G-------NAE-ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  279 (494)
T ss_dssp             T-------CSS-EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT
T ss_pred             C-------CCC-CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecC
Confidence            0       000 0113333333   378999997532   1111  1111      112234566888888889988999


Q ss_pred             CcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~  310 (326)
                      |.+++||+.++.+++.-+-- ..+|..-+-+
T Consensus       280 G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~  309 (494)
T 1bpo_A          280 GYIHLYDLETGTCIYMNRIS-GETIFVTAPH  309 (494)
T ss_dssp             SEEEEEETTTCCEEEEEECC-SSCEEEEEEE
T ss_pred             ceEEEEecccceeeeeeccc-CCceEEeccc
Confidence            99999999999998765532 4455444443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.35  E-value=0.044  Score=44.70  Aligned_cols=232  Identities=9%  Similarity=-0.032  Sum_probs=123.1

Q ss_pred             cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCC
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE  102 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  102 (326)
                      ...|+..++.+.......++.      ......++.|+.. .+.+..+-..++.|..+++..+.....+..       ..
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~------~~~~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-------~~   77 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG------GLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVV-------SG   77 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE------EEEEEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCCCEEEE-------EC
T ss_pred             cCeEEEEECCCCceEEEEEec------CCCccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCceEEEEc-------CC
Confidence            567888888765111111111      1112334444332 233455556678888888865432111111       11


Q ss_pred             CCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec-
Q 020454          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-  181 (326)
Q Consensus       103 ~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-  181 (326)
                      -....++++...       .+..+++-...+.|.+.+++...         .+..-.........++++|.+..|+... 
T Consensus        78 l~~p~glavd~~-------~g~ly~~d~~~~~I~~~~~dG~~---------~~~l~~~~~~~P~giavdp~~g~ly~td~  141 (318)
T 3sov_A           78 LLSPDGLACDWL-------GEKLYWTDSETNRIEVSNLDGSL---------RKVLFWQELDQPRAIALDPSSGFMYWTDW  141 (318)
T ss_dssp             CSCCCEEEEETT-------TTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred             CCCccEEEEEcC-------CCeEEEEECCCCEEEEEECCCCc---------EEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            123344554220       12334444556777777755321         1111112334678899998765554444 


Q ss_pred             -CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE-eecCC
Q 020454          182 -KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRET  259 (326)
Q Consensus       182 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~  259 (326)
                       ..+.|...++...........      .+   .+..++++.|. ++.++++-+..+.|..+|+... . ...+ .....
T Consensus       142 ~~~~~I~r~~~dG~~~~~~~~~------~l---~~Pnglavd~~-~~~lY~aD~~~~~I~~~d~dG~-~-~~~~~~~~~~  209 (318)
T 3sov_A          142 GEVPKIERAGMDGSSRFIIINS------EI---YWPNGLTLDYE-EQKLYWADAKLNFIHKSNLDGT-N-RQAVVKGSLP  209 (318)
T ss_dssp             SSSCEEEEEETTSCSCEEEECS------SC---SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-S-CEEEECSCCS
T ss_pred             CCCCEEEEEEcCCCCeEEEEEC------CC---CCccEEEEecc-CCEEEEEECCCCEEEEEcCCCC-c-eEEEecCCCC
Confidence             357788888764322211111      01   34678999984 4546666677889999998743 2 2222 22334


Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      ....+++.. +..+++-...+.|..++..+++....+.
T Consensus       210 ~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          210 HPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            556777743 3344465667889999998776554443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.33  E-value=0.044  Score=44.35  Aligned_cols=100  Identities=14%  Similarity=-0.025  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCEE-EEecCCCeEEEEECCC-cee--eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEE
Q 020454          165 IAFSKVDISEKFS-LFGGKGVEVNVWDLDK-CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (326)
Q Consensus       165 v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~  240 (326)
                      ...+  +++++.| ++-...+.|..||+.. ++.  ...+..       +   .....+++.+  +++++++....+.|.
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-------~---~~P~gi~vd~--dG~l~va~~~~~~V~  236 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-------Q---TNIDDFAFDV--EGNLYGATHIYNSVV  236 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-------S---CCCSSEEEBT--TCCEEEECBTTCCEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-------c---CCCCCeEECC--CCCEEEEeCCCCeEE
Confidence            4455  6677655 4455678899999874 221  000000       0   1234667776  566777777788999


Q ss_pred             EEeCCCCCCcee--EEeecCCceEEEEec---CCCCeEEEEcCCC
Q 020454          241 LYDTSAQRRPVM--SFDFRETPIKAVAEE---PDSFNIYIGNGSG  280 (326)
Q Consensus       241 iwd~~~~~~~~~--~~~~~~~~i~~v~~s---~~~~~l~~g~~dg  280 (326)
                      ++|.. + +...  .+...-...++++|.   |+++.|++.+..+
T Consensus       237 ~~~~~-G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          237 RIAPD-R-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECTT-C-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EECCC-C-CEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            99976 4 3211  222333567899998   8888887666543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.33  E-value=0.032  Score=53.80  Aligned_cols=220  Identities=13%  Similarity=0.142  Sum_probs=122.0

Q ss_pred             cccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEe--eeCCCCCeEEEEe----------cCCcEEEEeccccceeee
Q 020454           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI--DDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVA   90 (326)
Q Consensus        23 ~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~   90 (326)
                      .+.|++.|..+.     +....+.- +..+.+++++.  .......+|++|.          ..|.|.+|++.++++...
T Consensus       806 ~s~i~lidp~t~-----~~i~~~~l-~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv  879 (1158)
T 3ei3_A          806 VHNLLIIDQHTF-----EVLHAHQF-LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV  879 (1158)
T ss_dssp             EEEEEEEETTTC-----CEEEEEEC-CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEeCCCC-----eEEEEEeC-CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence            356777776544     33333321 12233333222  1223456899987          458899999975554332


Q ss_pred             ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEE
Q 020454           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  170 (326)
                      ...       .-++++.++..++          ++++++ ....+++|++....        .++ .+...-..+..+..
T Consensus       880 ~~~-------~v~g~v~al~~~~----------g~Lla~-ig~~l~vy~l~~~~--------~L~-~~~~~~~~i~~~~l  932 (1158)
T 3ei3_A          880 AEK-------EVKGAVYSMVEFN----------GKLLAS-INSTVRLYEWTTEK--------ELR-TECNHYNNIMALYL  932 (1158)
T ss_dssp             EEE-------EESSCEEEEEEET----------TEEEEE-ETTEEEEEEECTTS--------CEE-EEEEECCCSCEEEE
T ss_pred             EEE-------EcCCcCEEEeeeC----------CEEEEE-cCCEEEEEECCCCc--------eEE-EEeeccccEEEEEE
Confidence            222       2347888888754          455554 45889999987543        222 11111112322233


Q ss_pred             cCCCCEEEEecCCCeEEEE--ECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454          171 DISEKFSLFGGKGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~  248 (326)
                      ...+++++.|..-..|.++  +....+.....+.        ..+.|++++.|.-.  . .++.+..+|.+.++......
T Consensus       933 ~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D--------~~~~~vta~~~ld~--~-t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A          933 KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARD--------FNPNWMSAVEILDD--D-NFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp             EEETTEEEEEESSBCEEEEEEETTTTEEEEEEEC--------CSCBCEEEEEEEET--T-EEEEEETTSEEEEEEECTTC
T ss_pred             eccCCEEEEEEhhheEEEEEEEcCCCeEEEEEee--------cccccEEEEEEEcc--C-cEEEEcCCCcEEEEecCCCC
Confidence            3356888888777676664  4433443333322        13578999999853  2 78889999999988754310


Q ss_pred             -------CceeEEeec-CCceEEEE---ecCC---------CCeEEEEcCCCcEEEEE
Q 020454          249 -------RPVMSFDFR-ETPIKAVA---EEPD---------SFNIYIGNGSGDLASVD  286 (326)
Q Consensus       249 -------~~~~~~~~~-~~~i~~v~---~s~~---------~~~l~~g~~dg~v~iwd  286 (326)
                             +....-..| ...|+++.   +.+.         ...++-|+.+|.|.++-
T Consensus      1002 ~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A         1002 TTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             CSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred             CCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence                   111111222 34566665   3332         23467778888887764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.23  E-value=0.024  Score=46.06  Aligned_cols=155  Identities=12%  Similarity=0.155  Sum_probs=95.7

Q ss_pred             CceEEEEe-cCCcEEEEEccccccccccccceEEEEEccC-------CCceEEEEE---cCCCCEEEEec----------
Q 020454          123 SRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCA-------SGTIAFSKV---DISEKFSLFGG----------  181 (326)
Q Consensus       123 ~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~sg~----------  181 (326)
                      ++.++.++ ..+.|..|+.....        ...+ ....       ...+..+.+   +|+++++++..          
T Consensus        24 ~g~~~vs~l~~g~V~~~~~~~~~--------~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           24 RQVFYQSNLYKGRIEVYNPKTQS--------HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCC--------EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CCEEEEEeccCCEEEEEcCCCCe--------EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            35666665 68999989864221        1112 1211       114679999   68877777533          


Q ss_pred             ---CCCeEEEEECC---CceeeeeecCC--CCC--CCCcCCCCceeeeEEeecCCCcEEEEEeCC-CeEEEEeCCCCCCc
Q 020454          182 ---KGVEVNVWDLD---KCEKIWTAKPP--PKN--SLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRP  250 (326)
Q Consensus       182 ---~d~~i~iwd~~---~~~~~~~~~~~--~~~--~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-g~v~iwd~~~~~~~  250 (326)
                         .+..|..||+.   +++.++.+.-.  ...  ...-........++..+  +|+..++++.- +.|...+....  .
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~--~GnaYVt~s~~~~~I~rV~pdG~--~  170 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR--DGNSYVAFALGMPAIARVSADGK--T  170 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT--TSCEEEEEEESSCEEEEECTTSC--C
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC--CCCEEEeCCCCCCeEEEEeCCCC--E
Confidence               26779999999   77776654311  000  00000012355677765  67788888877 88777777633  2


Q ss_pred             eeEEeec------CCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          251 VMSFDFR------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       251 ~~~~~~~------~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      +..+...      ....+.|+++|+|+.|++....|.+..+|+++.
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            3333211      123679999999999998877999999998853

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.19  E-value=0.066  Score=43.51  Aligned_cols=152  Identities=12%  Similarity=0.081  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEE---eecCCCcEEEEEe-----
Q 020454          165 IAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAF---LSIDDHRKFVAGT-----  234 (326)
Q Consensus       165 v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~~l~~~~-----  234 (326)
                      -.+.+|++....|..++ ..++|..||...+..... ........   .....+.++.+   .|  +++++++..     
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g---~~~~~~sGl~~~~~D~--~grL~vv~~~~~af   89 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNG---DGEQQMSGLSLLTHDN--SKRLFAVMKNAKSF   89 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSS---CCSEEEEEEEESSSSS--CCEEEEEEEETTTT
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccC---CCcceeeEEEEeccCC--CCcEEEEEcccccc
Confidence            44678887665555555 789999999875533222 21111000   00123578888   45  355665433     


Q ss_pred             --------CCCeEEEEeCC---CCCCceeEEee-------------cCCceEEEEecCCCCeEEEEcCC-CcEEEEECCC
Q 020454          235 --------NDHQVRLYDTS---AQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRT  289 (326)
Q Consensus       235 --------~dg~v~iwd~~---~~~~~~~~~~~-------------~~~~i~~v~~s~~~~~l~~g~~d-g~v~iwd~~~  289 (326)
                              .+..|..||+.   ++ +.+.....             .......++..++|+..++++.. +.|..++...
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             cccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                    26789999998   66 34444432             11247899999999999988888 8888887654


Q ss_pred             CeEEEEEc--c---eecceEEEEEECCCCCEEEEeccCc
Q 020454          290 GKLLGCFI--G---KCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       290 ~~~~~~~~--~---~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      . .+..+-  .   ...-..+.|+++|++..|+....+|
T Consensus       169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g  206 (334)
T 2p9w_A          169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR  206 (334)
T ss_dssp             C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred             C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence            3 222221  1   1022366999999998888775554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.12  E-value=0.059  Score=48.84  Aligned_cols=71  Identities=20%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             EEEEEcCCCCEEEEecC-CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CC-----Ce
Q 020454          166 AFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-----HQ  238 (326)
Q Consensus       166 ~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~d-----g~  238 (326)
                      ..+.+..++++++.||. +..+.+||..+.+-.... .       +..+.+-.++...+  ++++++.|+ .+     ..
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~-------~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~  315 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-D-------MQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKN  315 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-C-------CSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCC
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-C-------CCccccccceEEec--CCeEEEEeCcccCCccccc
Confidence            34667788999999984 467999998876432221 1       11122222334443  455777776 33     46


Q ss_pred             EEEEeCCC
Q 020454          239 VRLYDTSA  246 (326)
Q Consensus       239 v~iwd~~~  246 (326)
                      +.+||+.+
T Consensus       316 ~e~yd~~t  323 (656)
T 1k3i_A          316 GEVYSPSS  323 (656)
T ss_dssp             EEEEETTT
T ss_pred             ceEeCCCC
Confidence            88888764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.10  E-value=0.17  Score=46.74  Aligned_cols=203  Identities=11%  Similarity=0.021  Sum_probs=109.8

Q ss_pred             EEEEeeeCCCCCeEEEEecCCcEEEEecccc----ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEE
Q 020454           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNG----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTC  129 (326)
Q Consensus        55 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~  129 (326)
                      .++.++.. .+.++++-...+.|+.+++...    .....+.        .......+|++..        .. ..+++-
T Consensus       427 ~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--------~~l~~P~GLAvD~--------~~~~LY~tD  489 (791)
T 3m0c_C          427 VALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--------RDIQAPDGLAVDW--------IHSNIYWTD  489 (791)
T ss_dssp             EEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEEC--------SSCSCCCEEEEET--------TTTEEEEEE
T ss_pred             EEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEe--------cCCCCcceeeeee--------cCCcEEEEe
Confidence            34444332 2334555556678888887532    1111111        1113344566432        22 344555


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec--CCCeEEEEECCCceeeeeecCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNS  207 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~  207 (326)
                      ...+.|.+.+++...         .++.-.........|+++|.+.+|+...  ..+.|...++........+...    
T Consensus       490 ~~~~~I~v~~ldG~~---------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~----  556 (791)
T 3m0c_C          490 SVLGTVSVADTKGVK---------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN----  556 (791)
T ss_dssp             TTTTEEEEEETTSSS---------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS----
T ss_pred             cCCCeEEEEeCCCCe---------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC----
Confidence            566777777765322         1111112234678999999765554443  2367888888754433222211    


Q ss_pred             CCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ec--CCceEEEEecCCCCeEE-EEcCCCcEE
Q 020454          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FR--ETPIKAVAEEPDSFNIY-IGNGSGDLA  283 (326)
Q Consensus       208 ~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~--~~~i~~v~~s~~~~~l~-~g~~dg~v~  283 (326)
                        +   .+..++++.+. .++++++-...+.|..+|+... . ...+. ..  -.....|++.  +.+|+ +-...+.|.
T Consensus       557 --l---~~P~GLavD~~-~~~LYwaD~~~~~I~~~d~dG~-~-~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~  626 (791)
T 3m0c_C          557 --I---QWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  626 (791)
T ss_dssp             --C---SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-S-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             --C---CCceEEEEecC-CCeEEEEeCCCCcEEEEecCCC-c-eEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence              1   45778999875 4545566567789999998754 2 23332 21  1234466663  44555 545667899


Q ss_pred             EEECCCCeEEEEEc
Q 020454          284 SVDIRTGKLLGCFI  297 (326)
Q Consensus       284 iwd~~~~~~~~~~~  297 (326)
                      ..|..+|+.+..+.
T Consensus       627 ~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          627 SANRLTGSDVNLLA  640 (791)
T ss_dssp             EEETTTCCCCEEEE
T ss_pred             EEeCCCCcceEEee
Confidence            99988876655554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.07  E-value=0.097  Score=43.26  Aligned_cols=170  Identities=12%  Similarity=0.088  Sum_probs=96.3

Q ss_pred             cCCcEEEEEccccccccccccceEEEEEccC------CCceEEEEEcC--CCC--EEEEecC--CCeEEEEECCCc--ee
Q 020454          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDI--SEK--FSLFGGK--GVEVNVWDLDKC--EK  196 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~--~~~--~l~sg~~--d~~i~iwd~~~~--~~  196 (326)
                      .+|.|.++|++....       ..+.+....      .-....+.+.+  ++.  ++++-..  +.+|.+|++...  ..
T Consensus        81 ~~G~I~~~d~~~~~~-------~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~  153 (355)
T 3sre_A           81 KSGKILLMDLNEKEP-------AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL  153 (355)
T ss_dssp             -CCEEEEEETTSSSC-------CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE
T ss_pred             CCCeEEEEecCCCCC-------ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEE
Confidence            688899998764221       111222211      12456666654  342  4444333  567888887653  22


Q ss_pred             --eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-----------------CCCeEEEEeCCCCCCceeEEeec
Q 020454          197 --IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----------------NDHQVRLYDTSAQRRPVMSFDFR  257 (326)
Q Consensus       197 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~  257 (326)
                        +.......        -...+.+.+.+  ++..+++..                 ..|.|.-+|..   + +..+...
T Consensus       154 ~~~~~~~g~~--------~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~  219 (355)
T 3sre_A          154 LHLKTIRHKL--------LPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEG  219 (355)
T ss_dssp             EEEEEECCTT--------CSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEE
T ss_pred             EEEeccccCC--------CCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecC
Confidence              22222211        13467888887  454555543                 12556666653   2 2233223


Q ss_pred             CCceEEEEecCCCCeEEEEc-CCCcEEEEECCC-CeE--EEEEcceecceEEEEEECC-CCCEEEEeccCc
Q 020454          258 ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT-GKL--LGCFIGKCSGSIRSIARHP-TLPIIASCGFLE  323 (326)
Q Consensus       258 ~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~-~~~--~~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~  323 (326)
                      -..-+.++|+||+++|+.+. ..+.|..|++.. ++.  ...+.  ..+....+++.+ +|.+.+++..++
T Consensus       220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva~~~~g  288 (355)
T 3sre_A          220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVGCHPNG  288 (355)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEEEESCH
T ss_pred             CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEEecCCc
Confidence            34568999999998887554 578899999863 433  22342  256678899999 588877665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.05  E-value=0.096  Score=42.95  Aligned_cols=217  Identities=12%  Similarity=0.137  Sum_probs=118.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE-EEEeeeCCC-CCeEEE-Eec--CCcEEEEec--cccce
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL-AASIDDSQN-DPLLAV-ARK--NGLTDILNP--LNGDL   87 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~-g~~--dg~i~i~~~--~~~~~   87 (326)
                      .+++..+..+-+.|+|+.+.      +.+.... .....+- .-.+.-... -.++++ -..  +++|.+|++  .++++
T Consensus        41 s~ii~t~k~~gL~Vydl~G~------~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGK------MLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSC------EEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             cEEEEEcCCCCEEEEcCCCc------EEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            44677777889999999543      4444443 2222221 111111110 012233 333  578999966  34442


Q ss_pred             eeeecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (326)
                       ..+.....+ +......+.+++.+....     .. -++++...+|.+..|++...... ......++.+.+  ...+.
T Consensus       114 -~~i~~~~~p-v~t~~~~pyGlcly~~~~-----~g~~yafV~~k~G~~~q~~l~~~~~g-~~~~~lVR~f~l--gsq~E  183 (355)
T 3amr_A          114 -QSMTDPDHP-IATAINEVYGFTLYHSQK-----TGKYYAMVTGKEGEFEQYELKADKNG-YISGKKVRAFKM--NSQTE  183 (355)
T ss_dssp             -EECSCTTSC-EECCCSSCCCEEEEECTT-----TCCEEEEEECSSSEEEEEEEEECTTS-CEEEEEEEEEEC--SSCEE
T ss_pred             -eeccccccC-cCCCCCCeeEEEEEecCC-----CCcEEEEEECCCCeEEEEEEEeCCCC-cccceEEEEecC--CCCcc
Confidence             333211000 001113455566544211     12 25888888999999988642210 012345666666  45788


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECC-----CceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEE-EEeCCCeE
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLD-----KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFV-AGTNDHQV  239 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~-~~~~dg~v  239 (326)
                      .+..++....|+.+-++..|..++.+     +.+.+.......       ....+..++.-+..+++ +|+ ++-.+.+.
T Consensus       184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-------l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-------LTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-------BCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-------cccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            99999988899999998777777755     233443322110       01246788876543333 444 44467899


Q ss_pred             EEEeCCCCCCceeEEe
Q 020454          240 RLYDTSAQRRPVMSFD  255 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~  255 (326)
                      .+||.....+.+..|.
T Consensus       257 ~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          257 AIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEESSTTCCEEEEEE
T ss_pred             EEEECCCCCcEEEEEE
Confidence            9999973335666775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.05  E-value=0.11  Score=43.78  Aligned_cols=231  Identities=10%  Similarity=0.017  Sum_probs=120.7

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc----eeeeecccCCC
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDS   97 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~----~~~~~~~~~~~   97 (326)
                      ....|+..++.+.  ....+   ..   ......++.++.. .+.+.++-..++.|+.+++....    ....+.     
T Consensus        90 ~~~~I~~i~l~~~--~~~~~---~~---~~~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-----  155 (400)
T 3p5b_L           90 NRHEVRKMTLDRS--EYTSL---IP---NLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----  155 (400)
T ss_dssp             ETTEEEEECTTSC--SCEEE---EC---SCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEEC-----
T ss_pred             ccceeEEEccCCc--ceeEe---cc---ccCcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEe-----
Confidence            3456677776654  11111   11   1223344555432 23344455567888888875421    111111     


Q ss_pred             CCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEE
Q 020454           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (326)
Q Consensus        98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  177 (326)
                         .......++++...       .+..+++-...+.|.+.+++...        ...+.. ........++++|.+.+|
T Consensus       156 ---~~~~~p~glavD~~-------~~~lY~~d~~~~~I~~~~~~g~~--------~~~l~~-~~~~~P~~iavdp~~g~l  216 (400)
T 3p5b_L          156 ---RDIQAPDGLAVDWI-------HSNIYWTDSVLGTVSVADTKGVK--------RKTLFR-ENGSKPRAIVVDPVHGFM  216 (400)
T ss_dssp             ---SSCSCEEEEEEETT-------TTEEEEEETTTTEEEEECTTTCS--------EEEEEE-CSSCCEEEEEEETTTTEE
T ss_pred             ---CCCCCcccEEEEec-------CCceEEEECCCCeEEEEeCCCCc--------eEEEEe-CCCCCcceEEEecccCeE
Confidence               11234555664320       12334444556677766654321        111122 223457899999976555


Q ss_pred             EEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          178 LFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       178 ~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                      +...  ..+.|...++...........         .-.+..++++.|. +++++++-+..+.|..+|+... . ...+.
T Consensus       217 y~td~~~~~~I~~~~~dG~~~~~~~~~---------~l~~P~glavd~~-~~~lY~aD~~~~~I~~~d~dG~-~-~~~~~  284 (400)
T 3p5b_L          217 YWTDWGTPAKIKKGGLNGVDIYSLVTE---------NIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG-N-RKTIL  284 (400)
T ss_dssp             EEEECSSSCCEEEEETTSCSCEEEECS---------SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC-C-CEEEE
T ss_pred             EEEeCCCCCEEEEEeCCCCccEEEEEC---------CCCceEEEEEEeC-CCEEEEEECCCCEEEEEeCCCC-c-cEEEE
Confidence            4443  246788888865433222211         0145778999975 4445566667889999998754 2 22332


Q ss_pred             e---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          256 F---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       256 ~---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      .   .-.....+++. .+..+++-...+.|..+|..+|+.+..+..
T Consensus       285 ~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          285 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             ECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred             eCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence            2   12344566763 333444666678899999888876665553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.02  E-value=0.13  Score=43.93  Aligned_cols=146  Identities=8%  Similarity=-0.081  Sum_probs=85.9

Q ss_pred             CceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEE
Q 020454          163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR  240 (326)
Q Consensus       163 ~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~  240 (326)
                      .....++++| ++.+.++-..++.|+.+|..++.....+.....       ..+-..++|+|  +++ ++++-...+.|+
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-------~~~~~~ia~dp--dG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-------KGSNFHIVWHP--TGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-------CSSCEEEEECT--TSSEEEEEETTTTEEE
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-------CCCcccEEEeC--CCCEEEEEeCCCCEEE
Confidence            3456788999 666666666778899999886655222211111       12234689988  454 556666788999


Q ss_pred             EEeCCCCCCc---eeEEeec---------------CCceEEEEe---------cCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454          241 LYDTSAQRRP---VMSFDFR---------------ETPIKAVAE---------EPDSFNIYIGNGSGDLASVDIRTGKLL  293 (326)
Q Consensus       241 iwd~~~~~~~---~~~~~~~---------------~~~i~~v~~---------s~~~~~l~~g~~dg~v~iwd~~~~~~~  293 (326)
                      .++.......   ...+...               -.....+++         .++|++.++-...+.|+.++. +|...
T Consensus       299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~  377 (433)
T 4hw6_A          299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT  377 (433)
T ss_dssp             EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred             EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence            9886521111   1122211               113566888         677776667667788999985 56544


Q ss_pred             EEEccee-----------------cceEEEEEEC-CCCCEEEEe
Q 020454          294 GCFIGKC-----------------SGSIRSIARH-PTLPIIASC  319 (326)
Q Consensus       294 ~~~~~~~-----------------~~~v~~l~~~-p~~~~l~s~  319 (326)
                      . +.+.-                 -..-..|+++ +++.++++=
T Consensus       378 t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD  420 (433)
T 4hw6_A          378 T-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGD  420 (433)
T ss_dssp             E-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred             E-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEe
Confidence            3 32210                 1136689999 566555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.00  E-value=0.1  Score=42.46  Aligned_cols=205  Identities=8%  Similarity=-0.016  Sum_probs=109.1

Q ss_pred             eEEEEecCCcEEEEeccccc--eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccc
Q 020454           67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVT  143 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~  143 (326)
                      +|+.+. ...|+.+++....  ....+..         .....++.+..        .++.| ++-...+.|..++++..
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~---------~~~~~~ld~d~--------~~~~lyw~D~~~~~I~r~~~~g~   67 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGG---------LEDAAAVDFVF--------SHGLIYWSDVSEEAIKRTEFNKT   67 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEE---------EEEEEEEEEEG--------GGTEEEEEETTTTEEEEEETTSS
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecC---------CCccEEEEEEe--------CCCEEEEEECCCCcEEEEEccCC
Confidence            455554 4778899986543  1111111         12344566533        22333 34445566766665432


Q ss_pred             ccccccccceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEe
Q 020454          144 KVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (326)
                      ..     ...+  .. ..-.....+++++. ++++++-...+.|.++++............      +   ....++++.
T Consensus        68 ~~-----~~~~--~~-~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~------~---~~P~giavd  130 (318)
T 3sov_A           68 ES-----VQNV--VV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE------L---DQPRAIALD  130 (318)
T ss_dssp             SC-----CCEE--EE-ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------C---SSEEEEEEE
T ss_pred             Cc-----eEEE--Ec-CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC------C---CCccEEEEe
Confidence            10     0111  11 11234567888864 455566566788999998754322221110      1   335688898


Q ss_pred             ecCCCcEEEEEe-CCCeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCeEEEEEcce
Q 020454          223 SIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK  299 (326)
Q Consensus       223 p~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~~~~~~~~~  299 (326)
                      |. .+.++.+-. ..+.|...++... . ...+ ...-..-..++++|++..|+.+ +..+.|..+|+..........+.
T Consensus       131 p~-~g~ly~td~~~~~~I~r~~~dG~-~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~  207 (318)
T 3sov_A          131 PS-SGFMYWTDWGEVPKIERAGMDGS-S-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS  207 (318)
T ss_dssp             GG-GTEEEEEECSSSCEEEEEETTSC-S-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC
T ss_pred             CC-CCEEEEEecCCCCEEEEEEcCCC-C-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC
Confidence            85 354444442 3578888888743 2 2222 2223456899999977777655 45678999998743222222222


Q ss_pred             ecceEEEEEEC
Q 020454          300 CSGSIRSIARH  310 (326)
Q Consensus       300 ~~~~v~~l~~~  310 (326)
                       ......|++.
T Consensus       208 -~~~P~glav~  217 (318)
T 3sov_A          208 -LPHPFALTLF  217 (318)
T ss_dssp             -CSCEEEEEEE
T ss_pred             -CCCceEEEEe
Confidence             3334455554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.007  Score=49.63  Aligned_cols=199  Identities=10%  Similarity=0.048  Sum_probs=106.3

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE--ecCCcEEEEEccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVTK  144 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~--~~~g~v~i~~~~~~~  144 (326)
                      ++++++.||.|.-+|..+|+.+-.+..-       ...++..... +    . ...++.++.+  +.||.++.++...  
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-------~~~p~~~~~~-~----~-~~~~~~~~vv~p~~dG~l~a~~~~~--   76 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-------NFQPLIEIQE-P----S-RLETYETLIIEPFGDGNIYYFNAHQ--   76 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG-------GSCCSEECCC-S----C-TTTSSEEEEECCSTTTEEEEEETTT--
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC-------ccCCcEEecC-C----c-cccCCcEEEEEECCCCEEEEEECCC--
Confidence            5899999999999999999988887651       0012222110 0    0 0012344444  5899988887542  


Q ss_pred             cccccccceEEEEEccCCCceE--EEEEc-----------CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC-C-
Q 020454          145 VSAESSCSTVKSWNVCASGTIA--FSKVD-----------ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-G-  209 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~--~~~~~-----------~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~-  209 (326)
                             + ...|.......+.  -+...           ..+..+++|+.++.+...|+++|+.++.......... . 
T Consensus        77 -------G-~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  148 (339)
T 2be1_A           77 -------G-LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS  148 (339)
T ss_dssp             -------E-EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----
T ss_pred             -------C-cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc
Confidence                   1 2234332211110  01110           1456788999999999999999999998765321100 0 


Q ss_pred             -cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec---CCceE-----EEEecCCCCeEEEEcCCC
Q 020454          210 -IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR---ETPIK-----AVAEEPDSFNIYIGNGSG  280 (326)
Q Consensus       210 -~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~i~-----~v~~s~~~~~l~~g~~dg  280 (326)
                       -.....+.  .+.....+..++.+..+..+.+.+ +++ + +..++..   ...+.     .-..+.++.+ +.++.||
T Consensus       149 ~~e~~~~~~--d~~~d~~~~~v~ig~~~y~v~~~~-~sG-~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg  222 (339)
T 2be1_A          149 QSVDCSPEE--KIKLQECENMIVIGKTIFELGIHS-YDG-A-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDK  222 (339)
T ss_dssp             ------------------CCEEEEEEEEEECEECC-TTS-C-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTT
T ss_pred             ccccccccc--ccccccCCCeEEEecceEEEEEEC-CCC-C-eEEEecccccccccccccccccccccCCcE-EEECCCC
Confidence             00000000  010001123677777777777777 444 2 2222110   00000     0011234666 4578899


Q ss_pred             cEEEEECCCCeEEE
Q 020454          281 DLASVDIRTGKLLG  294 (326)
Q Consensus       281 ~v~iwd~~~~~~~~  294 (326)
                      .|.-+|..+|+.+.
T Consensus       223 ~v~A~d~~~G~~~W  236 (339)
T 2be1_A          223 SLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEECSTTCCEEE
T ss_pred             EEEEEECCCCcEEE
Confidence            99999999888765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.063  Score=46.46  Aligned_cols=147  Identities=12%  Similarity=0.001  Sum_probs=85.0

Q ss_pred             ceEEEEEcCC-C-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE-------eecCCCcEEEEEe
Q 020454          164 TIAFSKVDIS-E-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF-------LSIDDHRKFVAGT  234 (326)
Q Consensus       164 ~v~~~~~~~~-~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~~l~~~~  234 (326)
                      ....|+++|. + +++++-...+.|++.|+..+............      ......++|       .+  +++.|++..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~------~~~p~~ia~~~~~~~~d~--~G~~lyvad  211 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP------TNRIRSIAFNKKIEGYAD--EAEYMIVAI  211 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS------CSBEEEEEECCCBTTTBC--TTCEEEEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc------cCCCcEEEEeecccccCC--CCCEEEEEe
Confidence            4678999984 4 45555444567999999887665544321111      134678888       77  454455554


Q ss_pred             CCC-------eEEEEeCCCCCCce-----eEEeecCCceEEEEecCCCCe-EEEEcCCCcEEEEECC-------CCeE--
Q 020454          235 NDH-------QVRLYDTSAQRRPV-----MSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIR-------TGKL--  292 (326)
Q Consensus       235 ~dg-------~v~iwd~~~~~~~~-----~~~~~~~~~i~~v~~s~~~~~-l~~g~~dg~v~iwd~~-------~~~~--  292 (326)
                      ..+       .|.+++........     ..+... .....++++|++.. +++-..++.|..+|+.       ++..  
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence            332       36677644311111     223222 23457789996545 4566677889999997       5543  


Q ss_pred             ---------EEE-EcceecceEEEEEECCCCCEEEEe
Q 020454          293 ---------LGC-FIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       293 ---------~~~-~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                               ... +.......-..|+|+|++++|..+
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence                     112 221113346789999999854443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.90  E-value=0.26  Score=45.54  Aligned_cols=189  Identities=10%  Similarity=-0.041  Sum_probs=106.0

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~  145 (326)
                      +|+.+ ....|+..++...+....+..         ...+.++.+..        ..+.| ++-...+.|+.++++....
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~---------~~~~~gl~~d~--------~~~~lY~sD~~~~~I~~~~l~g~~~  458 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEV--------ASNRIYWSDLSQRMICSTQLDRAHG  458 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEECS---------CSSEEEEEEET--------TTTEEEEEETTTTEEEEEEC-----
T ss_pred             ccccc-cccceeEeeccCCcceeeecC---------CCceEEEeecc--------cCCeeEEeeccceeEEEEeccCCCC
Confidence            44444 346688888865554333221         14556677543        23344 4444556777777653210


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                      .    .....+.. ........|++++.+ +++++-...+.|.+.++........+...      +   ....+|++.|.
T Consensus       459 ~----~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~------l---~~P~gIaVDp~  524 (791)
T 3m0c_C          459 V----SSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------G---SKPRAIVVDPV  524 (791)
T ss_dssp             -------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT------T---CCEEEEEEETT
T ss_pred             C----cceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC------C---CCcceEEEecC
Confidence            0    00111221 123456678888766 55556667789999998754432222211      1   23668899885


Q ss_pred             CCCcEEEEEeCC-CeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCC
Q 020454          225 DDHRKFVAGTND-HQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG  290 (326)
Q Consensus       225 ~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~  290 (326)
                       .+.++++-... +.|...++... . ...+. ..-.....|++++.+..|+.+. ..+.|..+++...
T Consensus       525 -~g~LYwtD~g~~~~I~~~~~dG~-~-~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          525 -HGFMYWTDWGTPAKIKKGGLNGV-D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             -TTEEEEEECSSSCEEEEEETTSC-C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             -CCCEEEecCCCCCeEEEEecCCC-c-eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence             35455554333 78888888743 2 33332 2335678999998777777554 4567999998654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.87  E-value=0.19  Score=43.51  Aligned_cols=209  Identities=10%  Similarity=0.045  Sum_probs=106.9

Q ss_pred             EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeec-------ccccccccCCCCceEEE
Q 020454           56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHL-------FKRQREESSSRSRTLLT  128 (326)
Q Consensus        56 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-------~~~~~~~~~~~~~~l~~  128 (326)
                      .+++++...+.++++-...+.|+++|+.++.+......-     ...-....++++       ..        +...|++
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----~~~~~~p~~ia~~~~~~~~d~--------~G~~lyv  209 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-----TIPTNRIRSIAFNKKIEGYAD--------EAEYMIV  209 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-----TSSCSBEEEEEECCCBTTTBC--------TTCEEEE
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-----ccccCCCcEEEEeecccccCC--------CCCEEEE
Confidence            344443222334444444578999999777765443320     011234566665       33        3445666


Q ss_pred             EecCC-c------EEEEEcccccccccccc-ceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECC-------
Q 020454          129 CTTKG-K------ASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLD-------  192 (326)
Q Consensus       129 ~~~~g-~------v~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~-------  192 (326)
                      ....+ .      +.+.+...........+ ..+..+     .....++++|+ +.++++-..++.|..+|+.       
T Consensus       210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~  284 (496)
T 3kya_A          210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK  284 (496)
T ss_dssp             EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred             EeCCCCCcccCceEEEEecCCCCceeecccceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence            65544 2      44444222111111011 122222     24457788995 5666666778889999987       


Q ss_pred             Ccee-----------eeeecCCCCCCCCcCCCCceeeeEEeecCCCc-EEEEEeCCCeEEEEeCCCCCCce---eEEeec
Q 020454          193 KCEK-----------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPV---MSFDFR  257 (326)
Q Consensus       193 ~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~  257 (326)
                      ++..           ...+..       +....+.+.++|+|  +++ ++++-+..+.|+.++.......+   ..+.+.
T Consensus       285 tg~~~tp~~~~~~g~~~~l~~-------~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          285 NGGSWDPIVKNNPNTFKQLFT-------IADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             TTCCCCCBGGGCTTTEEEEEE-------CSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             CceeecccccccccccceeEe-------cCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence            3432           001100       11123567899998  455 45666778899997654221111   122221


Q ss_pred             ---C------------CceE-EEEec-------CCCCeEEEEcCCCcEEEEECCCCeE
Q 020454          258 ---E------------TPIK-AVAEE-------PDSFNIYIGNGSGDLASVDIRTGKL  292 (326)
Q Consensus       258 ---~------------~~i~-~v~~s-------~~~~~l~~g~~dg~v~iwd~~~~~~  292 (326)
                         .            .... .++..       +++.++++=..++.|+.++ .+|..
T Consensus       356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v  412 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV  412 (496)
T ss_dssp             TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE
T ss_pred             CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE
Confidence               0            1123 44444       4566666666778899998 45643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.84  E-value=0.14  Score=43.69  Aligned_cols=143  Identities=16%  Similarity=0.042  Sum_probs=82.0

Q ss_pred             ceEEEEEcCC--CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC---C-
Q 020454          164 TIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H-  237 (326)
Q Consensus       164 ~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d---g-  237 (326)
                      ....++++|+  +..|+.+...+.|+.+|..+++.......          ......+++.+  +++++++....   . 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~----------~~~P~giavd~--dG~lyVad~~~~~~~~  207 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN----------IGQCADVNFTL--NGDMVVVDDQSSDTNT  207 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC----------CSCEEEEEECT--TCCEEEEECCSCTTSE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC----------CCCccEEEECC--CCCEEEEcCCCCcccc
Confidence            4568899984  34444444448899999987765544321          13467888887  45555554321   1 


Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEecC-CCCeEEEEcCCCcEEEEECCCCeEEEEE-cceecceEEEEEECCCCCE
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPI  315 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~  315 (326)
                      .+..++..........+. .-.....++++| +|.+.++-..++.|+.+|..+++....+ .......-..|+|+|+++.
T Consensus       208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             eEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            233344332211111222 224456788999 5655556556788999999877763332 2110222346999999985


Q ss_pred             EEEe
Q 020454          316 IASC  319 (326)
Q Consensus       316 l~s~  319 (326)
                      |..+
T Consensus       287 LYva  290 (433)
T 4hw6_A          287 AYII  290 (433)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.83  E-value=0.019  Score=52.42  Aligned_cols=182  Identities=9%  Similarity=-0.046  Sum_probs=94.4

Q ss_pred             CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccccccccccc
Q 020454           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCS  152 (326)
Q Consensus        74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~~~~  152 (326)
                      .+.|+..++...+....+...         ..+.++++..        ..+.|+.. ...+.|+.++++....  +..  
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~---------~~p~gla~d~--------~~~~Ly~sD~~~~~I~~~~~~g~~~--~~~--  443 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL---------RNVVALDTEV--------ASNRIYWSDLSQRMICSTQLDRAHG--VSS--  443 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC---------TTCCCCEEET--------TTTEEEECCTTTTSBEEEESCCCCC---CC--
T ss_pred             ccceEEEeCCCCcceeeeccC---------cceEEEcccc--------ccCeEEEEecCCCeEEEEecCCCCC--Ccc--
Confidence            367888888665553333221         2344566533        23444444 3457788777653100  000  


Q ss_pred             eEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEE
Q 020454          153 TVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (326)
Q Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~  231 (326)
                      ...++. ........|++++.+ +++++-...+.|.++++........+...      +   .....+++.|. .+.+++
T Consensus       444 ~~~~i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~------~---~~P~giavDp~-~g~ly~  512 (699)
T 1n7d_A          444 YDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ------G---SKPRAIVVDPV-HGFMYW  512 (699)
T ss_dssp             CCCBCC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCS------S---CCCCCEECCSS-SSCCEE
T ss_pred             eEEEEe-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCC------C---CCcceEEEccC-CCcEEE
Confidence            000110 011234567787544 55555456678999998755433222111      1   12346777774 343444


Q ss_pred             EEeCC-CeEEEEeCCCCCCceeEE-eecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCC
Q 020454          232 AGTND-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRT  289 (326)
Q Consensus       232 ~~~~d-g~v~iwd~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~  289 (326)
                      +-... +.|..+++.....  ..+ ...-.....|+|+|++..|+ +-...+.|..+++..
T Consensus       513 td~~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          513 TDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCCSSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             cccCCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            44333 6788887764322  222 12223457899999866666 444567899999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.80  E-value=0.19  Score=42.40  Aligned_cols=191  Identities=9%  Similarity=-0.063  Sum_probs=109.4

Q ss_pred             CeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEccccc
Q 020454           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTK  144 (326)
Q Consensus        66 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~  144 (326)
                      ++|+.+ ....|+..++........+..         ...+.++++..        .++.|+.. ...+.|+.++++...
T Consensus        84 ~~ll~~-~~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~--------~~~~lywsD~~~~~I~~~~~~g~~  145 (400)
T 3p5b_L           84 AYLFFT-NRHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEV--------ASNRIYWSDLSQRMICSTQLDRAH  145 (400)
T ss_dssp             CEEEEE-ETTEEEEECTTSCSCEEEECS---------CSCEEEEEEET--------TTTEEEEEETTTTEEEEEEC----
T ss_pred             ceeEEe-ccceeEEEccCCcceeEeccc---------cCcceEEeeee--------ccCceEEEecCCCeEEEEEcccCC
Confidence            344444 447899999876654333322         24566777643        23444444 456777777754311


Q ss_pred             cccccccceEEEEEccCCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEee
Q 020454          145 VSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  223 (326)
                      .    ......+.. ........+++++. +++.++-...+.|.+.++........+...      +   ....++++.|
T Consensus       146 ~----~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~------~---~~P~~iavdp  211 (400)
T 3p5b_L          146 G----VSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------G---SKPRAIVVDP  211 (400)
T ss_dssp             ------CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS------S---CCEEEEEEET
T ss_pred             C----CCcceEEEe-CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC------C---CCcceEEEec
Confidence            0    000111211 22346778899874 556666667788999998765433322211      1   2356889988


Q ss_pred             cCCCcEEEEEeC-CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCC
Q 020454          224 IDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG  290 (326)
Q Consensus       224 ~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~  290 (326)
                      . .+.++++-.. .+.|...++... .........-.....|++++++..|+.+. ..+.|..+|+...
T Consensus       212 ~-~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          212 V-HGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             T-TTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             c-cCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            5 4545555433 478888888744 22222222335678999998877777554 4678999998754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.17  Score=41.51  Aligned_cols=116  Identities=8%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCC-CceEEEEEeeeCCCCCeEEEE--ecCCcEEEEeccccceeeee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g--~~dg~i~i~~~~~~~~~~~~   91 (326)
                      -.++.++.||.|.-.|..++     ++  .|.-+.. ....+...-.....+..++++  ..||.|..++..+|..+..+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG-----~~--~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNG-----HI--IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTT-----EE--EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCC-----cE--EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            46889999999999998877     44  3332211 011111110001112234444  68999999998877554333


Q ss_pred             cccCCCCCCCCCCCeeeee--cc-cccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           92 SNAGDSGAQPEDDGIVGLH--LF-KRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~--~~-~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      .....    ....++..-.  .. .   ....+.++.+++++.+|.+...|+....
T Consensus        84 ~~~~l----v~~SP~~~~~~pvv~~---~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           84 SIRQL----VSTSPLHLKTNIVVND---SGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             EHHHH----HTTCSEEEECC-------------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             ccccc----eeccccccCCCceeec---ccccccCCEEEEEecCCEEEEEECCCCc
Confidence            22000    0011222100  00 0   0000135688999999998888866543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.66  E-value=0.38  Score=47.04  Aligned_cols=197  Identities=13%  Similarity=0.091  Sum_probs=107.5

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      ..+.+|.- ...++.|||+++...+..+...         .+|.-..|.+          ...+.--.+..|+-|++...
T Consensus        76 ~~~iiALr-ag~~lQiFnl~~k~klks~~~~---------e~VvfWkWis----------~~~l~lVT~~aVyHW~~~~~  135 (1630)
T 1xi4_A           76 ASKVIALK-AGKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWIS----------LNTVALVTDNAVYHWSMEGE  135 (1630)
T ss_pred             CcceEEEe-cCCeEEEeehHHhhhhcccccC---------CCceEEEecC----------CCeeEEEcCCeEEEeccCCC
Confidence            33444444 4799999999877766655531         3455455533          33444445667899998642


Q ss_pred             ccccccccceEEEEEcc---CCCceEEEEEcCCCCEEEEec-------CCCeEEEEECCCceeeeeecCCCCCCCCcCCC
Q 020454          144 KVSAESSCSTVKSWNVC---ASGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (326)
Q Consensus       144 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  213 (326)
                      .       .++++++..   .+..|..-..+++.++++..|       -.|.+.+|..+.+.. ..+.+|......+..+
T Consensus       136 s-------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~  207 (1630)
T 1xi4_A          136 S-------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKME  207 (1630)
T ss_pred             C-------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccC
Confidence            2       233333322   134677778888888876533       347788888765321 1122222111111111


Q ss_pred             CceeeeEEeecCCCcEEEEEe---CCCeEEEEeCCCC---CCcee----EEee----cCCceEEEEecCCCCeEEEEcCC
Q 020454          214 TWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQ---RRPVM----SFDF----RETPIKAVAEEPDSFNIYIGNGS  279 (326)
Q Consensus       214 ~~v~~~~~~p~~~~~~l~~~~---~dg~v~iwd~~~~---~~~~~----~~~~----~~~~i~~v~~s~~~~~l~~g~~d  279 (326)
                      ..       +. ...+++.+.   ..++++|-++...   ..+..    .+..    ...--.++..++.-..++.-+.-
T Consensus       208 ~~-------~~-~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~  279 (1630)
T 1xi4_A          208 GN-------AE-ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  279 (1630)
T ss_pred             CC-------CC-CceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence            10       00 011222111   1268888887432   11111    0111    11223456778877788888999


Q ss_pred             CcEEEEECCCCeEEEEE
Q 020454          280 GDLASVDIRTGKLLGCF  296 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~~  296 (326)
                      |.+++||+.++.++..-
T Consensus       280 G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          280 GYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             ceEEEEecccchhhhhc
Confidence            99999999999876543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.62  E-value=0.28  Score=41.86  Aligned_cols=155  Identities=10%  Similarity=0.060  Sum_probs=79.2

Q ss_pred             CceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE-EEEecCCCeEEEEECCC--cee--
Q 020454          123 SRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDK--CEK--  196 (326)
Q Consensus       123 ~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~~--~~~--  196 (326)
                      ++.|+. -..++.|..++.+...        ...+...........++++|++++ +++-...+.|..++...  ++.  
T Consensus       237 ~g~lyv~d~~~~~V~~~~~~~~~--------~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~  308 (430)
T 3tc9_A          237 NGELYFNSWNAGQVFRYDFTTQE--------TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTT  308 (430)
T ss_dssp             TCCEEEEETTTTEEEEEETTTTE--------EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC
T ss_pred             CCEEEEEECCCCEEEEEECCCCc--------EEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccc
Confidence            344444 4456777777755321        112333333345778999999984 45555678899987653  221  


Q ss_pred             eeeecCC--CCCCCC-c---CCCCcee-eeEEee------cCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeec------
Q 020454          197 IWTAKPP--PKNSLG-I---FTPTWFT-SAAFLS------IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------  257 (326)
Q Consensus       197 ~~~~~~~--~~~~~~-~---~~~~~v~-~~~~~p------~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------  257 (326)
                      ...+...  ...... .   ..-.... .+...+      ..++.++++-...+.|+.++.. + . +..+.+.      
T Consensus       309 ~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G-~-v~~~~g~g~~~~~  385 (430)
T 3tc9_A          309 PYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-G-R-VTTFAGRGSNGTS  385 (430)
T ss_dssp             CEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-S-E-EEEEEECCTTSSS
T ss_pred             eEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-C-c-EEEEEeCCCCCCC
Confidence            1111110  000000 0   0001122 333322      1235566666677888888843 3 2 3333221      


Q ss_pred             ---C---------CceEEEEecCC-CCeEEEEcCCCcEEEEECC
Q 020454          258 ---E---------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       258 ---~---------~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~  288 (326)
                         +         .....++++|+ +.++++-..++.|+.++++
T Consensus       386 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          386 GYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             SCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence               1         14678889885 5444454556678877754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.55  E-value=0.24  Score=41.76  Aligned_cols=98  Identities=10%  Similarity=0.092  Sum_probs=66.1

Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-----------ceeEEee------cCCceEEEEecCC---CCeEEE
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------PVMSFDF------RETPIKAVAEEPD---SFNIYI  275 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~------~~~~i~~v~~s~~---~~~l~~  275 (326)
                      +..+..+|  +|.+||..+ +..|.|-.+.....           ..+.+..      ...+|..+.|+|-   +..|++
T Consensus        68 i~qlvlSp--sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           68 TFHVISST--SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TCEEEECT--TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             eeEEEECC--CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            55677776  566777665 67899998773211           1123332      2467999999996   568999


Q ss_pred             EcCCCcEEEEECCCC--eEEEEEc---------ceecceEEEEEECCCCCEEEE
Q 020454          276 GNGSGDLASVDIRTG--KLLGCFI---------GKCSGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       276 g~~dg~v~iwd~~~~--~~~~~~~---------~~~~~~v~~l~~~p~~~~l~s  318 (326)
                      -..|+.|++||+...  ++. .+.         .. ...|.+++|.+++-.|..
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~-~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR-VNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS-CCCEEEEEECTTSSCEEE
T ss_pred             EecCCEEEEEEcccCCCCCc-chhccccccCCCcc-cceEEEEEEcCCCcEEEE
Confidence            999999999999852  222 222         11 257889999987765554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.46  E-value=0.3  Score=40.44  Aligned_cols=229  Identities=11%  Similarity=0.088  Sum_probs=113.1

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec----C----CcEEEEE
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----K----GKASMRS  139 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~----~----g~v~i~~  139 (326)
                      |+++..+|.|++++. +++  ..+..+.  ..........++++.+...     .++.|+++..    +    +.|..++
T Consensus        42 l~V~e~~g~I~~~d~-~G~--~~~~~~~--v~~~g~~g~~gia~~pdf~-----~~g~lyv~~~~~~~~~~~~~~v~r~~  111 (354)
T 3a9g_A           42 YLVTERPGRLVLISP-SGK--KLVASFD--VANVGEAGLLGLALHPEFP-----KKSWVYLYASYFAEGGHIRNRVIRGR  111 (354)
T ss_dssp             EEEEETTTEEEEECS-SCE--EEEEECC--CCCSTTCSEEEEEECTTTT-----TSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEeC-CCc--eEeeccc--eeecCCCceeeEEeCCCCC-----cCCEEEEEEeccCCCCCcceEEEEEE
Confidence            666777799999974 444  2222111  0012234567787644110     1346655544    2    4555555


Q ss_pred             ccccccccccccceE-EEEEccCCCceEEEEEcCCCCEEEEecCC-------------CeEEEEECCCce---------e
Q 020454          140 IEVTKVSAESSCSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKG-------------VEVNVWDLDKCE---------K  196 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-------------~~i~iwd~~~~~---------~  196 (326)
                      ....... ......+ .-+..........|.|.|++.+.++-+..             +.|.-++....-         .
T Consensus       112 ~~~~~~~-~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~  190 (354)
T 3a9g_A          112 LDGSTFK-LKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP  190 (354)
T ss_dssp             ECSSSCC-EEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC
T ss_pred             ECCCCcC-cCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc
Confidence            4432100 0000111 11221111234678999999877664432             344444433210         0


Q ss_pred             eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC---eEEEEeCCC---------------CCCceeEEeecC
Q 020454          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSA---------------QRRPVMSFDFRE  258 (326)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg---~v~iwd~~~---------------~~~~~~~~~~~~  258 (326)
                      ++. .+       +   .....++|.|. ++.++++-....   .|.+...-.               ...++..+....
T Consensus       191 i~a-~G-------~---rnp~Gla~d~~-~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~  258 (354)
T 3a9g_A          191 IWS-YG-------H---RNPQGIDWHRA-SGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET  258 (354)
T ss_dssp             EEE-EC-------C---SCCCEEEECTT-TCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred             EEE-Ec-------c---CCcceEEEeCC-CCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence            110 01       1   12347788873 344555433222   243332111               012334441122


Q ss_pred             CceEEEEec-------CCCCeEEEEcCCCcEEEEECCCC-eEE--EEEc-ceecceEEEEEECCCCCEEEEec
Q 020454          259 TPIKAVAEE-------PDSFNIYIGNGSGDLASVDIRTG-KLL--GCFI-GKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       259 ~~i~~v~~s-------~~~~~l~~g~~dg~v~iwd~~~~-~~~--~~~~-~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      .....++|.       .+|.++++.-..+.|...++... +..  ..+. +. ...+..+++.|++.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEe
Confidence            456778883       46767777667778999998753 332  2332 22 45789999999998777653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.14  E-value=0.46  Score=39.27  Aligned_cols=190  Identities=11%  Similarity=0.063  Sum_probs=98.9

Q ss_pred             cCCcEEEEecccc--ceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec---CCcEEEEEcccccccc
Q 020454           73 KNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSA  147 (326)
Q Consensus        73 ~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~---~g~v~i~~~~~~~~~~  147 (326)
                      .+|.|.++|+.+.  +. ..+..... +.........++..+....     ...+|+++..   +..+.+|+++....  
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~-~~~~~~f~PhGi~~~~d~d-----g~~~L~Vvnh~~~~s~ielf~~d~~~~--  151 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGN-TLDISSFNPHGISTFIDDD-----NTVYLLVVNHPGSSSTVEVFKFQEEEK--  151 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECS-SCCGGGCCEEEEEEEECTT-----CCEEEEEEECSTTCCEEEEEEEETTTT--
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCC-CCCcCceeeeeeEEEECCC-----CcEEEEEEECCCCCCeEEEEEEECCCC--
Confidence            6899999998632  32 22222110 0011223556666544210     1224555532   45677887764321  


Q ss_pred             ccccceEEEEEccCCCceEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCceeeeeecCCCCCCCCc
Q 020454          148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----------------GVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (326)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~  210 (326)
                        ....+..+.-..-...+.+.+.++|.+.++...                 .+.|.-+|..  +......+        
T Consensus       152 --~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~--------  219 (355)
T 3sre_A          152 --SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG--------  219 (355)
T ss_dssp             --EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE--------
T ss_pred             --EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC--------
Confidence              111223333333446889999999987776541                 2334444432  21111111        


Q ss_pred             CCCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCCCCCCc--eeEEeecCCceEEEEecC-CCCeEEEEcCC-CcEEEE
Q 020454          211 FTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEP-DSFNIYIGNGS-GDLASV  285 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~i~~v~~s~-~~~~l~~g~~d-g~v~iw  285 (326)
                        -...+.++|+|  +++. +++-+..+.|..|++......  ...+. .....-.+++.+ +|++.+++..+ +.|..|
T Consensus       220 --l~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~  294 (355)
T 3sre_A          220 --FDFANGINISP--DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFY  294 (355)
T ss_dssp             --ESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred             --CcccCcceECC--CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence              02356899998  4444 455567889999998643221  12332 235667889998 58877766544 344444


Q ss_pred             ECC
Q 020454          286 DIR  288 (326)
Q Consensus       286 d~~  288 (326)
                      +..
T Consensus       295 ~P~  297 (355)
T 3sre_A          295 DAE  297 (355)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.08  E-value=1.1  Score=43.34  Aligned_cols=64  Identities=14%  Similarity=0.199  Sum_probs=39.6

Q ss_pred             CcEEEEEe----------CCCeEEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEE
Q 020454          227 HRKFVAGT----------NDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (326)
Q Consensus       227 ~~~l~~~~----------~dg~v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~  294 (326)
                      ..++++|+          ..|.|++|++...+ +.+.+. ..++++++++-- +| +|++|- ...|++|++...+.+.
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~  918 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR  918 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE
Confidence            35888886          35789999986321 112222 235788887732 45 555543 4689999998665433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.95  E-value=0.56  Score=38.71  Aligned_cols=59  Identities=12%  Similarity=0.100  Sum_probs=38.3

Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEECCCCe----E--EEEEcceecceEEEEEECCCCCEEEEec
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK----L--LGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~----~--~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ....++| .+|..+++.-..+.|...++....    .  ...+-.. ...+..+++.|++.+.++..
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence            4567777 467666666667778888776432    1  1222222 45789999999998776653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.76  E-value=1.1  Score=40.34  Aligned_cols=237  Identities=9%  Similarity=-0.021  Sum_probs=117.0

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~   96 (326)
                      ++.-.....|++.++.+.......+   .   ..-....++.+... .+.++++-..++.|..+++........+..   
T Consensus        11 ~~~~~~~~~I~~i~~~~~~~~~~~~---~---~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~---   80 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGKENATIV---V---GGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVV---   80 (619)
T ss_dssp             CEEEECSSBEEEECCC------------C---BCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEEC---
T ss_pred             eEEEeccccEEEEeCCCCcceEEEE---E---cCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEe---
Confidence            4445556678888887541011111   1   11122234444322 233444445567888888754321122211   


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCc-eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  175 (326)
                          .+-....++++..        .++ .+++-...+.|.+.+++...         .+..-.........++++|.+.
T Consensus        81 ----~~~~~P~GlAvD~--------~~~~ly~~d~~~~~I~v~~~dG~~---------~~~l~~~~l~~P~~Iavdp~~g  139 (619)
T 3s94_A           81 ----SGLLSPDGLACDW--------LGEKLYWTDSETNRIEVSNLDGSL---------RKVLFWQELDQPRAIALDPSSG  139 (619)
T ss_dssp             ----SSCSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSCCCCEEEETTTT
T ss_pred             ----CCCCCcCeEEEEe--------cCCEEEEEeCCCCEEEEEECCCCC---------EEEEEeCCCCCCceEEEecCCC
Confidence                1223566677532        233 34444566788888765322         1111112234567889998765


Q ss_pred             EEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          176 FSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       176 ~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      +|....  ....|...++...........         ...+.+++++.+. +++++++-...+.|..+|+..... ...
T Consensus       140 ~ly~tD~g~~~~I~r~~~dG~~~~~l~~~---------~~~~P~Glald~~-~~~LY~aD~~~~~I~~~~~dG~~~-~~~  208 (619)
T 3s94_A          140 FMYWTDWGEVPKIERAGMDGSSRFIIINS---------EIYWPNGLTLDYE-EQKLYWADAKLNFIHKSNLDGTNR-QAV  208 (619)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEEEECS---------SCSSEEEEEEETT-TTEEEEEETTTCCEEEESSSCCEE-C--
T ss_pred             eEEEeccCCCCEEEEEECCCCceEEEEeC---------CCCCCcEEEEEcc-CCEEEEEeCCCCeEEEecCCCCcc-EEE
Confidence            554433  245677777654322222211         1145778999874 454566666778899999874311 111


Q ss_pred             EeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEc
Q 020454          254 FDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      ....-.....+++..+  .|+ +-...+.|...|..+++....+.
T Consensus       209 ~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~  251 (619)
T 3s94_A          209 VKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIH  251 (619)
T ss_dssp             -------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred             EeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEe
Confidence            1111122346677544  555 44467789999998876544443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.72  E-value=0.45  Score=39.34  Aligned_cols=149  Identities=9%  Similarity=-0.018  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeC-----
Q 020454          164 TIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTN-----  235 (326)
Q Consensus       164 ~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~-----  235 (326)
                      ....|++.|+++ ++++ ...+.|++++.. ++....+.....  ...........++++|.  .++.+.++-+.     
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPD--VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCC--CCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcc--cccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            567899999998 6654 567899999853 332111111110  00011234578899883  13434444332     


Q ss_pred             --CCeEEEEeCCCCCCce---eE-Eee------cCCceEEEEecCCCCeEEEEcC-------------CCcEEEEECCCC
Q 020454          236 --DHQVRLYDTSAQRRPV---MS-FDF------RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTG  290 (326)
Q Consensus       236 --dg~v~iwd~~~~~~~~---~~-~~~------~~~~i~~v~~s~~~~~l~~g~~-------------dg~v~iwd~~~~  290 (326)
                        ...|..|+.......+   .. +..      ....-..++|.|||.+.++-+.             .|.|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              2356666654321111   11 111      1122457999999955544322             246777776532


Q ss_pred             e------------EEEEEcceecceEEEEEECC-CCCEEE
Q 020454          291 K------------LLGCFIGKCSGSIRSIARHP-TLPIIA  317 (326)
Q Consensus       291 ~------------~~~~~~~~~~~~v~~l~~~p-~~~~l~  317 (326)
                      -            ....+... ......++|+| ++.+.+
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~  213 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWL  213 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEE
T ss_pred             CCCCCCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEE
Confidence            0            11222211 23467899999 554443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.72  E-value=0.61  Score=37.39  Aligned_cols=133  Identities=13%  Similarity=0.058  Sum_probs=68.7

Q ss_pred             CCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---------CC
Q 020454          173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH  237 (326)
Q Consensus       173 ~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---------dg  237 (326)
                      ++++++.|+.+      ..+.+||..+.+-... ...+       .+..-.++...   ++++++.|+.         -.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSML-------TQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCEESCTTTCEECC
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCc-------CCcceeEEEEE---CCEEEEECCCCCCCCcccccc
Confidence            56777888765      4588999887653222 1111       11111122222   4556666653         34


Q ss_pred             eEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEE
Q 020454          238 QVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSI  307 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l  307 (326)
                      .+.+||+.+. . -..+..   ....-..+.+  +++.++.|+.+     ..+.+||+.+.+....  ++.. ......+
T Consensus       170 ~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~  244 (306)
T 3ii7_A          170 SCEVYDPATE-T-WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCA  244 (306)
T ss_dssp             CEEEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEE
T ss_pred             eEEEeCCCCC-e-EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEE
Confidence            5889998865 2 122211   1111122222  56666676653     4689999988754322  2211 1122223


Q ss_pred             EECCCCCEEEEeccCc
Q 020454          308 ARHPTLPIIASCGFLE  323 (326)
Q Consensus       308 ~~~p~~~~l~s~s~D~  323 (326)
                      .+  ++.+++.||.++
T Consensus       245 ~~--~~~i~v~GG~~~  258 (306)
T 3ii7_A          245 AV--GSIVYVLAGFQG  258 (306)
T ss_dssp             EE--TTEEEEEECBCS
T ss_pred             EE--CCEEEEEeCcCC
Confidence            33  667888888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.58  E-value=0.69  Score=37.00  Aligned_cols=133  Identities=12%  Similarity=0.055  Sum_probs=67.2

Q ss_pred             CCCEEEEecCCC-----eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-------CeEE
Q 020454          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-------HQVR  240 (326)
Q Consensus       173 ~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-------g~v~  240 (326)
                      ++++++.|+.++     .+.+||+.+.+-... ...+       .+..-.+++..   ++++++.|+.+       ..+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMN-------TRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCEETTTTEECCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCC-------CcccCceEEEE---CCEEEEEeCCCCCCCccccEEE
Confidence            567777777653     477888876653322 1111       11111122222   45566666542       3588


Q ss_pred             EEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEEEEC
Q 020454          241 LYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH  310 (326)
Q Consensus       241 iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~  310 (326)
                      +||+.+. . -..+.   ........+.+  +++.++.|+.+     ..+.+||+.+.+....  +... ...-..+.  
T Consensus       177 ~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~--  249 (302)
T 2xn4_A          177 CYNATTN-E-WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCA--  249 (302)
T ss_dssp             EEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--
T ss_pred             EEeCCCC-c-EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEE--
Confidence            9998754 1 11111   11111222233  56677777654     3699999988765432  1111 11111222  


Q ss_pred             CCCCEEEEeccCc
Q 020454          311 PTLPIIASCGFLE  323 (326)
Q Consensus       311 p~~~~l~s~s~D~  323 (326)
                      .++.+++.||.++
T Consensus       250 ~~~~i~v~GG~~~  262 (302)
T 2xn4_A          250 VNGLLYVVGGDDG  262 (302)
T ss_dssp             ETTEEEEECCBCS
T ss_pred             ECCEEEEECCcCC
Confidence            2667788887765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.51  E-value=0.35  Score=36.82  Aligned_cols=144  Identities=6%  Similarity=-0.039  Sum_probs=75.8

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEECCCcee-eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      .+..++|+|++.+.++  .++.+.-.+..+... .+.-..........   ..-.++.|.|  ++.+.++  .||.|+-+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw---~~F~a~~fD~--~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW---NQFQFLFFDP--NGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG---GGCSEEEECT--TSCEEEE--ETTEEEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc---ccceEEEECC--CCCEEEe--CCCEEEEe
Confidence            5679999999887776  677766666533111 11000000000000   0124667776  5645555  56999888


Q ss_pred             eCCCCCCcee----EE--eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe------EEEEEc-ceecceEEEEEE
Q 020454          243 DTSAQRRPVM----SF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------LLGCFI-GKCSGSIRSIAR  309 (326)
Q Consensus       243 d~~~~~~~~~----~~--~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~------~~~~~~-~~~~~~v~~l~~  309 (326)
                      +..+......    ..  ...=..+..|.+.|+|.+.++.  |+.++-....++.      ....+- .. -..-+.+.|
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f  189 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFF  189 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEE
Confidence            8643212110    11  1111467999999999877776  7775443333211      011111 22 334556778


Q ss_pred             CCCCCEEEEe
Q 020454          310 HPTLPIIASC  319 (326)
Q Consensus       310 ~p~~~~l~s~  319 (326)
                      .|++.+.+..
T Consensus       190 ~~~G~l~~v~  199 (236)
T 1tl2_A          190 SSVGTLFGVQ  199 (236)
T ss_dssp             CTTSCEEEEE
T ss_pred             CCCCcEEEEe
Confidence            8988766654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.51  E-value=0.23  Score=41.17  Aligned_cols=102  Identities=20%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe---ecCCceEEEEecCC---CCeEEEEcC----C----Cc
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPD---SFNIYIGNG----S----GD  281 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~---~~~l~~g~~----d----g~  281 (326)
                      ...++|.|  +++ |+++..+|.|+++|.. +...+..+.   ........|+++|+   +..|++...    +    +.
T Consensus        31 P~~ia~~p--dG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           31 PWSIAPLG--GGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEEEE--TTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CeEEEEcC--CCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            56889998  564 6666677999999743 322222221   12356889999998   556655443    2    57


Q ss_pred             EEEEECCCC-------eEE-EEEcceecceEEEEEECCCCCEEEEecc
Q 020454          282 LASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       282 v~iwd~~~~-------~~~-~~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                      |..|+....       +.+ ..+..........|+|.|++.+.++.+.
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~  154 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD  154 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence            888887654       111 2233110123567999999987777553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.37  E-value=1.5  Score=39.43  Aligned_cols=187  Identities=6%  Similarity=-0.052  Sum_probs=99.9

Q ss_pred             EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEcccccccccc
Q 020454           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAES  149 (326)
Q Consensus        71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~~~~~~~~~  149 (326)
                      =.....|+..++........+..       ..-....++.+..        .++.|+.. ...+.|..++++...     
T Consensus        14 ~~~~~~I~~i~~~~~~~~~~~~~-------~~~~~~~~ld~~~--------~~~~ly~sD~~~~~I~r~~~~g~~-----   73 (619)
T 3s94_A           14 YANRRDLRLVDATNGKENATIVV-------GGLEDAAAVDFVF--------SHGLIYWSDVSEEAIKRTEFNKTE-----   73 (619)
T ss_dssp             EECSSBEEEECCC---------C-------BCCSCEEEEEEET--------TTTEEEEEETTTTEEEEEEC---------
T ss_pred             EeccccEEEEeCCCCcceEEEEE-------cCCCceEEEEEEe--------CCCEEEEEECCCCeEEEEEccCCC-----
Confidence            34457889998864421111111       1123456676543        33455444 345666666654321     


Q ss_pred             ccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc
Q 020454          150 SCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (326)
Q Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  228 (326)
                        ....+.. ..-.....+++++.+ ++.++-...+.|.+.++............      +   ....++++.|. .+.
T Consensus        74 --~~~~v~~-~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~------l---~~P~~Iavdp~-~g~  140 (619)
T 3s94_A           74 --SVQNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE------L---DQPRAIALDPS-SGF  140 (619)
T ss_dssp             ---CEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------C---SCCCCEEEETT-TTE
T ss_pred             --ceEEEEe-CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCC------C---CCCceEEEecC-CCe
Confidence              0111111 122467899999855 55566667789999998754332222111      1   22457888885 454


Q ss_pred             EEEEEe-CCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCe
Q 020454          229 KFVAGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK  291 (326)
Q Consensus       229 ~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~  291 (326)
                      ++++-. ..+.|...++... .........-.....+++++++..|+.+ ...+.|..+|+....
T Consensus       141 ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~  204 (619)
T 3s94_A          141 MYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  204 (619)
T ss_dssp             EEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred             EEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence            555542 2467777777643 2222222233467899999987777655 456789999987543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.14  E-value=1.7  Score=38.99  Aligned_cols=231  Identities=8%  Similarity=-0.041  Sum_probs=127.2

Q ss_pred             cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCC
Q 020454           21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ  100 (326)
Q Consensus        21 ~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  100 (326)
                      +....|+..++.+.     .......- ..-....++.++.. .+.+.++-..++.|..+++........+.        
T Consensus        12 s~~~~I~~i~l~~~-----~~~~~~~~-~~~~~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~~~~~v~~--------   76 (628)
T 4a0p_A           12 SRRADIRRISLETN-----NNNVAIPL-TGVKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHVVE--------   76 (628)
T ss_dssp             EETTEEEEEESSCT-----TCEEECCC-CSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEEC--------
T ss_pred             EeCCcEEEEECCCC-----CcceEEEc-CCCCceEEEEEECC-CCEEEEEECCCCeEEEEECCCCCcEEEEe--------
Confidence            46678888888765     11111111 11123344555432 33345555667889988885443322222        


Q ss_pred             CCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEe
Q 020454          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (326)
Q Consensus       101 ~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  180 (326)
                      .+.....++++...       .++.+++-...+.|.+.+++...       ..+ +. ...-.....++++|...+|+..
T Consensus        77 ~g~~~P~GlAvD~~-------~~~LY~tD~~~~~I~v~~~dG~~-------~~~-l~-~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           77 FGLDYPEGMAVDWL-------GKNLYWADTGTNRIEVSKLDGQH-------RQV-LV-WKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             SSCSCCCEEEEETT-------TTEEEEEETTTTEEEEEETTSTT-------CEE-EE-CSSCCCEEEEEEETTTTEEEEE
T ss_pred             CCCCCcceEEEEeC-------CCEEEEEECCCCEEEEEecCCCc-------EEE-EE-eCCCCCcccEEEccCCCeEEEe
Confidence            11134555665220       12344554556777777764321       011 11 1233467899999865555444


Q ss_pred             c--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecC
Q 020454          181 G--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (326)
Q Consensus       181 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  258 (326)
                      .  ..+.|...++...........       +   .+..++++.+. .+++.++-...+.|..+|+.....  ..+...-
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~~~-------~---~~P~GlalD~~-~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l  207 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLVPN-------V---GRANGLTIDYA-KRRLYWTDLDTNLIESSNMLGLNR--EVIADDL  207 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECS-------C---SSEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSC--EEEEECC
T ss_pred             CCCCCCEEEEEeCCCCceEEEECC-------C---CCcceEEEccc-cCEEEEEECCCCEEEEEcCCCCce--EEeeccC
Confidence            3  356788888765433222221       1   45678999874 344556667788999999975433  2333333


Q ss_pred             CceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEc
Q 020454          259 TPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       259 ~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      .....+++.. + .|+ +-...+.|...|..+++....+.
T Consensus       208 ~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          208 PHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             SCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEEEe
Confidence            4456777754 3 555 54457889999987776544444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.06  E-value=1.5  Score=37.70  Aligned_cols=111  Identities=9%  Similarity=0.020  Sum_probs=59.0

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeC---
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTN---  235 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~---  235 (326)
                      .....|++.|+++++++-...+.|++++..+++..  ..+......   .........++|+|.  .++.+.++-+.   
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~---~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND---ADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC---TTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccc---cCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            35678999999998877554457888886544432  222111000   001234668999984  13333333332   


Q ss_pred             ---------CCeEEEEeCCCCCC------ceeE-Eee-cCCceEEEEecCCCCeEEEE
Q 020454          236 ---------DHQVRLYDTSAQRR------PVMS-FDF-RETPIKAVAEEPDSFNIYIG  276 (326)
Q Consensus       236 ---------dg~v~iwd~~~~~~------~~~~-~~~-~~~~i~~v~~s~~~~~l~~g  276 (326)
                               ...|.-|+......      .+.. +.. .......|+|.|||.+.++-
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence                     23455555432211      1111 111 12357889999999866643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.04  E-value=1.2  Score=36.61  Aligned_cols=149  Identities=11%  Similarity=-0.019  Sum_probs=80.3

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceee--eeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEE--eCC
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAG--TND  236 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~--~~d  236 (326)
                      .....|++.|++.++++--..+.|++++...++..  ..+....     .........++++|.  .++.+.++-  ..+
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~-----~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS-----PSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----CBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee-----ecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            46778999999998877655899999987655432  1111111     111234678999984  234333322  234


Q ss_pred             CeEEEEeCCCCC-------Cc--ee-EEe-ecCCceEEEEecCCCCeEEEEc-------------CCCcEEEEECCCCe-
Q 020454          237 HQVRLYDTSAQR-------RP--VM-SFD-FRETPIKAVAEEPDSFNIYIGN-------------GSGDLASVDIRTGK-  291 (326)
Q Consensus       237 g~v~iwd~~~~~-------~~--~~-~~~-~~~~~i~~v~~s~~~~~l~~g~-------------~dg~v~iwd~~~~~-  291 (326)
                      +.|.-|......       ..  +. .+. .....-..|+|.|||.+.++-+             ..|.|.-++....- 
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            566666554310       11  11 121 1122346789999997666532             23555555544210 


Q ss_pred             ------EEEEEc-ceecceEEEEEECCCCCEEEE
Q 020454          292 ------LLGCFI-GKCSGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       292 ------~~~~~~-~~~~~~v~~l~~~p~~~~l~s  318 (326)
                            ....+. +| . ....++|+|++.+.++
T Consensus       187 ~~nPf~~~~i~a~G~-R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          187 PGNPFPGSPVYSYGH-R-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             TTCSSTTCCEEEBCC-S-BCCEEEECTTCCEEEE
T ss_pred             CCCCCCCCeEEeeCC-C-CcceEEECCCCCEEEE
Confidence                  011222 33 3 3568999998765543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.03  E-value=1.1  Score=36.02  Aligned_cols=133  Identities=13%  Similarity=0.076  Sum_probs=67.9

Q ss_pred             CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY  242 (326)
Q Consensus       173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw  242 (326)
                      ++++++.|+.+     ..+.+||+.+.+-.... ..+       .+..-.++...   ++++++.|+.+     ..+.+|
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~y  189 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML-------TRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECY  189 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS-------SCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC-------ccccceEEEEE---CCEEEEEeCCCCCCcCceEEEE
Confidence            56777777754     35888998776532221 111       11111122222   45566776654     458889


Q ss_pred             eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEEEECCC
Q 020454          243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPT  312 (326)
Q Consensus       243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~  312 (326)
                      |+.+. . -..+.   ........+.+  +++.++.|+.+     ..+.+||+.+.+....  ++.. ......+.+  +
T Consensus       190 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~  262 (308)
T 1zgk_A          190 YPERN-E-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITVH--Q  262 (308)
T ss_dssp             ETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--T
T ss_pred             eCCCC-e-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccceEEEEE--C
Confidence            98754 1 11111   11111222233  56666777654     5699999988764431  2211 111112222  5


Q ss_pred             CCEEEEeccCc
Q 020454          313 LPIIASCGFLE  323 (326)
Q Consensus       313 ~~~l~s~s~D~  323 (326)
                      +++++.||.++
T Consensus       263 ~~i~v~GG~~~  273 (308)
T 1zgk_A          263 GRIYVLGGYDG  273 (308)
T ss_dssp             TEEEEECCBCS
T ss_pred             CEEEEEcCcCC
Confidence            67888887665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.99  E-value=1.9  Score=38.71  Aligned_cols=206  Identities=7%  Similarity=-0.057  Sum_probs=115.4

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEcccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKV  145 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~  145 (326)
                      +|+.+ ....|+..++...+....+..       .+-..+.++.+..        .++.++ +-..++.|+.++++... 
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~--------~~~~lywtD~~~~~I~r~~~~g~~-   70 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDV--------TDNRIYWTDISLKTISRAFMNGSA-   70 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCS-
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEEC--------CCCEEEEEECCCCeEEEEECCCCC-
Confidence            44444 668899999976544222221       1123456677644        334444 44556777777654321 


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                             ...+.. ........+++++.+ ++.++-...+.|.+.++...........      .+   ....++++.|.
T Consensus        71 -------~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~------~l---~~P~~iavdp~  133 (628)
T 4a0p_A           71 -------LEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK------DL---DSPRALALDPA  133 (628)
T ss_dssp             -------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS------SC---CCEEEEEEETT
T ss_pred             -------cEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC------CC---CCcccEEEccC
Confidence                   111222 112346678888655 4555656678899999875432211111      01   23568899885


Q ss_pred             CCCcEEEEE-eCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCCeEEEEEcceecc
Q 020454          225 DDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       225 ~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                       .+.++++- +..+.|...++... . ...+...-.....+++++++..|+.+. ..+.|..+|+..... ..+... ..
T Consensus       134 -~G~lY~tD~g~~~~I~r~~~dG~-~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~  208 (628)
T 4a0p_A          134 -EGFMYWTEWGGKPKIDRAAMDGS-E-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LP  208 (628)
T ss_dssp             -TTEEEEEECSSSCEEEEEETTSC-S-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CS
T ss_pred             -CCeEEEeCCCCCCEEEEEeCCCC-c-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CC
Confidence             45454544 23578888888744 2 233323445678999999877777554 567899999875433 223222 22


Q ss_pred             eEEEEEECC
Q 020454          303 SIRSIARHP  311 (326)
Q Consensus       303 ~v~~l~~~p  311 (326)
                      ....|++..
T Consensus       209 ~P~glav~~  217 (628)
T 4a0p_A          209 HPFGLTQYQ  217 (628)
T ss_dssp             CEEEEEEET
T ss_pred             CceEEEEEC
Confidence            334666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.91  E-value=1.1  Score=35.66  Aligned_cols=133  Identities=11%  Similarity=0.081  Sum_probs=68.6

Q ss_pred             CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY  242 (326)
Q Consensus       173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw  242 (326)
                      ++++++.|+.+     ..+.+||+.+.+-...... +       .+..-.++...   ++++++.|+.+     ..+.+|
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM-Q-------TAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-S-------SCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC-C-------CCcccceEEEE---CCEEEEECCCCCCcccceEEEE
Confidence            56777777754     3588899887653222111 1       01111122222   45567776654     468899


Q ss_pred             eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEEE--EcceecceEEEEEECCC
Q 020454          243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPT  312 (326)
Q Consensus       243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~  312 (326)
                      |+.+. . -..+.   ........+.+  +++.++.|+.+     ..+.+||+.+.+....  ++.. ......+.+  +
T Consensus       181 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~  253 (301)
T 2vpj_A          181 DPHTG-H-WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATVL--R  253 (301)
T ss_dssp             ETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--T
T ss_pred             eCCCC-c-EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEEE--C
Confidence            98754 2 12221   11111222233  56666777664     4699999998765432  2211 111122222  6


Q ss_pred             CCEEEEeccCc
Q 020454          313 LPIIASCGFLE  323 (326)
Q Consensus       313 ~~~l~s~s~D~  323 (326)
                      +++++.||.++
T Consensus       254 ~~i~v~GG~~~  264 (301)
T 2vpj_A          254 GRLYAIAGYDG  264 (301)
T ss_dssp             TEEEEECCBCS
T ss_pred             CEEEEEcCcCC
Confidence            67788887664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.85  E-value=0.29  Score=40.44  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-CceeEEe---ecCCceEEEEecCC---CCeEEEEcCC------CcE
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFD---FRETPIKAVAEEPD---SFNIYIGNGS------GDL  282 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~---~~~~~i~~v~~s~~---~~~l~~g~~d------g~v  282 (326)
                      ...++|.|  +++ ++++..+|.|++++ . +. ..+..+.   ........|+++|+   +..|++....      +.|
T Consensus        33 P~~ia~~p--dG~-l~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           33 PWALAFLP--DGG-MLIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             EEEEEECT--TSC-EEEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             ceEEEEcC--CCe-EEEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45788887  565 55556679999998 2 31 1122111   12356789999998   5566654432      578


Q ss_pred             EEEECCCCe-----E-EEEEc---ceecceEEEEEECCCCCEEEEec
Q 020454          283 ASVDIRTGK-----L-LGCFI---GKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       283 ~iwd~~~~~-----~-~~~~~---~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ..|+...++     . +..+.   +. ......|+|.|++.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~-~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHG-LHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTC-CCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCC-CcCCceEEECCCCCEEEEEC
Confidence            888877542     1 22243   11 12346899999998777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.04  E-value=1.9  Score=34.64  Aligned_cols=133  Identities=15%  Similarity=0.113  Sum_probs=67.2

Q ss_pred             CCCEEEEecCC--------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC------CCe
Q 020454          173 SEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQ  238 (326)
Q Consensus       173 ~~~~l~sg~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~------dg~  238 (326)
                      ++++++.|+.+        +.+.+||..+.+-... ...+       .+..-.++...   ++++++.|+.      -..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~  166 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLP-------YVVYGHTVLSH---MDLVYVIGGKGSDRKCLNK  166 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCS-------SCCBSCEEEEE---TTEEEEECCBCTTSCBCCC
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCC-------CcccceeEEEE---CCEEEEEeCCCCCCcccce
Confidence            56777777743        4588999887653221 1111       11111122222   4556677765      246


Q ss_pred             EEEEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeEEEE--EcceecceEEEEE
Q 020454          239 VRLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGC--FIGKCSGSIRSIA  308 (326)
Q Consensus       239 v~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~dg-----~v~iwd~~~~~~~~~--~~~~~~~~v~~l~  308 (326)
                      +.+||+.+. + -..+.   ........+.+  +++.++.|+.++     .+.+||+.+.+....  ++.. ......+.
T Consensus       167 ~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~  241 (315)
T 4asc_A          167 MCVYDPKKF-E-WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS  241 (315)
T ss_dssp             EEEEETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred             EEEEeCCCC-e-EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE
Confidence            889998754 1 11111   11111222233  566777777654     588999988754432  1111 11112222


Q ss_pred             ECCCCCEEEEeccCc
Q 020454          309 RHPTLPIIASCGFLE  323 (326)
Q Consensus       309 ~~p~~~~l~s~s~D~  323 (326)
                      +  ++.+++.||.++
T Consensus       242 ~--~~~l~v~GG~~~  254 (315)
T 4asc_A          242 L--VGTLYAIGGFAT  254 (315)
T ss_dssp             E--TTEEEEEEEEEE
T ss_pred             E--CCEEEEECCccc
Confidence            2  567777777643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.86  E-value=1.8  Score=37.20  Aligned_cols=104  Identities=12%  Similarity=0.054  Sum_probs=59.3

Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ceeEEee------cCCceEEEEecCC---CCeEEEEcC-------
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF------RETPIKAVAEEPD---SFNIYIGNG-------  278 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~------~~~~i~~v~~s~~---~~~l~~g~~-------  278 (326)
                      ..+++|.|  +++++++-...+.|++++...+.. .+..+..      .......|+|+|+   +..|++...       
T Consensus        29 P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           29 PHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             EEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             ceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45888887  565555544335798888654421 1112211      2356679999996   556654442       


Q ss_pred             ------CCcEEEEECCCC-------eEEE-EEcceecceEEEEEECCCCCEEEEecc
Q 020454          279 ------SGDLASVDIRTG-------KLLG-CFIGKCSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       279 ------dg~v~iwd~~~~-------~~~~-~~~~~~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                            ...|.-|++..+       +.+. .+..........|+|.|++.+.++.|.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235666665432       1222 233211235789999999998887664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.33  E-value=2.8  Score=34.29  Aligned_cols=40  Identities=13%  Similarity=-0.067  Sum_probs=20.7

Q ss_pred             cEEEEECCCCeE--EEEEcceecceEEEEEECCCCCEEEEeccCc
Q 020454          281 DLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       281 ~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      .+.+||+.+.+.  +..++.. ...-..+.  .++++++.||.|+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~  327 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQG-RAYGVSLP--WNNSLLIIGGETA  327 (357)
T ss_dssp             CCEEEECC---CEEEEECSSC-CBSSEEEE--ETTEEEEEEEECG
T ss_pred             eEEEEecCCCceeeCCCCCCC-cccceeEE--eCCEEEEEeeeCC
Confidence            578999987643  3333322 11112222  3677888888765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.90  E-value=2.9  Score=33.25  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=56.4

Q ss_pred             CCCEEEEecCC-------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEE
Q 020454          173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVR  240 (326)
Q Consensus       173 ~~~~l~sg~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~  240 (326)
                      ++++++.|+.+       ..+.+||+.+.+-... ...+       .+..-.++...   ++++++.|+.+     ..+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~  223 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-AEMS-------TRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVE  223 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCBSSSSBCCCEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-CCCc-------cccccccEEEE---CCEEEEECCCCCCcccceEE
Confidence            56777777653       3588999887653322 1111       11111122222   45577777654     3688


Q ss_pred             EEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeEE
Q 020454          241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLL  293 (326)
Q Consensus       241 iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~dg-----~v~iwd~~~~~~~  293 (326)
                      +||+.+. + -..+..   .......+.+  +++.++.|+.++     .+.+||+.+.+..
T Consensus       224 ~yd~~~~-~-W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          224 VYDPTTN-A-WRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             EEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EEeCCCC-C-EeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            9998764 2 122211   1111122222  566777777653     4899999887643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.62  E-value=0.64  Score=35.39  Aligned_cols=96  Identities=8%  Similarity=0.041  Sum_probs=58.6

Q ss_pred             ceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC--------ceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--------PIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                      .++.++|+|  ++.+.++  .+|.++-.+..+...  ..+.....        ....+.|.|+|.+.++  .||.|+-++
T Consensus        42 ~~~~laf~P--~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           42 NFKFLFLSP--GGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TCSEEEECT--TSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred             cceeEEECC--CccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence            356889999  5655555  678877777654211  11111111        2478899999987777  569998887


Q ss_pred             CCCCe---EE---EEE-cceecceEEEEEECCCCCEEEEe
Q 020454          287 IRTGK---LL---GCF-IGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       287 ~~~~~---~~---~~~-~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      -.+..   .+   ..+ .+. =..+..|.+.|++.+-+..
T Consensus       114 pP~~~~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE
T ss_pred             CCcCCCCceeccccEeccCC-CCceEEEEECCCceEEEEe
Confidence            64311   11   011 111 2467899999999876665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.91  E-value=4.3  Score=32.90  Aligned_cols=146  Identities=12%  Similarity=0.042  Sum_probs=80.4

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEC--CCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeE
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v  239 (326)
                      ...+..+.+.+++.+++.+...+..+-+|-  .+-+.+..  .         .+..+..+.+.+  ++ .+...+.+|.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~--~---------~~~~~~~~~~~~--~g-~~~~~~~~G~~  227 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR--T---------TSRRLHNMGFTP--DG-RLWMIVNGGKI  227 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC--C---------SSSCEEEEEECT--TS-CEEEEETTTEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC--C---------CCCccceeEECC--CC-CEEEEeCCceE
Confidence            446888999998888877655444444442  11122211  1         123466777765  44 34555668888


Q ss_pred             EEEeCCCCCCceeEEe----ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCC
Q 020454          240 RLYDTSAQRRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTL  313 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~----~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~  313 (326)
                      ++.+...+ ..-..+.    .....+..+++.+++..++++. +|.+ ++....|+.-..+...  ....+.++.|.+++
T Consensus       228 ~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~  304 (327)
T 2xbg_A          228 AFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD  304 (327)
T ss_dssp             EEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred             EEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence            77742211 1011111    1123588899988877666654 6666 3444545433333311  13467888887555


Q ss_pred             CEEEEeccCccC
Q 020454          314 PIIASCGFLEAA  325 (326)
Q Consensus       314 ~~l~s~s~D~~~  325 (326)
                       .++.+|.+|.+
T Consensus       305 -~~~~~G~~G~i  315 (327)
T 2xbg_A          305 -QGFILGQKGIL  315 (327)
T ss_dssp             -EEEEECSTTEE
T ss_pred             -ceEEEcCCceE
Confidence             45666677653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.47  E-value=5.1  Score=32.91  Aligned_cols=61  Identities=10%  Similarity=0.035  Sum_probs=41.3

Q ss_pred             CceEEEEecC-------CCCeEEEEcCCCcEEEEECCCCeEEEE--EcceecceEEEEEECCCCCEEEEe
Q 020454          259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       259 ~~i~~v~~s~-------~~~~l~~g~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      .....++|..       +|.++++.-..+.|...++..++....  +-......+..|++.|++.+.++.
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            3566777753       466777777778898888887655433  211113579999999999876653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.45  E-value=4.4  Score=32.12  Aligned_cols=105  Identities=16%  Similarity=0.112  Sum_probs=56.9

Q ss_pred             CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY  242 (326)
Q Consensus       173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw  242 (326)
                      ++++++.|+.+     ..+.+||+.+.+-... ...+       .+..-.++...   ++++++.|+.+     ..+.+|
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~y  227 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMA-------TKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAY  227 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCC-------cccccceEEEE---CCEEEEEeCCCCCcccceEEEE
Confidence            56777788765     4588999887653322 1111       11111122222   45577777654     468999


Q ss_pred             eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeE
Q 020454          243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL  292 (326)
Q Consensus       243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~  292 (326)
                      |+.+. + -..+.   ........+.+  +++.++.|+.+     ..+.+||+++.+.
T Consensus       228 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          228 NIRTD-S-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             ETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             eCCCC-c-EEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            98864 2 12221   11111222233  56667777665     3588999987654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.63  E-value=5.6  Score=31.88  Aligned_cols=133  Identities=14%  Similarity=0.141  Sum_probs=65.3

Q ss_pred             CCCEEEEecCC-------CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC------CCeE
Q 020454          173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQV  239 (326)
Q Consensus       173 ~~~~l~sg~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~------dg~v  239 (326)
                      ++++++.|+.+       ..+.+||+.+.+-.... ..+       .+..-.++.. .  ++++++.|+.      -..+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p-------~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~  177 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLP-------IKVYGHNVIS-H--NGMIYCLGGKTDDKKCTNRV  177 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCS-------SCEESCEEEE-E--TTEEEEECCEESSSCBCCCE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCC-------CcccccEEEE-E--CCEEEEEcCCCCCCCccceE
Confidence            56777777754       34788888766533221 111       1111112222 2  4556666653      2358


Q ss_pred             EEEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEEE--EEcceecceEEEEEE
Q 020454          240 RLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIAR  309 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~  309 (326)
                      .+||+.+. . -..+.   ........+.+  +++.++.|+.+     ..+.+||+.+.+...  .++.. ......+. 
T Consensus       178 ~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~-  251 (318)
T 2woz_A          178 FIYNPKKG-D-WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSSISLVS-  251 (318)
T ss_dssp             EEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBSCEEEE-
T ss_pred             EEEcCCCC-E-EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccceEEEE-
Confidence            89998864 2 11221   11111122233  56666676643     357789998765432  12211 11111222 


Q ss_pred             CCCCCEEEEeccCc
Q 020454          310 HPTLPIIASCGFLE  323 (326)
Q Consensus       310 ~p~~~~l~s~s~D~  323 (326)
                       .++.+++.||.++
T Consensus       252 -~~~~i~v~GG~~~  264 (318)
T 2woz_A          252 -LAGSLYAIGGFAM  264 (318)
T ss_dssp             -ETTEEEEECCBCC
T ss_pred             -ECCEEEEECCeec
Confidence             2567778887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.00  E-value=13  Score=33.80  Aligned_cols=141  Identities=12%  Similarity=0.068  Sum_probs=70.6

Q ss_pred             CCCCEEEEecCCC--eEEEEECCCceeeeeecCCCCCCCCcCCCC-ceeeeEEeecCCCcEEEEEeC--C-----CeEEE
Q 020454          172 ISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTN--D-----HQVRL  241 (326)
Q Consensus       172 ~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~l~~~~~--d-----g~v~i  241 (326)
                      .++++++.||.++  .+.+||..+.+-.....  ...   +..+. .-.++.+.. ..+++++.|+.  +     ..+.+
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~--~g~---~p~~r~~~~a~v~~~-~~~~iyv~GG~~~~~~~~~~~v~~  572 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP--KDE---FFQNSLVSAGLEFDP-VSKQGIILGGGFMDQTTVSDKAII  572 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCC--SSG---GGGSCCBSCEEEEET-TTTEEEEECCBCTTSSCBCCEEEE
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccC--CCC---CCCcccceeEEEEeC-CCCEEEEECCcCCCCCeeeCcEEE
Confidence            3778888888765  68999988765322111  000   11111 112233332 12556677765  2     46889


Q ss_pred             EeCCCCCC-c---eeEEee----cCCceEEEEecCCCCeEEEEcC--------CCcEEEEECCCCeEEEEEcceecceE-
Q 020454          242 YDTSAQRR-P---VMSFDF----RETPIKAVAEEPDSFNIYIGNG--------SGDLASVDIRTGKLLGCFIGKCSGSI-  304 (326)
Q Consensus       242 wd~~~~~~-~---~~~~~~----~~~~i~~v~~s~~~~~l~~g~~--------dg~v~iwd~~~~~~~~~~~~~~~~~v-  304 (326)
                      ||+.+..- +   -..+..    .......+.+ .+++.++.|+.        ...+.+||+.+.+.. ....  .... 
T Consensus       573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~--p~~~~  648 (695)
T 2zwa_A          573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPI--SRRIW  648 (695)
T ss_dssp             EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCC--CHHHH
T ss_pred             EEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE-Eeec--ccccc
Confidence            99886530 0   111111    1111222223 33666777764        346999999987664 2221  1111 


Q ss_pred             ---------EEEEECCCCCEEEEeccC
Q 020454          305 ---------RSIARHPTLPIIASCGFL  322 (326)
Q Consensus       305 ---------~~l~~~p~~~~l~s~s~D  322 (326)
                               .+....+++++++.||..
T Consensus       649 ~~~~p~~~gh~~~~~~~g~i~v~GGg~  675 (695)
T 2zwa_A          649 EDHSLMLAGFSLVSTSMGTIHIIGGGA  675 (695)
T ss_dssp             HHSCCCCSSCEEECC---CEEEECCEE
T ss_pred             CCCCccceeeeEEEeCCCEEEEEeCCc
Confidence                     233444566788888753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.92  E-value=8.1  Score=31.23  Aligned_cols=140  Identities=10%  Similarity=0.019  Sum_probs=73.7

Q ss_pred             ceEEEEEcCCCCEEEEecCCCeE-EEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          164 TIAFSKVDISEKFSLFGGKGVEV-NVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      .+..+.+.+++..++.+. ++.| +-.|  .++.-......        .+..+..+.+.|  ++.+++++...+..+-.
T Consensus       123 ~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~--------~~~~~~~~~~~~--~~~~~~~g~~G~~~~S~  189 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQE--------AIGVMRNLNRSP--SGEYVAVSSRGSFYSTW  189 (327)
T ss_dssp             CEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECS--------CCCCEEEEEECT--TSCEEEEETTSSEEEEE
T ss_pred             CeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecC--------CCcceEEEEEcC--CCcEEEEECCCcEEEEe
Confidence            466777766666666654 4443 2222  22221111111        113467788876  45466655444444444


Q ss_pred             eC--CCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-c--eecceEEEEEECCCCCEEE
Q 020454          243 DT--SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-G--KCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       243 d~--~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~--~~~~~v~~l~~~p~~~~l~  317 (326)
                      |-  .+. +++  -......+..+++.++++.+++ +.+|.+++.+...++.-..+. .  .....+..+++.+++.+++
T Consensus       190 d~gG~tW-~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (327)
T 2xbg_A          190 EPGQTAW-EPH--NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL  265 (327)
T ss_dssp             CTTCSSC-EEE--ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred             CCCCCce-eEC--CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence            43  222 111  1233457888999998876554 567887776433243322222 1  0023588999998877776


Q ss_pred             Eec
Q 020454          318 SCG  320 (326)
Q Consensus       318 s~s  320 (326)
                      .+.
T Consensus       266 ~g~  268 (327)
T 2xbg_A          266 AGG  268 (327)
T ss_dssp             EES
T ss_pred             EeC
Confidence            654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=88.48  E-value=8.9  Score=31.16  Aligned_cols=209  Identities=9%  Similarity=0.016  Sum_probs=105.0

Q ss_pred             CCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCC
Q 020454          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG  183 (326)
Q Consensus       104 ~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d  183 (326)
                      ..|.++.......     .+..++..+.+|.++.-.+.......  . .-+....+.....+..+........|+..+..
T Consensus        95 e~i~~~~~~~~~~-----~e~~~v~~T~~G~iKr~~l~~~~~~~--r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~  166 (327)
T 3uc1_A           95 ERIAQVIQIRGYT-----DAPYLVLATRNGLVKKSKLTDFDSNR--S-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSAN  166 (327)
T ss_dssp             CCEEEEEEESSTT-----SSSEEEEEETTSEEEEEEGGGGCCCC--S-SCEESCBCCTTCCEEEEEEECTTCEEEEEETT
T ss_pred             CEEEEEEEeccCC-----CCCEEEEEcCCCEEEEeEHHHhhccc--c-CceEEEEECCCCEEEEEEEecCCCEEEEEECC
Confidence            4565554443211     35689999999999988876543211  1 12233344445555555554455666677888


Q ss_pred             CeEEEEECC--Cceeee-eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC------CceeEE
Q 020454          184 VEVNVWDLD--KCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSF  254 (326)
Q Consensus       184 ~~i~iwd~~--~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~  254 (326)
                      |.+..+...  .-.... ...+..  ...+.....|.++...+  ++..++..+..|.++.-.+....      .-+..+
T Consensus       167 G~~~rf~~~~~eip~~gr~a~Gv~--~i~L~~~d~Vv~~~~~~--~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~  242 (327)
T 3uc1_A          167 GQSIRFSATDEALRPMGRATSGVQ--GMRFNIDDRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV  242 (327)
T ss_dssp             SEEEEEECCTTTSCCCCTTSBCEE--SSCCCTTCCEEEEEECC--TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred             CeEEEEECcccccCcCCcCCCCee--eecCCCCCEEEEEEEEC--CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence            888888766  211111 111111  12222334465655543  33478899999999988754221      122223


Q ss_pred             eec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE-------EEEcceecceEEEEEECC-CCCEEEEeccCcc
Q 020454          255 DFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-------GCFIGKCSGSIRSIARHP-TLPIIASCGFLEA  324 (326)
Q Consensus       255 ~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~-------~~~~~~~~~~v~~l~~~p-~~~~l~s~s~D~~  324 (326)
                      ...  ...+..+....+...++..+.+|.+.-++...-+..       .-+.-.....|.++...+ +...+.+.+.+|+
T Consensus       243 ~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g~  322 (327)
T 3uc1_A          243 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANGA  322 (327)
T ss_dssp             CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC--------------
T ss_pred             EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCCc
Confidence            221  344555444444556777788888888876542211       111111144677776654 3455666766664

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.27  E-value=12  Score=32.22  Aligned_cols=106  Identities=8%  Similarity=0.062  Sum_probs=60.3

Q ss_pred             eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC--CCceeEEe---------ecCCceEEEEecCC---CCeEEEE-cC--
Q 020454          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFD---------FRETPIKAVAEEPD---SFNIYIG-NG--  278 (326)
Q Consensus       216 v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~---------~~~~~i~~v~~s~~---~~~l~~g-~~--  278 (326)
                      ...++|.|+.++ .|+++...|.|++++....  ..++..+.         ..+.....|+|+|+   ..+|++. +.  
T Consensus        16 P~~~a~~pdG~~-rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           16 PVGALHSGDGSQ-RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             EEEEECCSSSSC-CEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             ceEEEECCCCCe-EEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            347788884322 4666678899999975422  12222221         11456789999997   2344432 21  


Q ss_pred             C----------CcEEEEECCC----------CeEEEEEc--ceecceEEEEEECCCCCEEEEeccCc
Q 020454          279 S----------GDLASVDIRT----------GKLLGCFI--GKCSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       279 d----------g~v~iwd~~~----------~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      +          ..|.-|.+..          .+.+..+.  .. ......|+|.||+.+.++.|.-+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~-~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHR-KHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSS-SSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCC-cccCCcEeECCCCcEEEEeCCCC
Confidence            1          1344465532          23444433  11 23567999999998888777543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.98  E-value=8.7  Score=30.47  Aligned_cols=107  Identities=17%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             CCCEEEEecC---------CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----Ce
Q 020454          173 SEKFSLFGGK---------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQ  238 (326)
Q Consensus       173 ~~~~l~sg~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~  238 (326)
                      ++++++.|+.         -..+.+||+.+.+-... ...+       .+..-.++...   ++++++.|+.+     ..
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~  217 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMI-------EARKNHGLVFV---KDKIFAVGGQNGLGGLDN  217 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE-CCCS-------SCCBSCEEEEE---TTEEEEECCEETTEEBCC
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC-CCcc-------chhhcceEEEE---CCEEEEEeCCCCCCCCce
Confidence            5677777764         34588999887653222 1111       11111122222   45566776543     46


Q ss_pred             EEEEeCCCCC-CceeEEeecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeE
Q 020454          239 VRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL  292 (326)
Q Consensus       239 v~iwd~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~  292 (326)
                      +.+||+.+.. ..+..+.........+.+  +++.++.|+.+     ..+.+||+.+.+.
T Consensus       218 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          218 VEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             EEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             EEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            8899987641 011111111112233333  56677788754     5689999988754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.55  E-value=4.2  Score=35.74  Aligned_cols=104  Identities=9%  Similarity=-0.041  Sum_probs=66.2

Q ss_pred             CCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCCC-----C---c----eeEEeecCCceEEEEecCCCCeEEEEcC
Q 020454          212 TPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQR-----R---P----VMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~~-----~---~----~~~~~~~~~~i~~v~~s~~~~~l~~g~~  278 (326)
                      .+....++.++|  +|++++++ -.+.++.++|.+...     +   +    +.+.+..-++ ...+|.++|+-..+-..
T Consensus       321 ~pksPHGv~vsP--DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G~aYTtlfi  397 (638)
T 3sbq_A          321 VPKNPHGCNTSS--DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRGNAYTTLFI  397 (638)
T ss_dssp             ESSSCCCEEECT--TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSSEEEEEETT
T ss_pred             CCCCCcceeeCC--CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCCceEeeeee
Confidence            445566777887  56666554 468899999987320     1   1    2233334344 45699999955557778


Q ss_pred             CCcEEEEECCCC----------eEEEEEcceecceEEEEE-----ECCCCCEEEEe
Q 020454          279 SGDLASVDIRTG----------KLLGCFIGKCSGSIRSIA-----RHPTLPIIASC  319 (326)
Q Consensus       279 dg~v~iwd~~~~----------~~~~~~~~~~~~~v~~l~-----~~p~~~~l~s~  319 (326)
                      |..|.-|++...          ..+.++.-| ..+-...+     -.|+|++|++.
T Consensus       398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             cceEEEEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEe
Confidence            999999999753          456666654 33322221     24788888876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=86.31  E-value=11  Score=29.95  Aligned_cols=106  Identities=14%  Similarity=0.116  Sum_probs=56.3

Q ss_pred             CCCEEEEecCC-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----CeEEEE
Q 020454          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY  242 (326)
Q Consensus       173 ~~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----g~v~iw  242 (326)
                      ++++++.|+.+     ..+.+||+.+.+-... ...+       .+..-.++...   ++++++.|+.+     ..+.+|
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMN-------TIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCS-------SCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCC-------CccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence            56777777765     4588999877643222 1111       11111122222   45577777654     568999


Q ss_pred             eCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeEE
Q 020454          243 DTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLL  293 (326)
Q Consensus       243 d~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d-----g~v~iwd~~~~~~~  293 (326)
                      |+.+. + -..+.   ........+.+  +++.++.|+.+     ..+.+||+.+.+..
T Consensus       237 d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          237 DVETE-T-WTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             ETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             eCCCC-c-EEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            98764 1 11111   11111222222  56667777654     35788998876543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.30  E-value=6.1  Score=37.49  Aligned_cols=38  Identities=11%  Similarity=-0.023  Sum_probs=32.4

Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      .+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777888899999999999999999998877643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=85.11  E-value=23  Score=32.48  Aligned_cols=210  Identities=14%  Similarity=0.127  Sum_probs=110.0

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      +|..|..+| +..||-.+  . ..+....    ......|.++...         .++.|..++.+| +..||.......
T Consensus        34 ~lWigT~~G-L~ryDG~~--~-~~~~~~~----~~~~~~i~~i~~d---------~~g~lWigT~~G-l~~yd~~~~~f~   95 (758)
T 3ott_A           34 LIWIGSNKG-LFSYDGYS--T-QQHFTYG----ENNNTRIYCGVII---------DNTYLYMGTDNG-ILVYNYRADRYE   95 (758)
T ss_dssp             CEEEEESSC-EEEECSSC--E-EECSCTT----STTSSCEEEEEEE---------TTTEEEEEETTE-EEEEETTTTEEC
T ss_pred             CEEEEECCC-ccccCCCc--e-EEEEccC----CCCCceEEEEEEc---------CCCcEEEEeCCC-eEEEeCCCCEEE
Confidence            588888877 55666422  1 1111100    0122456665432         345787887665 678886543211


Q ss_pred             cccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCC
Q 020454          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  226 (326)
                      . .        .......|.++... ++ .|..++.+ .|..||..+.+... ..... .  .+ ....|.++....  +
T Consensus        96 ~-~--------~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~-~--~l-~~~~i~~i~~d~--~  156 (758)
T 3ott_A           96 Q-P--------ETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTS-FDTRR-N--GL-PNNTIYSIIRTK--D  156 (758)
T ss_dssp             C-C--------SCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEE-ECHHH-H--CC-SCSCEEEEEECT--T
T ss_pred             C-c--------ccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEE-eccCC-C--Cc-CCCeEEEEEEcC--C
Confidence            0 0        00012346666543 44 45555555 78889987654322 10000 0  00 112355555432  4


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCceeEEeec------CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~  300 (326)
                      + .|..++.+ -+..||.... . ...+...      ...|.++...+++..|..|+. +-+..+|..+++........ 
T Consensus       157 g-~lWigt~~-Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-  230 (758)
T 3ott_A          157 N-QIYVGTYN-GLCRYIPSNG-K-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-  230 (758)
T ss_dssp             C-CEEEEETT-EEEEEETTTT-E-EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-
T ss_pred             C-CEEEEeCC-CHhhCccCCC-c-eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-
Confidence            5 44556654 4777887654 2 2222211      224788888777776666764 46888998877543221112 


Q ss_pred             cceEEEEEECCCCCEEEEe
Q 020454          301 SGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       301 ~~~v~~l~~~p~~~~l~s~  319 (326)
                      ...|.+|....++.+.+..
T Consensus       231 ~~~i~~i~~d~~g~lWigT  249 (758)
T 3ott_A          231 NNSIKSLALDGNGDLLAGT  249 (758)
T ss_dssp             EEEEEEEEECTTCCEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEe
Confidence            4568899888877655543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=84.33  E-value=4.7  Score=35.78  Aligned_cols=59  Identities=12%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             eEEEEecCCCCeEEEEcCC------------CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          261 IKAVAEEPDSFNIYIGNGS------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       261 i~~v~~s~~~~~l~~g~~d------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      .-.|+|+|+|+++++-+.+            ..+.+.+..++++..-+.++....++.++|+||++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            3568999999877654432            2466667777887766666656789999999999988764

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.46  E-value=17  Score=29.56  Aligned_cols=204  Identities=9%  Similarity=0.037  Sum_probs=109.4

Q ss_pred             CCeEEEEecCCcEEEEeccccce-------eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454           65 DPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      ++.+++-+.+|.|+--.+.+-+.       ...+..       .+.+.+..+...+        ....++..+..|.++-
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~-------ke~D~~~~~~~~~--------t~d~ll~fT~~Gr~y~   67 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-------KQDDIVAHFFVCS--------THDLILFFTTQGRVYR   67 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCC-------CGGGCEEEEEEEE--------TTSEEEEEETTSEEEE
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc-------CCCCEEEEEEEeC--------CCCEEEEEeCCCeEEE
Confidence            44688899999999776532111       111111       2223444444333        4567888889998776


Q ss_pred             EEccccccccccccceE--EEEEccCCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          138 RSIEVTKVSAESSCSTV--KSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~---~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      .....-....-...|..  .+..+...+.|..+-.-+   +..+++..+.+|.++--.+..-+.... .+  .....+..
T Consensus        68 ~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G--~~~i~lke  144 (327)
T 3uc1_A           68 AKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GG--IVAVNLRD  144 (327)
T ss_dssp             EEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SC--EESCBCCT
T ss_pred             EEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-Cc--eEEEEECC
Confidence            65443221111111210  112334455666554433   467888999999999888764221111 00  00111212


Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC--CC---CCc---eeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS--AQ---RRP---VMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~--~~---~~~---~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~  283 (326)
                      ...+..+....  ....++..+..|.+..+...  .-   .+.   +.-+. .....|.++...+.+.+++..+..|.++
T Consensus       145 ~D~lv~~~~~~--~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~K  222 (327)
T 3uc1_A          145 NDELVGAVLCS--AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAK  222 (327)
T ss_dssp             TCCEEEEEEEC--TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEE
T ss_pred             CCEEEEEEEec--CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEE
Confidence            23344443333  23378888889988877665  21   111   11111 1234566666656667899999999999


Q ss_pred             EEECC
Q 020454          284 SVDIR  288 (326)
Q Consensus       284 iwd~~  288 (326)
                      .-.+.
T Consensus       223 rt~l~  227 (327)
T 3uc1_A          223 RTAIE  227 (327)
T ss_dssp             EEEGG
T ss_pred             EEEHH
Confidence            88764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.79  E-value=33  Score=33.39  Aligned_cols=38  Identities=11%  Similarity=-0.023  Sum_probs=31.2

Q ss_pred             ceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      .+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34455666788899999999999999999999887654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=81.60  E-value=19  Score=28.89  Aligned_cols=204  Identities=9%  Similarity=0.029  Sum_probs=106.8

Q ss_pred             CCeEEEEecCCcEEEEeccccceee-------eecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRV-------AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      ++++++.+.+|.|+--.+.+-+...       .+..       .+.+.+..+...+        ....++..+..|.++-
T Consensus         3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~-------ke~D~l~~~~~~~--------~~~~ll~fT~~G~~~~   67 (307)
T 1zi0_A            3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARI-------KEEDFIDRLLVAN--------THDHILCFSSRGRVYS   67 (307)
T ss_dssp             CEEEEEEETTSEEEEEECC---------------------------CCEEEEEEEE--------TTCEEEEEETTSEEEE
T ss_pred             CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeee-------CCCCEEEEEEEEC--------CCCEEEEEECCCEEEE
Confidence            4468889999999887664322111       1111       1224444443333        4567889999999777


Q ss_pred             EEccccccccccccceE--EEEEccCCCceEEEEEc---CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          138 RSIEVTKVSAESSCSTV--KSWNVCASGTIAFSKVD---ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      .....-........|..  ....+...+.|..+..-   .++.+++..+.+|.++--.+..-..... .+  .....+..
T Consensus        68 ~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-~G--~~~i~l~~  144 (307)
T 1zi0_A           68 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-AG--KVAIKLVD  144 (307)
T ss_dssp             EEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT-TC--EESSCCCT
T ss_pred             EEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc-CC--eEEEEECC
Confidence            76554322211122221  12234445566666442   2456778889999999887653211110 00  00011111


Q ss_pred             CCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC---CCC---ceeEEee-cCCceEEEEecCCCCeEEEEcCCCcEEEE
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA---QRR---PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASV  285 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~---~~~---~~~~~~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iw  285 (326)
                      ...+-.+....  +...++..+.+|.+..++...   ..+   -+.-+.. ....|..+...+++..+++.+..|.++-.
T Consensus       145 ~d~lv~~~~~~--~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~  222 (307)
T 1zi0_A          145 GDELIGVDLTS--GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT  222 (307)
T ss_dssp             TCCEEEEEEEC--TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeC--CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEE
Confidence            12233333332  233678888899888887532   111   1222222 23456666655556678888999999988


Q ss_pred             ECC
Q 020454          286 DIR  288 (326)
Q Consensus       286 d~~  288 (326)
                      ++.
T Consensus       223 ~~~  225 (307)
T 1zi0_A          223 AVA  225 (307)
T ss_dssp             CGG
T ss_pred             EHH
Confidence            774

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=80.58  E-value=9.2  Score=33.71  Aligned_cols=60  Identities=12%  Similarity=0.176  Sum_probs=42.9

Q ss_pred             ceEEEEecCCCCeEEEEcC------------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          260 PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       260 ~i~~v~~s~~~~~l~~g~~------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ....|.|+++|.+.++.+.            ...|..++..++++...+.+.....++.++|+||++.|+.+
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            3567899999987774332            12577778778877655554324579999999999988765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=80.21  E-value=20  Score=28.44  Aligned_cols=108  Identities=20%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             CCCEEEEecC-C-----CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-----eEEE
Q 020454          173 SEKFSLFGGK-G-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRL  241 (326)
Q Consensus       173 ~~~~l~sg~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-----~v~i  241 (326)
                      ++++++.|+. +     ..+.+||+.+.+-... ...+       .+..-.++...   ++++++.|+.++     .+.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p-------~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~  216 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQ-------TARSLFGATVH---DGRIIVAAGVTDTGLTSSAEV  216 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC-CCCS-------SCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC-CCCC-------CchhceEEEEE---CCEEEEEeccCCCCccceEEE
Confidence            5677778876 2     4688999887643221 1111       11111122222   455777776544     5888


Q ss_pred             EeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCC--------------CcEEEEECCCCeEEEE
Q 020454          242 YDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGC  295 (326)
Q Consensus       242 wd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~d--------------g~v~iwd~~~~~~~~~  295 (326)
                      ||+.+. + -..+.   ........+.+  +++.++.|+.+              ..+.+||+.+.+....
T Consensus       217 yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          217 YSITDN-K-WAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EECCCC-e-EEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            998764 2 12221   11111222233  56666677653              2477899888765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 19/136 (13%), Positives = 35/136 (25%), Gaps = 13/136 (9%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDT 244
             +WD+ +     T                  +  F    +   F  G++D   RL    
Sbjct: 208 AKLWDVREGMCRQTFTGHES---------DINAICFFP--NGNAFATGSDDATCRLFDLR 256

Query: 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304
           + Q     S D     I +V+       +  G    +    D       G   G     +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRV 315

Query: 305 RSIARHPTLPIIASCG 320
             +        +A+  
Sbjct: 316 SCLGVTDDGMAVATGS 331

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 4e-07
 Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 2/133 (1%)

Query: 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247
             +L +   +         S          S    S       ++G+ D  ++++D S  
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-T 236

Query: 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307
              +M+    +  ++ V        I        L   D +  + +          + S+
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSL 295

Query: 308 ARHPTLPIIASCG 320
             H T P + +  
Sbjct: 296 DFHKTAPYVVTGS 308

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 8/142 (5%)

Query: 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242
           G+ V    LD   ++W  +            +  +             V+G  D  V+++
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KDNILVSGNADSTVKIW 242

Query: 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI----G 298
           D    +         +        + +   +   +  G +   D++TG+ +   +    G
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 299 KCSGSIRSIARHPTLPIIASCG 320
              G +  I    T  + A   
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGS 324

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.66
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.62
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.19
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.01
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.91
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.88
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.85
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.77
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.69
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.66
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.49
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.43
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.24
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.07
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.05
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.02
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.9
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.78
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.49
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.31
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.24
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.2
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.13
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.01
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.88
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.59
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.17
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.91
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.45
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.31
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.39
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.52
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.76
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.6
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.5
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.06
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.55
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.53
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	86.61
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	86.55
d1suua_	304	DNA gyrase A C-terminal domain {Lyme disease spiro	84.51
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.37

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-35  Score=242.77  Aligned_cols=265  Identities=12%  Similarity=0.065  Sum_probs=206.4

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccce--eeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~--~~~~~   92 (326)
                      -.|++|+ +|.|+|||+.... .. ..........+...+.+++|.  +++++|++|+.||.|++||+.....  ...+.
T Consensus        64 ~~latg~-dg~V~iWd~~~~~-~~-~~~~~~~~~~h~~~I~~v~~s--~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  138 (337)
T d1gxra_          64 RHVYTGG-KGCVKVWDISHPG-NK-SPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELT  138 (337)
T ss_dssp             SEEEEEC-BSEEEEEETTSTT-CC-SCSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred             CEEEEEE-CCEEEEEEccCCc-cc-ceeEEeeecCCCCcEEEEEEc--CCCCEEEEeecccccccccccccccccccccc
Confidence            3466666 8999999998651 11 122222233444556666664  5567899999999999999864433  22222


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                              .+...+..+.+.+        +...+++++.++.+.+|++....        .. .....+...+.++++++
T Consensus       139 --------~~~~~v~~~~~~~--------~~~~l~s~~~d~~i~~~~~~~~~--------~~-~~~~~~~~~v~~l~~s~  193 (337)
T d1gxra_         139 --------SSAPACYALAISP--------DSKVCFSCCSDGNIAVWDLHNQT--------LV-RQFQGHTDGASCIDISN  193 (337)
T ss_dssp             --------CSSSCEEEEEECT--------TSSEEEEEETTSCEEEEETTTTE--------EE-EEECCCSSCEEEEEECT
T ss_pred             --------ccccccccccccc--------ccccccccccccccccccccccc--------cc-ccccccccccccccccc
Confidence                    3446677676544        56789999999999999986533        22 22334567899999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      +++++++++.|+.|++||+++++.+....          +...|.+++|+|  ++++|++++.|+.+++||++.. . ..
T Consensus       194 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----------~~~~i~~l~~~~--~~~~l~~~~~d~~i~i~d~~~~-~-~~  259 (337)
T d1gxra_         194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD----------FTSQIFSLGYCP--TGEWLAVGMESSNVEVLHVNKP-D-KY  259 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSS-C-EE
T ss_pred             cccccccccccccccccccccceeecccc----------cccceEEEEEcc--cccccceecccccccccccccc-c-cc
Confidence            99999999999999999999988776543          235688999998  4569999999999999999976 3 45


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ....|...|++++|+|++++|++|+.||.|++||+.+++.+..+. | .+.|.+++|+|++++|++||.||.+
T Consensus       260 ~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~t~s~D~~I  330 (337)
T d1gxra_         260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-C-CCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            666788999999999999999999999999999999999988766 5 8899999999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-34  Score=236.48  Aligned_cols=266  Identities=11%  Similarity=0.118  Sum_probs=214.9

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.||.|+|||+.++     +....+..+  ...+..+.+  .+.+.+++++..++.+.+|+....+....+.  
T Consensus        30 ~~l~s~s~Dg~i~iWd~~~~-----~~~~~~~~h--~~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   98 (317)
T d1vyhc1          30 SVMVSASEDATIKVWDYETG-----DFERTLKGH--TDSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRTMH--   98 (317)
T ss_dssp             SEEEEEESSSCEEEEETTTC-----CCCEEECCC--SSCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEECCC--
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CEEEEEeCC--CCcEEEEee--ecccccccccccccccccccccccccccccc--
Confidence            45899999999999999877     444455433  334445554  4556689999999999999987766544433  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                            .+...+..+.+.+        ++..+++++.|+.+++|++....        .+..+. .+...+.++++++++
T Consensus        99 ------~~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~  155 (317)
T d1vyhc1          99 ------GHDHNVSSVSIMP--------NGDHIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDG  155 (317)
T ss_dssp             ------CCSSCEEEEEECS--------SSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTS
T ss_pred             ------cccccceeeeccC--------CCceEEeeccCcceeEeecccce--------eeeEEc-cCCCcceeeecccCC
Confidence                  4446677676655        56789999999999999987543        344444 346689999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec------------------CCCcEEEEEeCC
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI------------------DDHRKFVAGTND  236 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------------~~~~~l~~~~~d  236 (326)
                      ++|++++.|+.|++|++.+++....+..+..         .+..+.|.|.                  ..+..+++++.|
T Consensus       156 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  226 (317)
T d1vyhc1         156 TLIASCSNDQTVRVWVVATKECKAELREHRH---------VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  226 (317)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSS---------CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEeeccceeeEEEecCCC---------CceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence            9999999999999999999888877766542         2444444332                  134579999999


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  316 (326)
                      +.|++||++++ +++.++..|...|++++|+|++++|++|+.||.|++||+++++++..+.+| .++|++++|+|++++|
T Consensus       227 ~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~V~~~~~s~~~~~l  304 (317)
T d1vyhc1         227 KTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYV  304 (317)
T ss_dssp             SEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSCE
T ss_pred             CEEEEEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEE
Confidence            99999999987 678899999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             EEeccCccC
Q 020454          317 ASCGFLEAA  325 (326)
Q Consensus       317 ~s~s~D~~~  325 (326)
                      +|||.||.+
T Consensus       305 ~s~s~Dg~i  313 (317)
T d1vyhc1         305 VTGSVDQTV  313 (317)
T ss_dssp             EEEETTSEE
T ss_pred             EEEeCCCeE
Confidence            999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.1e-35  Score=238.91  Aligned_cols=268  Identities=10%  Similarity=0.033  Sum_probs=200.0

Q ss_pred             CCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeee
Q 020454           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        12 ~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~   91 (326)
                      +|.-..++...++.+.+|++...     .....+..  +...+.++.|  ++++++|++|+.||+|+|||+.+++.....
T Consensus        26 ~~~g~~l~~~~~~~v~i~~~~~~-----~~~~~~~~--H~~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          26 TPAGDKIQYCNGTSVYTVPVGSL-----TDTEIYTE--HSHQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             CTTSSEEEEEETTEEEEEETTCS-----SCCEEECC--CSSCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             cCCCCEEEEEeCCEEEEEECCCC-----ceeEEEcC--CCCCEEEEEE--eCCCCeEeccccCceEeeeeeecccccccc
Confidence            34433344445667999999866     34334443  3344555555  456779999999999999999877654332


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC--CcEEEEEccccccccccccceEEEEEccCCCceEEEE
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~--g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  169 (326)
                      ..      +.+.++|.++.+.+        ++..+++++.+  ..+++|+++.....        ..+. .+...|.+++
T Consensus        97 ~~------~~~~~~v~~v~~s~--------d~~~l~~~~~~~~~~~~v~~~~~~~~~--------~~l~-~h~~~v~~v~  153 (311)
T d1nr0a1          97 TI------PVFSGPVKDISWDS--------ESKRIAAVGEGRERFGHVFLFDTGTSN--------GNLT-GQARAMNSVD  153 (311)
T ss_dssp             EE------ECSSSCEEEEEECT--------TSCEEEEEECCSSCSEEEEETTTCCBC--------BCCC-CCSSCEEEEE
T ss_pred             cc------ccccCccccccccc--------ccccccccccccccccccccccccccc--------cccc-cccccccccc
Confidence            21      14557899998755        55678877754  55899998754321        1111 2456899999


Q ss_pred             EcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC
Q 020454          170 VDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (326)
Q Consensus       170 ~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~  248 (326)
                      |+|+++ .|++|+.|+.|++||+++++.......|.         ..|+++.|+|  +++++++++.|+.|++||++.. 
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~v~~~p--~~~~l~~~~~d~~v~~~d~~~~-  221 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT---------KFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDG-  221 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-
T ss_pred             ccccceeeeccccccccccccccccccccccccccc---------ccccccccCc--cccccccccccccccccccccc-
Confidence            999987 48889999999999999998888776654         5588999998  5669999999999999999876 


Q ss_pred             CceeEEe-------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceec--ceEEEEEECCCCCEEEEe
Q 020454          249 RPVMSFD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS--GSIRSIARHPTLPIIASC  319 (326)
Q Consensus       249 ~~~~~~~-------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~~p~~~~l~s~  319 (326)
                      ..+..+.       +|...|++++|+|++++|++|+.||.|+|||++++++++.+..|..  ..+.++.|  ++..|+++
T Consensus       222 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~  299 (311)
T d1nr0a1         222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSI  299 (311)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEE
T ss_pred             cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEE
Confidence            4444443       4678899999999999999999999999999999999999886522  23445555  55679999


Q ss_pred             ccCccC
Q 020454          320 GFLEAA  325 (326)
Q Consensus       320 s~D~~~  325 (326)
                      |.||.+
T Consensus       300 s~dG~i  305 (311)
T d1nr0a1         300 SANGFI  305 (311)
T ss_dssp             ETTCCE
T ss_pred             ECCCEE
Confidence            999975

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-34  Score=240.46  Aligned_cols=271  Identities=17%  Similarity=0.186  Sum_probs=203.2

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccC----------------CCCCceEEEEEeeeCCCCCeEEEEecCCcEEE
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD----------------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i   79 (326)
                      .|++| .||.|+||++.++     +....+..                +.+...+.+++|  ++++++|++|+.||.|++
T Consensus        76 ~lasg-~d~~i~iW~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~~~~l~s~~~dg~v~i  147 (388)
T d1erja_          76 YLATG-CNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRI  147 (388)
T ss_dssp             EEEEE-CBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEE--CTTSSEEEEEETTSCEEE
T ss_pred             EEEEE-eCCeEEEEEeccc-----ceEeeecccccccccccccccccccCCCCCEEEEEE--CCCCCcceeccccccccc
Confidence            45565 4899999999876     33333221                223334555555  456779999999999999


Q ss_pred             EeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc
Q 020454           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (326)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~  159 (326)
                      |+...++.+....        .+...|.++.+..        ....+++++.++.+++|++....        .+.... 
T Consensus       148 ~~~~~~~~~~~~~--------~h~~~v~~~~~~~--------~~~~~~~~~~~~~i~~~d~~~~~--------~~~~~~-  202 (388)
T d1erja_         148 WDIENRKIVMILQ--------GHEQDIYSLDYFP--------SGDKLVSGSGDRTVRIWDLRTGQ--------CSLTLS-  202 (388)
T ss_dssp             EETTTTEEEEEEC--------CCSSCEEEEEECT--------TSSEEEEEETTSEEEEEETTTTE--------EEEEEE-
T ss_pred             ccccccccccccc--------ccccccccccccc--------ccccccccccceeeeeeeccccc--------cccccc-
Confidence            9998888766654        5567888888755        56789999999999999976533        222222 


Q ss_pred             cCCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCe
Q 020454          160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (326)
Q Consensus       160 ~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~  238 (326)
                       ......++.+++ ++++|++|+.|+.|++||++++.....+.......  ..+...|++++|+|  ++++|++++.|+.
T Consensus       203 -~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~--~~~~l~s~~~d~~  277 (388)
T d1erja_         203 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKDSVYSVVFTR--DGQSVVSGSLDRS  277 (388)
T ss_dssp             -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred             -cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc--cCCCCCEEEEEECC--CCCEEEEEECCCc
Confidence             233444555554 77999999999999999999988776654332211  22456799999998  5669999999999


Q ss_pred             EEEEeCCCCCC-----------ceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEE
Q 020454          239 VRLYDTSAQRR-----------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (326)
Q Consensus       239 v~iwd~~~~~~-----------~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  307 (326)
                      |++||++....           .......|...|++++|+|++++|++|+.||.|++||+++++++.++++| .+.|.++
T Consensus       278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H-~~~V~~~  356 (388)
T d1erja_         278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISV  356 (388)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEE
T ss_pred             EEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC-CCCEEEE
Confidence            99999875422           23344567889999999999999999999999999999999999999998 9999999


Q ss_pred             EE------CCCCCEEEEeccCccC
Q 020454          308 AR------HPTLPIIASCGFLEAA  325 (326)
Q Consensus       308 ~~------~p~~~~l~s~s~D~~~  325 (326)
                      ++      +|++++|+|||.||.+
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EEecCcccCCCCCEEEEEeCCCEE
Confidence            75      5789999999999976

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-33  Score=231.78  Aligned_cols=246  Identities=13%  Similarity=0.161  Sum_probs=198.2

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+...+.+++|.  +.+++|++|+.||+|+|||+.+++.+..+.        .+..+|.++.+.+        ++..+++
T Consensus        53 GH~~~I~~l~~s--~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--------~~~~~v~~v~~~~--------~~~~l~~  114 (340)
T d1tbga_          53 GHLAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAP--------SGNYVAC  114 (340)
T ss_dssp             CCSSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEEE--------CSCSCEEEEEECT--------TSSEEEE
T ss_pred             CCCCCEEEEEEC--CCCCEEEEEECCCceeeeecccceeEEEEe--------cccccEEeeEeec--------cceeeee
Confidence            345556666664  456699999999999999999998877766        4557899998766        6678999


Q ss_pred             EecCCcEEEEEccccccc--------------------------cccccceEEEEEc----------cCCCceEEEEEcC
Q 020454          129 CTTKGKASMRSIEVTKVS--------------------------AESSCSTVKSWNV----------CASGTIAFSKVDI  172 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~--------------------------~~~~~~~~~~~~~----------~~~~~v~~~~~~~  172 (326)
                      ++.|+.+.+|+.......                          ....+.....+..          .....+....+.+
T Consensus       115 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (340)
T d1tbga_         115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP  194 (340)
T ss_dssp             EETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred             ecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc
Confidence            999999999996653210                          0001111222221          1123477888888


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      .+.++++|+.|+.|++||+++++.+..+..|.         ..|++++|+|  ++++|++++.|+.|++||++.. ..+.
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~---------~~i~~v~~~p--~~~~l~s~s~d~~i~~~~~~~~-~~~~  262 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICFFP--NGNAFATGSDDATCRLFDLRAD-QELM  262 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTT-EEEE
T ss_pred             ccceeEEeecCceEEEEECCCCcEEEEEeCCC---------CCeEEEEECC--CCCEEEEEeCCCeEEEEeeccc-cccc
Confidence            99999999999999999999999988877654         5689999998  5669999999999999999976 4444


Q ss_pred             EEe--ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          253 SFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       253 ~~~--~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+.  .+...|++++|+|++++|++|+.||.|++||+.+++++..+.+| .++|++++|+|++++|+|||.||.+
T Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H-~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             ccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEccCCEE
Confidence            443  45667999999999999999999999999999999999999998 9999999999999999999999976

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-32  Score=228.62  Aligned_cols=280  Identities=10%  Similarity=0.012  Sum_probs=199.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.+++|+.+|.|+||+..++   .......+.  .+...+.++.|.  +++++|++|+.|++|+|||+.++.....+.. 
T Consensus        20 ~~la~~~~~~~i~iw~~~~~---~~~~~~~l~--gH~~~V~~l~fs--p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-   91 (371)
T d1k8kc_          20 TQIAICPNNHEVHIYEKSGN---KWVQVHELK--EHNGQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-   91 (371)
T ss_dssp             SEEEEECSSSEEEEEEEETT---EEEEEEEEE--CCSSCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEECCCC---CEEEEEEec--CCCCCEEEEEEC--CCCCEEEEEECCCeEEEEeeccccccccccc-
Confidence            46778999999999999865   111222333  334455566664  4556999999999999999987766555443 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           ..+...|.++.+.+        ++..+++++.++.+++|+++....     ..........+...|.+++|+|++
T Consensus        92 -----~~~~~~v~~i~~~p--------~~~~l~~~s~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          92 -----LRINRAARCVRWAP--------NEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             -----CCCSSCEEEEEECT--------TSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECTTS
T ss_pred             -----cccccccccccccc--------ccccceeecccCcceeeeeecccc-----cccccccccccccccccccccccc
Confidence                 24557899888765        567899999999999999875431     112222233456789999999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCC-------CCC--CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCC
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------PKN--SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-------~~~--~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~  245 (326)
                      ++|++|+.|+.|++||+............       ...  .....+..+|.+++|+|  ++++|++++.|+.|++||+.
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA--NGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS--SSSEEEEEETTTEEEEEEGG
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec--ccccccccccCCcceEEeee
Confidence            99999999999999998754321111000       000  00112446799999998  56699999999999999999


Q ss_pred             CCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC--CeEEE-----------------------------
Q 020454          246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKLLG-----------------------------  294 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~--~~~~~-----------------------------  294 (326)
                      .. +.+..+..|..+|.+++|+|++++|++|. |+.+++|....  +....                             
T Consensus       232 ~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (371)
T d1k8kc_         232 KK-MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS  309 (371)
T ss_dssp             GT-TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred             cc-cceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeE
Confidence            77 67888999999999999999998887765 66666655432  21100                             


Q ss_pred             ---------EE-cceecceEEEEEECCCC----CEEEEeccCccC
Q 020454          295 ---------CF-IGKCSGSIRSIARHPTL----PIIASCGFLEAA  325 (326)
Q Consensus       295 ---------~~-~~~~~~~v~~l~~~p~~----~~l~s~s~D~~~  325 (326)
                               .+ ..| .+.|+++++.|.+    ..|+|+|.||.+
T Consensus       310 ~~~~~~~~~~~~~~H-~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v  353 (371)
T d1k8kc_         310 SEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGM  353 (371)
T ss_dssp             --------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred             Eeccccccceecccc-cCCEEEEEEeCCCCcceEEEEEEcCCCeE
Confidence                     00 125 7889999998644    368999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-32  Score=227.92  Aligned_cols=268  Identities=14%  Similarity=0.187  Sum_probs=198.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.||.|+|||+.++     +....+..+.  ..+.++++.+   +.+|++|+.||+|++|+....+........
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~-----~~~~~l~~H~--~~V~~l~~s~---~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~   93 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINK-----KFLLQLSGHD--GGVWALKYAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGH   93 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTT-----EEEEEEECCS--SCEEEEEEET---TTEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----cEEEEEECCC--CCEEEEEEcC---CCEEEEEecccccccccccccccccccccc
Confidence            57999999999999999887     5666665443  4455666643   347999999999999999877765544431


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc-----------------------------
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------------------  145 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~-----------------------------  145 (326)
                            ............+        +...+++++.|+.+++|++.....                             
T Consensus        94 ------~~~~~~~~~~~~~--------~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          94 ------NSTVRCLDIVEYK--------NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ------SSCEEEEEEEEET--------TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ------ccccccccccccc--------ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence                  1112222222222        446789999999999999865321                             


Q ss_pred             ---------------ccccccceEEEEEccCC----------CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeee
Q 020454          146 ---------------SAESSCSTVKSWNVCAS----------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (326)
Q Consensus       146 ---------------~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  200 (326)
                                     ..+..++.++.|+....          ..+.++.++|+++++++++.|+.|++||++++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                           12234567777876432          34778899999999999999999999999999998888


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEE-ecCCCCeEEEEcCC
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA-EEPDSFNIYIGNGS  279 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~-~s~~~~~l~~g~~d  279 (326)
                      +.|.         ..|+++++++    ++|++++.||.|++||+++. .  ..+..|...+.+++ ++++++++++| .|
T Consensus       240 ~~h~---------~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~~g-~d  302 (355)
T d1nexb2         240 QGHT---------ALVGLLRLSD----KFLVSAAADGSIRGWDANDY-S--RKFSYHHTNLSAITTFYVSDNILVSG-SE  302 (355)
T ss_dssp             CCCS---------SCCCEEEECS----SEEEEECTTSEEEEEETTTC-C--EEEEEECTTCCCCCEEEECSSEEEEE-ET
T ss_pred             cccc---------cccccccccc----ceeeeeeccccccccccccc-c--eecccccCCceEEEEEcCCCCEEEEE-eC
Confidence            7765         4577888754    38999999999999999866 2  44555666666554 56667666665 58


Q ss_pred             CcEEEEECCCCeEEEE-EcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          280 GDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       280 g~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |.|++||+++++++.. +.+| .++|.+++|+|+ .++++++.||.+
T Consensus       303 ~~i~vwd~~tg~~~~~~~~~~-~~~V~~v~~~~~-~~~~~~s~dg~~  347 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHANILKD-ADQIWSVNFKGK-TLVAAVEKDGQS  347 (355)
T ss_dssp             TEEEEEETTTCCBCCSCTTTT-CSEEEEEEEETT-EEEEEEESSSCE
T ss_pred             CEEEEEECCCCCEEEEEecCC-CCCEEEEEEcCC-eEEEEEECCCcE
Confidence            9999999999998864 5666 999999999987 478899999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-32  Score=229.01  Aligned_cols=232  Identities=9%  Similarity=0.083  Sum_probs=181.9

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      ++++++||+|+.||.|+|||..+++.......      +.|.++|.++.+.+        ++++|++++.|+.|++|++.
T Consensus        16 s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l------~gH~~~V~~l~fsp--------~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_          16 NKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL------KEHNGQVTGVDWAP--------DSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CTTSSEEEEECSSSEEEEEEEETTEEEEEEEE------ECCSSCEEEEEEET--------TTTEEEEEETTSCEEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe------cCCCCCEEEEEECC--------CCCEEEEEECCCeEEEEeec
Confidence            45667999999999999999977764332221      26778999999765        56789999999999999986


Q ss_pred             ccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeE
Q 020454          142 VTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (326)
                      ...        ...... ..+...|.+++|+|++++|++|+.|+.|++|++.............     ..+...|.+++
T Consensus        82 ~~~--------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~-----~~~~~~v~~v~  148 (371)
T d1k8kc_          82 GRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLD  148 (371)
T ss_dssp             TTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-----TTCCSCEEEEE
T ss_pred             ccc--------cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccc-----ccccccccccc
Confidence            533        112222 2346789999999999999999999999999987654332221111     01235689999


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCC-----------------CceeEEeecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQR-----------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~-----------------~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~  283 (326)
                      |+|  ++++|++++.|++|++||.....                 ..+.....|...|.+++|+|++++|++++.|+.|+
T Consensus       149 ~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~  226 (371)
T d1k8kc_         149 WHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC  226 (371)
T ss_dssp             ECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             ccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcce
Confidence            998  56799999999999999976431                 12344556778899999999999999999999999


Q ss_pred             EEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +||+++++.+..+..| ..+|.+++|+|++++|++|+ |+.
T Consensus       227 iwd~~~~~~~~~~~~~-~~~v~s~~fs~d~~~la~g~-d~~  265 (371)
T d1k8kc_         227 LADADKKMAVATLASE-TLPLLAVTFITESSLVAAGH-DCF  265 (371)
T ss_dssp             EEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEET-TSS
T ss_pred             EEeeecccceeeeecc-cccceeeeecCCCCEEEEEc-CCc
Confidence            9999999999999998 99999999999998888765 543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-31  Score=219.30  Aligned_cols=268  Identities=13%  Similarity=0.118  Sum_probs=200.4

Q ss_pred             eecCcccEEEEEecCCc---CCCc---ceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           19 TFDSLGLIKVIEARGEH---GGVP---KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        19 ~~~~~G~i~vw~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      .-+.+|.++........   .+.+   +.+..+   .+...+.++.+  ++++++|++|+ ||.|+|||+.++.....+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~H~~~V~~v~f--s~~g~~latg~-dg~V~iWd~~~~~~~~~~~   89 (337)
T d1gxra_          16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTL---NHGEVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSPVS   89 (337)
T ss_dssp             EECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE---CCSSCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred             cCCCCCCEEeeccCCcceecCCCCCCceEEEEC---CCCCcEEEEEE--CCCCCEEEEEE-CCEEEEEEccCCcccceeE
Confidence            34566677766655431   1111   112222   23334445555  34667899987 8999999997655433322


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                      ....   ..|.+.|.++.+.+        ++..|++++.||.|++|++.....       .+...-..+...+..+.++|
T Consensus        90 ~~~~---~~h~~~I~~v~~s~--------dg~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~  151 (337)
T d1gxra_          90 QLDC---LNRDNYIRSCKLLP--------DGCTLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISP  151 (337)
T ss_dssp             EEEC---SCTTSBEEEEEECT--------TSSEEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEECT
T ss_pred             Eeee---cCCCCcEEEEEEcC--------CCCEEEEeeccccccccccccccc-------cccccccccccccccccccc
Confidence            2111   25668899999866        667899999999999999764331       11111223466899999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee
Q 020454          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (326)
Q Consensus       173 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  252 (326)
                      ++.++++++.|+.|++||+++++.......+.         ..|++++|++  ++..+++++.|+.|++||++++ +.+.
T Consensus       152 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~---------~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~-~~~~  219 (337)
T d1gxra_         152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDISN--DGTKLWTGGLDNTVRSWDLREG-RQLQ  219 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTT-EEEE
T ss_pred             cccccccccccccccccccccccccccccccc---------cccccccccc--cccccccccccccccccccccc-eeec
Confidence            99999999999999999999988877766544         5588999987  5669999999999999999977 4555


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+ .+...|.+++|+|++++|++|+.||.+++||+++++... ...| ...|++++|+|++++|++++.||.+
T Consensus       220 ~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~-~~~i~~v~~s~~g~~l~s~s~Dg~i  289 (337)
T d1gxra_         220 QH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH-ESCVLSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             EE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cc-ccccceEEEEEcccccccceecccccccccccccccccc-cccc-ccccceEEECCCCCEEEEEeCCCeE
Confidence            55 467899999999999999999999999999999887754 5566 9999999999999999999999875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-31  Score=218.83  Aligned_cols=228  Identities=13%  Similarity=0.063  Sum_probs=186.4

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcc
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~  141 (326)
                      ++.++.|+.+ .++.|.+|++.+.+....+.        .|.+.|.++.+.+        ++.+|++++.||.|++|++.
T Consensus        26 ~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~--------~H~~~v~~~~~sp--------~g~~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          26 TPAGDKIQYC-NGTSVYTVPVGSLTDTEIYT--------EHSHQTTVAKTSP--------SGYYCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             CTTSSEEEEE-ETTEEEEEETTCSSCCEEEC--------CCSSCEEEEEECT--------TSSEEEEEETTSEEEEEESS
T ss_pred             cCCCCEEEEE-eCCEEEEEECCCCceeEEEc--------CCCCCEEEEEEeC--------CCCeEeccccCceEeeeeee
Confidence            3455567776 46789999998887766664        5668999999766        66799999999999999987


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeee
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (326)
                      .....      ...... .+...|.+++|+|++++|++++.  +..+++|++++++....+..|.         ..|+++
T Consensus        89 ~~~~~------~~~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~---------~~v~~v  152 (311)
T d1nr0a1          89 QTTHI------LKTTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA---------RAMNSV  152 (311)
T ss_dssp             STTCC------EEEEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS---------SCEEEE
T ss_pred             ccccc------cccccc-cccCccccccccccccccccccccccccccccccccccccccccccc---------cccccc
Confidence            64421      111222 34678999999999999998875  4569999999888777665543         568999


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc--
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--  297 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~--  297 (326)
                      +|+|.. ...|++|+.|+.|++||+++. +....+..|..+|++++|+|++++|++|+.||.|++||+++++.+..+.  
T Consensus       153 ~~~~~~-~~~l~sgs~d~~i~i~d~~~~-~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~  230 (311)
T d1nr0a1         153 DFKPSR-PFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD  230 (311)
T ss_dssp             EECSSS-SCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred             cccccc-eeeeccccccccccccccccc-ccccccccccccccccccCcccccccccccccccccccccccccccccccc
Confidence            999852 336889999999999999977 5677888899999999999999999999999999999999988877664  


Q ss_pred             -----ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          298 -----GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       298 -----~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                           +| .+.|++++|+|++++|++||.||.+
T Consensus       231 ~~~~~~h-~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         231 SLKNVAH-SGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             TSSSCSS-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccccccc-cccccccccCCCCCEEEEEeCCCeE
Confidence                 45 7899999999999999999999965

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-32  Score=230.13  Aligned_cols=290  Identities=11%  Similarity=0.041  Sum_probs=185.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE-----EEEeeeCCCCCeEEEEecCCcEEEEeccccceee
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL-----AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~   89 (326)
                      -.+++++.||.|||||....+...+ .........+...+.     ...........++++++.||.|++|++.......
T Consensus        25 ~~l~S~S~D~~iriWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~  103 (393)
T d1sq9a_          25 SFTVSCSGDGYLKVWDNKLLDNENP-KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK  103 (393)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCG-GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred             CEEEEEECCCeEEEEECCCCCCCcc-cceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCcee
Confidence            5799999999999999776522111 100111111111111     1111111223367889999999999986443322


Q ss_pred             eecc--cCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc----ccccccceEEEEE-----
Q 020454           90 AISN--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----SAESSCSTVKSWN-----  158 (326)
Q Consensus        90 ~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~----~~~~~~~~~~~~~-----  158 (326)
                      .+..  ........+...+..+.+.....   ......+++++.||.+.+|++.....    .............     
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (393)
T d1sq9a_         104 KVIFEKLDLLDSDMKKHSFWALKWGASND---RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP  180 (393)
T ss_dssp             CEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCS
T ss_pred             eeeccccceeeeccCCCceEEEEEecCCC---cccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecc
Confidence            2111  00010112223344444322110   01246789999999999999864321    1111111111111     


Q ss_pred             ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC-
Q 020454          159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-  237 (326)
Q Consensus       159 ~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg-  237 (326)
                      ......+.+++++|++ +|++|+.|++|++||+++++++..+.....   ...|..+|++++|+|  ++++|++++.|+ 
T Consensus       181 ~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~---l~~h~~~V~~l~~sp--dg~~l~sgs~D~t  254 (393)
T d1sq9a_         181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS---MINNSNSIRSVKFSP--QGSLLAIAHDSNS  254 (393)
T ss_dssp             SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC------CCCCCEEEEEECS--STTEEEEEEEETT
T ss_pred             cCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccc---cccccceEEEccccc--ccceeeeecCCCC
Confidence            1223458899999987 889999999999999999988776654321   122557899999998  677999999887 


Q ss_pred             --eEEEEeCCCCCCceeEEe-------------ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecc
Q 020454          238 --QVRLYDTSAQRRPVMSFD-------------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       238 --~v~iwd~~~~~~~~~~~~-------------~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                        .|++||+.++ +.+..+.             +|...|++++|+|++++|++|+.|++|++||+++++++.++++| .+
T Consensus       255 ~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH-~~  332 (393)
T d1sq9a_         255 FGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH-CD  332 (393)
T ss_dssp             EEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-GG
T ss_pred             cceeeecccccc-eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc-CC
Confidence              5999999876 4455443             68889999999999999999999999999999999999999998 66


Q ss_pred             eEE----EEEECCCCCEE
Q 020454          303 SIR----SIARHPTLPII  316 (326)
Q Consensus       303 ~v~----~l~~~p~~~~l  316 (326)
                      .|.    .++|+|++..+
T Consensus       333 ~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         333 DIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             GCSSGGGCCCBCTTSCBC
T ss_pred             cccCCccEEEECCCCCEE
Confidence            554    24444444433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-30  Score=216.04  Aligned_cols=264  Identities=14%  Similarity=0.211  Sum_probs=191.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+|+||+.||.|+|||+.++     +....+..+  ...+.++.+.+    ++|++|+.|+.+++|+............ 
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~~-----~~~~~~~~h--~~~V~~v~~~~----~~l~s~s~D~~~~~~~~~~~~~~~~~~~-   95 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVTG-----KCLRTLVGH--TGGVWSSQMRD----NIIISGSTDRTLKVWNAETGECIHTLYG-   95 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTC-----CEEEECCCC--SSCEEEEEEET----TEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CEEEEEeCC--CCCEEEEEeCC----Cccccceecccccccccccccceecccc-
Confidence            46999999999999999877     555555543  44555666642    3899999999999999976655433332 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccc---------------------ccccccce
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------------SAESSCST  153 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~---------------------~~~~~~~~  153 (326)
                             ....+.....          ....+..+..++.+.+|+......                     ..+..++.
T Consensus        96 -------~~~~~~~~~~----------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          96 -------HTSTVRCMHL----------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             -------CSSCEEEEEE----------ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             -------cceeEeeeec----------ccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence                   1123332222          234566666777777776554321                     23344566


Q ss_pred             EEEEEccCCCc--------eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC
Q 020454          154 VKSWNVCASGT--------IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (326)
Q Consensus       154 ~~~~~~~~~~~--------v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  225 (326)
                      +++|+......        .....+.+++.+|++|+.|+.|++||++.++.+.....+.         ..+.++.+.+  
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~~~--  227 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---------SLTSGMELKD--  227 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC---------SCEEEEEEET--
T ss_pred             EEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccc---------cceeEEecCC--
Confidence            66666543322        2233445578999999999999999999999888777654         4466776653  


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCceeEEee---cCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-----
Q 020454          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----  297 (326)
Q Consensus       226 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-----  297 (326)
                        ++|++++.|+.|++||+... +....+..   |...+.++.+  +++++++|+.||.|++||++++++++.+.     
T Consensus       228 --~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~  302 (342)
T d2ovrb2         228 --NILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG  302 (342)
T ss_dssp             --TEEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred             --CEEEEEcCCCEEEEEecccc-cccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCC
Confidence              39999999999999999876 44555553   4456666666  56799999999999999999999988774     


Q ss_pred             ceecceEEEEEECCCCCEEEEeccCcc
Q 020454          298 GKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       298 ~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      +| .+.|++++|+|++.+|++|+.||.
T Consensus       303 ~~-~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         303 GS-GGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             GG-TCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CC-CCCEEEEEECCCCCEEEEEeCCCC
Confidence            45 788999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.9e-31  Score=214.66  Aligned_cols=264  Identities=14%  Similarity=0.103  Sum_probs=188.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.||.|++||++++     +....+. ..+...+.++.+.++  + .+++++.|+.+++|+.............
T Consensus        25 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~-~~h~~~v~~v~~~~~--g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~   95 (299)
T d1nr0a2          25 KTLFSADAEGHINSWDISTG-----ISNRVFP-DVHATMITGIKTTSK--G-DLFTVSWDDHLKVVPAGGSGVDSSKAVA   95 (299)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEECSS-CSCSSCEEEEEECTT--S-CEEEEETTTEEEEECSSSSSSCTTSCCE
T ss_pred             CEEEEEcCCCeEEEEECCCC-----cEEEEEc-CCCCCcEEEEEeecc--c-eeecccceeeEEEeccCCcccccccccc
Confidence            46899999999999999876     4443443 234455666666543  3 3778888999999998654321111100


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           ..+...+.++.+.+         ++.+++++.++.+.+|+....             ........+.+++++|++
T Consensus        96 -----~~~~~~~~~~~~s~---------~g~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~~s~~~  148 (299)
T d1nr0a2          96 -----NKLSSQPLGLAVSA---------DGDIAVAACYKHIAIYSHGKL-------------TEVPISYNSSCVALSNDK  148 (299)
T ss_dssp             -----EECSSCEEEEEECT---------TSSCEEEEESSEEEEEETTEE-------------EEEECSSCEEEEEECTTS
T ss_pred             -----cccccccccccccc---------ccccccccccccccccccccc-------------cccccccccccccccccc
Confidence                 12334566666533         345666677788999984321             112234578899999999


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC--cee
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVM  252 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~  252 (326)
                      ++|++|+.|+.|++||+++++......        ..+...|++++|+|  ++++|++++.|+.|++||+.+...  ...
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~~~~~--------~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  218 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVSEVKT--------IVHPAEITSVAFSN--NGAFLVATDQSRKVIPYSVANNFELAHTN  218 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEE--------EECSSCEEEEEECT--TSSEEEEEETTSCEEEEEGGGTTEESCCC
T ss_pred             ccccccccccccccccccccccccccc--------cccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            999999999999999998776533211        11335689999998  566999999999999999886522  234


Q ss_pred             EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE--EEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       253 ~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      .+..|..+|++++|+|++++|++|+.||.|++||+++++..  .....|+...|..+.| +++++|+++|.||.+
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNI  292 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCE
T ss_pred             cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEE
Confidence            45678899999999999999999999999999999876543  2233443567777766 556799999999976

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.1e-30  Score=214.13  Aligned_cols=280  Identities=11%  Similarity=0.052  Sum_probs=194.2

Q ss_pred             eeeee-cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           16 RALTF-DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~-~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      +++.+ +....|+.|+....  ....+ ..+.. .+...+.++.|.+..++.+|++|+.||+|+|||+..++....+...
T Consensus        31 ~la~~~~~~~~i~~~~~~~~--~~~~~-~~~~g-h~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~  106 (325)
T d1pgua1          31 AIAYPCGKSAFVRCLDDGDS--KVPPV-VQFTG-HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN  106 (325)
T ss_dssp             EEEEEETTEEEEEECCSSCC--SSCSE-EEECT-TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCEEEEEEeCCCC--Cccce-EEEeC-CCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc
Confidence            44444 34445677765433  11112 23322 2234566777766667779999999999999999765543332211


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEec--CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~--~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                      .......+.++|.++.+.+        ++..+++++.  ++.+.+|+.+...        .+.... .+...|.+++|+|
T Consensus       107 ~~~~~~~~~~~v~~v~~s~--------~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~h~~~v~~~~~~~  169 (325)
T d1pgua1         107 VKSEFQVLAGPISDISWDF--------EGRRLCVVGEGRDNFGVFISWDSGN--------SLGEVS-GHSQRINACHLKQ  169 (325)
T ss_dssp             EEEEEECCSSCEEEEEECT--------TSSEEEEEECCSSCSEEEEETTTCC--------EEEECC-SCSSCEEEEEECS
T ss_pred             cccccccccCcEEEEEECC--------CCCccceeeccccceEEEEeecccc--------cceeee-ecccccccccccc
Confidence            1000124557888888754        4556666654  6678899876432        222222 3567899999999


Q ss_pred             CCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce
Q 020454          173 SEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (326)
Q Consensus       173 ~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~  251 (326)
                      ++. ++++++.|+.+++||+...+.......+..      +...|++++|+|. .+.+|++++.|+.|++||++++ +.+
T Consensus       170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~------~~~~v~~v~~~pd-~~~~l~s~~~d~~i~iwd~~~~-~~~  241 (325)
T d1pgua1         170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK------QGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSG-EFL  241 (325)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC------TTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTC-CEE
T ss_pred             cccceEEEeecccccccccccccccceecccccC------CCCccEEeeeccc-cceeccccccccceeeeeeccc-ccc
Confidence            886 477899999999999988777666544322      3367999999995 4568999999999999999987 668


Q ss_pred             eEEeecCCceEEEEec---CCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecce--EEEEEECC-CCCEEEEeccCccC
Q 020454          252 MSFDFRETPIKAVAEE---PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS--IRSIARHP-TLPIIASCGFLEAA  325 (326)
Q Consensus       252 ~~~~~~~~~i~~v~~s---~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~--v~~l~~~p-~~~~l~s~s~D~~~  325 (326)
                      ..+..|..++..+.|+   |++++|++++.|+.|+|||+++++++..+..| ...  +..+++.+ .+.+|+++|.||.+
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~dg~i  320 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD-KQQLGNQQVGVVATGNGRIISLSLDGTL  320 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC-TTCGGGCEEEEEEEETTEEEEEETTSCE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec-CCcccCeEEEEEECCCCEEEEEECCCEE
Confidence            8888887777655555   78999999999999999999999999888765 433  44444443 23489999999975

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-28  Score=207.48  Aligned_cols=275  Identities=17%  Similarity=0.107  Sum_probs=200.3

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      ...+....++...+|+......-...+...+   ++...+.+++|.  +++++|++|+ |++|+|||+.+++.+..+...
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~H~~~V~~l~fs--~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~  102 (388)
T d1erja_          29 PDALKKQTNDYYILYNPALPREIDVELHKSL---DHTSVVCCVKFS--NDGEYLATGC-NKTTQVYRVSDGSLVARLSDD  102 (388)
T ss_dssp             CTTSEEECSSCEEEECTTSCCCEEEEEEEEE---ECSSCCCEEEEC--TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-
T ss_pred             ccccccCCCCcEEEeCCCCCcceeeeeEeeC---CCCCcEEEEEEC--CCCCEEEEEe-CCeEEEEEecccceEeeeccc
Confidence            4567888889999999764411111122222   234445555554  4566899886 899999999988876665431


Q ss_pred             CC----------CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCc
Q 020454           95 GD----------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (326)
Q Consensus        95 ~~----------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (326)
                      ..          .....+...|.++++.+        ++..|++++.||.|++|+.....        .+..+ ..+...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--------~~~~l~s~~~dg~v~i~~~~~~~--------~~~~~-~~h~~~  165 (388)
T d1erja_         103 SAANKDPENLNTSSSPSSDLYIRSVCFSP--------DGKFLATGAEDRLIRIWDIENRK--------IVMIL-QGHEQD  165 (388)
T ss_dssp             ----------------CCCCBEEEEEECT--------TSSEEEEEETTSCEEEEETTTTE--------EEEEE-CCCSSC
T ss_pred             ccccccccccccccccCCCCCEEEEEECC--------CCCcceecccccccccccccccc--------ccccc-cccccc
Confidence            11          01124556788888755        56789999999999999976533        23333 345678


Q ss_pred             eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeC
Q 020454          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (326)
Q Consensus       165 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~  244 (326)
                      |.++.+++++..+++++.++.+++||.++.........+          .....+.+.|. ++++|++++.|+.|++||.
T Consensus       166 v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~  234 (388)
T d1erja_         166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE----------DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDS  234 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEECST-TCCEEEEEETTSCEEEEET
T ss_pred             ccccccccccccccccccceeeeeeeccccccccccccc----------cccccccccCC-CCCeEEEEcCCCeEEEeec
Confidence            999999999999999999999999999988776654432          23456677764 5679999999999999999


Q ss_pred             CCCCCceeEE-------eecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe------------EEEEEcceecceEE
Q 020454          245 SAQRRPVMSF-------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------------LLGCFIGKCSGSIR  305 (326)
Q Consensus       245 ~~~~~~~~~~-------~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~------------~~~~~~~~~~~~v~  305 (326)
                      ++. ..+..+       ..|...|++++|+|++++|++|+.||.|++||+++++            .......| ...|.
T Consensus       235 ~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~  312 (388)
T d1erja_         235 ETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVL  312 (388)
T ss_dssp             TTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEE
T ss_pred             ccC-ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc-cceEE
Confidence            876 334333       3567899999999999999999999999999998653            23344556 88999


Q ss_pred             EEEECCCCCEEEEeccCccC
Q 020454          306 SIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       306 ~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +++|+|++++|++|+.||.+
T Consensus       313 ~~~~s~~~~~l~sg~~dg~i  332 (388)
T d1erja_         313 SVATTQNDEYILSGSKDRGV  332 (388)
T ss_dssp             EEEECGGGCEEEEEETTSEE
T ss_pred             EEEECCCCCEEEEEeCCCEE
Confidence            99999999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.5e-29  Score=204.75  Aligned_cols=236  Identities=12%  Similarity=0.124  Sum_probs=174.1

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec-c
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS-N   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~-~   93 (326)
                      -.|++|+.||.|+|||+.++     +....+..+  ...+.+++|  .+.++++++|+.|+.+++|+........... .
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~~-----~~~~~~~~~--~~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  138 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYTT-----NKVHAIPLR--SSWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTT-----EEEEEEECS--CSCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred             CEEEEEECCCceeeeecccc-----eeEEEEecc--cccEEeeEe--eccceeeeeecccceeeccccccccccccccee
Confidence            56999999999999999877     555555433  334555555  4566799999999999999875433211110 0


Q ss_pred             cCCCC------------------------------------CCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEE
Q 020454           94 AGDSG------------------------------------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (326)
Q Consensus        94 ~~~~~------------------------------------~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i  137 (326)
                      +....                                    .......+.....        ......++++..|+.+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~v~i  210 (340)
T d1tbga_         139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL--------APDTRLFVSGACDASAKL  210 (340)
T ss_dssp             ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE--------CTTSSEEEEEETTTEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeEeeecc--------ccccceeEEeecCceEEE
Confidence            00000                                    0001111121111        124567888999999999


Q ss_pred             EEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                      ||+....        .+..+. .+...|.+++|+|++++|++|+.|+.|++||++..+.........       +...|+
T Consensus       211 ~d~~~~~--------~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~-------~~~~i~  274 (340)
T d1tbga_         211 WDVREGM--------CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-------IICGIT  274 (340)
T ss_dssp             EETTTTE--------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------CCSCEE
T ss_pred             EECCCCc--------EEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc-------ccCceE
Confidence            9976543        334443 356789999999999999999999999999999888766554322       234688


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                      +++|+|  ++++|++++.||.|++||+.++ +++..+..|..+|++++|+|++++|++|+.||.|++||
T Consensus       275 ~~~~s~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         275 SVSFSK--SGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECS--SSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECC--CCCEEEEEECCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999998  5669999999999999999987 67899999999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.6e-28  Score=200.54  Aligned_cols=236  Identities=12%  Similarity=0.166  Sum_probs=197.0

Q ss_pred             CCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE
Q 020454           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (326)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~  129 (326)
                      +...+.+++|.  +.+++|++|+.||+|+|||+.+++.+..+.        .|...|.++.+.+        +...++++
T Consensus        16 H~~~I~~l~~s--p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--------~h~~~V~~~~~~~--------~~~~~~~~   77 (317)
T d1vyhc1          16 HRSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLK--------GHTDSVQDISFDH--------SGKLLASC   77 (317)
T ss_dssp             CSSCEEEEEEC--SSSSEEEEEESSSCEEEEETTTCCCCEEEC--------CCSSCEEEEEECT--------TSSEEEEE
T ss_pred             CCCCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCCCEEEEEe--------CCCCcEEEEeeec--------cccccccc
Confidence            44556666664  456699999999999999999998877765        5567899888765        56789999


Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      ..++.+.+|+......         ......+...+.++.++++++.+++++.|+.+++||+++++.+..+..+.     
T Consensus        78 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----  143 (317)
T d1vyhc1          78 SADMTIKLWDFQGFEC---------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-----  143 (317)
T ss_dssp             ETTSCCCEEETTSSCE---------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-----
T ss_pred             cccccccccccccccc---------ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC-----
Confidence            9999999998654331         11112346678999999999999999999999999999998888776654     


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCC-------------------
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-------------------  270 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~-------------------  270 (326)
                          ..+.+++|+|  ++.+|++++.|+.|++|++++. .....+..+...+.+++|+|++                   
T Consensus       144 ----~~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (317)
T d1vyhc1         144 ----EWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP  216 (317)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred             ----Ccceeeeccc--CCCEEEEEeCCCeEEEEeeccc-eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccC
Confidence                4577889987  5669999999999999999977 6678888888899999988753                   


Q ss_pred             -CeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          271 -FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       271 -~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                       .++++|+.||.|++||+++++++..+.+| ...|.+++|+|++++|++++.||.+
T Consensus       217 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i  271 (317)
T d1vyhc1         217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTL  271 (317)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             CceeEeccCCCEEEEEECCCCcEEEEEeCC-CCCEEEEEECCCCCEEEEEECCCeE
Confidence             46889999999999999999999999998 9999999999999999999999975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-28  Score=197.96  Aligned_cols=263  Identities=14%  Similarity=0.209  Sum_probs=194.8

Q ss_pred             cCCCCCCCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccc
Q 020454            7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (326)
Q Consensus         7 ~~~~~~~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~   86 (326)
                      +.|.....-+|++|+.||.|+|||+.++     +....+..  +...+.++++    ++++|++|+.||.|++|++..+.
T Consensus        18 V~c~~~d~~~l~sgs~Dg~i~vWd~~~~-----~~~~~l~~--H~~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          18 VYCLQYDDQKIVSGLRDNTIKIWDKNTL-----ECKRILTG--HTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSSC-----CEEEEECC--CSSCEEEEEC----CSSEEEEEETTSCEEEEESSSCC
T ss_pred             EEEEEEcCCEEEEEeCCCeEEEEECCCC-----cEEEEEec--CCCCEeeeec----ccceeeccccccccccccccccc
Confidence            3444344578999999999999999877     55556653  3444556665    34589999999999999998877


Q ss_pred             eeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceE
Q 020454           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (326)
                      .......        .........  .        ....++++..++.+.+|+.......      ....-...+...+.
T Consensus        87 ~~~~~~~--------~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~  142 (293)
T d1p22a2          87 MLNTLIH--------HCEAVLHLR--F--------NNGMMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVN  142 (293)
T ss_dssp             EEEEECC--------CCSCEEEEE--C--------CTTEEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEE
T ss_pred             ccccccc--------ccccccccc--c--------cccceeecccccceeEeeccccccc------cccccccccccccc
Confidence            6555443        112222222  2        4568999999999999997654311      11111223455677


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      .+.+.  ...+++++.|+.|++||+++++.+..+..+.         ..+..+.+.    +..+++++.|+.|++||+++
T Consensus       143 ~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         143 VVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQYR----DRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEEE----TTEEEEEETTSCEEEEETTT
T ss_pred             cceec--ccccccccCCCceeeecCCCCcEEEEEcccc---------cccccccCC----CCeEEEecCCCEEEEEeccc
Confidence            66665  4677889999999999999999888776644         335555554    33899999999999999998


Q ss_pred             CCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC---------CeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       247 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~---------~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                      . ..+..+..+...+..  +++++.+|++|+.||.|++||+.+         ..++..+.+| .+.|++++|+  +.+|+
T Consensus       208 ~-~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H-~~~V~~v~~d--~~~l~  281 (293)
T d1p22a2         208 G-ACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQFD--EFQIV  281 (293)
T ss_dssp             C-CEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEEC--SSCEE
T ss_pred             c-eeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC-CCCEEEEEEc--CCEEE
Confidence            7 667788778777765  456788999999999999999753         3567888998 9999999995  56899


Q ss_pred             EeccCccC
Q 020454          318 SCGFLEAA  325 (326)
Q Consensus       318 s~s~D~~~  325 (326)
                      |||.||.+
T Consensus       282 s~s~Dg~i  289 (293)
T d1p22a2         282 SSSHDDTI  289 (293)
T ss_dssp             ECCSSSEE
T ss_pred             EEecCCEE
Confidence            99999976

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.1e-28  Score=201.16  Aligned_cols=236  Identities=12%  Similarity=0.082  Sum_probs=178.3

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+...+.++++.  +++++|++|+.||+|++||+++++.+..+..       .|...|.++.+.+         ++.+++
T Consensus        10 GH~~~V~~l~~s--~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~h~~~v~~v~~~~---------~g~~~~   71 (299)
T d1nr0a2          10 GHNKAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRVFPD-------VHATMITGIKTTS---------KGDLFT   71 (299)
T ss_dssp             CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEECSSC-------SCSSCEEEEEECT---------TSCEEE
T ss_pred             CCCCCcEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-------CCCCcEEEEEeec---------cceeec
Confidence            344556666664  4567999999999999999998887666543       5667899888644         456889


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      ++.|+.+++|+.........      ..........+.++.+++++++++++ .++.+.+|+........  ..      
T Consensus        72 ~~~d~~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~~~~~--~~------  136 (299)
T d1nr0a2          72 VSWDDHLKVVPAGGSGVDSS------KAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKLTEVP--IS------  136 (299)
T ss_dssp             EETTTEEEEECSSSSSSCTT------SCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEEEEEE--CS------
T ss_pred             ccceeeEEEeccCCcccccc------cccccccccccccccccccccccccc-ccccccccccccccccc--cc------
Confidence            99999999999765331110      01111235678899999999887765 45689999965322221  11      


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                           ..+++++|+|  +++++++++.|+.|++||+++..........|...|++++|+|++++|++++.|+.|++||+.
T Consensus       137 -----~~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  209 (299)
T d1nr0a2         137 -----YNSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA  209 (299)
T ss_dssp             -----SCEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred             -----cccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 2367888987  566999999999999999986522222344678899999999999999999999999999998


Q ss_pred             CCeEEE---EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          289 TGKLLG---CFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       289 ~~~~~~---~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++..+.   .+.+| ..+|++++|+|++++|++|+.||.+
T Consensus       210 ~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         210 NNFELAHTNSWTFH-TAKVACVSWSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             GTTEESCCCCCCCC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccc-ccccccccccccccceEEEcCCCEE
Confidence            876543   45567 8999999999999999999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.7e-28  Score=198.83  Aligned_cols=246  Identities=12%  Similarity=0.103  Sum_probs=177.9

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~   96 (326)
                      |++|+.||.|++||+.++     .       ..+...+..+.+..   +..+++++.|++|++|+....++.        
T Consensus        24 l~sgs~Dg~v~~Wd~~~~-----~-------~~h~~~V~~~~~~~---~~~~~s~s~D~~v~~w~~~~~~~~--------   80 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSM-----H-------QDHSNLIVSLDNSK---AQEYSSISWDDTLKVNGITKHEFG--------   80 (287)
T ss_dssp             TEEEETTSCEEETTTTEE-----E-------CCCCSCEEEEECCS---TTCCEEEETTTEEEETTEEEEECS--------
T ss_pred             EEEEeCCCeEEEEECCCC-----C-------CCCCCCEEEEEecC---CCeEEEEeeccccccccccccccc--------
Confidence            899999999999998754     1       12333455555532   335899999999999998543321        


Q ss_pred             CCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE
Q 020454           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (326)
Q Consensus        97 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (326)
                             ..+..+...         .++.++....++.+.+|+.....        .++....  ...+  ..+++++..
T Consensus        81 -------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~--~~~~~~~~~  132 (287)
T d1pgua2          81 -------SQPKVASAN---------NDGFTAVLTNDDDLLILQSFTGD--------IIKSVRL--NSPG--SAVSLSQNY  132 (287)
T ss_dssp             -------SCEEEEEEC---------SSSEEEEEETTSEEEEEETTTCC--------EEEEEEC--SSCE--EEEEECSSE
T ss_pred             -------cceeeeeec---------cCCceEEEeecccceeeecccee--------eeeeccc--ccee--eeeeccCcc
Confidence                   223334432         34566667777788888865433        3444443  2233  345666777


Q ss_pred             EEEecCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe
Q 020454          177 SLFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (326)
Q Consensus       177 l~sg~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  255 (326)
                      +++++.+ +.+++|++...+........        +...+++++|+|  ++.+|++++.||.|++||+.+.......+.
T Consensus       133 ~~v~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~v~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         133 VAVGLEEGNTIQVFKLSDLEVSFDLKTP--------LRAKPSYISISP--SETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEETTTSCEEEEETTEEEEEEECSSC--------CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeccccceeeeeeccccceeeeeeec--------cCCceeEEEecc--Cccccccccccccccceeeccccccccccc
Confidence            7777766 47999999876665554332        224589999998  566999999999999999997633334466


Q ss_pred             ecCCceEEEEecCC----------CCeEEEEcCCCcEEEEECCC-CeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          256 FRETPIKAVAEEPD----------SFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       256 ~~~~~i~~v~~s~~----------~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .|..+|.+++|+|.          +.+|++|+.|+.|++||+++ .+.+..+.+| .+.|++++|+|++ .|+|+|.|+.
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETT-EEEEEETTSC
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECCCC-EEEEEECCCe
Confidence            78899999999874          46899999999999999977 5566667788 9999999999986 6889999997


Q ss_pred             C
Q 020454          325 A  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       281 v  281 (287)
T d1pgua2         281 I  281 (287)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.3e-27  Score=193.90  Aligned_cols=275  Identities=12%  Similarity=0.049  Sum_probs=184.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -.|++|+.||.|||||+..+ .....+...++   +...+.+++|.+. .+.+|++|+.||.|++|+...+........ 
T Consensus        24 ~~L~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~---h~~~V~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~-   97 (342)
T d1yfqa_          24 SLLLITSWDGSLTVYKFDIQ-AKNVDLLQSLR---YKHPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPSFQALTN-   97 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETT-TTEEEEEEEEE---CSSCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSSEEECBS-
T ss_pred             CEEEEEECCCeEEEEEccCC-CcceEEEEecC---CCCCEEEEEEeCC-CCCEEEEcccccceeeeecccccccccccc-
Confidence            46899999999999999865 22222322222   3345666666543 234799999999999999987766554443 


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc---CCCceEEEEEc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---ASGTIAFSKVD  171 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~  171 (326)
                            .+...........        ....+++++.++.+++||++.....      ........   .......+.+.
T Consensus        98 ------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          98 ------NEANLGICRICKY--------GDDKLIAASWDGLIEVIDPRNYGDG------VIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             ------CCCCSCEEEEEEE--------TTTEEEEEETTSEEEEECHHHHTTB------CEEEEESCSSSSSSCCCEEEEE
T ss_pred             ------ccccccccccccc--------ccccccccccccccceeeccccccc------eeeecccccccccceeeeeeee
Confidence                  1112222222222        4678999999999999998754321      11111111   12234455667


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCc-
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-  250 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~-  250 (326)
                      +.++.+++++.|+.|++||+...+..........      ....+....+.+. ++..+++++.||.+.+|+....... 
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~s~dg~~~v~~~~~~~~~~  230 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG------LKYQIRDVALLPK-EQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS------CSSCEEEEEECSG-GGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeecc------cccceeeeEeecC-CCCEEEeecCCCeEEEEEecCCccee
Confidence            7788999999999999999987654332211111      1123445566554 4558999999999999997643211 


Q ss_pred             ----eeE---------EeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEE
Q 020454          251 ----VMS---------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       251 ----~~~---------~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  317 (326)
                          ...         ...|...+++++|+|++++|++|+.||.|++||+++++.+..+..+  ..+..++|+|++++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~--~~~~~~~~s~~~~~l~  308 (342)
T d1yfqa_         231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF--NEDSVVKIACSDNILC  308 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--SSSEEEEEEECSSEEE
T ss_pred             eccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC--CCCEEEEEEeCCCEEE
Confidence                111         1245567899999999999999999999999999999999888743  2444567777888999


Q ss_pred             EeccCcc
Q 020454          318 SCGFLEA  324 (326)
Q Consensus       318 s~s~D~~  324 (326)
                      +++.|+.
T Consensus       309 ~a~sdd~  315 (342)
T d1yfqa_         309 LATSDDT  315 (342)
T ss_dssp             EEEECTH
T ss_pred             EEEcCCc
Confidence            9888764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.7e-27  Score=200.40  Aligned_cols=265  Identities=12%  Similarity=0.095  Sum_probs=167.7

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+...+.++++.    +++|++++.|++|+|||..+.+...........  ..+...+..+.....- .........+++
T Consensus        12 ~H~~~I~~v~~~----~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~s   84 (393)
T d1sq9a_          12 AHDADIFSVSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH--FVHKSGLHHVDVLQAI-ERDAFELCLVAT   84 (393)
T ss_dssp             CSSSCEEEEEEC----SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEE--ECCTTCEEEEEEEEEE-ETTTEEEEEEEE
T ss_pred             cccCccEEEEEe----CCEEEEEECCCeEEEEECCCCCCCcccceeEee--eeccCCceEeeeEeee-ccCCCCCcEEEE
Confidence            455566666652    358999999999999997654421111100000  0111111111111000 000012235678


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEE-ccCCCceEEEEEcCC-----CCEEEEecCCCeEEEEECCCceeeee-ec
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDIS-----EKFSLFGGKGVEVNVWDLDKCEKIWT-AK  201 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-----~~~l~sg~~d~~i~iwd~~~~~~~~~-~~  201 (326)
                      ++.||.+++|++.................. ......+..+++.++     +.++++++.|+.+++||+........ ..
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            899999999998754421111100000000 011234666777664     46889999999999999853211000 00


Q ss_pred             CCC--------CCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE------eecCCceEEEEec
Q 020454          202 PPP--------KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF------DFRETPIKAVAEE  267 (326)
Q Consensus       202 ~~~--------~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~~i~~v~~s  267 (326)
                      ...        ...........+++++|+|  ++ +|++|+.|++|++||++++ +++..+      ..|..+|++++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEcccc
Confidence            000        0000112335688999987  44 8999999999999999976 444443      3578899999999


Q ss_pred             CCCCeEEEEcCCCc---EEEEECCCCeEEEEEc-------------ceecceEEEEEECCCCCEEEEeccCccC
Q 020454          268 PDSFNIYIGNGSGD---LASVDIRTGKLLGCFI-------------GKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       268 ~~~~~l~~g~~dg~---v~iwd~~~~~~~~~~~-------------~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |+|++|++|+.|++   |++||+++++.+..+.             +| .+.|++|+|+|++++|+|||.|+.+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEECCCCEE
Confidence            99999999999874   9999999998887764             67 9999999999999999999999975

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-26  Score=188.06  Aligned_cols=225  Identities=13%  Similarity=0.214  Sum_probs=174.2

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +++|++|+.||+|+|||+.+++.+..+.        .|.+.|.++.+          .++.+++++.|+.+++|+.....
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------~h~~~V~~v~~----------~~~~l~s~s~D~~~~~~~~~~~~   88 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQM----------RDNIIISGSTDRTLKVWNAETGE   88 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEE----------ETTEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEe--------CCCCCEEEEEe----------CCCccccceeccccccccccccc
Confidence            4589999999999999999998877665        56688998886          33589999999999999977533


Q ss_pred             c---------------------ccccccceEEEEEccCCCceEE--------EEEcCCCCEEEEecCCCeEEEEECCCce
Q 020454          145 V---------------------SAESSCSTVKSWNVCASGTIAF--------SKVDISEKFSLFGGKGVEVNVWDLDKCE  195 (326)
Q Consensus       145 ~---------------------~~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~~l~sg~~d~~i~iwd~~~~~  195 (326)
                      .                     ..+..++.+.+|+.........        ....+...++++++.|+.|++||.+..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  168 (342)
T d2ovrb2          89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET  168 (342)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred             ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccce
Confidence            2                     1233456677777655443222        2233356778899999999999999988


Q ss_pred             eeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE
Q 020454          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (326)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~  275 (326)
                      .+..+..+...         +.  .+.+  ++.++++++.||.|++||++.. +++..+..|...+.+++++  +++|++
T Consensus       169 ~~~~~~~~~~~---------~~--~~~~--~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s  232 (342)
T d2ovrb2         169 CLHTLQGHTNR---------VY--SLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVS  232 (342)
T ss_dssp             EEEEECCCSSC---------EE--EEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEE
T ss_pred             eeEEEcCcccc---------cc--cccC--CCCEEEEEeCCCeEEEeecccc-eeeeEecccccceeEEecC--CCEEEE
Confidence            88887765422         22  3333  4559999999999999999977 6788888898999888775  569999


Q ss_pred             EcCCCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCCCEEEEeccCccC
Q 020454          276 GNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       276 g~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      |+.||.|++||+...+....+..+  +...+.++.++  +.++++||.||.+
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i  282 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV  282 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEE
Confidence            999999999999999888877653  15567777775  4699999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.3e-26  Score=188.02  Aligned_cols=240  Identities=10%  Similarity=0.055  Sum_probs=173.8

Q ss_pred             CCCCCeEEEEecCC-cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454           62 SQNDPLLAVARKNG-LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (326)
Q Consensus        62 ~~~~~~l~~g~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~  140 (326)
                      ++.++.|++++.+. .|+.|+....+........     ..+...|.++.+.+..      ++..+++++.||.|++|++
T Consensus        26 ~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-----gh~~~~v~~v~fsP~~------~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          26 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----GHGSSVVTTVKFSPIK------GSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             ETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----TTTTSCEEEEEECSST------TCCEEEEEETTSEEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-----CCCCCCEEEEEEeeCC------CCCEEEEEeCCCCEEEeee
Confidence            34556788776554 4666766444332222211     0234678888865421      3457889999999999998


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEec--CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceee
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (326)
                      ................+. .+..+|.+++|+++++++++++  .++.+++|+..+++.+..+..|.         ..|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~  164 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS---------QRINA  164 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS---------SCEEE
T ss_pred             cCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc---------ccccc
Confidence            765432221112222233 3467899999999999887765  46789999999988888776654         56889


Q ss_pred             eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEE---eecCCceEEEEecCC-CCeEEEEcCCCcEEEEECCCCeEEE
Q 020454          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF---DFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLG  294 (326)
Q Consensus       219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~~i~~v~~s~~-~~~l~~g~~dg~v~iwd~~~~~~~~  294 (326)
                      ++|+|.. ..++++++.|+.+++||.+.. +....+   ..+...|++++|+|+ +.+|++|+.||.|++||+++++.+.
T Consensus       165 ~~~~~~~-~~~~~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~  242 (325)
T d1pgua1         165 CHLKQSR-PMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK  242 (325)
T ss_dssp             EEECSSS-SCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred             ccccccc-cceEEEeeccccccccccccc-ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence            9999853 346888999999999998865 323333   346678999999997 6889999999999999999999999


Q ss_pred             EEcceecceEEEEEEC---CCCCEEEEeccCccC
Q 020454          295 CFIGKCSGSIRSIARH---PTLPIIASCGFLEAA  325 (326)
Q Consensus       295 ~~~~~~~~~v~~l~~~---p~~~~l~s~s~D~~~  325 (326)
                      .+.+| ..++.++.|+   |++++|+++|.|+.+
T Consensus       243 ~l~~~-~~~v~~~~~s~~~~dg~~l~s~s~D~~i  275 (325)
T d1pgua1         243 YIEDD-QEPVQGGIFALSWLDSQKFATVGADATI  275 (325)
T ss_dssp             ECCBT-TBCCCSCEEEEEESSSSEEEEEETTSEE
T ss_pred             ccccc-ccccccceeeeeccCCCEEEEEeCCCeE
Confidence            99987 7777666555   788999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-25  Score=186.03  Aligned_cols=228  Identities=11%  Similarity=0.131  Sum_probs=171.9

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +++|++|+.||+|+|||+.+++.+..+.        .|.++|.++.+.         +++.+++++.||.+++|++....
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~~~~~~~~l~--------~H~~~V~~l~~s---------~~~~l~s~s~D~~i~iw~~~~~~   85 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYA---------HGGILVSGSTDRTVRVWDIKKGC   85 (355)
T ss_dssp             TTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEEE---------TTTEEEEEETTCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEE--------CCCCCEEEEEEc---------CCCEEEEEecccccccccccccc
Confidence            4589999999999999999998887776        567899999863         35689999999999999977543


Q ss_pred             cccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCc-------------
Q 020454          145 VSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI-------------  210 (326)
Q Consensus       145 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------  210 (326)
                      .        ..... ...........+++++.++++++.|+.|++||+++.................             
T Consensus        86 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          86 C--------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             E--------EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             c--------ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            2        22211 1222345566778888999999999999999998765433222111100000             


Q ss_pred             -CCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 020454          211 -FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (326)
Q Consensus       211 -~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~  289 (326)
                       .+...+.  .+.+  ++++++++..|+.|++||+++. +.+.....+...+.++.|+|++.++++++.|+.|++||+++
T Consensus       158 ~~~~~~v~--~~~~--~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         158 RGHMASVR--TVSG--HGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             ECCSSCEE--EEEE--ETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eecccccc--cccc--ccceeeeecccceeeeeecccc-cceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence             0011111  2233  4559999999999999999977 56777778888999999999999999999999999999999


Q ss_pred             CeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       290 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++.+..+.+| ...|.+++|++  ++|++++.||.+
T Consensus       233 ~~~~~~~~~h-~~~v~~~~~~~--~~l~~~~~dg~i  265 (355)
T d1nexb2         233 GELMYTLQGH-TALVGLLRLSD--KFLVSAAADGSI  265 (355)
T ss_dssp             CCEEEEECCC-SSCCCEEEECS--SEEEEECTTSEE
T ss_pred             cccccccccc-ccccccccccc--ceeeeeeccccc
Confidence            9999999998 99999999965  689999999975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-23  Score=168.19  Aligned_cols=228  Identities=13%  Similarity=0.176  Sum_probs=171.0

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      ++...+.++++    ++++|++|+.||+|+|||+.+++.+..+.        .|.++|.++.+          +++.|++
T Consensus        13 ~~~~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~--------~H~~~V~~v~~----------~~~~l~s   70 (293)
T d1p22a2          13 ETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY----------DERVIIT   70 (293)
T ss_dssp             SSCCCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEEC----------CSSEEEE
T ss_pred             CCCCCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEEEe--------cCCCCEeeeec----------ccceeec
Confidence            34455555554    35689999999999999999998887775        56788998886          4578999


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      ++.||.+++|++.....        .....   ..........+....++++..++.+.+||..............    
T Consensus        71 ~s~D~~i~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  135 (293)
T d1p22a2          71 GSSDSTVRVWDVNTGEM--------LNTLI---HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV----  135 (293)
T ss_dssp             EETTSCEEEEESSSCCE--------EEEEC---CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC----
T ss_pred             ccccccccccccccccc--------ccccc---ccccccccccccccceeecccccceeEeecccccccccccccc----
Confidence            99999999999875432        11111   1122233344566788899999999999998765432221111    


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECC
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~  288 (326)
                        .+...+....+.+    ..+++++.|+.|++||+++. +++..+..+...+..+.++  +.++++++.||.|++||++
T Consensus       136 --~~~~~v~~~~~~~----~~~~~~s~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~  206 (293)
T d1p22a2         136 --GHRAAVNVVDFDD----KYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE  206 (293)
T ss_dssp             --CCSSCEEEEEEET----TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             --ccccccccceecc----cccccccCCCceeeecCCCC-cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecc
Confidence              0123455555543    37889999999999999987 6788888888888887774  6789999999999999999


Q ss_pred             CCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +.+.+..+.+| ...|..+  .+++.+|++++.||.+
T Consensus       207 ~~~~~~~~~~~-~~~v~~~--~~~~~~l~sg~~dg~i  240 (293)
T d1p22a2         207 CGACLRVLEGH-EELVRCI--RFDNKRIVSGAYDGKI  240 (293)
T ss_dssp             TCCEEEEECCC-SSCEEEE--ECCSSEEEEEETTSCE
T ss_pred             cceeeeeeccc-ceeeeec--cccceEEEEEcCCCEE
Confidence            99999999987 8777764  4577899999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4e-24  Score=172.77  Aligned_cols=221  Identities=11%  Similarity=0.090  Sum_probs=159.8

Q ss_pred             CCeeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeec
Q 020454           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        13 ~~~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      +...+++++.|+.+++|++...     +.    .   ..  ...+++  ..+ ..+++...++.+.+|+..+++.+..+.
T Consensus        56 ~~~~~~s~s~D~~v~~w~~~~~-----~~----~---~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (287)
T d1pgua2          56 KAQEYSSISWDDTLKVNGITKH-----EF----G---SQ--PKVASA--NND-GFTAVLTNDDDLLILQSFTGDIIKSVR  118 (287)
T ss_dssp             STTCCEEEETTTEEEETTEEEE-----EC----S---SC--EEEEEE--CSS-SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEeecccccccccccc-----cc----c---cc--eeeeee--ccC-CceEEEeecccceeeeccceeeeeecc
Confidence            4467899999999999998754     11    1   11  111222  222 245666677889999998888776665


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC-CcEEEEEccccccccccccceEEEEEccCCCceEEEEEc
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~-g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  171 (326)
                      ..         .+...+..          .+..+++++.+ +.+++|++....        ........+...+.+++|+
T Consensus       119 ~~---------~~~~~~~~----------~~~~~~v~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s  171 (287)
T d1pgua2         119 LN---------SPGSAVSL----------SQNYVAVGLEEGNTIQVFKLSDLE--------VSFDLKTPLRAKPSYISIS  171 (287)
T ss_dssp             CS---------SCEEEEEE----------CSSEEEEEETTTSCEEEEETTEEE--------EEEECSSCCSSCEEEEEEC
T ss_pred             cc---------ceeeeeec----------cCcceeeeccccceeeeeeccccc--------eeeeeeeccCCceeEEEec
Confidence            31         23443442          34566666666 478999976432        2222223345689999999


Q ss_pred             CCCCEEEEecCCCeEEEEECCCceeeee-ecCCCCCCCCcCCCCceeeeEEeec--------CCCcEEEEEeCCCeEEEE
Q 020454          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSI--------DDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       172 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~--------~~~~~l~~~~~dg~v~iw  242 (326)
                      |++++|++|+.|+.|++||+.+++.... ...         |...|++++|+|.        .++.+|++++.|++|++|
T Consensus       172 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---------h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw  242 (287)
T d1pgua2         172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAF---------RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY  242 (287)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEECCSCC---------CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred             cCccccccccccccccceeecccccccccccc---------cccccceeeecccccccccccCCCCeeEeecCCCeEEEE
Confidence            9999999999999999999998876543 222         2356889999874        245689999999999999


Q ss_pred             eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                      |++...+.+..+..|...|++++|+|++ .|++++.||.|++||+
T Consensus       243 ~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         243 SVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9987556677777899999999999986 6888999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.2e-23  Score=169.11  Aligned_cols=249  Identities=10%  Similarity=0.011  Sum_probs=164.9

Q ss_pred             CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEE
Q 020454           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (326)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~  128 (326)
                      .+...|.++.|.++  +++|++|+.||+|+|||+..+.....+...     ..|.++|.++++.+.       .+..+++
T Consensus         9 ~h~d~I~~l~fsp~--~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-----~~h~~~V~~v~f~~~-------~~~~l~s   74 (342)
T d1yfqa_           9 APKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFIDN-------TDLQIYV   74 (342)
T ss_dssp             CCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEES-------SSEEEEE
T ss_pred             CCCCCEEEEEEeCC--CCEEEEEECCCeEEEEEccCCCcceEEEEe-----cCCCCCEEEEEEeCC-------CCCEEEE
Confidence            45556677777654  558999999999999999765543333221     145688999997652       2357899


Q ss_pred             EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCC
Q 020454          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (326)
Q Consensus       129 ~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~  208 (326)
                      ++.||.+++|++....        .................+.++...+++++.++.+++||++............... 
T Consensus        75 g~~d~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~-  145 (342)
T d1yfqa_          75 GTVQGEILKVDLIGSP--------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-  145 (342)
T ss_dssp             EETTSCEEEECSSSSS--------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-
T ss_pred             cccccceeeeeccccc--------ccccccccccccccccccccccccccccccccccceeeccccccceeeecccccc-
Confidence            9999999999987543        2222222233344555566678899999999999999987654322221111000 


Q ss_pred             CcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCce--eEEeecCCceEEEEecC-CCCeEEEEcCCCcEEEE
Q 020454          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASV  285 (326)
Q Consensus       209 ~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~i~~v~~s~-~~~~l~~g~~dg~v~iw  285 (326)
                        ..........+.+  .+..+++++.|+.|++||++......  .........+.+..+.+ ++..+++++.||.+.+|
T Consensus       146 --~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         146 --NTKVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             --SSSSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             --cccceeeeeeeec--cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence              0011223344554  44589999999999999998653321  22223344555555544 57889999999999999


Q ss_pred             ECCCCeE---------EE------EEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          286 DIRTGKL---------LG------CFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       286 d~~~~~~---------~~------~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++.....         ..      ...+| ...|++|+|+|++++|||||.||.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~Dg~v  275 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSS-CCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcc-cccceeEEecCCccEEEEECCCCEE
Confidence            9865321         11      11234 6689999999999999999999975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.5e-20  Score=160.24  Aligned_cols=274  Identities=12%  Similarity=0.023  Sum_probs=177.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      +.+|+..++|.|+|||+.++     ++..++..+.   ....+.|  ++++++|++++.||+|++||+.+++........
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~-----~~~~~l~~g~---~~~~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGY---AVHISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----SEEEEEECCS---SEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC-----cEEEEEeCCC---CeeEEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            56789999999999999988     6665665432   2334444  456779999999999999999888754332210


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccccc------------------------cccc
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV------------------------SAES  149 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~------------------------~~~~  149 (326)
                      ..   ..+.+.+.+..+.+        ++.++ +++..++.+.+||......                        ...+
T Consensus       103 ~~---~~~~~~~~s~~~sp--------DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s  171 (426)
T d1hzua2         103 IG---IEARSVESSKFKGY--------EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  171 (426)
T ss_dssp             CC---SEEEEEEECCSTTC--------TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CC---CCCcceEEeeeecC--------CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEEC
Confidence            00   01112233333332        45555 5556889999998765322                        0011


Q ss_pred             ccceEEE-----------EE-----------ccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecCCCCC
Q 020454          150 SCSTVKS-----------WN-----------VCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKN  206 (326)
Q Consensus       150 ~~~~~~~-----------~~-----------~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~  206 (326)
                      .++....           +.           ......+..+.++|++++++++. .+..+.+++..+++.+.........
T Consensus       172 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (426)
T d1hzua2         172 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  251 (426)
T ss_dssp             SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC
T ss_pred             CCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc
Confidence            1111111           11           11223467899999998776655 5667999999998877665432211


Q ss_pred             CCCcCCCCceeeeEEeecCCCcE-EEEEeCCCeEEEEeCCCCC------CceeEEeecCCceEEEEecCCCCeEEE----
Q 020454          207 SLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDSFNIYI----  275 (326)
Q Consensus       207 ~~~~~~~~~v~~~~~~p~~~~~~-l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~i~~v~~s~~~~~l~~----  275 (326)
                             .+.....+.+...+.. .+..+.|+.+.+|+.....      +....+..|...+..++|+|++++|++    
T Consensus       252 -------~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         252 -------HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             -------CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTT
T ss_pred             -------cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecC
Confidence                   1122334444322222 2334568899998865431      345678889899999999999999995    


Q ss_pred             ---EcCCCcEEEEECCCCeEEEEEc---------ceecceEEEEEECCCCCEEE
Q 020454          276 ---GNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       276 ---g~~dg~v~iwd~~~~~~~~~~~---------~~~~~~v~~l~~~p~~~~l~  317 (326)
                         +..+++|++||+++++...++.         .| ...|.+++|+|||++|+
T Consensus       325 ~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~-~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         325 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCCEEEEEECSSSSEEE
T ss_pred             CCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC-CccEEEEEECCCCCEEE
Confidence               5567899999999988766552         23 55699999999998663

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=7.9e-21  Score=157.74  Aligned_cols=257  Identities=10%  Similarity=0.028  Sum_probs=175.5

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCC--cEEEEeccccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG--LTDILNPLNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg--~i~i~~~~~~~~~~~~~   92 (326)
                      -++++....|.|.||++.++     .+. +..   +...+..+.|  ++++++|++++.+.  .|++||.++++... +.
T Consensus        15 G~~~a~~~~g~v~v~d~~~~-----~~~-~~~---~~~~v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~   82 (360)
T d1k32a3          15 GDLIAFVSRGQAFIQDVSGT-----YVL-KVP---EPLRIRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FE   82 (360)
T ss_dssp             GGCEEEEETTEEEEECTTSS-----BEE-ECS---CCSCEEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCEEE-CC
T ss_pred             CCEEEEEECCeEEEEECCCC-----cEE-Ecc---CCCCEEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEE-ee
Confidence            45566667899999999876     333 233   2334445544  56667888776653  79999998777543 22


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                              .+...+.++.+.+        ++..+++++.++.+.+|++....        ..+... .+...+.+++|+|
T Consensus        83 --------~~~~~v~~~~~sp--------dg~~l~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~sp  137 (360)
T d1k32a3          83 --------ENLGNVFAMGVDR--------NGKFAVVANDRFEIMTVDLETGK--------PTVIER-SREAMITDFTISD  137 (360)
T ss_dssp             --------CCCCSEEEEEECT--------TSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CSSSCCCCEEECT
T ss_pred             --------CCCceEEeeeecc--------cccccceeccccccccccccccc--------eeeeee-cccccccchhhcc
Confidence                    4557888888766        67799999999999999976543        233333 3456788999999


Q ss_pred             CCCEEEEe----------cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          173 SEKFSLFG----------GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       173 ~~~~l~sg----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      ++++|+.+          ..++.+++||+.+++.......          ...+..+.|+|  +++.|++++.++.+++|
T Consensus       138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~----------~~~~~~~~~sp--dg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE----------NSHDYAPAFDA--DSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS----------SSBEEEEEECT--TSCEEEEEESCCCCCEE
T ss_pred             ceeeeeeeccccccceeeccccceeeeccccCceeeeccc----------ccccccccccC--CCCEEEEEeCCCceEcc
Confidence            99999853          4556799999998766543221          23467788988  67799999999999999


Q ss_pred             eCCCCCC------ceeEEe----------------------------------------------ecCCceEEEEecCC-
Q 020454          243 DTSAQRR------PVMSFD----------------------------------------------FRETPIKAVAEEPD-  269 (326)
Q Consensus       243 d~~~~~~------~~~~~~----------------------------------------------~~~~~i~~v~~s~~-  269 (326)
                      |......      ....+.                                              .+...+..+.+.+. 
T Consensus       206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (360)
T d1k32a3         206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG  285 (360)
T ss_dssp             CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred             cccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecC
Confidence            8643210      000010                                              11111222222222 


Q ss_pred             --CCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          270 --SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       270 --~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                        +.++++++.++.+++||+.+++..    .| .+.|.+++|+||+++|++++.||.+
T Consensus       286 ~~~~~~~~~~~~~~i~~~d~~~~~~~----~~-~~~v~~~~~SpDG~~l~~~~~Dg~i  338 (360)
T d1k32a3         286 EFAAYYQGAPEKGVLLKYDVKTRKVT----EV-KNNLTDLRLSADRKTVMVRKDDGKI  338 (360)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCCEE----EE-EEEEEEEEECTTSCEEEEEETTSCE
T ss_pred             CCeeEEEecCCCCEEEEEECCCCeEE----Ee-cCCcCEEEECCCCCEEEEEECCCeE
Confidence              224556677889999999987653    33 5679999999999999999999975

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.5e-18  Score=140.26  Aligned_cols=258  Identities=12%  Similarity=0.079  Sum_probs=181.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeecc
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN   93 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~   93 (326)
                      +-.|+...+|.|+|||+.++     ++..++.....+   ..+.  .++++++| +++..++.|++||+.+++.+..+..
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~-----~~~~~i~~g~~p---~~va--~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~   72 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSN-----KVTATIPVGSNP---MGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA   72 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTT-----EEEEEEECSSSE---EEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCEEEEEECCCC-----eEEEEEECCCCc---eEEE--EeCCCCEEEEEECCCCEEEEEECCCCceeeeeec
Confidence            34578889999999999988     666666543332   2233  34566666 5667889999999999988777653


Q ss_pred             cCCCCCCCCCCCeeeeecccccccccCCCCc-eEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC
Q 020454           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (326)
                              + ..+.++.+..        ++. .++++..++.+.+|+.....        .+...  .......++.++|
T Consensus        73 --------~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~  125 (301)
T d1l0qa2          73 --------G-SSPQGVAVSP--------DGKQVYVTNMASSTLSVIDTTSNT--------VAGTV--KTGKSPLGLALSP  125 (301)
T ss_dssp             --------S-SSEEEEEECT--------TSSEEEEEETTTTEEEEEETTTTE--------EEEEE--ECSSSEEEEEECT
T ss_pred             --------c-cccccccccc--------ccccccccccccceeeecccccce--------eeeec--cccccceEEEeec
Confidence                    1 2345566544        334 45566677888999865433        23333  3355778899999


Q ss_pred             CCCEE-EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCCCc
Q 020454          173 SEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRP  250 (326)
Q Consensus       173 ~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~  250 (326)
                      +++.+ +++..+..+.+|+..+.+.+......          ..+..+.++|.  +..+++++ .++.+.+|+.... ..
T Consensus       126 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~  192 (301)
T d1l0qa2         126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAVTPD--GTKVYVANFDSMSISVIDTVTN-SV  192 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEECTT--SSEEEEEETTTTEEEEEETTTT-EE
T ss_pred             CCCeeeeeeccccceeeeeccccceeeecccC----------CCceEEEeecc--ccceeeecccccccccccccce-ee
Confidence            99766 56667889999999998887765443          23567788874  34555554 5567778887755 43


Q ss_pred             eeEEeecCCceEEEEecCCCCeEEEEc---CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEE-EEeccCccC
Q 020454          251 VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGFLEAA  325 (326)
Q Consensus       251 ~~~~~~~~~~i~~v~~s~~~~~l~~g~---~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~s~D~~~  325 (326)
                      ..... .......++|+++++.++++.   .++.|++||+.+++.+..+..  ...+.+++|+|++++| ++++.|+.+
T Consensus       193 ~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~spdg~~l~va~~~~~~i  268 (301)
T d1l0qa2         193 IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFCNTV  268 (301)
T ss_dssp             EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEEEEeCCCCEEEEEECCCCeE
Confidence            44443 345678889999999887554   346899999999999988874  4467999999999976 677778754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=8.7e-20  Score=149.87  Aligned_cols=276  Identities=11%  Similarity=0.029  Sum_probs=176.3

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeeccc
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      -+++++.++.|+|||+.+.     ++......+........+.+.  ++++++ ++++.++.|.+||+.+++.+..+...
T Consensus         3 ~~vt~~~d~~v~v~D~~s~-----~~~~~i~~~~~~~~~~~i~~s--pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMVA--PGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEEC--TTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCC-----eEEEEEECCCCCCCccEEEEC--CCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            4789999999999999987     565555443333332333343  455666 56678999999999999987776642


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------------CCcEEEEEccccccccccccceEEEEEccCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------------KGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~  162 (326)
                      ...   .....+.++.+.+        ++..++++..            ++.+.+|+.....        .++..  ...
T Consensus        76 ~~~---~~~~~~~~v~~s~--------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~--~~~  134 (337)
T d1pbyb_          76 TPE---ERVKSLFGAALSP--------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAF--EAP  134 (337)
T ss_dssp             BTT---EEEECTTCEEECT--------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEE--ECC
T ss_pred             CCc---ccccceeeEEEcC--------CCcEEEEeecCCcceeeeccccccceeeccccCCe--------EEEec--ccc
Confidence            110   0111223344433        4556666654            3455555544322        22222  234


Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCC------------ceeeeEEeecCCCcEE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT------------WFTSAAFLSIDDHRKF  230 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~~l  230 (326)
                      ..+..+.++|+++++++++.+  +.+||..+++.................+.            ...........+...+
T Consensus       135 ~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T d1pbyb_         135 RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence            567789999999999888654  77899999887766544322211110000            0000000000011122


Q ss_pred             EEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEEC
Q 020454          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (326)
Q Consensus       231 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~  310 (326)
                      .....++.+.+||...+......+..+...+..++++|++.+++.+  ++.+++||+++++.+..+. + ...+.+++|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~s  288 (337)
T d1pbyb_         213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-L-PHSYYSVNVS  288 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-C-SSCCCEEEEC
T ss_pred             eecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-C-CCCEEEEEEC
Confidence            2334456799999987743334455667788888999999998876  4789999999999998886 3 6788999999


Q ss_pred             CCCCEEEEeccCccC
Q 020454          311 PTLPIIASCGFLEAA  325 (326)
Q Consensus       311 p~~~~l~s~s~D~~~  325 (326)
                      |+|++|++++.|+.+
T Consensus       289 ~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         289 TDGSTVWLGGALGDL  303 (337)
T ss_dssp             TTSCEEEEESBSSEE
T ss_pred             CCCCEEEEEeCCCcE
Confidence            999999999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=1.7e-19  Score=149.55  Aligned_cols=177  Identities=12%  Similarity=0.078  Sum_probs=138.9

Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC--eEEEEECCCceeeeee
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTA  200 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~  200 (326)
                      ++.+++....|.|++|+++...        .+   ++.+...|.+++|+|++++|++++.+.  .|++||+++++... +
T Consensus        14 dG~~~a~~~~g~v~v~d~~~~~--------~~---~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~   81 (360)
T d1k32a3          14 DGDLIAFVSRGQAFIQDVSGTY--------VL---KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F   81 (360)
T ss_dssp             GGGCEEEEETTEEEEECTTSSB--------EE---ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C
T ss_pred             CCCEEEEEECCeEEEEECCCCc--------EE---EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-e
Confidence            4455555667899999875432        22   235678899999999999988766553  69999999876543 2


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc---
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---  277 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~---  277 (326)
                      ..         +...|.+++|+|  ++++|++++.++.+++|++... +....+..+...+.+++|+|+|++|+.+.   
T Consensus        82 ~~---------~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          82 EE---------NLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             CC---------CCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             eC---------CCceEEeeeecc--cccccceecccccccccccccc-ceeeeeecccccccchhhccceeeeeeecccc
Confidence            33         235688999998  6779999999999999999976 55677778888999999999999998543   


Q ss_pred             -------CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          278 -------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       278 -------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                             .++.+++||+.+++..... .+ ...+..++|+|++++|++++.|+..
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~~-~~~~~~~~~spdg~~l~~~s~~~~~  202 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGRKIFAAT-TE-NSHDYAPAFDADSKNLYYLSYRSLD  202 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECS-CS-SSBEEEEEECTTSCEEEEEESCCCC
T ss_pred             ccceeeccccceeeeccccCceeeec-cc-ccccccccccCCCCEEEEEeCCCce
Confidence                   3456999999988765443 34 6788999999999999999988764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1.8e-18  Score=147.34  Aligned_cols=272  Identities=10%  Similarity=-0.003  Sum_probs=155.7

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceee--eec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--AIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~--~~~   92 (326)
                      +.+++.+.+|.|+|||..++     ++...+....   .+..+.|  +++++++++++.||.|++||+.+++...  ++.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~-----~v~~~~~~g~---~~~~v~f--SpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGY---AVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----CEEEEEECSS---CEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC-----cEEEEEeCCC---CeeEEEE--CCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe
Confidence            55799999999999999988     6665655332   2334434  5667799999999999999998776432  333


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEcccccc--------------------------
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV--------------------------  145 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~--------------------------  145 (326)
                      ..     ..+.+.+.+..+.+        ++.++ ++++.++.+.+||....+.                          
T Consensus       103 ~~-----~~~~~~~~s~~~Sp--------DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2         103 IG-----SEARSIETSKMEGW--------EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             CC-----SEEEEEEECCSTTC--------TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             cC-----CCCCCeEEecccCC--------CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEE
Confidence            21     01112222222211        45554 6788899999999765331                          


Q ss_pred             ---------ccccccceEEEE-----------EccCCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCceeeeeecCCC
Q 020454          146 ---------SAESSCSTVKSW-----------NVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPP  204 (326)
Q Consensus       146 ---------~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~  204 (326)
                               .+...++.+.+|           .+.....+..++++|+++++++++ .++.+.++|..+.+.+.......
T Consensus       170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~  249 (432)
T d1qksa2         170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG  249 (432)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc
Confidence                     001112333333           333344577999999999776655 45679999999877665543221


Q ss_pred             CCCCCcCCCCceeeeEEeecCCCcEEEEE-eCCCeEEEEeCCCCCC------ceeEEeec--------------------
Q 020454          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRR------PVMSFDFR--------------------  257 (326)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~p~~~~~~l~~~-~~dg~v~iwd~~~~~~------~~~~~~~~--------------------  257 (326)
                      ...    +........+ + ..+...++. ..++.|.+|+......      ....+..+                    
T Consensus       250 ~~~----~~~~~~~~~~-~-~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~  323 (432)
T d1qksa2         250 QTP----HPGRGANFVH-P-TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  323 (432)
T ss_dssp             SSB----CCTTCEEEEE-T-TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             ccc----ccCcccceec-C-CCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecc
Confidence            111    0111111111 1 122222222 2355666665443211      01111111                    


Q ss_pred             -----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          258 -----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       258 -----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                           .....++++ ||++.+++++.|+.+++||+.++..+   ..| ...|.+++|+|||++|+.+.
T Consensus       324 ~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~-~~~v~~~~fS~DG~~v~~S~  386 (432)
T d1qksa2         324 TLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEG-QPRVVQGEFNKDGTEVWFSV  386 (432)
T ss_dssp             TTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSS-CCEEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCC-CCcEEEeEECCCCCEEEEEE
Confidence                 011223343 67777777777888888877554322   245 67899999999999875554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=4.4e-16  Score=125.43  Aligned_cols=231  Identities=12%  Similarity=0.085  Sum_probs=157.0

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCC-eEEEEecCCcEEEEeccccceeeeecccC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      ++++..+|.|++||+.++     +....+......   ..+.+  ...+. +++++..++.+.+|+..+++....+... 
T Consensus        47 ~v~~~~~~~i~v~d~~t~-----~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  115 (301)
T d1l0qa2          47 YVANAHSNDVSIIDTATN-----NVIATVPAGSSP---QGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-  115 (301)
T ss_dssp             EEEEGGGTEEEEEETTTT-----EEEEEEECSSSE---EEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred             EEEECCCCEEEEEECCCC-----ceeeeeeccccc---ccccc--ccccccccccccccceeeecccccceeeeecccc-
Confidence            467788999999999877     454454433322   22333  33344 4556677789999999888876666531 


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceE-EEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                              .....+.+.+        ++..+ ++...++.+.+|+.....        .+....  ....+..+.++|++
T Consensus       116 --------~~~~~~~~~~--------dg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~  169 (301)
T d1l0qa2         116 --------KSPLGLALSP--------DGKKLYVTNNGDKTVSVINTVTKA--------VINTVS--VGRSPKGIAVTPDG  169 (301)
T ss_dssp             --------SSEEEEEECT--------TSSEEEEEETTTTEEEEEETTTTE--------EEEEEE--CCSSEEEEEECTTS
T ss_pred             --------ccceEEEeec--------CCCeeeeeeccccceeeeeccccc--------eeeecc--cCCCceEEEeeccc
Confidence                    3344455443        34444 556667888889865433        233333  34568889999999


Q ss_pred             CEEEEecCC-CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---eCCCeEEEEeCCCCCCc
Q 020454          175 KFSLFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYDTSAQRRP  250 (326)
Q Consensus       175 ~~l~sg~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---~~dg~v~iwd~~~~~~~  250 (326)
                      +.+++++.+ +.+.+|+....+........          ..+..++|.+.  +..++++   ..+++|++||+.+. +.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--g~~~~v~~~~~~~~~v~v~D~~t~-~~  236 (301)
T d1l0qa2         170 TKVYVANFDSMSISVIDTVTNSVIDTVKVE----------AAPSGIAVNPE--GTKAYVTNVDKYFNTVSMIDTGTN-KI  236 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECS----------SEEEEEEECTT--SSEEEEEEECSSCCEEEEEETTTT-EE
T ss_pred             cceeeecccccccccccccceeeeeccccc----------CCcceeecccc--ccccccccccceeeeeeeeecCCC-eE
Confidence            877776654 66778888777665554332          33567788874  4455443   33578999999987 55


Q ss_pred             eeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEcc
Q 020454          251 VMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       251 ~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      +..+..+ ..+..++|+|||++|+ +++.++.|++||+++++++.+++.
T Consensus       237 ~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         237 TARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            6666554 5679999999999875 777899999999999999988863

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=4.1e-16  Score=128.01  Aligned_cols=279  Identities=10%  Similarity=0.008  Sum_probs=169.2

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeeccCC-CCCceEEEEEeeeCCCCCeE-EEEecCCcEEEEeccccceeeeec
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP-HSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS   92 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~   92 (326)
                      -.+++++.++.|.|||+.++     ++..++.-+ .....  .+.+  +++++++ +++..++.|.+||+.+++.+..+.
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~-----~~~~t~~~~~~~~p~--~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGPG--TAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSSC--EEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCC-----CEEEEEEcCCCCCcc--eEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            46888999999999999988     665554322 11122  2333  4556666 556678999999999998876665


Q ss_pred             ccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe------------cCCcEEEEEccccccccccccceEEEEEcc
Q 020454           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (326)
Q Consensus        93 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~------------~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~  160 (326)
                      .....  ......+.++++.+        ++..+++..            .++.+.+|+......     ...+....  
T Consensus        80 ~~~~~--~~~~~~~~~v~~s~--------DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~--  142 (346)
T d1jmxb_          80 LSSVP--GEVGRSMYSFAISP--------DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----AKPVRTFP--  142 (346)
T ss_dssp             SCCST--TEEEECSSCEEECT--------TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----BCCSEEEE--
T ss_pred             ccccc--cccCCceEEEEEec--------CCCEEEEEecCCcceeeeeccCcceEEEEeccccee-----eeEEEeee--
Confidence            31100  00001233344433        445555544            355666666544321     11222222  


Q ss_pred             CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCC------------Cce--eeeEEeecCC
Q 020454          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP------------TWF--TSAAFLSIDD  226 (326)
Q Consensus       161 ~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~~v--~~~~~~p~~~  226 (326)
                      ....+..+.+++++.+++++   ..+.+|++.+++.+..+..+.........+            ..+  ..........
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (346)
T d1jmxb_         143 MPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  219 (346)
T ss_dssp             CCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             ccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence            12345556667677766553   468899999888776655432211000000            000  0011111112


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEE
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  306 (326)
                      ...+++...++.+.+||..+..........+...+..+.+++++.+++.... +.|++||..+++.+..+..  ...+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~--~~~~~~  296 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL--DHTYYC  296 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC--SSCCCE
T ss_pred             ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC--CCCEEE
Confidence            2244555667789999998774334445567778889999999988887654 5899999999999988762  557999


Q ss_pred             EEECCCCCEEEEeccCccC
Q 020454          307 IARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       307 l~~~p~~~~l~s~s~D~~~  325 (326)
                      ++|+||+++|++++.|+.+
T Consensus       297 va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         297 VAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             EEECSSSSCEEEESBSSEE
T ss_pred             EEEcCCCCEEEEEeCCCcE
Confidence            9999999999999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=3.7e-16  Score=132.73  Aligned_cols=225  Identities=10%  Similarity=0.017  Sum_probs=150.5

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~  146 (326)
                      ++++.+.||+|+|||+.+++.+..+..        + ..+.++++.+        ++.++++++.||.+++||+..... 
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~--------g-~~~~~vafSP--------DGk~l~~~~~d~~v~vwd~~t~~~-   95 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDT--------G-YAVHISRMSA--------SGRYLLVIGRDARIDMIDLWAKEP-   95 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEEC--------C-SSEEEEEECT--------TSCEEEEEETTSEEEEEETTSSSC-
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC--------C-CCeeEEEECC--------CCCEEEEEeCCCCEEEEEccCCce-
Confidence            457788899999999999999888773        2 3477788755        677889999999999999875441 


Q ss_pred             cccccceEEEEEccCC----CceEEEEEcCCCCEEEE-ecCCCeEEEEECCCceeeeeecCCCCCCCC--cCCCCceeee
Q 020454          147 AESSCSTVKSWNVCAS----GTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLG--IFTPTWFTSA  219 (326)
Q Consensus       147 ~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~  219 (326)
                             .....+...    ..+.+++|+|+|+++++ +..++.+.+||..+++.......+......  +........+
T Consensus        96 -------~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (426)
T d1hzua2          96 -------TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  168 (426)
T ss_dssp             -------EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             -------eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEE
Confidence                   222222222    23456677889988755 457899999999998877766554433221  1222344455


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc-CCCcEEEEECCCC--------
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG--------  290 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iwd~~~~--------  290 (326)
                      .+++. ....+.+....+.+.+++.............+...+..++|+|++++++++. .+..+.+++..++        
T Consensus       169 ~~s~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         169 IASHE-HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EECSS-SSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EECCC-CCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            55553 2223334445567777776655333334445667888999999999887654 4455667766543        


Q ss_pred             ----------------------------------------------eEEEEEcceecceEEEEEECCCCCEEEE
Q 020454          291 ----------------------------------------------KLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       291 ----------------------------------------------~~~~~~~~~~~~~v~~l~~~p~~~~l~s  318 (326)
                                                                    +....+.+| ...+..++|+|++++|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~-~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS-SSCCCCEECCTTCSEEEE
T ss_pred             CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC-CCceeEEEcCCCCceEEE
Confidence                                                          233445565 677888999999999884

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.7e-15  Score=122.55  Aligned_cols=275  Identities=9%  Similarity=0.026  Sum_probs=163.9

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe-cCCcEEEEeccccceeeeecccC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      ++++.+++.|+||++...  +..++......+... .  .+.  .++++++|+++. .|+.|++|++.............
T Consensus         7 ~v~~~~~~~I~v~~~~~~--~~l~~~~~~~~~~~v-~--~la--~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHE--GALTLTQVVDVPGQV-Q--PMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEGGGTEEEEEEECTT--SCEEEEEEEECSSCC-C--CEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCC--CCeEEEEEEcCCCCE-e--EEE--EeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            578889999999999854  333444444433322 2  222  345677775554 58999999987554332222110


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEec-CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~-~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           .....+.++++.+        +++.+++++. ++.+.+|+......       ........+...+.++.++|++
T Consensus        80 -----~~~~~p~~l~~sp--------Dg~~l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~s~d~  139 (333)
T d1ri6a_          80 -----ALPGSLTHISTDH--------QGQFVFVGSYNAGNVSVTRLEDGLP-------VGVVDVVEGLDGCHSANISPDN  139 (333)
T ss_dssp             -----ECSSCCSEEEECT--------TSSEEEEEETTTTEEEEEEEETTEE-------EEEEEEECCCTTBCCCEECTTS
T ss_pred             -----ccCCCceEEEEcC--------CCCEEeecccCCCceeeeccccccc-------eecccccCCCccceEEEeeecc
Confidence                 1223455677654        5567777764 67888888654331       1122223345668889999999


Q ss_pred             CEEEEec-CCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCcee-
Q 020454          175 KFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM-  252 (326)
Q Consensus       175 ~~l~sg~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-  252 (326)
                      +++++++ .+..|.+|+................   .........++|++. ....+.+....+...+|+......... 
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~g~~p~~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIEC  215 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeee---eecCCCccEEEEecc-ceeEEeeccccCceEEEeecccccceee
Confidence            8877766 4567999998764332211110000   011133567888874 232444556677888888654322221 


Q ss_pred             --EEe------ecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEcce--ecceEEEEEECCCCCEEEEecc
Q 020454          253 --SFD------FRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGF  321 (326)
Q Consensus       253 --~~~------~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~s~  321 (326)
                        ...      ........+++++++++++ ++..++.+.+|++...........+  ....+++++|+|+|++|++++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~  295 (333)
T d1ri6a_         216 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ  295 (333)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred             eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEEC
Confidence              111      1224567788999998777 5566789999998765333222221  1456789999999998877765


Q ss_pred             C
Q 020454          322 L  322 (326)
Q Consensus       322 D  322 (326)
                      |
T Consensus       296 ~  296 (333)
T d1ri6a_         296 K  296 (333)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=6.3e-15  Score=125.13  Aligned_cols=205  Identities=11%  Similarity=0.044  Sum_probs=143.8

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~  147 (326)
                      +++.+.+|+|.|||..+++++..+..        + ..+.++.+.+        ++.++++++.||.+.+||+...+.. 
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~--------g-~~~~~v~fSp--------DG~~l~~~s~dg~v~~~d~~t~~~~-   96 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDT--------G-YAVHISRLSA--------SGRYLFVIGRDGKVNMIDLWMKEPT-   96 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEEC--------S-SCEEEEEECT--------TSCEEEEEETTSEEEEEETTSSSCC-
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeC--------C-CCeeEEEECC--------CCCEEEEEcCCCCEEEEEeeCCCce-
Confidence            58889999999999999999988874        2 2477777765        6778999999999999998754310 


Q ss_pred             ccccceEEEEEc--cCCCceEEEEEcCCCCEE-EEecCCCeEEEEECCCceeeeeecCCCCCC--CCcCCCCceeeeEEe
Q 020454          148 ESSCSTVKSWNV--CASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNS--LGIFTPTWFTSAAFL  222 (326)
Q Consensus       148 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~  222 (326)
                           .+.....  .+...+.+..|+|||++| +++..++.|++||..+++.+.....+....  ..+........+.++
T Consensus        97 -----~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  171 (432)
T d1qksa2          97 -----TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS  171 (432)
T ss_dssp             -----EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             -----EEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC
Confidence                 1111111  111234455677899876 678889999999999998877766543222  122234456678888


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEc
Q 020454          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       223 p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~  297 (326)
                      |. ...++++...++.|.+||.... +...... ........++|+|+|+++++++. ++.+.++|..+++....+.
T Consensus       172 ~d-g~~~~vs~~~~~~i~~~d~~~~-~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         172 HY-RPEFIVNVKETGKILLVDYTDL-NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             SS-SSEEEEEETTTTEEEEEETTCS-SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CC-CCEEEEEEccCCeEEEEEccCC-CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            74 3335567788899999998865 3233222 33456789999999998876654 5679999998877665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1.7e-14  Score=118.98  Aligned_cols=265  Identities=11%  Similarity=0.088  Sum_probs=153.1

Q ss_pred             CcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEE----------ecCCcEEEEeccccceeeee
Q 020454           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA----------RKNGLTDILNPLNGDLRVAI   91 (326)
Q Consensus        22 ~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g----------~~dg~i~i~~~~~~~~~~~~   91 (326)
                      ..+.|.|||..++     ++..+.......    .+  ..++++++|++.          ..|+.|++||..+++.+..+
T Consensus        26 ~~~~v~v~D~~tg-----~~~~~~~~g~~~----~~--a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~   94 (355)
T d2bbkh_          26 AVTQQFVIDGEAG-----RVIGMIDGGFLP----NP--VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI   94 (355)
T ss_dssp             SSEEEEEEETTTT-----EEEEEEEECSSC----EE--EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE
T ss_pred             CcCeEEEEECCCC-----cEEEEEECCCCC----ce--EEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEE
Confidence            4567999999887     454444322222    22  234556667654          45789999999999887776


Q ss_pred             cccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe--cCCcEEEEEccccccc--------------------ccc
Q 020454           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVS--------------------AES  149 (326)
Q Consensus        92 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~--~~g~v~i~~~~~~~~~--------------------~~~  149 (326)
                      ........... .....+.+.+        ++..++.+.  .+..+.+|+.......                    ...
T Consensus        95 ~~~~~~~~~~~-~~~~~~~~s~--------dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
T d2bbkh_          95 ELPDAPRFLVG-TYPWMTSLTP--------DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  165 (355)
T ss_dssp             EETTCCCCCBS-CCGGGEEECT--------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             ecCCcceeecC-CCCceEEEec--------CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence            54221111111 1122344433        445555553  4566777876553321                    011


Q ss_pred             ccceEEEEEccCCC----------------ceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeee--ecCCCCCCCCc-
Q 020454          150 SCSTVKSWNVCASG----------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPPKNSLGI-  210 (326)
Q Consensus       150 ~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~-  210 (326)
                      .++....+......                .+....+.+++..++.++.++.+.+|++..++....  ...+....... 
T Consensus       166 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (355)
T d2bbkh_         166 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  245 (355)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             CCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeee
Confidence            22222222211111                133455666777888889999999999987654221  11111000000 


Q ss_pred             CCCCceeeeEEeecCCCcEEEEEeCC----------CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe--EEEEcC
Q 020454          211 FTPTWFTSAAFLSIDDHRKFVAGTND----------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN--IYIGNG  278 (326)
Q Consensus       211 ~~~~~v~~~~~~p~~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~--l~~g~~  278 (326)
                      ..+.....++++|  ++..++....+          ..|.+||..++ +.+..+..+ ..+.+++|+|||+.  ++++..
T Consensus       246 ~~p~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~-~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         246 WRPGGWQQVAYHR--ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERLAKFEMG-HEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             EEECSSSCEEEET--TTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEE-EEECEEEECCSSSCEEEEEETT
T ss_pred             eeccceEEEEEeC--CCCeEEEEeccCCceeecCCCCeEEEEeCCCC-cEEEEecCC-CCEEEEEEcCCCCeEEEEEECC
Confidence            0112234566776  44455544322          47999999987 556666544 55789999999973  457788


Q ss_pred             CCcEEEEECCCCeEEEEEcceecceEEEEEECC
Q 020454          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      |+.|++||+++++.+.++.++ ...-..+.+.+
T Consensus       322 d~~i~v~D~~tg~~~~~i~~~-G~~p~~i~~~d  353 (355)
T d2bbkh_         322 DKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  353 (355)
T ss_dssp             TTEEEEEETTTCCEEEEECCC-CSSCCEEECCC
T ss_pred             CCEEEEEECCCCCEEEEEeCc-CCCccEEEeCC
Confidence            999999999999999999864 44444444433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=1.9e-14  Score=117.47  Aligned_cols=244  Identities=14%  Similarity=0.076  Sum_probs=144.0

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE-EEEeeeCCCCCeEEEEe------------cCCcEEEEecc
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL-AASIDDSQNDPLLAVAR------------KNGLTDILNPL   83 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~------------~dg~i~i~~~~   83 (326)
                      ++++..+|.|++||+.++     ++..+...+....... ......++.+++++++.            .++.+.+||..
T Consensus        49 ~v~~~~~~~v~v~D~~t~-----~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~  123 (337)
T d1pbyb_          49 YATVNKSESLVKIDLVTG-----ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE  123 (337)
T ss_dssp             EEEETTTTEEEEEETTTC-----CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred             EEEECCCCeEEEEECCCC-----cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc
Confidence            467788999999999987     4443433222111110 01112234455666665            45788899998


Q ss_pred             ccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccccccccc-----------ccc
Q 020454           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-----------SCS  152 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~-----------~~~  152 (326)
                      +++.+..+...         ..+.++.+.+        ++..+++++  +.+.+|+..........           ...
T Consensus       124 ~~~~~~~~~~~---------~~~~~~~~s~--------dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         124 TLSRRKAFEAP---------RQITMLAWAR--------DGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             TTEEEEEEECC---------SSCCCEEECT--------TSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             CCeEEEecccc---------CCceEEEEcC--------CCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCC
Confidence            88876666531         3455566544        556777765  44667886543210000           000


Q ss_pred             eEEEEEccCCCc---eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          153 TVKSWNVCASGT---IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       153 ~~~~~~~~~~~~---v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                      ....|.......   ........+...+..+..++.+.+||+.+++........        +...+....+.|  ++.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~  254 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI--------MDVFYFSTAVNP--AKTR  254 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE--------CSSCEEEEEECT--TSSE
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC--------CCcceEEEEecc--cceE
Confidence            000111100001   111122223333334555667889998877654332111        113355666666  4445


Q ss_pred             EEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       230 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      ++..  ++.|++||+.+. +.+..+. +...+.+++|+|||++|++++.+|.|++||.++++.+.+++.
T Consensus       255 ~~~~--~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         255 AFGA--YNVLESFDLEKN-ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEE--ESEEEEEETTTT-EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEc--cccEEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            5554  589999999987 5566664 446789999999999999999999999999999999988864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=1.6e-12  Score=107.72  Aligned_cols=264  Identities=10%  Similarity=-0.025  Sum_probs=148.8

Q ss_pred             cCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEe----------cCCcEEEEeccccceeee
Q 020454           21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVA   90 (326)
Q Consensus        21 ~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~dg~i~i~~~~~~~~~~~   90 (326)
                      +..+.|.|||..++     ++..++......    .+  ..++++++|+++.          .++.|.+||..+++.+..
T Consensus        44 ~~~~~v~v~D~~tg-----~~~~~~~~~~~~----~~--a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~  112 (373)
T d2madh_          44 SAIIQQWVLDAGSG-----SILGHVNGGFLP----NP--VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD  112 (373)
T ss_pred             CCCceEEEEECCCC-----CEEEEEeCCCCc----cE--EEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE
Confidence            34467889998877     555555433222    12  2345566777764          468899999999988776


Q ss_pred             ecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE--ecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~--~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      +...        ..........+ ....-+.++..++..  ..++.+.+|+.....        ..     .+.....++
T Consensus       113 ~~~~--------~~~~~~~~~~~-~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~--------~~-----~~~~~~~~~  170 (373)
T d2madh_         113 IELP--------DAPRFDVGPYS-WMNANTPNNADLLFFQFAAGPAVGLVVQGGSS--------DD-----QLLSSPTCY  170 (373)
T ss_pred             EecC--------CcceeEeccCC-CcEEEEeCCCcEEEEEEcCCCceEEeeccCCe--------EE-----EEeccceeE
Confidence            6531        11111111100 000000022222221  223344444432211        11     112245678


Q ss_pred             EEcCCCC-EEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          169 KVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       169 ~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      .++|+++ .+++.+.|+.+.+||....+.............   .........+.  .++ .++..+.++.+.+|+....
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA---QNLLTQPAQAN--KSG-RIVWPVYSGKILQADISAA  244 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC---ccceeeeEEEC--CCc-eEEEecCCceEEEEEcCCC
Confidence            8899885 456888999999999988776655433221110   01112233333  244 5667778899999997754


Q ss_pred             CCc-eeEEee----------cCCceEEEEecCCCCeE----------EEEcCCCcEEEEECCCCeEEEEEcceecceEEE
Q 020454          248 RRP-VMSFDF----------RETPIKAVAEEPDSFNI----------YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (326)
Q Consensus       248 ~~~-~~~~~~----------~~~~i~~v~~s~~~~~l----------~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  306 (326)
                      ... ...+..          .......+++++++..+          +....++.+.+||..+++.+..+. + ...+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~-~~~~~~  322 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-L-GHDVDA  322 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-C-CCCeeE
Confidence            210 111111          11223445566665544          445666789999999999998876 3 668999


Q ss_pred             EEECCCCC--EEEEeccCccC
Q 020454          307 IARHPTLP--IIASCGFLEAA  325 (326)
Q Consensus       307 l~~~p~~~--~l~s~s~D~~~  325 (326)
                      ++|+||++  ++++++.|+.+
T Consensus       323 ~a~spDG~~~l~vt~~~d~~v  343 (373)
T d2madh_         323 ISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             EEECCCCCEEEEEEeCCCCeE
Confidence            99999998  45788888864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.62  E-value=1.1e-12  Score=108.75  Aligned_cols=260  Identities=8%  Similarity=0.014  Sum_probs=147.8

Q ss_pred             ecCcccEEEEEecCCcCCCcceeeeccCCCCCceEE-----EEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeeccc
Q 020454           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVL-----AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (326)
Q Consensus        20 ~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~   94 (326)
                      +..+|.|+|||+.++     ++......+.......     .+.+......-+++....++.+.+|+....+......  
T Consensus        93 ~~~~~~v~v~D~~t~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--  165 (373)
T d2madh_          93 GKRTDYVEVFDPVTF-----LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS--  165 (373)
T ss_pred             cccceEEEEEECCCC-----cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec--
Confidence            356788999999987     4443433332222111     1122222222123333445678888876665543333  


Q ss_pred             CCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEc-cCCCceEEEEEcCC
Q 020454           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDIS  173 (326)
Q Consensus        95 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~  173 (326)
                                ...++.+.+.       ....+++.+.||.+.+|+.........    ....... ........+.++++
T Consensus       166 ----------~~~~~~~s~~-------g~~~~v~~~~dg~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         166 ----------SPTCYHIHPG-------APSTFYLLCAQGGLAKTDHAGGAAGAG----LVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             ----------cceeEEEecC-------CCcEEEEEcCCCeEEEEEcCCceeeEE----EeeeccccCccceeeeEEECCC
Confidence                      1223333221       234568889999999999765432100    0000000 11112344556665


Q ss_pred             CCEEEEecCCCeEEEEECCCceeeee--ecCCCCCCCCc-CCCCceeeeEEeec--------CCCcEEEEEeCCCeEEEE
Q 020454          174 EKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPPKNSLGI-FTPTWFTSAAFLSI--------DDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       174 ~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~-~~~~~v~~~~~~p~--------~~~~~l~~~~~dg~v~iw  242 (326)
                      +.++ ..+.++.+.+|+.........  ........... ..+.....++++|.        .++..+++...++.+.+|
T Consensus       225 ~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         225 GRIV-WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             ceEE-EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence            5554 556788999999887653222  11111100000 01112223333332        123355667778899999


Q ss_pred             eCCCCCCceeEEeecCCceEEEEecCCCCe--EEEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECC
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFN--IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~--l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      |..++ +.+..+. +...+..++|+|||+.  +++++.|+.|++||+.+++.+.++..+ ....+.|++.+
T Consensus       304 d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~-g~~P~~l~~~~  371 (373)
T d2madh_         304 TGLVG-QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL-GSGPQVLSVMN  371 (373)
T ss_pred             ECCCC-cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC-CCCCcEEEEec
Confidence            99987 5566654 4567899999999984  458899999999999999999999876 66677777654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=3.2e-13  Score=110.38  Aligned_cols=240  Identities=10%  Similarity=0.003  Sum_probs=136.4

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEE--EEeeeCCCCCeEEEEe------------cCCcEEEEec
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLA--ASIDDSQNDPLLAVAR------------KNGLTDILNP   82 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~g~------------~dg~i~i~~~   82 (326)
                      ++++..+|.|++||+.++     ++...+...........  .....++++++++++.            .++.+.+|+.
T Consensus        55 ~v~~~~~~~v~~~d~~t~-----~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~  129 (346)
T d1jmxb_          55 YVLNNHYGDIYGIDLDTC-----KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  129 (346)
T ss_dssp             EEEETTTTEEEEEETTTT-----EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             EEEECCCCcEEEEeCccC-----eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEec
Confidence            567778999999999887     44444332222211110  1112244555666654            4677889988


Q ss_pred             cccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccccceEEEEEcc--
Q 020454           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--  160 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~--  160 (326)
                      .+++....+.....      ...+..+. +.        .+..+++.+  +.+.+|++.....        ++.+...  
T Consensus       130 ~~~~~~~~~~~~~~------~~~~~~~~-~~--------~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~  184 (346)
T d1jmxb_         130 ADGLEAKPVRTFPM------PRQVYLMR-AA--------DDGSLYVAG--PDIYKMDVKTGKY--------TVALPLRNW  184 (346)
T ss_dssp             GGGGGBCCSEEEEC------CSSCCCEE-EC--------TTSCEEEES--SSEEEECTTTCCE--------EEEECSTTC
T ss_pred             ccceeeeEEEeeec------cCceEEEE-ec--------CCCEEEEeC--CcceEEEccCCCE--------EEEEecCCC
Confidence            87776554433110      01122122 11        344555543  4567777654321        1111110  


Q ss_pred             -----------------CCC-ceE----EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceee
Q 020454          161 -----------------ASG-TIA----FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (326)
Q Consensus       161 -----------------~~~-~v~----~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (326)
                                       ... .+.    ...+.+....++++..+..+.+||+.++.........        +...+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  256 (346)
T d1jmxb_         185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--------LTELYFT  256 (346)
T ss_dssp             CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--------CSSCEEE
T ss_pred             ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec--------ccceeEE
Confidence                             000 011    1112223344455556667888888776654332111        1133566


Q ss_pred             eEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       219 ~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      +.+++. +. .++... ++.|++||+.++ +.+..+.. ...+.+++|+|||++|++++.||.|++||.++++.+.+++.
T Consensus       257 ~~~~~~-~~-~~~~~~-~~~v~v~d~~~~-~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         257 GLRSPK-DP-NQIYGV-LNRLAKYDLKQR-KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEECSS-CT-TEEEEE-ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCC-CC-EEEEec-CCeEEEEECCCC-cEEEEEcC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            777764 33 455544 468999999977 55666643 45789999999999999999999999999999999998884


Q ss_pred             e
Q 020454          299 K  299 (326)
Q Consensus       299 ~  299 (326)
                      +
T Consensus       332 p  332 (346)
T d1jmxb_         332 P  332 (346)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1e-12  Score=108.00  Aligned_cols=233  Identities=12%  Similarity=-0.005  Sum_probs=144.8

Q ss_pred             CCCCeEEEE-----ecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE--------
Q 020454           63 QNDPLLAVA-----RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--------  129 (326)
Q Consensus        63 ~~~~~l~~g-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~--------  129 (326)
                      ++++.+++.     ..++.|.+||..+++.+..+..          +...++++.+        ++.++++.        
T Consensus        11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~----------g~~~~~a~Sp--------Dg~~l~v~~~~~~~~~   72 (355)
T d2bbkh_          11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG----------GFLPNPVVAD--------DGSFIAHASTVFSRIA   72 (355)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE----------CSSCEEEECT--------TSSCEEEEEEEEEETT
T ss_pred             CCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC----------CCCCceEEcC--------CCCEEEEEeCCCcccc
Confidence            344455544     3456799999999998877764          2333566544        45556554        


Q ss_pred             --ecCCcEEEEEccccccccccccceEEEEEccC------CCceEEEEEcCCCCEEEEe--cCCCeEEEEECCCceeeee
Q 020454          130 --TTKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFG--GKGVEVNVWDLDKCEKIWT  199 (326)
Q Consensus       130 --~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~sg--~~d~~i~iwd~~~~~~~~~  199 (326)
                        ..++.|.+||......        +.......      ......+.|+|++++++++  +.+..+.+||..+++.+..
T Consensus        73 ~g~~d~~v~v~D~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d2bbkh_          73 RGERTDYVEVFDPVTLLP--------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  144 (355)
T ss_dssp             EEEEEEEEEEECTTTCCE--------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             ccCCCCEEEEEECCCCCE--------EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeE
Confidence              3478899998765432        22211111      1223457899999877665  4567899999988765443


Q ss_pred             ecCCCC----------------------------C--------CCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEe
Q 020454          200 AKPPPK----------------------------N--------SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (326)
Q Consensus       200 ~~~~~~----------------------------~--------~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd  243 (326)
                      +.....                            .        .........+....+.+  ++..++.++.++.+++|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~  222 (355)
T d2bbkh_         145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ--KAGRLVWPTYTGKIHQID  222 (355)
T ss_dssp             EECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET--TTTEEEEEBTTSEEEEEE
T ss_pred             EecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC--CCCeEEEecCCCeEEEEe
Confidence            221100                            0        00001111233445554  344788889999999999


Q ss_pred             CCCCCCce-eEEeec----------CCceEEEEecCCCCeEEEEcCC----------CcEEEEECCCCeEEEEEcceecc
Q 020454          244 TSAQRRPV-MSFDFR----------ETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKCSG  302 (326)
Q Consensus       244 ~~~~~~~~-~~~~~~----------~~~i~~v~~s~~~~~l~~g~~d----------g~v~iwd~~~~~~~~~~~~~~~~  302 (326)
                      +....... .....+          ......+++++++..++....+          +.|.+||..+++.+..+..  ..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~--~~  300 (355)
T d2bbkh_         223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GH  300 (355)
T ss_dssp             CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EE
T ss_pred             cCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC--CC
Confidence            98653211 111111          1233457899999988866544          3699999999999988873  56


Q ss_pred             eEEEEEECCCCC--EEEEeccCccC
Q 020454          303 SIRSIARHPTLP--IIASCGFLEAA  325 (326)
Q Consensus       303 ~v~~l~~~p~~~--~l~s~s~D~~~  325 (326)
                      .+.+++|+|+++  ++++++.|+.+
T Consensus       301 ~~~~~a~spDG~~~l~v~~~~d~~i  325 (355)
T d2bbkh_         301 EIDSINVSQDEKPLLYALSTGDKTL  325 (355)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEE
T ss_pred             CEEEEEEcCCCCeEEEEEECCCCEE
Confidence            789999999997  45677778764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1e-10  Score=94.75  Aligned_cols=249  Identities=11%  Similarity=0.098  Sum_probs=143.6

Q ss_pred             eeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEec-CCcEEEEeccccceeeeecccC
Q 020454           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAG   95 (326)
Q Consensus        17 l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~   95 (326)
                      ++++..+|.|++|++... ....++.........+.   .+  ..++++++|+++.. ++.|.+|+............. 
T Consensus        52 ~v~~~~d~~i~~~~i~~~-~~~~~~~~~~~~~~~p~---~l--~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-  124 (333)
T d1ri6a_          52 YVGVRPEFRVLAYRIAPD-DGALTFAAESALPGSLT---HI--STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-  124 (333)
T ss_dssp             EEEETTTTEEEEEEECTT-TCCEEEEEEEECSSCCS---EE--EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-
T ss_pred             EEEECCCCeEEEEEEeCC-CCcEEEeeecccCCCce---EE--EEcCCCCEEeecccCCCceeeeccccccceeccccc-
Confidence            356667899999999865 23332322222222221   22  33456677888774 678999988766554443321 


Q ss_pred             CCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCC
Q 020454           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (326)
Q Consensus        96 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (326)
                           .+...+.++.+.+        +...++.+. .+..+.+|+........   .................+.+++++
T Consensus       125 -----~~~~~~~~v~~s~--------d~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         125 -----EGLDGCHSANISP--------DNRTLWVPALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             -----CCCTTBCCCEECT--------TSSEEEEEEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTS
T ss_pred             -----CCCccceEEEeee--------cceeeeccccccceeeEEEeccCCcce---eeeceeeeeecCCCccEEEEeccc
Confidence                 2223444454433        444555544 55678888865433211   111122233445567899999998


Q ss_pred             CEEEEe-cCCCeEEEEECCCcee----eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 020454          175 KFSLFG-GKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (326)
Q Consensus       175 ~~l~sg-~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~  249 (326)
                      .+++.. ...+...+|+......    ..........   .....+...+++++. ....++++..++.+.+|++.....
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~d-~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN---FSDTRWAADIHITPD-GRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT---CCSCCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSC
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecC---CCccccceeEEEecc-cCceeeecccCCeEEEEEEcCCCC
Confidence            777554 4567788888754322    1122211111   112245667778773 233555667788999999875433


Q ss_pred             cee--EEeecCCceEEEEecCCCCeEEEEc-CCCcEEEE--ECCCCeE
Q 020454          250 PVM--SFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRTGKL  292 (326)
Q Consensus       250 ~~~--~~~~~~~~i~~v~~s~~~~~l~~g~-~dg~v~iw--d~~~~~~  292 (326)
                      ...  ........+..++|+|||++|++++ .++.|.+|  |.++|++
T Consensus       265 ~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         265 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            222  2223345678899999999988665 46889998  5567754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=8e-12  Score=103.88  Aligned_cols=287  Identities=11%  Similarity=0.033  Sum_probs=157.0

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCcceeeecc--------------------------CCCCCceEEEEEee-eCCCCCe
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG--------------------------DPHSSNCVLAASID-DSQNDPL   67 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~-~~~~~~~   67 (326)
                      +.+++++.+|.|+||++.+. .... .+..|.                          +..++    +.+.. ...++++
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~-r~l~-~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP----~~s~t~gtpDGr~   85 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSM-RELM-RIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHP----HISMTDGRYDGKY   85 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTT-EEEE-EECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCC----EEEEETTEEEEEE
T ss_pred             EEEEeCCCCCcEEEEeCCCC-cEEE-EEEeEcCCCCEEEEECCccceEEecccccccCcccCC----CcceecccCCCCE
Confidence            77899999999999999866 1111 111111                          10111    12221 1234666


Q ss_pred             EEE-EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCce-EEEEecCCcEEE------EE
Q 020454           68 LAV-ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTTKGKASM------RS  139 (326)
Q Consensus        68 l~~-g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-l~~~~~~g~v~i------~~  139 (326)
                      |++ ...+++|.++|+.+.+....+..       +....+.++.+.+        ++++ ++++.....+.+      ++
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~i-------P~g~gphgi~~sp--------dg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHI-------PNVQAIHGLRLQK--------VPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC-------TTCCCEEEEEECC--------SSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEec-------CCCCCccceEEec--------cCCEEEEEeccCCcccccCcccccc
Confidence            655 46789999999998887665543       2224566666544        2232 334433333322      11


Q ss_pred             cccccc-cccc-ccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC-e--------------EEEEECCC-------ce
Q 020454          140 IEVTKV-SAES-SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-E--------------VNVWDLDK-------CE  195 (326)
Q Consensus       140 ~~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-~--------------i~iwd~~~-------~~  195 (326)
                      ...... .... ....-..|++.-......+.++|+|+++++.+.+. .              |.+.+...       ++
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk  230 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGN  230 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTC
T ss_pred             cccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCC
Confidence            000000 0000 00011223333345677899999999887766542 1              22222110       00


Q ss_pred             ee-------eeecCCCCC--CCCcCCCCceeeeEEeecCCCcEE-EEEeCCCeEEEEeCCCCC-------CceeEEeecC
Q 020454          196 KI-------WTAKPPPKN--SLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQR-------RPVMSFDFRE  258 (326)
Q Consensus       196 ~~-------~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~~l-~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~  258 (326)
                      ..       ..+......  ...+..+.....+.++|  +|+++ +++..+++|.+||+....       .+...+..+.
T Consensus       231 ~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSP--DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~  308 (441)
T d1qnia2         231 FKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSP--DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP  308 (441)
T ss_dssp             CBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECT--TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC
T ss_pred             EEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECC--CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec
Confidence            00       000000000  00122334556788888  56655 567889999999976421       1111121111


Q ss_pred             ---CceEEEEecCCCCeEEEEcCCCcEEEEECCC----------CeEEEEE-----cceecceEEEEEECCCCCEEEEe-
Q 020454          259 ---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------GKLLGCF-----IGKCSGSIRSIARHPTLPIIASC-  319 (326)
Q Consensus       259 ---~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~----------~~~~~~~-----~~~~~~~v~~l~~~p~~~~l~s~-  319 (326)
                         -.....+|+++|+.+.+...|..|..|++..          ...+.++     .|| ...+.+..++|+|++|+++ 
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH-~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH-NHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTSTTCCCCEEEEEE
T ss_pred             ccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC-CccccccccCCCCcEEEecC
Confidence               1223458999998888999999999999742          1234444     466 7788888999999999999 


Q ss_pred             --ccCccC
Q 020454          320 --GFLEAA  325 (326)
Q Consensus       320 --s~D~~~  325 (326)
                        |.|+..
T Consensus       388 k~s~dr~~  395 (441)
T d1qnia2         388 KFSKDRFL  395 (441)
T ss_dssp             SCCGGGSC
T ss_pred             ccccccCc
Confidence              878754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=3.8e-11  Score=99.27  Aligned_cols=222  Identities=11%  Similarity=0.003  Sum_probs=124.2

Q ss_pred             CCCCCeEEEE----------ecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-
Q 020454           62 SQNDPLLAVA----------RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-  130 (326)
Q Consensus        62 ~~~~~~l~~g----------~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-  130 (326)
                      +++++.|++.          ..|+.|++||..+++.+..+............. ...+.+.+        ++.+++++. 
T Consensus        73 spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~-p~~~a~Sp--------DGk~l~va~~  143 (368)
T d1mdah_          73 GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR-VHIIGNCA--------SSACLLFFLF  143 (368)
T ss_dssp             CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC-TTSEEECT--------TSSCEEEEEC
T ss_pred             CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCC-ccceEECC--------CCCEEEEEeC
Confidence            3445556664          357889999999988877665321111111111 12345443        556676665 


Q ss_pred             cCCcEEEEEcccccc--------------------ccccccceEEEEEccCCCc----------------eEEEEEcCCC
Q 020454          131 TKGKASMRSIEVTKV--------------------SAESSCSTVKSWNVCASGT----------------IAFSKVDISE  174 (326)
Q Consensus       131 ~~g~v~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~  174 (326)
                      .++.+.+||+.....                    .....++.+..+.......                +....+.+++
T Consensus       144 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         144 GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence            579999999876432                    1122344444444332211                2244455555


Q ss_pred             CEEEEecCCCeEEEEECCCceeeeee--cCCCCCCCCc-CCCCceeeeEEeecCCCcEEEEEe-C--------CCeEEEE
Q 020454          175 KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGT-N--------DHQVRLY  242 (326)
Q Consensus       175 ~~l~sg~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~l~~~~-~--------dg~v~iw  242 (326)
                      ..+.+.  ++.+.++++.........  .......... ..+.....++++|.  +..++... .        ...|.+|
T Consensus       224 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~--~~~~~v~~~~~~~~~~~~~~~v~v~  299 (368)
T d1mdah_         224 MLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN--TDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             EEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT--TTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             EEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC--CCEEEEEecCCCceeecCCceEEEE
Confidence            554433  345566665544332211  1110000000 01111234566663  33443332 1        2368999


Q ss_pred             eCCCCCCceeEEeecCCceEEEEecCCCCe-E-EEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFN-I-YIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~-l-~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      |..++ +.+..+... ..+..++|+|||+. + +++..++.|++||..+++.+.+++.
T Consensus       300 D~~t~-~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         300 TASVG-QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ESSSC-CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ECCCC-cEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99987 556666544 56889999999973 3 4777889999999999999998874

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=6e-10  Score=91.91  Aligned_cols=62  Identities=18%  Similarity=0.060  Sum_probs=46.0

Q ss_pred             EEEEecCCCCeEEEEcCC---------CcEEEEECCCCeEEEEEcceecceEEEEEECCCCC--EEEEeccCccC
Q 020454          262 KAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGFLEAA  325 (326)
Q Consensus       262 ~~v~~s~~~~~l~~g~~d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~s~D~~~  325 (326)
                      ..+++++++..+++...+         ..|.+||..+++.+..+..  ...+.+++|+||++  ++++++.|+.+
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC--CCceeEEEECCCCCEEEEEEeCCCCeE
Confidence            346788888877754332         2589999999998887763  56799999999986  35666777654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.19  E-value=1.4e-10  Score=99.05  Aligned_cols=147  Identities=7%  Similarity=-0.037  Sum_probs=109.9

Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---------CC
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH  237 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---------dg  237 (326)
                      .+.|.+++.++..  .|+.|.+||+.+++....+.++...    .+...|.++.|+|  |+++|+..+.         ++
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~   92 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFD----EFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTA   92 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTT----TSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhh----hccCccceeEECC--CCCEEEEEECCcceeeeccCc
Confidence            4678888888765  5778999999998876555544322    1335688999998  6778887743         56


Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEccee-----------------
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------------  300 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~-----------------  300 (326)
                      .+.+||+.++ + +..+..+...+..+.|||||++||.. .++.+++|+..+++.......+.                 
T Consensus        93 ~~~l~d~~~~-~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          93 SYDIYDLNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EEEEEETTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEECCCC-c-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            7899999976 3 56677788889999999999999984 56789999999887654332110                 


Q ss_pred             cceEEEEEECCCCCEEEEeccCcc
Q 020454          301 SGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       301 ~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .+....+.|+|||+.|+....|..
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECT
T ss_pred             cCCccccEECCCCCccceeEecCC
Confidence            223456889999999999988754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.19  E-value=7e-09  Score=86.02  Aligned_cols=231  Identities=8%  Similarity=-0.014  Sum_probs=137.4

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCC-------------CCe------eeeecccccccccCCCCceE-E
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED-------------DGI------VGLHLFKRQREESSSRSRTL-L  127 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~i------~~l~~~~~~~~~~~~~~~~l-~  127 (326)
                      +++|+.+|.|++|++.+++.+..+..+.+...+.-.             ...      ..+....     ...++.++ +
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~-----gtpDGr~lfV   88 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD-----GRYDGKYLFI   88 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET-----TEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec-----ccCCCCEEEE
Confidence            677888999999999999988887765443211000             000      0011100     00134445 4


Q ss_pred             EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCC--EEEEecCCC-----------------eEEE
Q 020454          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGV-----------------EVNV  188 (326)
Q Consensus       128 ~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~-----------------~i~i  188 (326)
                      ....++.|.++|++..+        ..++..+........++++|+++  |++..+.+.                 .+..
T Consensus        89 ~d~~~~rVavIDl~t~k--------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          89 NDKANTRVARIRLDIMK--------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EETTTTEEEEEETTTTE--------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             EcCCCCEEEEEECCCCc--------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            44578889999977544        45556666677899999999986  555544432                 2345


Q ss_pred             EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC---------------------------------
Q 020454          189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------------------------------  235 (326)
Q Consensus       189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~---------------------------------  235 (326)
                      +|..+.+..+++...          .....+.|+|  +++++++.+.                                 
T Consensus       161 iD~~t~~v~~qI~v~----------~~p~~v~~sp--dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         161 IDAETMDVAWQVIVD----------GNLDNTDADY--TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             EETTTCSEEEEEEES----------SCCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             ecCccceeeEEEecC----------CCccceEECC--CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence            777766655543321          1234556666  4445555443                                 


Q ss_pred             --------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEE--------EEEcc
Q 020454          236 --------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLL--------GCFIG  298 (326)
Q Consensus       236 --------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~--------~~~~~  298 (326)
                              ++.+.+++.... ..+..+..... ...+.++|||++++ ++..+++|.+||+.+.+..        ..+.+
T Consensus       229 Gk~~~v~~~~v~vvd~~~~~-~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGES-EFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSSC-SSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCEEEeCCCCcEEEEcccCC-ceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                    234444444433 44566666545 46789999999886 6778999999998752210        01111


Q ss_pred             e--ecceEEEEEECCCCCEEEEeccCccC
Q 020454          299 K--CSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       299 ~--~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                      +  ..-.....+|++++..+.|.+.|.++
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v  335 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQV  335 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             ecccccCcccceecCCceEEEcccccceE
Confidence            1  01123456899999888888888653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=1.9e-07  Score=74.38  Aligned_cols=233  Identities=8%  Similarity=-0.056  Sum_probs=146.7

Q ss_pred             eCCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEc
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~  140 (326)
                      ..+++.++++...+++|..|+.. ++......         ....+.++++.+        +++.+++...++.+..++.
T Consensus        35 v~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~---------~~~~~~gla~~~--------dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          35 SAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT---------VEGKVSGLAFTS--------NGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-CCEEEEEE---------CSSEEEEEEECT--------TSCEEEEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc---------CCCCcceEEEcC--------CCCeEEEecCCceEEEEEe
Confidence            34566788888889999999874 44322222         114677777644        5566777778888888875


Q ss_pred             cccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCC-CCCCCCcCCCCceeee
Q 020454          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-PKNSLGIFTPTWFTSA  219 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~  219 (326)
                      ....      .....+...........+.+.++++++++-+.++.+..+|...+......... ...............+
T Consensus        97 ~~~~------~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi  170 (302)
T d2p4oa1          97 VKSD------GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  170 (302)
T ss_dssp             ECTT------SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             cccc------cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence            5322      11223334445567889999999999998888999999998876543222211 1111111111244555


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEeCCCCCCc-eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEE--
Q 020454          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF--  296 (326)
Q Consensus       220 ~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~--  296 (326)
                      .+.   ++.++++.+..+.|..++....... .............++++++|++.++...++.|..++.. ++.....  
T Consensus       171 ~~~---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~  246 (302)
T d2p4oa1         171 KRF---GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA  246 (302)
T ss_dssp             EEE---TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred             ccc---CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEec
Confidence            554   3447777888999999987754221 11111233456779999999988888888999999875 4433222  


Q ss_pred             cceecceEEEEEE---CCCCCEEEEeccC
Q 020454          297 IGKCSGSIRSIAR---HPTLPIIASCGFL  322 (326)
Q Consensus       297 ~~~~~~~v~~l~~---~p~~~~l~s~s~D  322 (326)
                      ... ....++++|   .+|++.|+.++..
T Consensus       247 ~~~-~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         247 EQG-VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCC-CCCceEEEEcCCCCCCCEEEEECCC
Confidence            222 345789999   6788877665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=9.9e-07  Score=69.20  Aligned_cols=229  Identities=9%  Similarity=0.082  Sum_probs=139.8

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEE-ecCCcEEEEEcc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIE  141 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~-~~~g~v~i~~~~  141 (326)
                      ++++++++-..++.|++||. +++++..+.......  .......++.....       ....+++. +.++.|..++..
T Consensus        32 ~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~--~~~~~p~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          32 AQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRD--SQLLYPNRVAVVRN-------SGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             TTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSST--TCBSSEEEEEEETT-------TTEEEEEECGGGCEEEEECTT
T ss_pred             CCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCc--cccccccccccccc-------ccccceeccCCcccccccccc
Confidence            45557777778899999997 577766664321110  11112222332221       12233332 233444444322


Q ss_pred             ccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEE
Q 020454          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (326)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (326)
                               ...+..+..........+++.++++++++....+.+.+++.. ++.+.......       .......+++
T Consensus       102 ---------g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~-------~~~~~~~i~~  164 (279)
T d1q7fa_         102 ---------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------HLEFPNGVVV  164 (279)
T ss_dssp             ---------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------TCSSEEEEEE
T ss_pred             ---------ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccc-------cccccceeee
Confidence                     123444444445567889999999988888888889888864 44444432211       1134567777


Q ss_pred             eecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEee--cCCceEEEEecCCCCeEEEEcC-CCcEEEEECCCCeEEEEEcc
Q 020454          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       222 ~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~  298 (326)
                      .+  +++++++....+.|++||...  +.+.++..  .......|+++++|+.+++-.. ++.|.+|+. +|+.+..+..
T Consensus       165 d~--~g~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~  239 (279)
T d1q7fa_         165 ND--KQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES  239 (279)
T ss_dssp             CS--SSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred             cc--ceeEEeeeccccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC
Confidence            65  566888888899999999873  34555532  3345788999999987766544 456999984 6888777653


Q ss_pred             ee-cceEEEEEECCCCCEEEEeccCcc
Q 020454          299 KC-SGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       299 ~~-~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      .. ......|++.|++.++++. .++.
T Consensus       240 ~~~~~~p~~vav~~dG~l~V~~-~n~~  265 (279)
T d1q7fa_         240 KVKHAQCFDVALMDDGSVVLAS-KDYR  265 (279)
T ss_dssp             SSCCSCEEEEEEETTTEEEEEE-TTTE
T ss_pred             CCCCCCEeEEEEeCCCcEEEEe-CCCe
Confidence            21 3357899999999766654 4543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.01  E-value=9.9e-07  Score=72.08  Aligned_cols=276  Identities=9%  Similarity=-0.018  Sum_probs=141.4

Q ss_pred             eeeeeecC--cccEEEEEecCCcCCCcceeeeccCC-CCCceEEEEEeeeCCCCCeEEEEecCCcEEEEecccc-ceeee
Q 020454           15 LRALTFDS--LGLIKVIEARGEHGGVPKVVERWGDP-HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVA   90 (326)
Q Consensus        15 ~~l~~~~~--~G~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-~~~~~   90 (326)
                      ..|+.|+.  .|.|.++..+.. .+...+.....-+ .....  .+.+  ++++++|++.. .+.+..|.+... .....
T Consensus         3 ~~l~vGtyt~~~~i~~~~fd~~-~~~l~~~~~~~~~~~~~~s--~la~--s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~   76 (365)
T d1jofa_           3 HHLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIPQDEPIS--WMTF--DHERKNIYGAA-MKKWSSFAVKSPTEIVHE   76 (365)
T ss_dssp             EEEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECCTTCCCS--EEEE--CTTSSEEEEEE-BTEEEEEEEEETTEEEEE
T ss_pred             eEEEEEeecCCCCEEEEEEcCC-CCeEEEeeeeeccCCCCCC--EEEE--cCCCCEEEEEe-CCcEEEEEEeCCCCeEEE
Confidence            45788854  567888777765 3433333221111 11112  2333  34455676664 467888877532 22222


Q ss_pred             ecccCCCCCCCCCCCeeeeecccccccccCCCCceE-EEEe--cCCcEEEEEcccccc--------ccccccceEEEEEc
Q 020454           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCT--TKGKASMRSIEVTKV--------SAESSCSTVKSWNV  159 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l-~~~~--~~g~v~i~~~~~~~~--------~~~~~~~~~~~~~~  159 (326)
                      ....      .+ .....+...+        +...+ ++..  ..+.+..+.+.....        ..+...+.......
T Consensus        77 ~~~~------~~-~~p~~v~~~~--------~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (365)
T d1jofa_          77 ASHP------IG-GHPRANDADT--------NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY  141 (365)
T ss_dssp             EEEE------CC-SSGGGGCTTS--------CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC
T ss_pred             eeec------CC-CCcEEEEECC--------CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCccc
Confidence            1110      11 2223344322        22322 2222  245555544332110        00111122222222


Q ss_pred             cCCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCceeee---eecCCCCCCCCcCCCCceeeeEEeecCCCcEE-EEEe
Q 020454          160 CASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGT  234 (326)
Q Consensus       160 ~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l-~~~~  234 (326)
                      .....+.++.++|++++++++.. ...|.+|+......+.   ......       .......++|+|  +++++ ++..
T Consensus       142 q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~-------~g~gPr~i~f~p--dg~~~yv~~e  212 (365)
T d1jofa_         142 QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAMHP--TGNYLYALME  212 (365)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEECT--TSSEEEEEET
T ss_pred             CCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC-------CCCceEEEEECC--CCceEEEecc
Confidence            33445889999999998877654 4578888765432211   111111       113467889998  44455 5666


Q ss_pred             CCCeEEEEeCCCCCCc-eeEEe---e--------------cCCceEEEEecCCCCeEEEEcC------CCcEEEEECCCC
Q 020454          235 NDHQVRLYDTSAQRRP-VMSFD---F--------------RETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTG  290 (326)
Q Consensus       235 ~dg~v~iwd~~~~~~~-~~~~~---~--------------~~~~i~~v~~s~~~~~l~~g~~------dg~v~iwd~~~~  290 (326)
                      .+++|.+|+....... +....   .              .......+.++|+|++|+++..      .+.|..|++...
T Consensus       213 ~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             CCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence            7899999998754221 11111   0              1113467899999999987642      223777877643


Q ss_pred             eEEE-EE-----cceecceEEEEEECC-CCCEEEEecc
Q 020454          291 KLLG-CF-----IGKCSGSIRSIARHP-TLPIIASCGF  321 (326)
Q Consensus       291 ~~~~-~~-----~~~~~~~v~~l~~~p-~~~~l~s~s~  321 (326)
                      ..+. ..     ... ....+.++++| ++++|+.+..
T Consensus       293 g~~~~~~~~~~~~~~-G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         293 GSIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             SCEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECS
T ss_pred             CceeeEeEeeEEEcC-CCCccEEEecCCCCCEEEEEeC
Confidence            2221 11     111 23457899998 7898877753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=1.9e-06  Score=67.51  Aligned_cols=183  Identities=8%  Similarity=0.038  Sum_probs=111.7

Q ss_pred             EecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccccc
Q 020454           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (326)
Q Consensus        71 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~~~  150 (326)
                      ...++.|..++. .++....+..       .......+++...        ....+++....+.+.+++.+.        
T Consensus        89 ~~~~~~i~~~~~-~g~~~~~~~~-------~~~~~p~~~avd~--------~G~i~v~~~~~~~~~~~~~~g--------  144 (279)
T d1q7fa_          89 RSPTHQIQIYNQ-YGQFVRKFGA-------TILQHPRGVTVDN--------KGRIIVVECKVMRVIIFDQNG--------  144 (279)
T ss_dssp             CGGGCEEEEECT-TSCEEEEECT-------TTCSCEEEEEECT--------TSCEEEEETTTTEEEEECTTS--------
T ss_pred             cCCccccccccc-cccceeecCC-------Ccccccceecccc--------CCcEEEEeeccceeeEeccCC--------
Confidence            445567877776 5665555432       2223344455432        233444444455555554321        


Q ss_pred             cceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcE
Q 020454          151 CSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (326)
Q Consensus       151 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  229 (326)
                       ..+..+.. ........+++.++++++++....+.|++||.. ++.+..+....       ......++++.|  ++++
T Consensus       145 -~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g-------~~~~P~giavD~--~G~i  213 (279)
T d1q7fa_         145 -NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG-------ITNYPIGVGINS--NGEI  213 (279)
T ss_dssp             -CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT-------TSCSEEEEEECT--TCCE
T ss_pred             -ceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeecccc-------cccCCccccccc--CCeE
Confidence             12333322 233567788999999988888889999999975 45554442211       113456888877  5656


Q ss_pred             EEEEeC-CCeEEEEeCCCCCCceeEEeec--CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 020454          230 FVAGTN-DHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (326)
Q Consensus       230 l~~~~~-dg~v~iwd~~~~~~~~~~~~~~--~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~  291 (326)
                      +++-+. ++.|.+|+.. + +.+.++...  ......|++.|+|+++ +.+.++.|++|...+..
T Consensus       214 ~Vad~~~~~~v~~f~~~-G-~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         214 LIADNHNNFNLTIFTQD-G-QLISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEECSSSCEEEEECTT-S-CEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCC
T ss_pred             EEEECCCCcEEEEECCC-C-CEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeec
Confidence            666543 5579999865 4 445565433  2357889999999754 45678899999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=9.1e-07  Score=68.66  Aligned_cols=147  Identities=7%  Similarity=-0.067  Sum_probs=97.9

Q ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEE
Q 020454          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       162 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~i  241 (326)
                      ......++++++++++++-..+..+..++.............      +   ....++++.|  +++++++...++.|..
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~------~---~~p~~i~~~~--~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG------L---NDPDGVAVDN--SGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS------C---CSCCEEEECT--TCCEEEEEGGGTEEEE
T ss_pred             eeecccccccccceeEeeccccccccccccccceeeeeeecc------c---CCcceeeecC--CCCEeeeccccccccc
Confidence            346789999999998887666777777776543322211110      1   2345778876  5568888888899999


Q ss_pred             EeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc-ceecceEEEEEECCCCCEEEEe
Q 020454          242 YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       242 wd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      +|.... . ...+. ..-.....|+++++|+++++-...+.|..++...... ..+. .. -.....|++++++.++++-
T Consensus       166 ~d~~~~-~-~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~-~~~P~~i~~d~~g~l~vad  241 (260)
T d1rwia_         166 LEAESN-N-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTG-LNTPLAVAVDSDRTVYVAD  241 (260)
T ss_dssp             ECTTTC-C-EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCS-CCCEEEEEECTTCCEEEEE
T ss_pred             cccccc-e-eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCC-CCCeEEEEEeCCCCEEEEE
Confidence            998754 2 22332 2334568899999998888888888899888754432 2222 22 3456799999999877775


Q ss_pred             ccCc
Q 020454          320 GFLE  323 (326)
Q Consensus       320 s~D~  323 (326)
                      ..++
T Consensus       242 ~~~~  245 (260)
T d1rwia_         242 RGND  245 (260)
T ss_dssp             GGGT
T ss_pred             CCCC
Confidence            5443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=3.2e-07  Score=77.74  Aligned_cols=89  Identities=8%  Similarity=0.001  Sum_probs=50.6

Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeE-EEEcCCC----cEEEE--ECCCCeEEEEE---
Q 020454          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSG----DLASV--DIRTGKLLGCF---  296 (326)
Q Consensus       227 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~g~~dg----~v~iw--d~~~~~~~~~~---  296 (326)
                      +..++....||..+||...........+..+...|..+ ++++++.+ ++++.++    .-+||  ++..+.....+   
T Consensus       332 ~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~  410 (470)
T d2bgra1         332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCE  410 (470)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTT
T ss_pred             CcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEeccc
Confidence            33456677777666664332223344555555667775 44555554 3554432    22344  44444333333   


Q ss_pred             -cceecceEEEEEECCCCCEEE
Q 020454          297 -IGKCSGSIRSIARHPTLPIIA  317 (326)
Q Consensus       297 -~~~~~~~v~~l~~~p~~~~l~  317 (326)
                       ..| ...+.+++|+|++++++
T Consensus       411 ~~~~-~~~~~s~~fSpdgky~~  431 (470)
T d2bgra1         411 LNPE-RCQYYSVSFSKEAKYYQ  431 (470)
T ss_dssp             TSTT-TBCBEEEEECTTSSEEE
T ss_pred             ccCC-CCCEEEEEECCCCCEEE
Confidence             345 77899999999999866

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.77  E-value=8.3e-06  Score=64.92  Aligned_cols=219  Identities=11%  Similarity=0.017  Sum_probs=125.2

Q ss_pred             CCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccccccc--ccc
Q 020454           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--SSC  151 (326)
Q Consensus        74 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~~~~~--~~~  151 (326)
                      +|+|..||..+++........ .   ....+...++.+.+        +++.++++...+.+...+.+.......  ..+
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~-~---~~~~g~P~Gl~~~~--------dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~  112 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPE-V---NGYGGIPAGCQCDR--------DANQLFVADMRLGLLVVQTDGTFEEIAKKDSE  112 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCE-E---TTEECCEEEEEECS--------SSSEEEEEETTTEEEEEETTSCEEECCSBCTT
T ss_pred             CCEEEEEECCCCcEEEEECCc-c---ccCCCcceeEEEeC--------CCCEEEEEECCCeEEEEeCCCcEEEEEecccc
Confidence            467888888766542222110 0   01112345666544        455677777667777776543221000  000


Q ss_pred             ceEEEEEccCCCceEEEEEcCCCCEEEEecC---------------CCeEEEEECCCceeeeeecCCCCCCCCcCCCCce
Q 020454          152 STVKSWNVCASGTIAFSKVDISEKFSLFGGK---------------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF  216 (326)
Q Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  216 (326)
                      +.       .-...+.+.++++|++.++-..               .+.|..++.. ++.......       +   ...
T Consensus       113 g~-------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~-------~---~~p  174 (314)
T d1pjxa_         113 GR-------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-------F---QFP  174 (314)
T ss_dssp             SC-------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-------E---SSE
T ss_pred             cc-------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCC-------c---cee
Confidence            00       0113567889999988776321               1233333322 221111111       0   124


Q ss_pred             eeeEEeecCCC---cEEEEEeCCCeEEEEeCCCCCCceeE---E---ee-cCCceEEEEecCCCCeEEEEcCCCcEEEEE
Q 020454          217 TSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMS---F---DF-RETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (326)
Q Consensus       217 ~~~~~~p~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~---~---~~-~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd  286 (326)
                      +.++|+|..++   .++++-+..+.|..||+..... +..   +   .. .......+++..+|+..++....+.|.+||
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccc-cceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            57889885433   2555667889999998764322 221   1   11 122356789999999888877889999999


Q ss_pred             CCCCeEEEEEcceecceEEEEEECCCCC-EEEEeccCcc
Q 020454          287 IRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGFLEA  324 (326)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~s~D~~  324 (326)
                      .+.++.+..+..+ ....++++|.|+++ +.++.+..+.
T Consensus       254 p~~g~~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~~g~  291 (314)
T d1pjxa_         254 PDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             TTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCEEEEEEECC-CCCEEEEEEeCCCCEEEEEECCCCc
Confidence            9888877777655 56788999999987 4455555553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.74  E-value=2.6e-05  Score=62.12  Aligned_cols=226  Identities=12%  Similarity=0.065  Sum_probs=129.4

Q ss_pred             CCCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC---CcEEEE
Q 020454           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMR  138 (326)
Q Consensus        62 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~---g~v~i~  138 (326)
                      +.++++.++-..++.|..|+...++....+..        ......++++.+         ++.++++...   ....++
T Consensus        48 D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~--------~~~~p~gla~~~---------dG~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          48 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVS--------HKANPAAIKIHK---------DGRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEEEEEEC--------SSSSEEEEEECT---------TSCEEEEECTTSSSCCEEE
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCeEEEEEeC--------CCCCeeEEEECC---------CCCEEEEecCCCccceeEE
Confidence            45566777777889999998866654443331        123456666533         3344444321   233344


Q ss_pred             EccccccccccccceEEEEE-ccCCCceEEEEEcCCCCEEEEecCC------CeEEEEECCCceeeeeecCCCCCCCCcC
Q 020454          139 SIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  211 (326)
                      .+.....      ....... .........+.+.++|++.++....      +.+..++............       + 
T Consensus       111 ~~~~~~~------~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~-------~-  176 (319)
T d2dg1a1         111 AATENGD------NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------I-  176 (319)
T ss_dssp             EECTTSC------SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-------E-
T ss_pred             EEcCCCc------eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec-------c-
Confidence            4332211      0111111 1223457789999999877663321      2244444332221111111       0 


Q ss_pred             CCCceeeeEEeecCCCc-EEEEEeCCCeEEEEeCCCCCCceeEEe-------ecCCceEEEEecCCCCeEEEEcCCCcEE
Q 020454          212 TPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFD-------FRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (326)
Q Consensus       212 ~~~~v~~~~~~p~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~i~~v~~s~~~~~l~~g~~dg~v~  283 (326)
                        ...+.++|+|  +++ ++++-+..+.|..||+...........       ........+++.++|++.++....+.|.
T Consensus       177 --~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~  252 (319)
T d2dg1a1         177 --SVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVL  252 (319)
T ss_dssp             --SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             --ceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEE
Confidence              2246789988  444 456667789999999764322221111       1112356789999999888888899999


Q ss_pred             EEECCCCeEEEEEcce-----ecceEEEEEECCCCCEEEEeccCc
Q 020454          284 SVDIRTGKLLGCFIGK-----CSGSIRSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~-----~~~~v~~l~~~p~~~~l~s~s~D~  323 (326)
                      +||. .|+.+.++...     ....+++++|.|+...+++...|.
T Consensus       253 ~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  296 (319)
T d2dg1a1         253 VFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  296 (319)
T ss_dssp             EECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCC
Confidence            9995 68888877522     033578999999887776665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.69  E-value=2.3e-05  Score=61.67  Aligned_cols=216  Identities=8%  Similarity=-0.050  Sum_probs=132.0

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccccc
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~~  144 (326)
                      +.+..+--..+.|.-||..+++. ..+..         ...+.++....         ++.++.++.+ .+..+|.....
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~-~~~~~---------~~~~~~i~~~~---------dg~l~va~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRK-TVHAL---------PFMGSALAKIS---------DSKQLIASDD-GLFLRDTATGV   89 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEE-EEEEC---------SSCEEEEEEEE---------TTEEEEEETT-EEEEEETTTCC
T ss_pred             CEEEEEECCCCEEEEEECCCCeE-EEEEC---------CCCcEEEEEec---------CCCEEEEEeC-ccEEeecccce
Confidence            33555666778899999877765 33332         13455566433         3456666665 47777765432


Q ss_pred             cccccccceEEEEEccC---CCceEEEEEcCCCCEEEEecC----CCeEEEEECCCceeeeeecCCCCCCCCcCCCCcee
Q 020454          145 VSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (326)
Q Consensus       145 ~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (326)
                              ...+.+...   ...++.+.+.|+|++.++...    .+.-.+|.+..++........          ...+
T Consensus        90 --------~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----------~~~N  151 (295)
T d2ghsa1          90 --------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----------SIPN  151 (295)
T ss_dssp             --------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----------SSEE
T ss_pred             --------eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----------CCcc
Confidence                    112222221   224788999999987665432    234456666555543332221          1245


Q ss_pred             eeEEeecCCCcEEEEEeCCCeEEEEeCCCCC-----Ccee--EEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 020454          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----RPVM--SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~--~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~  290 (326)
                      .+.|++. ...++++-+..+.|..|++....     +...  .+.........+++..+|++.++.-..+.|..||. .|
T Consensus       152 g~~~s~d-~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G  229 (295)
T d2ghsa1         152 SICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG  229 (295)
T ss_dssp             EEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC
T ss_pred             eeeecCC-CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC
Confidence            7788874 33366777888999999864221     1111  11123456788999999987777777889999995 68


Q ss_pred             eEEEEEcceecceEEEEEEC-CCCCEE-EEecc
Q 020454          291 KLLGCFIGKCSGSIRSIARH-PTLPII-ASCGF  321 (326)
Q Consensus       291 ~~~~~~~~~~~~~v~~l~~~-p~~~~l-~s~s~  321 (326)
                      +.+..+.-. ...+++++|- |+.+.| +|...
T Consensus       230 ~~~~~i~lP-~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         230 NHIARYEVP-GKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             CEEEEEECS-CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cEeeEecCC-CCceEEEEEeCCCCCEEEEEECC
Confidence            888888765 5679999996 665544 44433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=2.1e-05  Score=60.65  Aligned_cols=112  Identities=13%  Similarity=-0.009  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      .....++++++++++++...++.|..+|............         .......+++.+  +++++++....+.|..+
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~---------~~~~p~gi~~d~--~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---------DITAPWGIAVDE--AGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---------SCCSEEEEEECT--TCCEEEEETTTTEEEEE
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeeecc---------ccCCCccceeee--eeeeeeeecCCCEEEEE
Confidence            3456889999999888888888999999875443222111         113356788876  56688888888899989


Q ss_pred             eCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEEcCCCcEEEEEC
Q 020454          243 DTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (326)
Q Consensus       243 d~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~  287 (326)
                      +.....  ...+. ..-.....|+++++|+.+++-..+++|+.++.
T Consensus       209 ~~~~~~--~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         209 LAGSTT--STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CTTCSC--CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eCCCCe--EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            876442  22221 12245688999999987777666676765554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.49  E-value=3.6e-05  Score=62.52  Aligned_cols=103  Identities=11%  Similarity=-0.025  Sum_probs=67.4

Q ss_pred             ceeeeEEeecCCCcEEEEEe-CCCeEEEEeCCCCCCce--eEEe--ecCCceEEEEecCCCCeEEE-EcCCCcEEEEECC
Q 020454          215 WFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPV--MSFD--FRETPIKAVAEEPDSFNIYI-GNGSGDLASVDIR  288 (326)
Q Consensus       215 ~v~~~~~~p~~~~~~l~~~~-~dg~v~iwd~~~~~~~~--~~~~--~~~~~i~~v~~s~~~~~l~~-g~~dg~v~iwd~~  288 (326)
                      .+.++.|+|  ++++++++. ....|.+|+........  ....  ......+.++|+|+++++++ .-.+++|.+|++.
T Consensus       146 h~h~v~~sP--dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECC--CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            477899998  566666664 45688888865332211  1121  12356788999999998874 4467899999987


Q ss_pred             CCeEE--EE---Ec--------------ceecceEEEEEECCCCCEEEEec
Q 020454          289 TGKLL--GC---FI--------------GKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       289 ~~~~~--~~---~~--------------~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      .++..  ..   ..              .+ ......+.++|++++|+++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKG-LYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSB-SEEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccc-cCCccceEECCCCCEEEEEc
Confidence            65322  11   11              01 22456789999999988764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=0.00015  Score=55.65  Aligned_cols=145  Identities=8%  Similarity=0.005  Sum_probs=80.4

Q ss_pred             CCCceEEEEEcCCCCEEEEecC-CCeEEE--EECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454          161 ASGTIAFSKVDISEKFSLFGGK-GVEVNV--WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (326)
Q Consensus       161 ~~~~v~~~~~~~~~~~l~sg~~-d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg  237 (326)
                      .........++|+++.++.... ++...+  +..............          .......+++. ....+++...++
T Consensus        81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~g  149 (269)
T d2hqsa1          81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------SNNTEPTWFPD-SQNLAFTSDQAG  149 (269)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS----------SCEEEEEECTT-SSEEEEEECTTS
T ss_pred             eecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecc----------ccccccccccc-cccceecccccC
Confidence            3567788899999987765443 333333  222222222211110          11222334432 233555555566


Q ss_pred             e--EEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC-CCcEEE--EECCCCeEEEEEcceecceEEEEEECCC
Q 020454          238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLAS--VDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       238 ~--v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~-dg~v~i--wd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      .  |.+.++...  ................|+|+++.++..+. .+...+  .+...+..  ....+ ........|+||
T Consensus       150 ~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~-~~~~~~p~~SPD  224 (269)
T d2hqsa1         150 RPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSS-TFLDETPSLAPN  224 (269)
T ss_dssp             SCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCC-SSSCEEEEECTT
T ss_pred             CceEeeeecccc--cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeec-CccccceEECCC
Confidence            4  455555544  23444455667778899999999885544 444444  45444433  33333 556778899999


Q ss_pred             CCEEEEecc
Q 020454          313 LPIIASCGF  321 (326)
Q Consensus       313 ~~~l~s~s~  321 (326)
                      |+.|+-.+.
T Consensus       225 G~~i~f~s~  233 (269)
T d2hqsa1         225 GTMVIYSSS  233 (269)
T ss_dssp             SSEEEEEEE
T ss_pred             CCEEEEEEc
Confidence            998876554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.24  E-value=0.00061  Score=53.78  Aligned_cols=115  Identities=11%  Similarity=0.090  Sum_probs=75.9

Q ss_pred             EEEEEcCCCC-----EEEEecCCCeEEEEECCCceeeee---ecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC
Q 020454          166 AFSKVDISEK-----FSLFGGKGVEVNVWDLDKCEKIWT---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (326)
Q Consensus       166 ~~~~~~~~~~-----~l~sg~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg  237 (326)
                      +.++++|+++     ++++-+..+.|..||+.....+..   .......     .....-.+++..  +|+++++....+
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~-----~~~~pdGiavD~--~GnlyVa~~~~g  247 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-----HEGGADGMDFDE--DNNLLVANWGSS  247 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-----SSCEEEEEEEBT--TCCEEEEEETTT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc-----ccccceeeEEec--CCcEEEEEcCCC
Confidence            4677877653     445557788899998764322111   0010000     011234667764  677888888889


Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECC
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIR  288 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~  288 (326)
                      .|.+||...+ ..+..+.......++++|.|+++.|+ +.+.+|.|..+++.
T Consensus       248 ~I~~~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         248 HIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEeCCCC-EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9999998865 45566666667789999999987554 66677888888875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.19  E-value=0.00021  Score=56.22  Aligned_cols=187  Identities=13%  Similarity=0.032  Sum_probs=103.6

Q ss_pred             eCCCCCeEEEEecCCcEEEEecccccee-eeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEE
Q 020454           61 DSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (326)
Q Consensus        61 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~  139 (326)
                      ...+++++++...++.+..++....... ..+...      .......++...+        ++..+++-..++.+..++
T Consensus        75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~n~i~~~~--------~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL------PDAIFLNGITPLS--------DTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC------TTCSCEEEEEESS--------SSEEEEEETTTTEEEEEE
T ss_pred             EcCCCCeEEEecCCceEEEEEecccccceeecccc------CCccccceeEEcc--------CCCEEeeccccccceeee
Confidence            3456668888888888888877543221 111111      2224455666433        444555556667666665


Q ss_pred             ccccccccccccceEEEEEcc----------CCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          140 IEVTKVSAESSCSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      .....         ..++...          .......+.++. +.++++.+..+.|..+++............      
T Consensus       141 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~------  204 (302)
T d2p4oa1         141 VVQPS---------GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF------  204 (302)
T ss_dssp             TTTTE---------EEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEE------
T ss_pred             ccCCc---------ceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccc------
Confidence            44321         2222111          012355666653 345566677888888887654322111000      


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEe---cCCCCeEEEEcCCC
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE---EPDSFNIYIGNGSG  280 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~---s~~~~~l~~g~~dg  280 (326)
                       .......++++.+  +++++++...++.|..++.......+......-...++++|   ++|++.|++++..|
T Consensus       205 -~~~~~pdgia~d~--dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         205 -VEQTNIDDFAFDV--EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             -EESCCCSSEEEBT--TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -cCCCCCcceEECC--CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence             0001234678876  67688888889999999877431112222233346789999   67888888765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=0.00092  Score=51.07  Aligned_cols=213  Identities=12%  Similarity=-0.022  Sum_probs=109.0

Q ss_pred             EEeeeCCCCCeEEEEecCC---cEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cC
Q 020454           57 ASIDDSQNDPLLAVARKNG---LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TK  132 (326)
Q Consensus        57 ~~~~~~~~~~~l~~g~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~  132 (326)
                      .+..++++++.||......   .+.+.+...+.......         ..+......+.+        ++..++... ..
T Consensus        42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~sp--------dg~~i~~~~~~~  104 (269)
T d2hqsa1          42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------FPRHNGAPAFSP--------DGSKLAFALSKT  104 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC---------CSSCEEEEEECT--------TSSEEEEEECTT
T ss_pred             eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee---------eecccccceecC--------CCCeeeEeeecC
Confidence            3566788888888765543   35555655444322222         113334344332        334444333 33


Q ss_pred             CcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE-EEEecCCCe--EEEEECCCceeeeeecCCCCCCCC
Q 020454          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       133 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      +...++......      .  ................++++++. +++...++.  |.+.++......... .       
T Consensus       105 ~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~-------  168 (269)
T d2hqsa1         105 GSLNLYVMDLAS------G--QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-W-------  168 (269)
T ss_dssp             SSCEEEEEETTT------C--CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-C-------
T ss_pred             Cccceeeccccc------c--cceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee-c-------
Confidence            333333322111      0  11111112223344456666643 444445554  555555544322211 1       


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEe-CCCeEEEE--eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcC---CCcEE
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLA  283 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~-~dg~v~iw--d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~---dg~v~  283 (326)
                        .........|+|  +++.++..+ ..+...+|  |....  . ..............|+|||+.|+-.+.   ...++
T Consensus       169 --~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         169 --EGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATG--G-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             --SSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTC--C-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             --cccccccccccc--ccceeEEEeecCCceeeeEeecccc--c-ceEeecCccccceEECCCCCEEEEEEcCCCCcEEE
Confidence              112345567877  455555544 44444444  44433  2 334345566778899999999874333   34688


Q ss_pred             EEECCCCeEEEEEcceecceEEEEEECC
Q 020454          284 SVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (326)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~l~~~p  311 (326)
                      ++++..+.. .++... .+.+...+|+|
T Consensus       242 ~~~~dg~~~-~~lt~~-~g~~~~p~WSP  267 (269)
T d2hqsa1         242 LVSTDGRFK-ARLPAT-DGQVKFPAWSP  267 (269)
T ss_dssp             EEETTSCCE-EECCCS-SSEEEEEEECC
T ss_pred             EEECCCCCE-EEEeCC-CCcEEeEEeCC
Confidence            999986654 445554 77888999998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.5e-05  Score=67.04  Aligned_cols=143  Identities=10%  Similarity=0.011  Sum_probs=91.6

Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEE---------eCCCeE
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---------TNDHQV  239 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~---------~~dg~v  239 (326)
                      .|.+++.++.. ..++.|.+||+.+++....+.......      ..+....|+|  ++++++..         +..+.+
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~Sp--D~~~vl~~~~~~~~~r~s~~~~~   93 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIES------LRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY   93 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTT------TTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccc------cccceeEECC--CCCeEEEEEcccceeEeeccccE
Confidence            47777776643 567889999998876543333322111      1244567777  56666655         335788


Q ss_pred             EEEeCCCCCCceeEEe---ecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceE------------
Q 020454          240 RLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI------------  304 (326)
Q Consensus       240 ~iwd~~~~~~~~~~~~---~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v------------  304 (326)
                      .+||+.++ . ...+.   .....+....|||||+.||-.. ++.|++.+..++...+.......+.|            
T Consensus        94 ~i~d~~~~-~-~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee  170 (465)
T d1xfda1          94 VLSKIPHG-D-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (465)
T ss_dssp             EEEESSSC-C-CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             EEEEccCC-c-eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhh
Confidence            99999876 3 23332   2334566678999999998644 56899998877665543321102111            


Q ss_pred             -----EEEEECCCCCEEEEeccCc
Q 020454          305 -----RSIARHPTLPIIASCGFLE  323 (326)
Q Consensus       305 -----~~l~~~p~~~~l~s~s~D~  323 (326)
                           ..+.|+|||++||....|.
T Consensus       171 ~~~~~~a~~WSPDgk~iaf~~~D~  194 (465)
T d1xfda1         171 ILKTHIAHWWSPDGTRLAYAAIND  194 (465)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             hccccceEEECCCCCeEEEEEecc
Confidence                 4678999999999887654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=0.00028  Score=59.06  Aligned_cols=222  Identities=9%  Similarity=-0.012  Sum_probs=115.3

Q ss_pred             EEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe---------cCCcEEEEEc
Q 020454           70 VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------TKGKASMRSI  140 (326)
Q Consensus        70 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~---------~~g~v~i~~~  140 (326)
                      .-..+|.|.+||+.+++....+....     ...-.+....+.+        +..+++...         ..+.+.++|+
T Consensus        32 ~~~~~g~i~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~Sp--------D~~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          32 YREQKGTVRLWNVETNTSTVLIEGKK-----IESLRAIRYEISP--------DREYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCCSSSCEEEBCGGGCCCEEEECTTT-----TTTTTCSEEEECT--------TSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             EEeCCCcEEEEECCCCCEEEEEcCcc-----ccccccceeEECC--------CCCeEEEEEcccceeEeeccccEEEEEc
Confidence            34567889999998776533333211     1111233233322        445655543         3456677776


Q ss_pred             cccccccccccceEEEEEc-cCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCc----
Q 020454          141 EVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW----  215 (326)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----  215 (326)
                      .......        +-.. .....+....|+|+|+.||-.. ++.|.+.+...+..+............-..+.|    
T Consensus        99 ~~~~~~~--------l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyee  169 (465)
T d1xfda1          99 PHGDPQS--------LDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (465)
T ss_dssp             SSCCCEE--------CCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             cCCceee--------ccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhh
Confidence            6433110        0000 1123455678999998887754 678888888776654443322211100001111    


Q ss_pred             -----eeeeEEeecCCCcEEEEEeC-CCe---------------------------------EEEEeCCCCCCceeEE--
Q 020454          216 -----FTSAAFLSIDDHRKFVAGTN-DHQ---------------------------------VRLYDTSAQRRPVMSF--  254 (326)
Q Consensus       216 -----v~~~~~~p~~~~~~l~~~~~-dg~---------------------------------v~iwd~~~~~~~~~~~--  254 (326)
                           -.++.|+|  +|+.||.... +..                                 +.++|+..........  
T Consensus       170 e~~~~~~a~~WSP--Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~  247 (465)
T d1xfda1         170 EILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP  247 (465)
T ss_dssp             TTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred             hhccccceEEECC--CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEecc
Confidence                 13567888  6667776542 222                                 3333433221111000  


Q ss_pred             ---eecCCceEEEEecCCCCeEEEEcC-C---CcEEEEECCCCeEEEEEcceecceE----EEEEECCCCCE
Q 020454          255 ---DFRETPIKAVAEEPDSFNIYIGNG-S---GDLASVDIRTGKLLGCFIGKCSGSI----RSIARHPTLPI  315 (326)
Q Consensus       255 ---~~~~~~i~~v~~s~~~~~l~~g~~-d---g~v~iwd~~~~~~~~~~~~~~~~~v----~~l~~~p~~~~  315 (326)
                         ...+..+..+.|+|+++.++.-.. +   ..+.++|..+++....+.....+.|    ....|.|+++.
T Consensus       248 ~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             CcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCe
Confidence               011224677899999886664322 2   2588899999987655543212222    24578888874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.02  E-value=0.0015  Score=49.98  Aligned_cols=225  Identities=14%  Similarity=0.089  Sum_probs=128.5

Q ss_pred             CCCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEccc
Q 020454           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (326)
Q Consensus        63 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~  142 (326)
                      +..+.||.-+ ..++++||+++.+.++.+...         .+|.-..|.+          ...+.--.+..|+-|+++.
T Consensus        72 P~~~IiALra-g~~LQiFnletK~klks~~~~---------e~VvfWkWis----------~~~L~lVT~taVYHW~~~g  131 (327)
T d1utca2          72 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWIS----------LNTVALVTDNAVYHWSMEG  131 (327)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEEESS----------SSEEEEECSSEEEEEESSS
T ss_pred             CCCcEEEEec-CCeEEEEehhHhhhhceEEcC---------CCcEEEEecC----------CCEEEEEcCCceEEEcccC
Confidence            3444555544 678999999988877776642         3455455533          3344444566789999853


Q ss_pred             cccccccccceEEEEEccC---CCceEEEEEcCCCCEEEEec---C----CCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          143 TKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG---K----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      .       ..+.++++...   ...|.....+++.++++..|   .    .|.+.+|..+.... ..+.+|......++.
T Consensus       132 ~-------s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~  203 (327)
T d1utca2         132 E-------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKM  203 (327)
T ss_dssp             S-------CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECC
T ss_pred             C-------CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceeeeeEEEEc
Confidence            2       23677777543   35688888898888876533   2    36688898875431 112222111000000


Q ss_pred             C---CceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCC---Cce--eEEe--e----cCCceEEEEecCCCCeEEEEcC
Q 020454          213 P---TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV--MSFD--F----RETPIKAVAEEPDSFNIYIGNG  278 (326)
Q Consensus       213 ~---~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~---~~~--~~~~--~----~~~~i~~v~~s~~~~~l~~g~~  278 (326)
                      +   ....=++|.-.        +...+++++.++....   .+.  +..+  .    ...--.++..++.-..++.-+.
T Consensus       204 ~g~~~~~~lf~fa~r--------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK  275 (327)
T d1utca2         204 EGNAEESTLFCFAVR--------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  275 (327)
T ss_dssp             TTCSSCEEEEEEEEE--------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred             CCCCCCceEEEEEEC--------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec
Confidence            0   01111112110        1234689999876421   211  1111  1    1223455688888888999999


Q ss_pred             CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      -|.+++||+.++.+++.-+-- ..+|-.-+-+.+..-++....+|.
T Consensus       276 ~G~i~lyDleTgt~i~~nRIs-~~~iF~~a~~~~~~Gi~~VNr~Gq  320 (327)
T d1utca2         276 YGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQ  320 (327)
T ss_dssp             TSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTSE
T ss_pred             CcEEEEEEcccccEEEEeecC-CCceEEeccCCCCceEEEECCCCe
Confidence            999999999999998766543 556654444444334444445543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.90  E-value=0.0011  Score=56.91  Aligned_cols=58  Identities=17%  Similarity=0.181  Sum_probs=38.9

Q ss_pred             eEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       238 ~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      .+.-||+.++ +.+.++..... ...=..+-.+.+|++|+.||.++.||.++|+.+.+++
T Consensus       458 ~l~AiD~~tG-k~~W~~~~~~p-~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         458 RLLAWDPVAQ-KAAWSVEHVSP-WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEETTTT-EEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEeCCCCC-ceEeeecCCCC-CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            4666666665 33444443321 1111223357789999999999999999999998877

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.85  E-value=0.001  Score=57.06  Aligned_cols=78  Identities=15%  Similarity=0.046  Sum_probs=47.7

Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEEE--EEECCCCC
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--IARHPTLP  314 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~--l~~~p~~~  314 (326)
                      |.+.-+|+.++ +.+.+.......... .++-.+..+++|+.||.++.+|.++|+.+.+++-  ...+.+  +.|..+|+
T Consensus       444 G~l~AiD~~TG-~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l--~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTG-KAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM--PSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTC-CEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCC-ceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC--CCCceecceEEEECCE
Confidence            45777777776 445554433221111 1222466888999999999999999999988763  222222  44444664


Q ss_pred             -EEEE
Q 020454          315 -IIAS  318 (326)
Q Consensus       315 -~l~s  318 (326)
                       ||+.
T Consensus       520 qYi~v  524 (571)
T d2ad6a1         520 QYIGS  524 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             5544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.78  E-value=0.0049  Score=48.48  Aligned_cols=181  Identities=9%  Similarity=-0.053  Sum_probs=99.4

Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecC----CCeEEEEECCCceeee
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIW  198 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----d~~i~iwd~~~~~~~~  198 (326)
                      ++.+++-...+.|+.++.+..         .+..+..........++++++|+++++...    .+.+...+........
T Consensus        51 G~Ly~~D~~~g~I~ri~p~g~---------~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          51 GQLFLLDVFEGNIFKINPETK---------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             SCEEEEETTTCEEEEECTTTC---------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             CCEEEEECCCCEEEEEECCCC---------eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence            344555556676666654322         222233334456789999999998876533    2345555555444333


Q ss_pred             eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC------CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCe
Q 020454          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN  272 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~  272 (326)
                      ......       .......+.+.|  +|++.++...      .+.+..++....  .+..+...-...+.++|+|+++.
T Consensus       122 ~~~~~~-------~~~~~nd~~~d~--~G~l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~~~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         122 IIEDLS-------TAYCIDDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKV  190 (319)
T ss_dssp             EECSSS-------SCCCEEEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSE
T ss_pred             eccCCC-------cccCCcceeEEe--ccceeecccccccccCcceeEEEecccc--eeEEEeeccceeeeeeeccccce
Confidence            222211       112356677776  5655555322      234555555432  34443333345678999999987


Q ss_pred             EE-EEcCCCcEEEEECCCC-eEEE----E---EcceecceEEEEEECCCCCEEEEeccCcc
Q 020454          273 IY-IGNGSGDLASVDIRTG-KLLG----C---FIGKCSGSIRSIARHPTLPIIASCGFLEA  324 (326)
Q Consensus       273 l~-~g~~dg~v~iwd~~~~-~~~~----~---~~~~~~~~v~~l~~~p~~~~l~s~s~D~~  324 (326)
                      |+ +-+..+.|..||+... ....    .   .... ...-..|+++++|++.++....+.
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~-~~~PdGl~vD~~G~l~Va~~~~g~  250 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGR  250 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTE
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCC-ccceeeeeEcCCCCEEEEEcCCCE
Confidence            75 5566789999998642 1111    1   1111 223567888888887666544443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.73  E-value=0.01  Score=50.66  Aligned_cols=62  Identities=8%  Similarity=0.048  Sum_probs=41.8

Q ss_pred             CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCc---EEEEEeCCCeEEEEeCCCC
Q 020454          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~---~l~~~~~dg~v~iwd~~~~  247 (326)
                      ..+...|+++++.++..+....+.+.+-.+....-.....  +++   .++..+.+|.++++|..++
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~--~g~~~~~v~~~~k~G~l~vlDr~tG  336 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV--NGKMTPLLSHIDRNGILYTLNRENG  336 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE--TTEEEEEEEEECTTSEEEEEETTTC
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeec--cCccccceeeccccceEEEEecCCC
Confidence            5688899999999999887776666543332222222211  222   4677889999999998877

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.68  E-value=0.0036  Score=53.47  Aligned_cols=60  Identities=12%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcc
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~  298 (326)
                      |.+.-||+.++ +.+.++.... +...-.+.-.+.++++|+.||.++.||.++|+.+.+++-
T Consensus       438 G~l~A~D~~tG-k~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQ-KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCC-eEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            56777888877 4455554332 222112233567888999999999999999999988873

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.53  E-value=0.014  Score=46.99  Aligned_cols=196  Identities=12%  Similarity=0.094  Sum_probs=113.3

Q ss_pred             EEEEecCCcEEEEeccccceeeeecccCCCCCCCCC-----------C------C--------e--------eeeecccc
Q 020454           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED-----------D------G--------I--------VGLHLFKR  114 (326)
Q Consensus        68 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~------~--------i--------~~l~~~~~  114 (326)
                      +.+|+..|.|+||-+.+++.+..+..+.+.+.++-.           +      .        +        ..+.+.+.
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            677899999999999998888888776555432110           0      0        0        01111100


Q ss_pred             cccccCCCCceEEE-EecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcC--CCCEEEEecCCC-------
Q 020454          115 QREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGV-------  184 (326)
Q Consensus       115 ~~~~~~~~~~~l~~-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~-------  184 (326)
                      .     .++.++++ -..++.|.+.|++..+        +.++..+.....+..++..+  +..|++..+.+.       
T Consensus        96 t-----yDGrylFVNDkan~RVAvIdl~~fk--------t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg  162 (459)
T d1fwxa2          96 K-----YDGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  162 (459)
T ss_dssp             E-----EEEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             c-----cceeEEEEEcCCCceEEEEECccee--------eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCC
Confidence            0     01223333 3345666666665543        44555565566677777654  446777766532       


Q ss_pred             -----------eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC-----------------
Q 020454          185 -----------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----------------  236 (326)
Q Consensus       185 -----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d-----------------  236 (326)
                                 .+.++|..+.+..+++.-..          ....+.++|  +|+++++.+.+                 
T Consensus       163 ~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g----------~ld~~~~s~--dGK~af~TsyNSE~g~~l~e~ta~e~D~  230 (459)
T d1fwxa2         163 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG----------NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDH  230 (459)
T ss_dssp             SSTTCGG-EEEEEEEEETTTTEEEEEEEESS----------CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             ccccchhhcceEEEEEecCCceEEEEeeeCC----------ChhccccCC--CCCEEEEEeccccCCcchhhcccccceE
Confidence                       36678888888777654221          123456666  45566665532                 


Q ss_pred             ---------------------CeEEEEeCCC--CCCceeEEeecCCceEEEEecCCCCeEEE-EcCCCcEEEEECCC
Q 020454          237 ---------------------HQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSGDLASVDIRT  289 (326)
Q Consensus       237 ---------------------g~v~iwd~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~-g~~dg~v~iwd~~~  289 (326)
                                           +.+.+-|.+.  ....+..+....+ ...+..+|||+++++ |-.+.++.++|++.
T Consensus       231 i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         231 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESS-CCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             EEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCC-CCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                                 1234555442  1122333443433 456789999999985 55689999999964

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.49  E-value=0.014  Score=50.13  Aligned_cols=59  Identities=20%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                      |.|.-||+.++ +.+.+.... .+...-.++-.|.+++.|+.||.++.+|.++|+.+.+++
T Consensus       453 G~l~A~D~~TG-~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITG-DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTC-CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCC-ceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            56777787777 444444332 122111223357788899999999999999999998886

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.31  E-value=0.038  Score=46.92  Aligned_cols=139  Identities=12%  Similarity=0.044  Sum_probs=82.5

Q ss_pred             CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCC---
Q 020454          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET---  259 (326)
Q Consensus       184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---  259 (326)
                      ..|...|+++++.++..+....+.+.+..+....-+...... ....++.++.+|.+.++|..++ +++...+....   
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG-~~i~~~~~~~~~~~  348 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWA  348 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCC-cccccccccccccc
Confidence            457777888888888877766666655443322222222211 1136777889999999998887 44433221100   


Q ss_pred             ---------------------------------ceEEEEecCCCCeEEEEcC----------------------------
Q 020454          260 ---------------------------------PIKAVAEEPDSFNIYIGNG----------------------------  278 (326)
Q Consensus       260 ---------------------------------~i~~v~~s~~~~~l~~g~~----------------------------  278 (326)
                                                       .-...+++|+...+++-..                            
T Consensus       349 ~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (560)
T d1kv9a2         349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (560)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccc
Confidence                                             0123456677666664332                            


Q ss_pred             --------CCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEeccCccC
Q 020454          279 --------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGFLEAA  325 (326)
Q Consensus       279 --------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s~D~~~  325 (326)
                              .|.+.-||+.+++.+-+++.  ..+..+-.+.-.+.+++.++.||..
T Consensus       429 ~~~p~~~~~G~l~A~D~~tGk~~W~~~~--~~~~~gg~l~TagglVF~G~~dg~l  481 (560)
T d1kv9a2         429 TDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQM  481 (560)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             cCCCCcccccceEEEeCCCCeEeeeccC--CCCCCCceeEECCCEEEEECCCCcE
Confidence                    25688899999999877652  2233222233356688888888753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.24  E-value=0.0035  Score=47.82  Aligned_cols=96  Identities=14%  Similarity=-0.013  Sum_probs=64.0

Q ss_pred             EeecCCCcEEEEEeCCCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEE-EcCCC-----cEEEEECCCCeEEE
Q 020454          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSG-----DLASVDIRTGKLLG  294 (326)
Q Consensus       221 ~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~-g~~dg-----~v~iwd~~~~~~~~  294 (326)
                      .+|.-.|+.++-.+ ++.|.++|+..+ . ...+..+...+...+|||||+.|+- ...++     .|.+++..+++...
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g-~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSG-S-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTC-C-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCC-C-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45631155666544 567888899976 3 4567677788899999999999984 33222     47888888776643


Q ss_pred             EEc------ceecceEEEEEECCCCCEEEEec
Q 020454          295 CFI------GKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       295 ~~~------~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      ...      .. .......+|+|+++.|+...
T Consensus        83 lt~~~~~~~~~-~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGR-RMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETT-EECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCc-cccccccccCCCCCEEEEEE
Confidence            211      11 23456789999999887653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.20  E-value=0.0052  Score=49.51  Aligned_cols=272  Identities=13%  Similarity=0.091  Sum_probs=148.6

Q ss_pred             eeeeeecCcccEEEEEecCCcCCCccee----------------------------------------eeccCCCCCceE
Q 020454           15 LRALTFDSLGLIKVIEARGEHGGVPKVV----------------------------------------ERWGDPHSSNCV   54 (326)
Q Consensus        15 ~~l~~~~~~G~i~vw~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~   54 (326)
                      +-+.+|+..|.|+|+-+.+. .... .+                                        ..|++..++   
T Consensus        14 y~f~SgG~sG~v~v~G~PSm-R~l~-~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP---   88 (459)
T d1fwxa2          14 YGFWSSGQSGEMRILGIPSM-RELM-RVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV---   88 (459)
T ss_dssp             EEEECCBTTCEEEEEEETTC-CEEE-EEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE---
T ss_pred             EEEeeCCccceEEEEecCCc-ceEE-EeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC---
Confidence            67889999999999998766 1111 11                                        123332222   


Q ss_pred             EEEEeee-CCCCCeEEEEe-cCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecC
Q 020454           55 LAASIDD-SQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (326)
Q Consensus        55 ~~~~~~~-~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~  132 (326)
                       ++++.+ ..++++|++.. .+++|-+.|+.+.+..+.+..       +....+.++..+...      ...+++..++.
T Consensus        89 -~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-------Pn~~~~HG~r~~~~p------~T~YV~~~~e~  154 (459)
T d1fwxa2          89 -HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWP------RSNYVFCNGED  154 (459)
T ss_dssp             -EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSS------BCSEEEEEECS
T ss_pred             -cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec-------CCCCCCceeecccCC------CeEEEEccCcc
Confidence             344433 22466666655 678999999988776554432       111334444432211      34456665543


Q ss_pred             Cc------------------EEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCC----------
Q 020454          133 GK------------------ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV----------  184 (326)
Q Consensus       133 g~------------------v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~----------  184 (326)
                      ..                  +.+.|.+.          .-..|++.-......++++++|+++++.+.+.          
T Consensus       155 ~vP~pndg~~l~d~~~y~~~~t~ID~~t----------m~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~t  224 (459)
T d1fwxa2         155 ETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMT  224 (459)
T ss_dssp             CEESSCSSSSTTCGG-EEEEEEEEETTT----------TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred             ccccCCCCccccchhhcceEEEEEecCC----------ceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcc
Confidence            21                  22233221          22345554456677899999999988765432          


Q ss_pred             -----eEEEEECCCce------------eeeeecCCC--CCCC--CcCCCCceeeeEEeecCCCcEEEE-EeCCCeEEEE
Q 020454          185 -----EVNVWDLDKCE------------KIWTAKPPP--KNSL--GIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLY  242 (326)
Q Consensus       185 -----~i~iwd~~~~~------------~~~~~~~~~--~~~~--~~~~~~~v~~~~~~p~~~~~~l~~-~~~dg~v~iw  242 (326)
                           .+.+++....+            .+..+....  ....  .+..+.....+.++|  +|+++++ +..+.++.++
T Consensus       225 a~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSP--DGKyi~VaGKLs~tVSVi  302 (459)
T d1fwxa2         225 AAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP--DKKHLCVAGKLSPTVTVL  302 (459)
T ss_dssp             CCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECT--TSSEEEEECTTSSBEEEE
T ss_pred             cccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECC--CCCEEEEeCCcCCcEEEE
Confidence                 24455543210            001111111  0011  122344566778887  5666655 4568999999


Q ss_pred             eCCCCC-------Cc----eeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCC----------eEEEEEcceec
Q 020454          243 DTSAQR-------RP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------KLLGCFIGKCS  301 (326)
Q Consensus       243 d~~~~~-------~~----~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~----------~~~~~~~~~~~  301 (326)
                      |++...       .+    +.+.+..-++... +|+.+|+-..+---|..|.-|++...          ..+.++.-| -
T Consensus       303 D~~Ki~~~~~~~~~~~~~~~~e~elglgPLht-~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~-y  380 (459)
T d1fwxa2         303 DVTRFDAVFYENADPRSAVVAEPELGLGPLHT-AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-Y  380 (459)
T ss_dssp             EGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE-EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-S
T ss_pred             EehhhhhhhcccCCccccEEeecccCcCcccc-ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc-c
Confidence            986321       11    1222233345444 89888865557778999999998532          445555443 2


Q ss_pred             ceE-----EEEEECCCCCEEEEe
Q 020454          302 GSI-----RSIARHPTLPIIASC  319 (326)
Q Consensus       302 ~~v-----~~l~~~p~~~~l~s~  319 (326)
                      .+=     .+-...|+|++|++.
T Consensus       381 ~~gh~~~~~g~t~~~dgk~l~~~  403 (459)
T d1fwxa2         381 QPGHLKTVMGETLDATNDWLVCL  403 (459)
T ss_dssp             CEEEEEETTTTSTTCCSSEEEEE
T ss_pred             CCCCCccCcCCcCCCCCCEEEEe
Confidence            111     111245888888876

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.13  E-value=0.061  Score=45.83  Aligned_cols=64  Identities=9%  Similarity=-0.049  Sum_probs=37.2

Q ss_pred             CeEEEEECCCceeeeeecCCCCCCCCcCCCCc--eeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC
Q 020454          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW--FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (326)
Q Consensus       184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~  247 (326)
                      ..|..-|+.+++..+..+....+.+.+..+..  +..+...+......++..+.++.++++|..++
T Consensus       291 ~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG  356 (582)
T d1flga_         291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             ceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence            35777788888888877766555554432221  12222221111125666778888888887766

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.01  E-value=0.044  Score=42.19  Aligned_cols=166  Identities=8%  Similarity=-0.020  Sum_probs=98.0

Q ss_pred             ecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCC
Q 020454          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (326)
Q Consensus       130 ~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  209 (326)
                      -..+.|..|+.+.         +....|..  +..+.++.+.++++++++. . ..|.++|..+++...........   
T Consensus        37 i~~~~I~r~d~~~---------g~~~~~~~--~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~---  100 (295)
T d2ghsa1          37 ILERELHELHLAS---------GRKTVHAL--PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDL---  100 (295)
T ss_dssp             GGGTEEEEEETTT---------TEEEEEEC--SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTC---
T ss_pred             CCCCEEEEEECCC---------CeEEEEEC--CCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeEEeeeecCC---
Confidence            3556666666443         24556665  4567889998888877653 4 46899999988754433221111   


Q ss_pred             cCCCCceeeeEEeecCCCcEEEEEeC----CCeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEE-EEcCCCcEEE
Q 020454          210 IFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLAS  284 (326)
Q Consensus       210 ~~~~~~v~~~~~~p~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~i  284 (326)
                        ....++.+.+.|  +|++.++...    .+.-.+|.+..+ + +..+...-..-..++|+++++.++ +-+..+.|..
T Consensus       101 --~~~~~nd~~vd~--~G~iw~~~~~~~~~~~~g~l~~~~~g-~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1         101 --PGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAKG-K-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             --TTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEETT-E-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             --CcccceeeEECC--CCCEEEEeccccccccceeEeeecCC-c-EEEEeeccCCcceeeecCCCceEEEeecccceeeE
Confidence              112466777776  5655554432    223455655544 2 233323334557899999998765 5566788999


Q ss_pred             EECCCC--------eEEEEEcceecceEEEEEECCCCCEEEE
Q 020454          285 VDIRTG--------KLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       285 wd~~~~--------~~~~~~~~~~~~~v~~l~~~p~~~~l~s  318 (326)
                      |++...        .....+.+. .+....+++..+|.+.++
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEE
T ss_pred             eeecccccccccceEEEeccCcc-cccccceEEcCCCCEEee
Confidence            987521        112223333 556778888888775544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.88  E-value=0.1  Score=44.45  Aligned_cols=159  Identities=11%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             CCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec------CCcEEEE
Q 020454           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMR  138 (326)
Q Consensus        65 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~------~g~v~i~  138 (326)
                      ..+++.++.|+.|.-.|.++|+.+..+......    ....+.+--.+         .++.++++..      .|.|+-+
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~----~~~~~t~~P~v---------~~~~vivg~~~~e~~~~G~v~A~  187 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIK----VGSTLTIAPYV---------VKDKVIIGSSGAELGVRGYLTAY  187 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGG----GTCBCCSCCEE---------ETTEEEECCBCGGGTCCCEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccc----cccccccCCcE---------ECCeEEEeeccccccccCceEEE
Confidence            446889999999999999999988776531100    00111110000         2345666543      3677777


Q ss_pred             EccccccccccccceEEEEEcc---------------------------------------CCCceEEEEEcCCCCEEEE
Q 020454          139 SIEVTKVSAESSCSTVKSWNVC---------------------------------------ASGTIAFSKVDISEKFSLF  179 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~v~~~~~~~~~~~l~s  179 (326)
                      |....+.          +|+..                                       ....-..+++++..+++..
T Consensus       188 Da~TG~~----------~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~  257 (596)
T d1w6sa_         188 DVKTGEQ----------VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF  257 (596)
T ss_dssp             ETTTCCE----------EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ECCCCcE----------EEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeec
Confidence            7654331          12110                                       0001123455666655554


Q ss_pred             ecC----------------CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCC---cEEEEEeCCCeEE
Q 020454          180 GGK----------------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVR  240 (326)
Q Consensus       180 g~~----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~~l~~~~~dg~v~  240 (326)
                      +..                ...|...|+++++.++..+....+.+.+..+....-+.. +..++   ..++....+|.+.
T Consensus       258 ~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~-~~~~G~~~~~v~~~~k~G~~~  336 (596)
T d1w6sa_         258 GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDKDGKARKLLTHPDRNGIVY  336 (596)
T ss_dssp             ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECTTSCEEEEEEEECTTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeec-cccccccccceecccccccee
Confidence            432                345888999999999988877766665533332222211 22222   3677888999999


Q ss_pred             EEeCCCC
Q 020454          241 LYDTSAQ  247 (326)
Q Consensus       241 iwd~~~~  247 (326)
                      ++|..++
T Consensus       337 vlDr~tG  343 (596)
T d1w6sa_         337 TLDRTDG  343 (596)
T ss_dssp             EEETTTC
T ss_pred             eecCCCC
Confidence            9998877

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.59  E-value=0.17  Score=42.88  Aligned_cols=65  Identities=9%  Similarity=0.127  Sum_probs=40.5

Q ss_pred             CeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecC-CCcEEEEEeCCCeEEEEeCCCCC
Q 020454          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQR  248 (326)
Q Consensus       184 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~l~~~~~dg~v~iwd~~~~~  248 (326)
                      ..|...|+++++..+..+....+.+.+............... ....++.++.+|.+.++|..+++
T Consensus       283 ~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe  348 (573)
T d1kb0a2         283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (573)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             ceEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence            357778888998888877666555544333222222222111 11367788899999999988873

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.37  E-value=0.085  Score=44.92  Aligned_cols=78  Identities=19%  Similarity=0.214  Sum_probs=50.8

Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcceecceEE--EEEECCCCC
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR--SIARHPTLP  314 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~~p~~~  314 (326)
                      |.+.-+|+.++ +.+.+...+. ++..-.++..+..+++|+.||.++.||.++|+.+.+++-.  ..+.  -+.|..+|+
T Consensus       466 G~l~AiD~~TG-~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~--~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSG-KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG--SGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTC-CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCC-cEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC--CCccccCEEEEECCE
Confidence            56777888877 4556655442 2222123346778889999999999999999999888732  1121  145555664


Q ss_pred             -EEEE
Q 020454          315 -IIAS  318 (326)
Q Consensus       315 -~l~s  318 (326)
                       ||+.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             5443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.17  E-value=0.21  Score=39.50  Aligned_cols=148  Identities=6%  Similarity=-0.090  Sum_probs=70.1

Q ss_pred             cCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCC--------eEEEE
Q 020454          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--------QVRLY  242 (326)
Q Consensus       171 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg--------~v~iw  242 (326)
                      -++++.+..++.++.+.++|..+.............. .......-.++.+ +..+++.++.|+...        ...+.
T Consensus       190 ~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~g~v~v~GG~~~~~~~~~~~~~~~~  267 (387)
T d1k3ia3         190 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG-VAPDAMCGNAVMY-DAVKGKILTFGGSPDYQDSDATTNAHII  267 (387)
T ss_dssp             CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE-ECCCCBTCEEEEE-ETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred             eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcc-cCcccccccEEEe-eccCCceEEEEeccCCCCCcccceeecc
Confidence            3467777778777888888877654332211100000 0000011112222 223455666665321        23344


Q ss_pred             eCCCCCCceeEEee-----cCCceEEEEecCCCCeEEEEcCCC-----------cEEEEECCCCeEEEEEcceecceE-E
Q 020454          243 DTSAQRRPVMSFDF-----RETPIKAVAEEPDSFNIYIGNGSG-----------DLASVDIRTGKLLGCFIGKCSGSI-R  305 (326)
Q Consensus       243 d~~~~~~~~~~~~~-----~~~~i~~v~~s~~~~~l~~g~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~v-~  305 (326)
                      +.............     ....-.+....++|+.++.|+.++           .+.+||..+.+....-... ..+. .
T Consensus       268 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~-~~R~~H  346 (387)
T d1k3ia3         268 TLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-IVRVYH  346 (387)
T ss_dssp             ECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-SCCCTT
T ss_pred             cccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC-Ccccce
Confidence            43321111111111     111223345558999888887531           4788999887643211111 1111 1


Q ss_pred             E-EEECCCCCEEEEecc
Q 020454          306 S-IARHPTLPIIASCGF  321 (326)
Q Consensus       306 ~-l~~~p~~~~l~s~s~  321 (326)
                      + ..+.+|+++++.||.
T Consensus       347 s~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         347 SISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEEECTTSCEEEEECC
T ss_pred             EEEEECCCCEEEEEeCC
Confidence            2 235689999999884

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.91  E-value=0.27  Score=38.53  Aligned_cols=218  Identities=11%  Similarity=0.101  Sum_probs=112.7

Q ss_pred             eeeeecCcccEEEEEecCCcCCCcceeeeccCCCCCceE-EEEEeeeCCCCCeEEEEec--C--CcEEEEecccc-ceee
Q 020454           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCV-LAASIDDSQNDPLLAVARK--N--GLTDILNPLNG-DLRV   89 (326)
Q Consensus        16 ~l~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~~--d--g~i~i~~~~~~-~~~~   89 (326)
                      .++..+.++=|.++|+.+.      ...... ......+ +...+.-.....-+++++.  +  .+|.+|.+... ..+.
T Consensus        42 lI~gTdK~~Gl~vYdL~G~------~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLEGK------MLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             EEEEEETTSCCEEEETTCC------EEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             EEEEEcCcCCEEEEcCCCc------EEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3455555666999999865      322322 2222222 1111111111112444442  2  35778877422 2222


Q ss_pred             eecccCCCCCCCCCCCeeeeecccccccccCCCC-ceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEE
Q 020454           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~-~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  168 (326)
                      .+.....+. ......+.+++.+....     .+ -++++...+|.+..|.+...... ......++.+..  ...+..+
T Consensus       115 ~~~~~~~p~-~~~~~~vYGlc~y~~~~-----~g~~~afv~~k~G~v~q~~l~~~~~g-~v~~~lvr~f~~--~~q~EGC  185 (353)
T d1h6la_         115 SITDPNRPI-ASAIDEVYGFSLYHSQK-----TGKYYAMVTGKEGEFEQYELNADKNG-YISGKKVRAFKM--NSQTEGM  185 (353)
T ss_dssp             ECSCSSSCE-ECSSSSCCCEEEEECTT-----TCCEEEEEECSSSEEEEEEEEECTTS-SEEEEEEEEEEC--SSCEEEE
T ss_pred             ccccccccc-ccccCcceEEEEEecCC-----CCeEEEEEEcCCceEEEEEEEcCCCC-ceeeEeeeccCC--CCccceE
Confidence            222111000 01112355666544211     12 25677778899988887543211 011234555554  5689999


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCCc-----eeeeeecCCCCCCCCcCCCCceeeeEEeec--CCCcEEEEEeCCCeEEE
Q 020454          169 KVDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTNDHQVRL  241 (326)
Q Consensus       169 ~~~~~~~~l~sg~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~~l~~~~~dg~v~i  241 (326)
                      .++...+.|..+-++..|..++....     ..+....+..       ....+..++.-..  .+|.+|++.-.+.+..+
T Consensus       186 VvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~-------l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         186 AADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-------LTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             EEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSS-------CCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             EEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCcc-------ccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            99998888888888877766665421     2222221100       1134566665432  34556666667889999


Q ss_pred             EeCCCCCCceeEEee
Q 020454          242 YDTSAQRRPVMSFDF  256 (326)
Q Consensus       242 wd~~~~~~~~~~~~~  256 (326)
                      ||.......+..|..
T Consensus       259 ydr~~~~~~~g~F~i  273 (353)
T d1h6la_         259 YERQGQNKYVADFQI  273 (353)
T ss_dssp             EESSTTCCEEEEEEE
T ss_pred             EecCCCccccceEEE
Confidence            998865456666653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.44  Score=37.71  Aligned_cols=149  Identities=13%  Similarity=0.047  Sum_probs=90.3

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      ....-+++++...+++.|+.+ .+.|..+..-+....................|..++|+.  +  .++... ++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~--d--~l~v~~-~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG--D--QVLVST-RNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET--T--EEEEEE-SSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC--C--EEEEEe-CCCEEEE
Confidence            346678888888888888777 566776543221111111111100000113578888863  2  455543 5678888


Q ss_pred             eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEcce----ecceEEEEEECCCCCEEEE
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHPTLPIIAS  318 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~s  318 (326)
                      +...... .........++..+.++|.  .++....+|.+.++++..++......+-    ..+.+.++.|++.+..+++
T Consensus       111 ~~~~l~~-~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         111 DLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             ESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             Eeecccc-ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            8776522 3344444567888888764  5666778899999999987543321110    2467889999999988887


Q ss_pred             ec
Q 020454          319 CG  320 (326)
Q Consensus       319 ~s  320 (326)
                      +.
T Consensus       188 ~~  189 (381)
T d1xipa_         188 WR  189 (381)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.31  E-value=0.3  Score=34.95  Aligned_cols=199  Identities=15%  Similarity=0.092  Sum_probs=103.0

Q ss_pred             CCCeEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEecCCcEEEEEcccc
Q 020454           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (326)
Q Consensus        64 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~g~v~i~~~~~~  143 (326)
                      .+++++++...|.+.++-+..++.+...+           .+|.... .++.      .-+.++        .+.|+...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk-----------ePI~~~~-~Pk~------~ldfi~--------f~RDV~kG   78 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR-----------EPINSVL-DPHY------GVGRVI--------LVRDVSKG   78 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS-----------SCCSEEC-EECT------TBSEEE--------EEEECSTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec-----------ccccCcC-CCcc------CcceEE--------EEeehhcC
Confidence            34578899999999999988777655443           3444222 2211      112222        22333221


Q ss_pred             ccccccccceEEE---------EEccCCCc--eEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCC
Q 020454          144 KVSAESSCSTVKS---------WNVCASGT--IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (326)
Q Consensus       144 ~~~~~~~~~~~~~---------~~~~~~~~--v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  212 (326)
                      .     ..+.+.+         +++....+  |.+++.. +.+.+.+|+......+|-++.++...-..-.+.....--.
T Consensus        79 k-----E~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~  152 (313)
T d2hu7a1          79 A-----EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR  152 (313)
T ss_dssp             S-----CCEEEEEEETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE
T ss_pred             c-----ceeeEEEEccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc
Confidence            1     1111222         22233333  4444444 4577888988888999988887643322111100000001


Q ss_pred             CCceeeeEEeecCCCcEEEEEeC-CCeEEEEeCCCCC----------Ccee-----------EEeec-------------
Q 020454          213 PTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQR----------RPVM-----------SFDFR-------------  257 (326)
Q Consensus       213 ~~~v~~~~~~p~~~~~~l~~~~~-dg~v~iwd~~~~~----------~~~~-----------~~~~~-------------  257 (326)
                      ...|..+.+.-. +..-|+++.. .|.+++++...+.          +.+.           ++...             
T Consensus       153 ~d~I~G~g~~~g-~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd  231 (313)
T d2hu7a1         153 GDLIAGLGFFGG-GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKD  231 (313)
T ss_dssp             TTEEEEEEEEET-TEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCH
T ss_pred             CCeEEEEeeecC-CcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCccc
Confidence            123445555432 2234555554 7788888765431          1000           11111             


Q ss_pred             -----CCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEEEEEc
Q 020454          258 -----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (326)
Q Consensus       258 -----~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~  297 (326)
                           .-.|+=+-+.|++++++.+-.||.=++|.  +|+.+..-+
T Consensus       232 ~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~  274 (313)
T d2hu7a1         232 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAPQ  274 (313)
T ss_dssp             HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCCS
T ss_pred             ceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecCCC
Confidence                 11344455889999989999999999996  355554433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.49  Score=37.48  Aligned_cols=176  Identities=11%  Similarity=0.026  Sum_probs=89.7

Q ss_pred             CCceEEEEecCCcEEEEEccccccc-cc--cccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVS-AE--SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~-~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  198 (326)
                      ..+.+++++.++ +.+.....-... ..  ..+.......   -..|..++++.+  .|+.. .++.+..++...-....
T Consensus        47 ~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~---ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~  119 (381)
T d1xipa_          47 SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE---IPDVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFR  119 (381)
T ss_dssp             TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE---CTTEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEE
T ss_pred             CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC---CCCeEEEEeeCC--EEEEE-eCCCEEEEEeecccccc
Confidence            445677777664 567665432111 01  1111111112   236888889743  45443 45578888876543322


Q ss_pred             eecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCC-ce----eEEeecCCceEEEEecCCCCeE
Q 020454          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PV----MSFDFRETPIKAVAEEPDSFNI  273 (326)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~-~~----~~~~~~~~~i~~v~~s~~~~~l  273 (326)
                      ......         ..+..+.+.|.    .++....++.+.++++..... ++    ..+... ..+.+++|++.|..+
T Consensus       120 ~~~~~~---------~~~~~~~~~p~----~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~-~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         120 TVTSFE---------KPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT-NSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EEEECS---------SCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC-SSEEEEEETTSCEEE
T ss_pred             cccccc---------ccccceecCCc----eeEEEecCCCEEEEEeccCccccccCCcceEEec-CCceEEEEeCCcEEE
Confidence            221111         23456666552    677788899999999886621 11    112222 557777888878777


Q ss_pred             EEEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       274 ~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      +++..++.-.--++.....+..-... ...|.+|.|-.+..+++.-
T Consensus       186 v~~~g~~~q~k~~i~~~~~~~~p~~~-~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCCceeeccCCCCccccCCCcCC-CcceeEEEEecCceEEEEE
Confidence            77643321111111111100000011 3467889998776666654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.39  E-value=0.16  Score=40.32  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=65.7

Q ss_pred             EEEEcCCCCEEEEecCCC-----------eEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeC
Q 020454          167 FSKVDISEKFSLFGGKGV-----------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~  235 (326)
                      ......++++++.|+.+.           .+.+||..+++-........      .+.....+.++.+  ++++++.|+.
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~------~~~~~~~~~~~~~--~g~i~v~Gg~   95 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT------KHDMFCPGISMDG--NGQIVVTGGN   95 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC------SCCCSSCEEEECT--TSCEEEECSS
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC------CcccceeEEEEec--CCcEEEeecC
Confidence            333445678888777431           36789998765322111000      0001122445554  6667777765


Q ss_pred             C-CeEEEEeCCCCCCceeEEee--cCCceEEEEecCCCCeEEEEcCC------CcEEEEECCCCeE
Q 020454          236 D-HQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKL  292 (326)
Q Consensus       236 d-g~v~iwd~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l~~g~~d------g~v~iwd~~~~~~  292 (326)
                      + ..+.+||+.+. . -.....  ....-..++..+||+.++.|+.+      ..+.+||..+.+.
T Consensus        96 ~~~~~~~yd~~~~-~-w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          96 DAKKTSLYDSSSD-S-WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             STTCEEEEEGGGT-E-EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CCcceeEecCccC-c-ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            4 58999998864 2 111111  11122345667899998888753      3689999987643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.52  E-value=1.1  Score=33.93  Aligned_cols=125  Identities=14%  Similarity=0.168  Sum_probs=82.3

Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCC
Q 020454          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~  246 (326)
                      +.-.||..+.||.-+ ..++.+||+++.+.+....-..          .|.=-.|..   .+.|+-.+ +..|+-|++..
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e----------~VvfWkWis---~~~L~lVT-~taVYHW~~~g  131 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWIS---LNTVALVT-DNAVYHWSMEG  131 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----------CCCEEEESS---SSEEEEEC-SSEEEEEESSS
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC----------CcEEEEecC---CCEEEEEc-CCceEEEcccC
Confidence            445788889888765 5689999999988877654322          233335653   23666665 57899999976


Q ss_pred             CCCceeEEeec----CCceEEEEecCCCCeEEE-E--cC----CCcEEEEECCCCeEEEEEcceecceEEEEE
Q 020454          247 QRRPVMSFDFR----ETPIKAVAEEPDSFNIYI-G--NG----SGDLASVDIRTGKLLGCFIGKCSGSIRSIA  308 (326)
Q Consensus       247 ~~~~~~~~~~~----~~~i~~v~~s~~~~~l~~-g--~~----dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~  308 (326)
                      ...|++.++-|    ...|-.-..+++.++++. |  ..    .|.+.+|..+.. ..+.+.|| .+.-..+.
T Consensus       132 ~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh-aa~F~~~~  202 (327)
T d1utca2         132 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH-AASFAQFK  202 (327)
T ss_dssp             SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS-EEEEEEEC
T ss_pred             CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccce-eeeeEEEE
Confidence            55688777754    346777778888887762 2  22    367889988754 44456676 44444443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.76  E-value=1.3  Score=32.81  Aligned_cols=253  Identities=10%  Similarity=0.051  Sum_probs=131.1

Q ss_pred             eeecCcccEEEEEecCCcCCCcceeeeccCCCCCceEEEEEeeeCCCCCeEEEEecCCcEEEEeccccceeeeecccCCC
Q 020454           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS   97 (326)
Q Consensus        18 ~~~~~~G~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~   97 (326)
                      +-.+..+.|+-..++..............  .....+.++.++.. .+.+..+-..++.|+..++..+.. ..+..    
T Consensus         4 Ll~s~~~~I~~~~ld~~~~~~~~~~~~~~--~~~~~~~~ld~D~~-~~~iywsd~~~~~I~~~~l~g~~~-~~v~~----   75 (263)
T d1npea_           4 LLFAQTGKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEP-TTIIR----   75 (263)
T ss_dssp             EEEEEEEEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETT-TTEEEEEETTTTEEEEEESSSCCC-EEEEC----
T ss_pred             EEEeCCCeEEEEECCCccccccccccccc--cCCCcEEEEEEEeC-CCEEEEEECCCCeEEEEEcccCCc-EEEEE----
Confidence            34455567777777655211111111111  11223344555433 233344445668888888854443 33221    


Q ss_pred             CCCCCCCCeeeeecccccccccCCCCceEE-EEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCE
Q 020454           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (326)
Q Consensus        98 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~-~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (326)
                         .+-..+.++++-.        ..+.|. +-...+.|.+.+++....      ..  +.. ........++++|...+
T Consensus        76 ---~~~~~p~~iAvD~--------~~~~lY~~d~~~~~I~~~~~dg~~~------~~--l~~-~~l~~p~~l~vdp~~g~  135 (263)
T d1npea_          76 ---QDLGSPEGIALDH--------LGRTIFWTDSQLDRIEVAKMDGTQR------RV--LFD-TGLVNPRGIVTDPVRGN  135 (263)
T ss_dssp             ---TTCCCEEEEEEET--------TTTEEEEEETTTTEEEEEETTSCSC------EE--EEC-SSCSSEEEEEEETTTTE
T ss_pred             ---eccccccEEEEec--------cCCeEEEeccCCCEEEEEecCCceE------EE--Eec-ccccCCcEEEEecccCc
Confidence               2223456666522        233444 445567888777654321      11  111 22356789999998766


Q ss_pred             EEEecC---CCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCCCCceeE
Q 020454          177 SLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (326)
Q Consensus       177 l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  253 (326)
                      |.....   ...|.--++............      +   ....++++.+. .+++..+-...+.|...|+... .....
T Consensus       136 ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~------~---~~P~glaiD~~-~~~lYw~d~~~~~I~~~~~~g~-~~~~v  204 (263)
T d1npea_         136 LYWTDWNRDNPKIETSHMDGTNRRILAQDN------L---GLPNGLTFDAF-SSQLCWVDAGTHRAECLNPAQP-GRRKV  204 (263)
T ss_dssp             EEEEECCSSSCEEEEEETTSCCCEEEECTT------C---SCEEEEEEETT-TTEEEEEETTTTEEEEEETTEE-EEEEE
T ss_pred             EEEeecCCCCcEEEEecCCCCCceeeeeec------c---cccceEEEeec-CcEEEEEeCCCCEEEEEECCCC-CeEEE
Confidence            654322   223444455433222211110      1   34568888774 3434455567889999998754 21222


Q ss_pred             EeecCCceEEEEecCCCCeEE-EEcCCCcEEEEECCCCeEEEEEcceecceEEEEEECCC
Q 020454          254 FDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (326)
Q Consensus       254 ~~~~~~~i~~v~~s~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~  312 (326)
                      +... .....|++.  +.+|+ +-...+.|...|..+++.+..+..+......+|++.++
T Consensus       205 ~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         205 LEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             ECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            2222 334577774  45565 54567889999999998887664321344556665543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.60  E-value=2.1  Score=34.64  Aligned_cols=61  Identities=7%  Similarity=-0.194  Sum_probs=38.4

Q ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       163 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                      ....+|+|.|++++|++--..|.|++++..+++....... ........-......++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~-~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV-PEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-TTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccC-CccccccCCCCceeeEEeCCC
Confidence            4677999999999988765579999999877654322211 111000111234668899985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=1.5  Score=32.63  Aligned_cols=148  Identities=9%  Similarity=-0.017  Sum_probs=84.2

Q ss_pred             CCCceEEEEEcCCCCEEEEe-cCCCeEEEEECCCcee---eeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCC
Q 020454          161 ASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (326)
Q Consensus       161 ~~~~v~~~~~~~~~~~l~sg-~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~d  236 (326)
                      ....+..+++++..+.|.-. ..++.|.-.++.....   ........     +   ..+.++++.+. .+++..+-...
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~-----~---~~p~glAvD~~-~~~lY~~d~~~   98 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----I---QAPDGLAVDWI-HSNIYWTDSVL   98 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-----C---SCCCEEEEETT-TTEEEEEETTT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC-----C---CCcceEEEeec-cceEEEEecCC
Confidence            34567789999877666544 3556676666643211   01110000     1   22456777654 34466666778


Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEc--CCCcEEEEECCCCeEEEEEcceecceEEEEEECCCCC
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~  314 (326)
                      +.|.+.++... ...............++++|...+|+...  ..+.|.-.++............ .....+|++++.++
T Consensus        99 ~~I~v~~~~g~-~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~-~~~p~gl~iD~~~~  176 (266)
T d1ijqa1          99 GTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSG  176 (266)
T ss_dssp             TEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTT
T ss_pred             CEEEeEecCCc-eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc-cceeeEEEeecccc
Confidence            89999998854 32333434446678999998766666443  3346777777544333333332 34567888887665


Q ss_pred             EEEEe
Q 020454          315 IIASC  319 (326)
Q Consensus       315 ~l~s~  319 (326)
                      .|.-+
T Consensus       177 ~lYw~  181 (266)
T d1ijqa1         177 RLYWV  181 (266)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.06  E-value=1.7  Score=32.26  Aligned_cols=144  Identities=9%  Similarity=0.007  Sum_probs=85.5

Q ss_pred             ceEEEEEcCCCCEEEEe-cCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEE
Q 020454          164 TIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (326)
Q Consensus       164 ~v~~~~~~~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iw  242 (326)
                      .+..+++++..+.|.-. ..++.|...++.............         ..+.++++... .+++..+-...+.|.+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~---------~~p~~iAvD~~-~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---------GSPEGIALDHL-GRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---------CCEEEEEEETT-TTEEEEEETTTTEEEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc---------ccccEEEEecc-CCeEEEeccCCCEEEEE
Confidence            57788999877655544 566788888887654433322210         23567787653 34455566678899999


Q ss_pred             eCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC---CcEEEEECCCCeEEEEEcceecceEEEEEECCCCCEEEEe
Q 020454          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (326)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  319 (326)
                      ++... .....+...-.....++++|...+++.....   ..|.--++............ ......|++++.++.|.-+
T Consensus       107 ~~dg~-~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~-~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         107 KMDGT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN-LGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             ETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT-CSCEEEEEEETTTTEEEEE
T ss_pred             ecCCc-eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec-ccccceEEEeecCcEEEEE
Confidence            98854 3222222333568899999987777744332   23444455533322223222 3456789998766655443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.44  E-value=2.4  Score=31.03  Aligned_cols=53  Identities=13%  Similarity=0.053  Sum_probs=34.8

Q ss_pred             CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCCCcEEEEECCCCeEE
Q 020454          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (326)
Q Consensus       237 g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~dg~v~iwd~~~~~~~  293 (326)
                      ..|.++|+... . ...+..+. ......|+|||+.|+- ..++.|+++|+.+++..
T Consensus       214 ~~l~~~d~~g~-~-~~~lt~~~-~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         214 GQIYSTDLDGK-D-LRKHTSFT-DYYPRHLNTDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             CEEEEEETTSC-S-CEECCCCC-SSCEEEEEESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             cceEEEeCCCC-c-eEEeecCC-CcccccCcCCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            36777788755 2 33343322 2233468999999875 34678999999888754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=3.5  Score=30.41  Aligned_cols=190  Identities=9%  Similarity=-0.039  Sum_probs=101.5

Q ss_pred             eEEEEecCCcEEEEeccccceeeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEe-cCCcEEEEEcccccc
Q 020454           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKV  145 (326)
Q Consensus        67 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~-~~g~v~i~~~~~~~~  145 (326)
                      +|+.+.. ..|+-+++.+.+....+.         +...+.++.+..        ..+.+.-.. ..+.|...+++....
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~---------~~~~~~~id~d~--------~~~~lYw~D~~~~~I~~~~l~~~~~   64 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP---------NLRNVVALDTEV--------ASNRIYWSDLSQRMICSTQLDRAHG   64 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC---------SCSSEEEEEEET--------TTTEEEEEETTTTEEEEEEC-----
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC---------CCCceEEEEEEe--------CCCEEEEEECCCCEEEEEEecCCCC
Confidence            3555554 458888987655433322         123456676533        234444332 344455444432111


Q ss_pred             ccccccceEEEEEccCCCceEEEEEcCCCCEE-EEecCCCeEEEEECCCceeeeeecCCCCCCCCcCCCCceeeeEEeec
Q 020454          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (326)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  224 (326)
                      .     ......-......+..+++++.++.| .+-...+.|.+.++.............         ....+++..|.
T Consensus        65 ~-----~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~---------~~P~~l~vd~~  130 (266)
T d1ijqa1          65 V-----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVVDPV  130 (266)
T ss_dssp             --------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEEETT
T ss_pred             C-----cceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCC---------CCcceEEEEcc
Confidence            0     01111111223456678888755444 444566789999988655433322211         23567888875


Q ss_pred             CCCcEEEEE-eCCCeEEEEeCCCCCCceeEEe-ecCCceEEEEecCCCCeEEEE-cCCCcEEEEECCCCe
Q 020454          225 DDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK  291 (326)
Q Consensus       225 ~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~g-~~dg~v~iwd~~~~~  291 (326)
                       .+.++.+- +..+.|.-.++... . ...+. ..-.....+++++.++.|+.. ...+.|...++....
T Consensus       131 -~g~ly~~~~~~~~~I~r~~~dGs-~-~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         131 -HGFMYWTDWGTPAKIKKGGLNGV-D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             -TTEEEEEECSSSCEEEEEETTSC-C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             -cCeEEEeccCCCcceeEeccCCC-c-eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence             45444443 23456666666633 2 33332 233456889999887777744 567889999987543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.53  E-value=5.7  Score=31.60  Aligned_cols=99  Identities=10%  Similarity=0.027  Sum_probs=57.2

Q ss_pred             eeEEeecCCCcEEEEE-eCC----CeEEEEeCCCCCCceeEEeecCCceEEEEecCCCCeEEEEcCC-------------
Q 020454          218 SAAFLSIDDHRKFVAG-TND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-------------  279 (326)
Q Consensus       218 ~~~~~p~~~~~~l~~~-~~d----g~v~iwd~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~g~~d-------------  279 (326)
                      ..+++|  ++++++.+ +..    -.++++|+.++ +.+. ..........++|.+|++.|+-...+             
T Consensus       129 ~~~~Sp--d~~~la~s~d~~G~e~~~l~v~Dl~tg-~~~~-~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         129 GYAFSE--DGEYFAYGLSASGSDWVTIKFMKVDGA-KELP-DVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEECT--TSSEEEEEEEETTCSCEEEEEEETTTT-EEEE-EEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ceEecC--CCCEEEEEeccccCchheeEEeccCcc-eecc-cccccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            344454  66666643 333    37999999987 3332 11222223568999999887633221             


Q ss_pred             ---CcEEEEECCCCeE--EEEEcce-ecceEEEEEECCCCCEEEEec
Q 020454          280 ---GDLASVDIRTGKL--LGCFIGK-CSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       280 ---g~v~iwd~~~~~~--~~~~~~~-~~~~v~~l~~~p~~~~l~s~s  320 (326)
                         ..|..+.+.+...  ...+... ....+..+..++++++++...
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence               2577887776422  2233332 023466778889998876543

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.61  E-value=5.4  Score=30.42  Aligned_cols=162  Identities=11%  Similarity=0.101  Sum_probs=95.7

Q ss_pred             CCceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCCceeee-ee
Q 020454          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TA  200 (326)
Q Consensus       122 ~~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~  200 (326)
                      .+..++..+..|.++...+.....  ....+.+....+.....+..+........++.++..|.+..|+...-+... ..
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~--~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a  182 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKA--QRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRA  182 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCC--SCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSC
T ss_pred             cceeEEEEeehhheeeccHHHhhh--hhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccc
Confidence            467899999999999988775421  111223344455666777777777666778888999999999876533321 11


Q ss_pred             cCCCCCCCCcCCCCceeeeEEeecCCCcEEEEEeCCCeEEEEeCCCC---C---CceeEEe---ecCCceEEEEecCCCC
Q 020454          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---R---RPVMSFD---FRETPIKAVAEEPDSF  271 (326)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~l~~~~~dg~v~iwd~~~~---~---~~~~~~~---~~~~~i~~v~~s~~~~  271 (326)
                      .+.  ....+.....|-+....+. +...++..+..|..+.-.+...   .   +-+..+.   .....+..+....+..
T Consensus       183 ~GV--~~ikL~~~D~vv~~~~~~~-~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d  259 (323)
T d1wp5a_         183 AGV--KGMNLKEGDYIVSGQLITS-KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSD  259 (323)
T ss_dssp             CCE--ECCCCCTTCCEEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTC
T ss_pred             ccc--cccccccccccchhhhccc-cccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCC
Confidence            111  1112223344555545443 3347888888998887654321   1   1122222   1223455555555666


Q ss_pred             eEEEEcCCCcEEEEECC
Q 020454          272 NIYIGNGSGDLASVDIR  288 (326)
Q Consensus       272 ~l~~g~~dg~v~iwd~~  288 (326)
                      .|+..+..|.+.-.++.
T Consensus       260 ~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         260 TIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             EEEEEETTSCEEEEEGG
T ss_pred             EEEEEeCCCEEEEEEhh
Confidence            67777777877666654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.55  E-value=5.6  Score=30.57  Aligned_cols=148  Identities=6%  Similarity=-0.076  Sum_probs=77.4

Q ss_pred             EEEEcCCCCEEEEecC------------CCeEEEEECCCceeee-e--ecCCCCCCCCcCCCCceeeeEEeecCCCc-EE
Q 020454          167 FSKVDISEKFSLFGGK------------GVEVNVWDLDKCEKIW-T--AKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF  230 (326)
Q Consensus       167 ~~~~~~~~~~l~sg~~------------d~~i~iwd~~~~~~~~-~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-~l  230 (326)
                      .|...|++..+++++.            .|.|.++|+.+.+... .  ..........    -....+.....+++. +|
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~----f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISS----FNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGG----CCEEEEEEEECTTCCEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcc----eeccceeEEEcCCCcEEE
Confidence            4566677765555432            4889999987654322 1  1111111100    012344544433443 45


Q ss_pred             EEEe---CCCeEEEEeCCCCCCce---eEEee-cCCceEEEEecCCCCeEEEEcCC---------------CcEEEEECC
Q 020454          231 VAGT---NDHQVRLYDTSAQRRPV---MSFDF-RETPIKAVAEEPDSFNIYIGNGS---------------GDLASVDIR  288 (326)
Q Consensus       231 ~~~~---~dg~v~iwd~~~~~~~~---~~~~~-~~~~i~~v~~s~~~~~l~~g~~d---------------g~v~iwd~~  288 (326)
                      ++..   ...+|.+|++......+   .++.. .....+++++..++.++++-...               +.-.+|...
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            5543   35688888876442211   12221 12356888888888888873211               123344444


Q ss_pred             CCeEEEEEcceecceEEEEEECCCCCEEEEec
Q 020454          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (326)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~s  320 (326)
                      .++...... . -..-+.|+++|++++|+.+.
T Consensus       195 ~~~~~~~~~-~-l~~pNGI~~s~d~~~lyVa~  224 (340)
T d1v04a_         195 PNDVRVVAE-G-FDFANGINISPDGKYVYIAE  224 (340)
T ss_dssp             SSCEEEEEE-E-ESSEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEcC-C-CCccceeEECCCCCEEEEEe
Confidence            333322222 2 44678999999998777664

>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: DNA gyrase A C-terminal domain
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=84.51  E-value=6.6  Score=29.58  Aligned_cols=121  Identities=10%  Similarity=0.077  Sum_probs=79.9

Q ss_pred             EEeeeCCCCCeEEEEecCCcEEEEeccccce-----eeeecccCCCCCCCCCCCeeeeecccccccccCCCCceEEEEec
Q 020454           57 ASIDDSQNDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (326)
Q Consensus        57 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~  131 (326)
                      +...+-....+++..+.+|.|+-.++..-..     +..+..       ..+..+.......        .+..++..+.
T Consensus        99 ~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~~~~~~~a~kL-------~~~D~lv~v~~~~--------~~~~v~~~t~  163 (304)
T d1suua_          99 KNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL-------NDKDFVTSAEIVF--------KDEKVICLSK  163 (304)
T ss_dssp             EEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC-------CTTCCEEEEEEEC--------TTCEEEEEET
T ss_pred             cccccccccceEEEEEehhhhhhcccchhhccccccceeecc-------cchhhcccccccc--------ccceeEeecc
Confidence            3333334566899999999999998753211     111111       2223444444333        4567888999


Q ss_pred             CCcEEEEEccccccccccccceEEEEEccCCCceEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 020454          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK  193 (326)
Q Consensus       132 ~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~  193 (326)
                      .|....++.+... ..+....-++..++.....+..+...+++.+++..+.+|..+...+..
T Consensus       164 ~G~~lrf~~~~v~-~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~ll~iT~~G~gKr~~~~e  224 (304)
T d1suua_         164 KGSAFIFNSRDVR-LTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  224 (304)
T ss_dssp             TSEEEEEEGGGSC-BCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             ccceeeecccccc-ccCccccceeeecccccccceeeeeccCCceEEEEecCCceEEccchh
Confidence            9999888876544 334444456666677777888888887888888889999998888764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.37  E-value=9.1  Score=29.54  Aligned_cols=172  Identities=11%  Similarity=0.180  Sum_probs=92.4

Q ss_pred             CceEEEEecCCcEEEEEccccccccccccceEEEEEccCCCceEEEE------EcCCCCEEEEec-CC---CeEEEEECC
Q 020454          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGG-KG---VEVNVWDLD  192 (326)
Q Consensus       123 ~~~l~~~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~sg~-~d---~~i~iwd~~  192 (326)
                      ...++.....+.+++|+++.+.         +....   .+.++-+.      +.....-++.++ .+   .+|.+|.+.
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~G~~---------l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id  107 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLEGKM---------LHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (353)
T ss_dssp             GCEEEEEETTSCCEEEETTCCE---------EEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEE
T ss_pred             ccEEEEEcCcCCEEEEcCCCcE---------EEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEec
Confidence            3456666667789999986432         11111   22333333      222222344444 22   368888875


Q ss_pred             Cc-eeeeeecCCCCCCCCcCCCCceeeeEE--eecCCCc-EEEEEeCCCeEEEEeCCCCC------CceeEEeecCCceE
Q 020454          193 KC-EKIWTAKPPPKNSLGIFTPTWFTSAAF--LSIDDHR-KFVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIK  262 (326)
Q Consensus       193 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~-~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~i~  262 (326)
                      .. ..+..+.......  ......++++++  .|. ++. ++++...+|.+..|.+....      ..++++... ..+.
T Consensus       108 ~~~~~l~~~~~~~~p~--~~~~~~vYGlc~y~~~~-~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~q~E  183 (353)
T d1h6la_         108 GKNGTLQSITDPNRPI--ASAIDEVYGFSLYHSQK-TGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-SQTE  183 (353)
T ss_dssp             TTTTEEEECSCSSSCE--ECSSSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-SCEE
T ss_pred             Cccccccccccccccc--ccccCcceEEEEEecCC-CCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-Cccc
Confidence            32 2222222211110  001123667777  343 343 56677788999988764221      123445443 5688


Q ss_pred             EEEecCCCCeEEEEcCCCcEEEEECCC-----CeEEEEEcc-eecceEEEEEEC
Q 020454          263 AVAEEPDSFNIYIGNGSGDLASVDIRT-----GKLLGCFIG-KCSGSIRSIARH  310 (326)
Q Consensus       263 ~v~~s~~~~~l~~g~~dg~v~iwd~~~-----~~~~~~~~~-~~~~~v~~l~~~  310 (326)
                      .+.+.+....|+.+-++.-|..++..-     +..+....+ +..+.+..|+.-
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy  237 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIY  237 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEE
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEE
Confidence            889998889999998887776666542     233333322 346678887754