Citrus Sinensis ID: 020539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MRMNPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHVISEDDAVSLSLCCVLCF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHEEEEEHHcccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccEHHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHEEEEEEEEHEHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEEEcccccccccccccccccEEEEcccccccEEEEcccccccccEEEEEEc
Coil and Loop (DISEMBL)
mrmnppadaaetspllahslpdhlirsrrllrrpppplRGAAARLLRRASGrrlmlrepsvRVRETAAEQLEERQsywaysrpiIVLDVLWNLVFVIVAFAVLGvsinekpevplRLRIVGYALQCLFHVFCVslefkrrrrgegvvfgdsvsgsssttvtgdeeerfhgendssVAKNLESANTFLSFLWWIVGFYWITAsgetliscspqLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAlteregateeeidrlpkfkfsridglekvngeiqepfggimiecdtdmpmehviseddAVSLSLCCVLCF
Flexible Loop (DISEMBL)
mrmnppadaaetspllahSLPDHLIrsrrllrrpppplrgAAARLlrrasgrrlmlrepsvrvrETAAEQLeerqsywaysRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGegvvfgdsvsgsssttvtgdeeerfhgendssVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATeeeidrlpkfkfsridglekvngeiqepfGGIMIECDTDMPMEHVISEDDAVSLSLCCVLCF
Low Complexity Region (SEG)
MRMNPPADAAETSPLLAHSLPDHLIrsrrllrrpppplrgaaarllrrasgrrlmlrEPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRgegvvfgdsvsgsssttvtgdeeeRFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHVISEDDAVSLSLCCVLCF
Disordered region (IsUnstruct)
**************************************************************************QSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVF**********************************ANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHVISEDDAVSLSLCCVLC*
Disordered Region (DISOPRED)
******************************************************************************AYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFK****************************************NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALT*******EEIDRLPKFK*********************MIECDTDMPMEHVISEDDAVSLSLCCVLCF
Disordered Region (DISEMBL)
***********TSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFG**************************VAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHVISEDDAVSLSLCCVLCF
Disordered Region (DISPRO)
************************************************************VRVRE*******ERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRR******************************DSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRID*************GGIMIECDTDMPMEHVISEDDAVSLSLCCVLCF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRMNPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHVISEDDAVSLSLCCVLCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.913	0.761	0.504	6e-75
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.883	0.703	0.484	9e-68
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.849	0.724	0.514	9e-67
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.735	0.665	0.432	2e-52

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  281 bits (718), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 162/321 (50%), Positives = 217/321 (67%), Gaps = 24/321 (7%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           P     T  +   S P H    R+ LR         AAR LR A  RR+M REPS+ VRE
Sbjct: 40  PPTVTRTISVDEESNPIHRSARRQGLRE--------AARFLRHAGSRRMM-REPSMLVRE 90

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQLEERQS WAYS+P++ LD+LWNL FV +  AVL +S +EKP +PLR+ +VGY +Q
Sbjct: 91  TAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQ 150

Query: 126 CLFHVFCVSLEFKRRRRG----EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLE 181
           C  H+ CV +E++RRRR     +G   G + S S         E+R  GE  S+ AK+LE
Sbjct: 151 CWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDR--GET-SNPAKHLE 207

Query: 182 SANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIA 241
           SANT  SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC+IG+A
Sbjct: 208 SANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLA 267

Query: 242 VCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDT 301
           VCCCLPCI+ ILYA+ ++EGA++ +ID++PKF+F++   +EK++G+ +    GIM EC T
Sbjct: 268 VCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTECGT 323

Query: 302 DMPMEHVISEDDAVSLSLCCV 322
           D P+E  +S +DA     CC+
Sbjct: 324 DSPIERSLSPEDAE----CCI 340

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 153/316 (48%), Positives = 204/316 (64%), Gaps = 29/316 (9%)

Query: 28  RRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVL 87
           RR +RR    LR  AAR L RAS  R+M REPS+ VRE AAEQLEERQS WAYS+P++VL
Sbjct: 48  RRSVRRQG--LR-EAARFLSRASSGRVM-REPSMLVREAAAEQLEERQSDWAYSKPVVVL 103

Query: 88  DVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVV 147
           D++WNL FV VA A+L +S  E P +PLR+ ++GYALQC+ H+ CV +E++RR R     
Sbjct: 104 DIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNR 163

Query: 148 --------------------FGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFL 187
                                 +   GS   +   D          SSVAK+LESANT  
Sbjct: 164 TTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMF 223

Query: 188 SFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLP 247
           SF+WWI+GFYW++A G+ L   SP++YWL + FL FDV FV+ CV +AC+IGIAVCCCLP
Sbjct: 224 SFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLP 283

Query: 248 CILGILYALTEREGATEEEIDRLPKFKFSRI-DGLEKVNGEIQEPFGGIMIECDTDMPME 306
           CI+ +LYA+ ++EGA++E+I++L KFKF ++ D  +  N E Q    GIM EC TD P+E
Sbjct: 284 CIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIE 343

Query: 307 HVISEDDAVSLSLCCV 322
           H + ++DA     CC+
Sbjct: 344 HTLLQEDAE----CCI 355

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  253 bits (647), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 155/301 (51%), Positives = 208/301 (69%), Gaps = 25/301 (8%)

Query: 42  AARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFA 101
           AARLLR AS  R+M+REPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA A
Sbjct: 32  AARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATA 91

Query: 102 VLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161
           VL +S +E P +PLR+ I+GY LQC+ H+ CV +E++RR            S SSS++ +
Sbjct: 92  VLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSS 151

Query: 162 G-DEEE----------------RFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
             DEEE                +   EN+S  AK+LESANT +SF+WW++GFYW+++ G+
Sbjct: 152 SMDEEEGLGLSRNSDERYLELGQLENENNS-FAKHLESANTMISFIWWVIGFYWVSSGGQ 210

Query: 205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATE 264
            L   SPQLYWLC+ FL FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+EGA++
Sbjct: 211 ELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASK 270

Query: 265 EEIDRLPKFKFSRI-DGLEKVNGEIQEP--FGGIMIECDTDMPMEHVISEDDAVSLSLCC 321
           E+ID+L KFKF ++ D ++    E Q     GG+M EC TD P+EH +  +DA     CC
Sbjct: 271 EDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAE----CC 326

Query: 322 V 322
           +
Sbjct: 327 I 327

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 141/243 (58%), Gaps = 4/243 (1%)

Query: 41  AAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAF 100
           A A LL R +G R     PS+ VRETAA  LEER+  W YS+P++  D+LWN   V+ + 
Sbjct: 38  ALAVLLGRITGHR----APSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASA 93

Query: 101 AVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTV 160
            +L  ++ E+P  P+R+ I  Y LQCLFHV  V  E+ RR         +S         
Sbjct: 94  VMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIE 153

Query: 161 TGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTF 220
              E++        S  K  ES NT +SF+WWI+GFYW+   G+ L+  +P LYWL V F
Sbjct: 154 YDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIF 213

Query: 221 LAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDG 280
           LA DV F + CV +ACL+GIA+CCCLPCI+ +LYA+   EG +E E+  LP +KF     
Sbjct: 214 LAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHS 273

Query: 281 LEK 283
            EK
Sbjct: 274 NEK 276

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
449432181	385	PREDICTED: E3 ubiquitin-protein ligase A	0.96	0.810	0.590	1e-108
255541482	375	cleavage and polyadenylation specificity	0.969	0.84	0.613	1e-100
18411876	379	RING/U-box domain-containing protein [Ar	0.950	0.815	0.572	9e-96
297817430	377	hypothetical protein ARALYDRAFT_486593 [	0.950	0.819	0.572	1e-95
6850885	362	putative protein [Arabidopsis thaliana]	0.873	0.784	0.613	9e-95
301133592	363	C3HC4 type zinc finger protein [Brassica	0.904	0.809	0.572	7e-93
224063987	378	predicted protein [Populus trichocarpa]	0.950	0.817	0.595	1e-92
225453718	382	PREDICTED: E3 ubiquitin-protein ligase A	0.950	0.808	0.615	2e-92
225453720	365	PREDICTED: E3 ubiquitin-protein ligase A	0.935	0.832	0.617	5e-90
297824629	381	hypothetical protein ARALYDRAFT_322232 [	0.904	0.771	0.579	6e-88

>gi|449432181|ref|XP_004133878.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus] gi|449480146|ref|XP_004155812.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 246/327 (75%), Gaps = 15/327 (4%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           P  A + SPLL HS+ + L RSR  +RR P PLRGA  RLLRRASGR++MLREPSVRVRE
Sbjct: 11  PFRAVDNSPLLGHSVTNGLFRSRGFIRRSPQPLRGAV-RLLRRASGRQMMLREPSVRVRE 69

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQLEERQS WAYS+PII+LD+LWNL FVI++F VLG+S +EKP VPLR  I+GYALQ
Sbjct: 70  TAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTSEKPSVPLRFWIIGYALQ 129

Query: 126 CLFHVFCVSLEFKRRRRGEGVV----FGDSVSGSSSTTVTGDE------EERFHGENDSS 175
           C+ H+ CV++E+KRRR            D  SG  S +V+G +      E+  + +  S+
Sbjct: 130 CIIHMSCVAVEYKRRRSTREPTGLDRNSDWTSGEDSNSVSGSDGDDYATEQTVNEDESSN 189

Query: 176 VAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVA 235
           + K++ESANT  SF+WW++GFYW+TA G+ LI  SPQLYWL +TFLAFDVVFV+ICV +A
Sbjct: 190 LVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLSITFLAFDVVFVLICVAIA 249

Query: 236 CLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGI 295
           CL+G+A+CCCLPCI+ ILYA+T++EGAT+EEI+RLPK+ F+R   +EKVNG+IQE  GGI
Sbjct: 250 CLVGVAICCCLPCIIAILYAVTDQEGATKEEIERLPKYTFNRTGDVEKVNGDIQESSGGI 309

Query: 296 MIECDTDMPMEHVISEDDAVSLSLCCV 322
           M  CDTD P E  +  +D    S CC+
Sbjct: 310 MSNCDTDAPTERFLRPED----SECCI 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541482|ref|XP_002511805.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223548985|gb|EEF50474.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/323 (61%), Positives = 246/323 (76%), Gaps = 8/323 (2%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P +D+ + SPLL HS+ DHL+RSRR+LRR PPP RGAAARLLRRAS RR+MLREPSVRV
Sbjct: 3   SPQSDSVDMSPLLTHSIADHLLRSRRILRRQPPPFRGAAARLLRRASSRRMMLREPSVRV 62

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQ+ WAYS+PII LDVLWNL FV +   VLG+S+ E+P++PLR+ I+GY+
Sbjct: 63  RENAAEQLEERQTDWAYSKPIIFLDVLWNLAFVGIGVVVLGLSVKEEPQLPLRVWIIGYS 122

Query: 124 LQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEE----ERFHGENDSSVAKN 179
           LQCLFH+ CV  E+KRR  G       S S S S +  GD      E+   + D+ V K 
Sbjct: 123 LQCLFHIGCVIFEYKRRLFGTSARLEASDSTSVSESDGGDSVDDGVEQRGNDGDTCVVKQ 182

Query: 180 LESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIG 239
           LESANT  SF+WWIVGFYW+TA G+ L + SPQLYWLC+TFLAFDV+FV+IC+ VACLIG
Sbjct: 183 LESANTMFSFIWWIVGFYWVTAGGQNLTNDSPQLYWLCITFLAFDVIFVIICIAVACLIG 242

Query: 240 IAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIEC 299
           +A+CCCLPCI+GILYA+T+REGAT+EEI++LP +KF RI   EKVN + Q  FGG+M EC
Sbjct: 243 LAICCCLPCIIGILYAMTDREGATQEEIEQLPMYKFRRIGDFEKVNADFQATFGGMMTEC 302

Query: 300 DTDMPMEHVISEDDAVSLSLCCV 322
           + D P E  +S +DA     CC+
Sbjct: 303 EIDTPTERRLSHEDAE----CCI 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411876|ref|NP_567110.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|16648921|gb|AAL24312.1| putative protein [Arabidopsis thaliana] gi|17978715|gb|AAL47351.1| putative protein [Arabidopsis thaliana] gi|332646647|gb|AEE80168.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 186/325 (57%), Positives = 227/325 (69%), Gaps = 16/325 (4%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P  D  + SPLL  +  +    S+        P+RGAA+RLLRRAS RR+MLREPSVRV
Sbjct: 12  SPTTDTMDASPLLGRNRRNRPRSSQ--------PIRGAASRLLRRASNRRMMLREPSVRV 63

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS WAYS+PIIVLD+LWN +FVIV+ A+LG S +E P+VPLRL I+GY 
Sbjct: 64  REVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRLWIIGYN 123

Query: 124 LQCLFHVFCVSLEFKRRR-------RGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSV 176
           +QCLFHV CV  E+KRRR        GE     +S+SGS   +           ++ +S 
Sbjct: 124 VQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTDDDDHGTSF 183

Query: 177 AKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC 236
            K+LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+ICV VA 
Sbjct: 184 TKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVAS 243

Query: 237 LIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIM 296
           LIGIAVCCCLPCI+ ILYAL ++EGA +EEI+RL KFKF  +   EKVNGEI+E  GGIM
Sbjct: 244 LIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEKVNGEIRETQGGIM 303

Query: 297 IECDTDMPMEHV-ISEDDAVSLSLC 320
              DT+   E + +SED   S+ LC
Sbjct: 304 TGLDTESQTERMLLSEDAECSICLC 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817430|ref|XP_002876598.1| hypothetical protein ARALYDRAFT_486593 [Arabidopsis lyrata subsp. lyrata] gi|297322436|gb|EFH52857.1| hypothetical protein ARALYDRAFT_486593 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 185/323 (57%), Positives = 224/323 (69%), Gaps = 14/323 (4%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P  D  + SPLL  +  +    S+        PLRGAA+RLLRRAS RR+MLREPSVRV
Sbjct: 12  SPATDTMDVSPLLGRNRRNRPRSSQ--------PLRGAASRLLRRASNRRMMLREPSVRV 63

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS WAYS+PIIVLD+LWN VFVIV+ A+LG S  E P+VPLRL I+GY 
Sbjct: 64  REVAAEQLEERQSQWAYSKPIIVLDILWNFVFVIVSIAILGFSSEEDPDVPLRLWIIGYN 123

Query: 124 LQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERF-----HGENDSSVAK 178
            QCL HV CV  E+KRRR       G+  S   S + + DE + +       ++ +S  K
Sbjct: 124 FQCLLHVGCVIAEYKRRREANSPPSGEDSSNHESLSGSDDESDGYSINDTDDDHGTSFTK 183

Query: 179 NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
           +LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+ICV VA LI
Sbjct: 184 HLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVASLI 243

Query: 239 GIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIE 298
           GIAVCCCLPCI+ ILYAL ++EGA +EEI+RL KFKF  +   EKVNGEI+E  GGIM  
Sbjct: 244 GIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLVVKNSEKVNGEIRETQGGIMTG 303

Query: 299 CDTDMPMEHVISEDDA-VSLSLC 320
              +   E V+S +DA  S+ LC
Sbjct: 304 LGAESQTERVLSSEDAECSICLC 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6850885|emb|CAB71048.1| putative protein [Arabidopsis thaliana]

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 179/292 (61%), Positives = 215/292 (73%), Gaps = 8/292 (2%)

Query: 37  PLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFV 96
           P+RGAA+RLLRRAS RR+MLREPSVRVRE AAEQLEERQS WAYS+PIIVLD+LWN +FV
Sbjct: 20  PIRGAASRLLRRASNRRMMLREPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFV 79

Query: 97  IVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR-------RGEGVVFG 149
           IV+ A+LG S +E P+VPLRL I+GY +QCLFHV CV  E+KRRR        GE     
Sbjct: 80  IVSIAILGFSSDEDPDVPLRLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNH 139

Query: 150 DSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISC 209
           +S+SGS   +           ++ +S  K+LESANT  SF+WWI+GFYW+TA  E L   
Sbjct: 140 ESLSGSEDESDGYSINNTDDDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQS 199

Query: 210 SPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDR 269
           SPQLYWLCV FLAFDV+FV+ICV VA LIGIAVCCCLPCI+ ILYAL ++EGA +EEI+R
Sbjct: 200 SPQLYWLCVAFLAFDVMFVVICVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIER 259

Query: 270 LPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHV-ISEDDAVSLSLC 320
           L KFKF  +   EKVNGEI+E  GGIM   DT+   E + +SED   S+ LC
Sbjct: 260 LLKFKFLTVKNSEKVNGEIRETQGGIMTGLDTESQTERMLLSEDAECSICLC 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301133592|gb|ADK63418.1| C3HC4 type zinc finger protein [Brassica rapa]

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 182/318 (57%), Positives = 217/318 (68%), Gaps = 24/318 (7%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           PA    +SPLL  +            RRP  PLRGAA+RLLRRAS R +MLRE SVRVRE
Sbjct: 15  PATDDASSPLLNRN------------RRPSQPLRGAASRLLRRASSRGMMLRESSVRVRE 62

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQ+EERQS WAYS+P+IVLDVLWNL FV V   V   S  E P  PLR  IVGY LQ
Sbjct: 63  TAAEQIEERQSEWAYSKPVIVLDVLWNLAFVFVTVGVSWFSSEEDPRAPLRFWIVGYNLQ 122

Query: 126 CLFHVFCVSLEFKRRRRGEGVVFG-DSVSGSSSTTVTGDEEERFHGENDSSVAKNLESAN 184
           CL H+ CV  E++RR     +  G  SV GSS     G E      E+ +SVAK++ES N
Sbjct: 123 CLIHIACVIAEYRRRESNRDLDSGLSSVQGSSDGY--GAE-----IESGNSVAKHIESTN 175

Query: 185 TFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCC 244
              SF+WW++GFYW+TA  E L   SPQLYWLCV FLAFDV+FV++CV VACLIGIAVCC
Sbjct: 176 AIFSFVWWVIGFYWVTADAEELAQSSPQLYWLCVAFLAFDVIFVVLCVAVACLIGIAVCC 235

Query: 245 CLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMP 304
           CLPCI+ +LYAL +REGA++EEI++LPKFKF  +   EKVNGEI+E  GGIM +   D P
Sbjct: 236 CLPCIIAVLYALADREGASDEEIEKLPKFKFLTVRNSEKVNGEIRETRGGIMTQLGVDFP 295

Query: 305 MEHVISEDDAVSLSLCCV 322
            E V+S D+A     CC+
Sbjct: 296 SERVLSSDEAE----CCI 309

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063987|ref|XP_002301335.1| predicted protein [Populus trichocarpa] gi|222843061|gb|EEE80608.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 241/324 (74%), Gaps = 15/324 (4%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P +DA ++SPLLAHS+ +HL+RSRRLLRRPP  LRGAAAR+LRRAS RR+MLREPSVRV
Sbjct: 11  SPQSDAIDSSPLLAHSIANHLLRSRRLLRRPPQ-LRGAAARILRRASSRRMMLREPSVRV 69

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS W YS+P++V+DVLW+L  VI+A  VLG+S+ EKP VP R  IV Y 
Sbjct: 70  RENAAEQLEERQSDWGYSKPVVVIDVLWSLAIVIIAVGVLGLSLEEKPRVPFRAWIVAYI 129

Query: 124 LQCLFHVFCVSLEFKRRR----RGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKN 179
           L C  HV CV +E+++RR    R  G++  DS  G S    T   E    G+N +SVAK 
Sbjct: 130 LLCSCHVVCVVVEYRKRRNLGLRESGILSSDS--GDSLDFSTQQSEN--DGQN-TSVAKR 184

Query: 180 LESANTFLSFLWWIVGFYWITASG-ETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
           +ESA T  S +WWI+GFYW+T +G + +   SPQLYWLC+ FLA D +FV+IC+ VACLI
Sbjct: 185 VESAMTTFSIIWWIIGFYWVTTAGRQNVAKDSPQLYWLCIAFLAADTLFVIICIAVACLI 244

Query: 239 GIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIE 298
           GIAVCC LPCI+GILYA+ ++EGAT+EEIDRL K+KF RI   EKVN E QE FGG+M E
Sbjct: 245 GIAVCCFLPCIIGILYAMADQEGATKEEIDRLLKYKFHRIGNCEKVNDESQESFGGMMTE 304

Query: 299 CDTDMPMEHVISEDDAVSLSLCCV 322
           CDTD P+E  +S +D    + CC+
Sbjct: 305 CDTDTPIERALSRED----TECCI 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453718|ref|XP_002271651.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1 [Vitis vinifera]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/328 (61%), Positives = 248/328 (75%), Gaps = 19/328 (5%)

Query: 7   ADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRET 66
           ADA +T+PLL  S+ D ++RSRRL+RRPP  LRGAA R LRRAS RR+M REPS+RVRET
Sbjct: 8   ADATDTTPLLHASVSDQILRSRRLIRRPPS-LRGAA-RFLRRASSRRIM-REPSMRVRET 64

Query: 67  AAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQC 126
           AAEQLEERQS WAYS+PI++LD++WNL FV+VA  VL +S +E P  PLRL I+GY LQC
Sbjct: 65  AAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTPLRLWIIGYGLQC 124

Query: 127 LFHVFCVSLEFKRRRR----GEGVVFGDSVSGSSSTTVTGDE--------EERFHGENDS 174
           + H+ CV +E+KRRRR    G     G   SG  S++   DE        E R   E+++
Sbjct: 125 VLHMVCVCVEYKRRRRLVSSGALERSGGWGSGHLSSSSGSDEGDPIDYRVEVRNRDEDET 184

Query: 175 SVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGV 234
           SVAK+LESANT  SF+WWI+GFYW++A G+ L   SPQLYWLC+ FLAFDV FV+ICV V
Sbjct: 185 SVAKHLESANTMFSFIWWIIGFYWVSAGGQDLTRDSPQLYWLCIVFLAFDVFFVVICVAV 244

Query: 235 ACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGG 294
           AC+IGIAVCCCLPCI+ ILY + ++EGAT+EEI+RLPK+KF RI   EK+NGEIQE FGG
Sbjct: 245 ACVIGIAVCCCLPCIIAILYTVADQEGATKEEIERLPKYKFRRIGESEKLNGEIQESFGG 304

Query: 295 IMIECDTDMPMEHVISEDDAVSLSLCCV 322
           IM ECDTD PMEHVI ++DA     CC+
Sbjct: 305 IMTECDTDTPMEHVIPQEDAE----CCI 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453720|ref|XP_002271690.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2 [Vitis vinifera]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 195/316 (61%), Positives = 237/316 (75%), Gaps = 12/316 (3%)

Query: 7   ADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRET 66
           ADA +T+PLL  S+ D ++RSRRL+RRPP  LRGAA R LRRAS RR+M REPS+RVRET
Sbjct: 8   ADATDTTPLLHASVSDQILRSRRLIRRPPS-LRGAA-RFLRRASSRRIM-REPSMRVRET 64

Query: 67  AAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQC 126
           AAEQLEERQS WAYS+PI++LD++WNL FV+VA  VL +S +E P  PLRL I+GY LQC
Sbjct: 65  AAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTPLRLWIIGYGLQC 124

Query: 127 LFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTF 186
           + H+ CV +E+KRRRR        S +   S            G    SVAK+LESANT 
Sbjct: 125 VLHMVCVCVEYKRRRR-----LVSSGALERSGGWGSGHLSSSSGNFSCSVAKHLESANTM 179

Query: 187 LSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCL 246
            SF+WWI+GFYW++A G+ L   SPQLYWLC+ FLAFDV FV+ICV VAC+IGIAVCCCL
Sbjct: 180 FSFIWWIIGFYWVSAGGQDLTRDSPQLYWLCIVFLAFDVFFVVICVAVACVIGIAVCCCL 239

Query: 247 PCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPME 306
           PCI+ ILY + ++EGAT+EEI+RLPK+KF RI   EK+NGEIQE FGGIM ECDTD PME
Sbjct: 240 PCIIAILYTVADQEGATKEEIERLPKYKFRRIGESEKLNGEIQESFGGIMTECDTDTPME 299

Query: 307 HVISEDDAVSLSLCCV 322
           HVI ++DA     CC+
Sbjct: 300 HVIPQEDAE----CCI 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824629|ref|XP_002880197.1| hypothetical protein ARALYDRAFT_322232 [Arabidopsis lyrata subsp. lyrata] gi|297326036|gb|EFH56456.1| hypothetical protein ARALYDRAFT_322232 [Arabidopsis lyrata subsp. lyrata]

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 182/314 (57%), Positives = 217/314 (69%), Gaps = 20/314 (6%)

Query: 24  LIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRP 83
           L R+RR L R   PLRGAA+RLLRRAS RR+MLRE SVRVRE AAEQ+EERQS WAYS+P
Sbjct: 24  LNRNRRALSRSSQPLRGAASRLLRRASSRRMMLRESSVRVRENAAEQIEERQSEWAYSKP 83

Query: 84  IIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG 143
           +IVLDVLWNL FV V  A+LG S +E P VPLR  I+GY LQCLFHV CV  E++RR R 
Sbjct: 84  VIVLDVLWNLAFVFVTIAILGFSSDENPHVPLRFWIIGYNLQCLFHVGCVIAEYRRRHRR 143

Query: 144 EGVVFGDS-------------VSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFL 190
           +   F +                 S    +  D +     E  +S+AK+LESAN   SF+
Sbjct: 144 QSDDFPNEDSVLGSSSSHGSSEDESDDYAIVDDSQ----IEPGTSLAKHLESANAIFSFV 199

Query: 191 WWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCIL 250
           WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV++CV VACLIGIAVCCCLPCI+
Sbjct: 200 WWIIGFYWVTADSEELSQSSPQLYWLCVAFLAFDVIFVVLCVAVACLIGIAVCCCLPCII 259

Query: 251 GILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHVIS 310
            +LYAL +R GA++EEI+RLPKFKF  +   EKVNGEI+E  GGIM +   D P E V+S
Sbjct: 260 AVLYALADRGGASDEEIERLPKFKFLTVRNSEKVNGEIRETHGGIMTQLGVDSPTERVLS 319

Query: 311 EDDAVSLSLCCVLC 324
            D+A     C  LC
Sbjct: 320 SDEA---ECCICLC 330

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.809	0.693	0.579	2.3e-78
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.796	0.664	0.513	9.3e-75
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.446	0.355	0.546	8.6e-73
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.803	0.685	0.496	7.7e-71
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.763	0.723	0.439	1.8e-55
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.763	0.690	0.396	2e-49
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.356	0.256	0.387	8.1e-17
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.350	0.280	0.35	1e-12
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.569	0.539	0.277	8.5e-09
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.566	0.549	0.236	1e-08

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 157/271 (57%), Positives = 187/271 (69%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPSVRVRE AAEQLEERQS WAYS+PIIVLD+LWN +FVIV+ A+LG S +E P+VPLRL
Sbjct:    58 EPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRL 117

Query:   118 RIVGYALQCLFHVFCVSLEFKRRRRXXX---XXXXXXXXXXXXXXXXXXXXXRFHGEND- 173
              I+GY +QCLFHV CV  E+KRRR                              +  +D 
Sbjct:   118 WIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTDDD 177

Query:   174 ---SSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMI 230
                +S  K+LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+I
Sbjct:   178 DHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVI 237

Query:   231 CVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQE 290
             CV VA LIGIAVCCCLPCI+ ILYAL ++EGA +EEI+RL KFKF  +   EKVNGEI+E
Sbjct:   238 CVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEKVNGEIRE 297

Query:   291 PFGGIMIECDTDMPMEHVI-SEDDAVSLSLC 320
               GGIM   DT+   E ++ SED   S+ LC
Sbjct:   298 TQGGIMTGLDTESQTERMLLSEDAECSICLC 328

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 138/269 (51%), Positives = 189/269 (70%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPS+ VRETAAEQLEERQS WAYS+P++ LD+LWNL FV +  AVL +S +EKP +PLR+
Sbjct:    83 EPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRV 142

Query:   118 RIVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSS-V 176
              +VGY +QC  H+ CV +E++RRRR                        +     ++S  
Sbjct:   143 WVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNP 202

Query:   177 AKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC 236
             AK+LESANT  SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC
Sbjct:   203 AKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALAC 262

Query:   237 LIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIM 296
             +IG+AVCCCLPCI+ ILYA+ ++EGA++ +ID++PKF+F++   +EK++G+ +    GIM
Sbjct:   263 VIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIM 318

Query:   297 IECDTDMPMEHVISEDDAVSLSLCCV-LC 324
              EC TD P+E  +S +DA     CC+ LC
Sbjct:   319 TECGTDSPIERSLSPEDAE----CCICLC 343

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 82/150 (54%), Positives = 112/150 (74%)

Query:   174 SSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVG 233
             SSVAK+LESANT  SF+WWI+GFYW++A G+ L   SP++YWL + FL FDV FV+ CV 
Sbjct:   210 SSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVA 269

Query:   234 VACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRI-DGLEKVNGEIQEPF 292
             +AC+IGIAVCCCLPCI+ +LYA+ ++EGA++E+I++L KFKF ++ D  +  N E Q   
Sbjct:   270 LACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTT 329

Query:   293 GGIMIECDTDMPMEHVISEDDAVSLSLCCV 322
              GIM EC TD P+EH + ++DA     CC+
Sbjct:   330 EGIMTECGTDSPIEHTLLQEDAE----CCI 355

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 141/284 (49%), Positives = 189/284 (66%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA AVL +S +E P +PLR+
Sbjct:    48 EPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRV 107

Query:   118 RIVGYALQCLFHVFCVSLEFKRR--RRXXXXXXXXXXXXXXXXXX---------XXXXXX 166
              I+GY LQC+ H+ CV +E++RR  RR                                 
Sbjct:   108 WIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDE 167

Query:   167 RFH--G--ENDS-SVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFL 221
             R+   G  EN++ S AK+LESANT +SF+WW++GFYW+++ G+ L   SPQLYWLC+ FL
Sbjct:   168 RYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFL 227

Query:   222 AFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGL 281
              FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+EGA++E+ID+L KFKF ++   
Sbjct:   228 GFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDT 287

Query:   282 EK--VNGEI-QEPFGGIMIECDTDMPMEHVISEDDAVSLSLCCV 322
              K  V+ E  Q   GG+M EC TD P+EH +  +DA     CC+
Sbjct:   288 MKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAE----CCI 327

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 117/266 (43%), Positives = 159/266 (59%)

Query:    60 SVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRI 119
             S+ VRETAA++LEER++ W YS+P++ LD+LWN  FV+VA  +L V   EKP VP+R+ I
Sbjct:    44 SMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWI 103

Query:   120 VGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKN 179
              GYA+QCL HV  V LEF++R                          RF         K 
Sbjct:   104 CGYAIQCLVHVVLVWLEFRKRNARSRPGDLEAAQATNQDSEDEDNDERFLS------TKT 157

Query:   180 LESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIG 239
              ES NT +SF+WWIVGFYW+ + G+ L+  +  LYWL   FLAFDV F + CV +ACLIG
Sbjct:   158 CESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIG 217

Query:   240 IAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIEC 299
             IA+CCCLPCI+ +LYA+  +EGA+E ++  LPK++F  ++     N E Q   GG MI  
Sbjct:   218 IALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFHTMN-----NDEKQSDGGGKMIPV 272

Query:   300 DT---DMPMEHVISEDDAVSLSLCCV 322
             D    ++  E V+  +DA     CC+
Sbjct:   273 DAASENLGNERVLLPEDAD----CCI 294

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 100/252 (39%), Positives = 138/252 (54%)

Query:    59 PSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLR 118
             PS+ VRETAA  LEER+  W YS+P++  D+LWN   V+ +  +L  ++ E+P  P+R+ 
Sbjct:    52 PSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVW 111

Query:   119 IVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAK 178
             I  Y LQCLFHV  V  E+ RR                                  S  K
Sbjct:   112 ICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVK 171

Query:   179 NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
               ES NT +SF+WWI+GFYW+   G+ L+  +P LYWL V FLA DV F + CV +ACL+
Sbjct:   172 RCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLV 231

Query:   239 GIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEK-VNGE---IQEPFGG 294
             GIA+CCCLPCI+ +LYA+   EG +E E+  LP +KF      EK + G    +  P  G
Sbjct:   232 GIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPING 291

Query:   295 IMIECDTDMPME 306
             + +  +  +  E
Sbjct:   292 LCLATERTLLAE 303

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
 Identities = 55/142 (38%), Positives = 75/142 (52%)

Query:   190 LWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC--LIGIAVCCCLP 247
             +W++VG  WI   G +  + +P LY LC+ FL F       C+G A   ++   +CCCLP
Sbjct:   241 VWFVVGNVWIFG-GHSSAAEAPNLYRLCLVFLTFS------CIGYAMPFILCTTICCCLP 293

Query:   248 CILGIL-YA--LTEREGATEEEIDRLPKFKF----SRIDGLEKVNGEIQEPFGGIMIECD 300
             CI+ IL Y   LT+  GAT E I+ LP  KF    SR +G +  NG      GG+ +   
Sbjct:   294 CIISILGYREDLTQPRGATPESINALPTHKFKLKKSRSNGDD--NGSSTSE-GGV-VAAG 349

Query:   301 TDMPMEHVISEDDAVSLSLCCV 322
             TD   E  IS +DAV    CC+
Sbjct:   350 TDN--ERAISGEDAV----CCI 365

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 49/140 (35%), Positives = 73/140 (52%)

Query:   190 LWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC--LIGIAVCCCLP 247
             +W++VG  WI   G +  S SP+LY LC+ FL F       C+G A   ++   +CCCLP
Sbjct:   236 VWFVVGNVWIFG-GHSSPSDSPKLYRLCIAFLTFS------CIGYAMPFILCATICCCLP 288

Query:   248 CILGIL---YALTEREGATEEEIDRLPKFKF---SRIDGLE-KVNGEIQEPFGGIMIECD 300
             C++ +L      ++  GAT E I+ LP ++F   SR D LE    GE     GG ++   
Sbjct:   289 CLISVLGFRENFSQTRGATAEAINALPVYRFKSKSRND-LEFSEEGE-----GGFLL--- 339

Query:   301 TDMPMEHVISEDDAVSLSLC 320
                  + +IS +DA S  +C
Sbjct:   340 LGSQKKRLISGEDA-SCCIC 358

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 58/209 (27%), Positives = 93/209 (44%)

Query:    76 SYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSL 135
             S W  S  I +L  L      ++ F  L +S  E+P  P+RL I GY + CL ++    L
Sbjct:    89 STWMMSELIALLVQL-----TVITFT-LAISKEERPIWPVRLWITGYDVGCLLNLM---L 139

Query:   136 EFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKNLESANTFLSF-LWWIV 194
              + R R+                        R   E  SS   N    +  L F +W+++
Sbjct:   140 LYGRYRQLDINQGNGFVLGDVEQQQ------RGREETRSSHLMNKCRTSLELFFAIWFVI 193

Query:   195 GFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGIL- 253
             G  W+  S       +P+L+ LCV+ LA++     IC     L+ + +CC +P I  +L 
Sbjct:   194 GNVWVFDSRFGSFHHAPKLHVLCVSLLAWNA----ICYSFPFLLFLFLCCLVPLISSLLG 249

Query:   254 YAL---TEREGATEEEIDRLPKFKFSRID 279
             Y +   +    A++++I  LP +KF RID
Sbjct:   250 YNMNMGSSDRAASDDQISSLPSWKFKRID 278

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 47/199 (23%), Positives = 91/199 (45%)

Query:    85 IVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRXX 144
             +V +++  L+ + V  + L +S NE+P  P+RL I GY + CL ++  +   + R++   
Sbjct:    88 MVSELIALLLQITVITSTLALSKNERPVWPMRLWITGYNVGCLLNLMLLYGRY-RQQDTS 146

Query:   145 XXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
                                     H  N     K   S   F + +W+++G  W+  S  
Sbjct:   147 HENAFSFGDIEQQQRSREETTRCSHLMN-----KCRTSLELFFA-IWFVIGNVWVFDSRF 200

Query:   205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGIL-YAL---TERE 260
                  +P L+ LC++ LA++     +C     L+ + +CC +P +   L Y +   +  +
Sbjct:   201 GSFHYAPILHVLCISLLAWNA----LCYSFPFLLFLLLCCVVPLVSSFLGYNMNVGSSEK 256

Query:   261 GATEEEIDRLPKFKFSRID 279
             GA++++I  LP +K+  ID
Sbjct:   257 GASDDQISSLPSWKYKLID 275

GO:0008270 "zinc ion binding" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT3G61180 zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN- protein binding, zinc ion binding; LOCATED IN- plasma membrane; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro-IPR013083); BEST Arabidopsis thaliana protein match is- zinc finger (C3HC4-type RING finger) family protein (TAIR-AT4G11680.1); Has 6278 Blast hits to 6260 proteins in 205 species- Archae - 0; Bacteria - 6; Metazoa - 2235; [...] (379 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 43/346 (12%), Positives = 88/346 (25%), Gaps = 135/346 (39%)

Query: 6   PADAAETSPLL----AHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSV 61
           P +   T+P      A S+ D L                      +  +  +L       
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW----------------KHVNCDKLT------ 356

Query: 62  RVRETAAEQL---EERQSYWAYSR-------PIIVLDVLWN-----LVFVIVAFAVLGVS 106
            + E++   L   E R+ +   S        P I+L ++W       V V+V        
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 107 INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEE 166
           + ++P+    + I   ++          LE K +                      + E 
Sbjct: 417 VEKQPK-ESTISI--PSIY---------LELKVKL---------------------ENEY 443

Query: 167 RFHGENDSSVAKNLESANTFLSFLWWIVG-------FYW------ITASGETLISCSPQL 213
             H          ++  N   +F    +        FY               ++    +
Sbjct: 444 ALH-------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 214 YWLCVTFLAFDVVFV---MICVGVACLIGIAVCCCLPCILGIL-----YA--LTEREGAT 263
           +         D  F+   +     A             IL  L     Y   + + +   
Sbjct: 497 F--------LDFRFLEQKIRHDSTA-------WNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 264 EEEIDRLPKF-----------KFSRIDGLEKVNGEIQEPFGGIMIE 298
           E  ++ +  F           K++ +     +   +      I  E
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL-----LRIALMAEDEAIFEE 582

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	80.8

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=80.80  E-value=0.64  Score=35.47  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             cCCCCHHHhhcCCCcceeecC
Q 020539          259 REGATEEEIDRLPKFKFSRID  279 (325)
Q Consensus       259 ~eGAS~e~I~~LP~yKFk~~~  279 (325)
                      ..|+|++.|++||.++++...
T Consensus        14 ~~~~s~~~i~~lp~~~~~~~~   34 (91)
T 2l0b_A           14 NPPASKESIDALPEILVTEDH   34 (91)
T ss_dssp             CCCCCHHHHHTSCEEECCTTC
T ss_pred             CCCCCHHHHHhCCCeeecccc
Confidence            689999999999999987543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00