Citrus Sinensis ID: 020581

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MERRHHSQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEAN
Secondary Structure (PSIPRED)
cccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccHHHHHHHHHHHcccHHEEcccccccccHHHHHHHHccHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHEcccccccHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
merrhhsqshsqrqqrrnhfssssssssnqsrsnnrfsfpksssssssssandVRDRRRETQEEKQEEaivgtcpfmcpeaERLQRQRLRDLAVFErlhgdprnsspaLAVKKFCRTMsakevrasdvrplpvLEETLNYLLSLldstehpfevIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVIShhklrsscssssisplhyLNLEQLTKALTSLYNLyeanrsskpihekeaEFRSFYVLLHldsngqpvgeSLSLWFrhvpspiiksKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIepyidean
Flexible Loop (DISEMBL)
merrhhsqshsqrqqrrnhfssssssssnqsrsnnrfsfpksssssssssandvrDRRRETqeekqeeaivgtcpfmcPEAERLQRQRLRDLAVFErlhgdprnsspalaVKKFCRtmsakevrasdvrplpvLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEAN
Low Complexity Region (SEG)
MErrhhsqshsqrqqrrnhfssssssssnqsrsnnrfsfpksssssssssANDVrdrrretqeekqeeAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVleetlnyllslldsteHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRsscssssisPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEAN
Disordered region (IsUnstruct)
*********************************************************************IVGTCPFMCPEAERLQRQRLRDLAVFERL**********LAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEAN*********EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYI****
Disordered Region (DISOPRED)
********************************************************************AIVGTCPFMCPEAERLQRQRLRDLAVFER**GD*RNSSPALAVKKFCRT***KEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEA*
Disordered Region (DISEMBL)
********************************************************************AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISH***********ISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEAN
Disordered Region (DISPRO)
*******************************************SSSSSSSANDVRDRRRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEAN
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERRHHSQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
O60318	1980	80 kDa MCM3-associated pr	yes	no	0.799	0.130	0.324	1e-27
Q9WUU9	1971	80 kDa MCM3-associated pr	yes	no	0.799	0.131	0.324	3e-27
O74889	1024	SAC3 family protein 1 OS=	yes	no	0.574	0.181	0.39	1e-24
Q9USI4	458	SAC3 family protein 2 OS=	no	no	0.740	0.524	0.324	1e-19
Q9U3V9	1370	Protein xmas-2 OS=Drosoph	yes	no	0.787	0.186	0.305	1e-19
P46674	1301	Nuclear mRNA export prote	yes	no	0.546	0.136	0.352	4e-16
A6NKF1	404	SAC3 domain-containing pr	no	no	0.737	0.591	0.293	3e-11
A6H687	427	SAC3 domain-containing pr	no	no	0.919	0.697	0.243	0.0002

>sp|O60318|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 143/277 (51%), Gaps = 18/277 (6%)

Query: 53  DVRDR-----RRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSP 107
           D RDR     R +  +  +    VGTC  MCPE ER  R+    L+VFE + G  +    
Sbjct: 611 DQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDH- 669

Query: 108 ALAVKKFCRTMSAK-EVRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRS 165
           A AVK++ R+ + + E    ++RPLPVL  T++YL++ ++D  E      +DFV++RTR 
Sbjct: 670 AAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRG 729

Query: 166 VRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSL 225
           +R+D+  Q++ +   +++ EK  +FH+   H +   C     S    +N E +TK L SL
Sbjct: 730 IRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTKCLQSL 786

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFA 285
             +Y+  R+       EAEF+ + VLL L+      G+ L    +  P+ +  S E+ FA
Sbjct: 787 KEMYQDLRNKGVFCASEAEFQGYNVLLSLNK-----GDILREVQQFHPA-VRNSSEVKFA 840

Query: 286 RQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDE 322
            QA       N+ RF   V + ASYL  C++  Y  +
Sbjct: 841 VQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFSQ 876

May be involved in the nuclear localization pathway of MCM3.
Homo sapiens (taxid: 9606)

>sp|Q9WUU9|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 144/277 (51%), Gaps = 18/277 (6%)

Query: 53  DVRDR-----RRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSP 107
           D RDR     R +  +  +  A VGTCP MCPE ER  R+    L+VFE + G  +    
Sbjct: 604 DQRDRIMRQARVKRTDLDKARAFVGTCPDMCPEKERYLRETRSQLSVFEVVPGTDQVDH- 662

Query: 108 ALAVKKFCRTMS-AKEVRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRS 165
           A AVK++ R+ +  +E    ++RP  VL  T++YL++ ++D  E      +DFV++RTR 
Sbjct: 663 AAAVKEYSRSSADQEEPLPHELRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRG 722

Query: 166 VRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSL 225
           +R+D+  Q++ +   +++ EK  +FH+   H +   C     S    +N E +TK L SL
Sbjct: 723 IRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTKCLQSL 779

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFA 285
             +Y+  R+       EAEF+ + VLL+L+      G+ L    +  P  +  S E+ FA
Sbjct: 780 KEMYQDLRNKGVFCASEAEFQGYNVLLNLNK-----GDILREVQQFHPD-VRNSPEVNFA 833

Query: 286 RQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDE 322
            QA       N+ RF   V + ASYL  C++  Y ++
Sbjct: 834 VQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFNQ 869

May be involved in the nuclear localization pathway of MCM3.

Mus musculus (taxid: 10090)

>sp|O74889|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 14/200 (7%)

Query: 61  TQEEKQEEAI--VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNS--SPALAVKKFCR 116
           T+  + +EA+  VGTCP MCPE ER QR+   +L   ER   +P        LAVK F R
Sbjct: 93  TKPRQLDEAVTFVGTCPDMCPEYEREQREYQNNL---ERWEINPETGRVDKNLAVKAFHR 149

Query: 117 TMSAKE-VRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNI 175
             +  E    SDVRP PVL+++L+YL+  +     P E  H FV DRTRS+RQD  +QN 
Sbjct: 150 PAAGNEQALPSDVRPPPVLKKSLDYLVDKIVCGPDPLENTHFFVRDRTRSIRQDFTLQNC 209

Query: 176 VNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKA-LTSLYNLYEANRS 234
            +  A+   E+I ++H++  H+L   C     S      +EQL K  L SL   Y+  R 
Sbjct: 210 RDLDAVACHERIARYHILCIHQL---CEKKQFSAQQ--EVEQLRKGILQSLCEFYDDLRK 264

Query: 235 SKPIHEKEAEFRSFYVLLHL 254
            K     E EFRS+ ++ HL
Sbjct: 265 VKIRCPNEPEFRSYAIITHL 284

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9USI4|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC70.06 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 138/271 (50%), Gaps = 31/271 (11%)

Query: 27  SSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE---------AIVGTCPFM 77
           S ++S S  R +     S++  ++   ++ +R++ QE  Q +          +VGTC  M
Sbjct: 18  SLDRSDSTKRAARAARFSTTLDANFQALKKKRKDEQESFQAKQSTNWEKSSVLVGTCRQM 77

Query: 78  CPEAERLQRQRLRDLAVFERLHGDP--RNSSPALAVKKFCRTMSAKE-VRASDVRPLPVL 134
           CPE E  +R+    +  +E    DP  + + P+LAVK + R  + K  +  SDVRP  +L
Sbjct: 78  CPEFELEERKLQHAIHPYEL---DPVSKQAHPSLAVKAYHRPAAGKGPILPSDVRPPSIL 134

Query: 135 EETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVI 193
           + T++YL   +LD   +     H FV DRTR+VRQD  +Q+  +  ++   E I +FH+I
Sbjct: 135 KNTIDYLFKVILD--RYSLREAHAFVRDRTRAVRQDFSVQSSFSQDSVYCHELIARFHII 192

Query: 194 SHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYN---LYEANRSSKPIHEKEAEFRSFYV 250
           S H+L  + + S         +EQL+K++  LY    LY+     K     EAEFR++ V
Sbjct: 193 SLHELAHTPNFS-----RQQEIEQLSKSMEILYTLGQLYDYMHLRKEHCTHEAEFRAYMV 247

Query: 251 LLHLDSNGQP-VGESLSLWFRHV-PSPIIKS 279
           LL L   G P VG     W   V   PI+K+
Sbjct: 248 LLSL---GDPSVGLDTLSWPDFVFKKPIVKT 275

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 143/298 (47%), Gaps = 43/298 (14%)

Query: 44  SSSSSSSANDVRDR--RRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGD 101
           +S    S  D RD+  R    + K   A  G C  MCPE ER+ R+  R +A +E   G 
Sbjct: 170 TSEEKFSVLDARDKLLRLNRTQHKLSGATQGHCADMCPEKERVLREFQRQVAYYELQPGS 229

Query: 102 PRNSSPALAVKKFCRTMSAKEVRASDVRPLP-------VLEETLNYLL-SLLDSTE---- 149
                   A+K++ R+ + +E       PLP        L  T++YL+  ++D +E    
Sbjct: 230 DELICHERALKQYSRSSADQET------PLPHELRNETALHMTMSYLMHEIMDISERQDP 283

Query: 150 --HPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSI 207
             H  +  H FV+DRTRS+R+++  Q + +  A+ + E+  +FH+    +L  +  S   
Sbjct: 284 QSHMGDWFH-FVWDRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFD 342

Query: 208 SPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-DSNGQPVGESLS 266
           S    +N E LTK L +L  +Y   R       KEAEFR + VLL+L D+N         
Sbjct: 343 SK---INAENLTKCLQTLKYMYHDLRIKGVPCPKEAEFRGYIVLLNLADAN--------F 391

Query: 267 LW-FRHVPSPIIKSKEMWFARQALRYF---QMGNYRRFLSTVA-AEASYLQYCIIEPY 319
           LW    +P+ +    E+   RQA++++   Q  N+ RF   +A  + SYL  CI+  Y
Sbjct: 392 LWDIGQLPAELQSCPEV---RQAIQFYLALQDTNFVRFFQLLADKDTSYLSACILVNY 446

Required for spermatogenesis, oogenesis and embryogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P46674|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 10/187 (5%)

Query: 68  EAIV--GTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRA 125
           +AIV  GTC  MCP  ER +R     +  +E+   + + +S   A+K F R  +A     
Sbjct: 192 DAIVFQGTCLDMCPTFERSRRNVEYTVYSYEKNQPNDKKASRTKALKVFARPAAAAAPPL 251

Query: 126 -SDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 184
            SDVRP  +L +TL+Y++  L +T    E    F++DR RS+RQD   QN    +A++  
Sbjct: 252 PSDVRPPHILVKTLDYIVDNLLTTLPESE---GFLWDRMRSIRQDFTYQNYSGPEAVDCN 308

Query: 185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAE 244
           E+IV+ H++  H +  S    S+       LEQL K+L +L  +Y+  RSS      EAE
Sbjct: 309 ERIVRIHLLILHIMVKSNVEFSLQQ----ELEQLHKSLITLSEIYDDVRSSGGTCPNEAE 364

Query: 245 FRSFYVL 251
           FR++ +L
Sbjct: 365 FRAYALL 371

Component of the SAC3-THP1 complex, which functions in transcription-coupled mRNA export from the nucleus to the cytoplasm. SAC3-THP1 functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket), by association with components of the nuclear mRNA export machinery (MEX67-MTR2 and SUB2) in the nucleoplasm and the nucleoporin NUP1 at the nuclear basket.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6NKF1|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo sapiens GN=SAC3D1 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 119/266 (44%), Gaps = 27/266 (10%)

Query: 68  EAIVGTCPFMCPEAERLQRQ---RLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKE-V 123
           E  VGTCP MCP AER QR+   RL  L V      DP  + P  AVK++ R  + K   
Sbjct: 51  ELPVGTCPDMCPAAERAQREREHRLHRLEVVPGCRQDPPRADPQRAVKEYSRPAAGKPRP 110

Query: 124 RASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAIN 182
             S +RP  VL  T+ YL   + +S +     +  FV DR R+V  DL +Q   + +A  
Sbjct: 111 PPSQLRPPSVLLATVRYLAGEVAESADIARAEVASFVADRLRAVLLDLALQGAGDAEAAV 170

Query: 183 MFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKE 242
           + E  +   +    +L    +     P+  L   Q+ +   SL   Y   R + P H ++
Sbjct: 171 VLEAALATLLTVVARLGPDAARGPADPV--LLQAQVQEGFGSLRRCY--ARGAGP-HPRQ 225

Query: 243 AEFRSFYVLLHLDSNGQPVGESLSL--WFRHVPSPIIKSKEMWFARQALRYFQMGNYR-- 298
             F+  ++L +L S  + + E L L    R  P P+ K+  +  A      F+ GN    
Sbjct: 226 PAFQGLFLLYNLGSV-EALHEVLQLPAALRACP-PLRKALAVDAA------FREGNAARL 277

Query: 299 -RFLSTVAAEASYLQYCIIEPYIDEA 323
            R L T+     YL  C ++ ++  A
Sbjct: 278 FRLLQTL----PYLPSCAVQCHVGHA 299

Involved in centrosome duplication and mitotic progression.

Homo sapiens (taxid: 9606)

>sp|A6H687|SAC31_MOUSE SAC3 domain-containing protein 1 OS=Mus musculus GN=Sac3d1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 132/325 (40%), Gaps = 27/325 (8%)

Query: 4   RHHSQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQE 63
           R   +S   RQ       +    SS Q  +  RF +P  +  +SS+           T  
Sbjct: 23  RGSGKSRKPRQAAFGQTGARVCPSSPQQDAVPRFRWPGDAECASST----------HTPT 72

Query: 64  EKQEEAIVGTCPFMCP---EAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSA 120
               +  +G CP MCP    A R + +RL  L V     G+   + P   VK++ R  + 
Sbjct: 73  MSGCKLPMGLCPDMCPAAERARRERERRLHRLEVEPGGRGNAPRADPKRTVKEYSRPAAG 132

Query: 121 K-EVRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVND 178
           K     S +RP PVL  T+ YL   +    +     +  FV DR R+VR DL +Q + + 
Sbjct: 133 KPRPPPSLLRPPPVLLATVRYLAGEVAGRGDVSCAEVASFVADRLRAVRLDLSLQGVDDA 192

Query: 179 KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPI 238
            A  + E  +   +    ++R   +  +  P+  L   Q+ +   SL   Y   +   P 
Sbjct: 193 DAATVLEAALATLLAVVARVRPEETRGAADPV--LLQTQVQEGFGSLRRCYARGKGPYP- 249

Query: 239 HEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYR 298
             ++A F+  ++L +L S  + + E L L     P+ +     +  A      F+  N+ 
Sbjct: 250 --RQAAFQGLFLLYNLGSV-EALQEVLQL-----PAALRACPPLQAALAVDAAFREDNHA 301

Query: 299 RFLSTVAAEASYLQYCIIEPYIDEA 323
           R    +     YLQ C ++ +I  A
Sbjct: 302 RLFRLLRT-LPYLQSCAVQEHIGYA 325

Involved in centrosome duplication and mitotic progression.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
224057204	357	predicted protein [Populus trichocarpa]	0.814	0.739	0.713	1e-112
298205116	424	unnamed protein product [Vitis vinifera]	0.978	0.747	0.619	1e-108
359494933	407	PREDICTED: SAC3 family protein 1-like [V	0.888	0.707	0.644	1e-108
255569219	440	leng8 protein, putative [Ricinus communi	0.904	0.665	0.636	1e-107
449458706	427	PREDICTED: SAC3 family protein 1-like [C	0.950	0.721	0.608	1e-107
357515593	403	80 kDa MCM3-associated protein [Medicago	0.959	0.771	0.602	1e-106
225449759	407	PREDICTED: SAC3 family protein 1-like [V	0.787	0.626	0.709	1e-106
296084674	421	unnamed protein product [Vitis vinifera]	0.787	0.605	0.709	1e-106
359494973	407	PREDICTED: SAC3 family protein 1-like [V	0.888	0.707	0.644	1e-106
359494979	421	PREDICTED: SAC3 family protein 1-like [V	0.787	0.605	0.705	1e-105

>gi|224057204|ref|XP_002299171.1| predicted protein [Populus trichocarpa] gi|222846429|gb|EEE83976.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/269 (71%), Positives = 233/269 (86%), Gaps = 5/269 (1%)

Query: 60  ETQEEKQEEA-----IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKF 114
           +T+E+K+ ++     ++GTCPFMCPE+ER QR+RL+DLAVFERLHG+PR +S ALAVKKF
Sbjct: 8   KTEEDKEADSSDFPRLIGTCPFMCPESERSQRERLQDLAVFERLHGNPRKTSQALAVKKF 67

Query: 115 CRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQN 174
           CRT+SAK ++ASDVRPLPVLE+TL YLL+LLDST+HPFEV+HDF+FDRTRS+RQDL MQN
Sbjct: 68  CRTISAKHMQASDVRPLPVLEDTLAYLLNLLDSTDHPFEVVHDFIFDRTRSIRQDLSMQN 127

Query: 175 IVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRS 234
           IV+DK+I M+EK+VKFHVISH KL+   SSS IS +HYLN+EQLTKALTSLYNLY+ANR 
Sbjct: 128 IVDDKSIYMYEKMVKFHVISHLKLQRCRSSSDISSVHYLNMEQLTKALTSLYNLYDANRD 187

Query: 235 SKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQM 294
           S  ++  EAEFRS YVLLHLDSN QP+GESLSLWFR V  PII+SKEM FAR  LR++QM
Sbjct: 188 SGTVYGNEAEFRSLYVLLHLDSNTQPMGESLSLWFRFVLHPIIRSKEMCFARSVLRFYQM 247

Query: 295 GNYRRFLSTVAAEASYLQYCIIEPYIDEA 323
           GNY RF ST++AEASYLQYCI+E YI++ 
Sbjct: 248 GNYMRFFSTISAEASYLQYCILERYINKV 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205116|emb|CBI40637.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/331 (61%), Positives = 253/331 (76%), Gaps = 14/331 (4%)

Query: 7   SQSHSQRQQRRNHFSSSSSSSSNQSRSN----NRFSFPKSSSSSSSSSANDVRDRRRETQ 62
           +Q+   R+QRRN  +SSS+ SS  S S+     +FS     +S+S   A+ ++ +  + Q
Sbjct: 14  AQAVMDRRQRRNPSASSSAFSSPTSSSSRFRSEKFSSNPPKTSNSLEDAHQLKSKCGKPQ 73

Query: 63  EEKQEE----------AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVK 112
             +QEE          ++VGTCPFMCP  ER QR+RLRDLAVFERLHG+P  +SP+LAVK
Sbjct: 74  RPEQEEEGEQDPNNLLSLVGTCPFMCPAGERAQRERLRDLAVFERLHGNPGKTSPSLAVK 133

Query: 113 KFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIM 172
           KFCRT++ K ++ASDVRPLPVLEETLNYLL+LLD+TEHPFEV+HDFVFDRTRS+RQDL M
Sbjct: 134 KFCRTIATKHMQASDVRPLPVLEETLNYLLNLLDATEHPFEVVHDFVFDRTRSIRQDLSM 193

Query: 173 QNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEAN 232
           QNIVND+ I+M+E++VKFH+ISHHKLRS  S  + S +HYLN+EQL K L SLY LYE N
Sbjct: 194 QNIVNDQTIHMYEEMVKFHIISHHKLRSCSSKPNFSSVHYLNMEQLKKCLISLYALYEEN 253

Query: 233 RSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYF 292
           R+S  I++ E EF SF+VLLHL SN QP+GESLSLW   VPS I+KSKEM FAR+ LR F
Sbjct: 254 RNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESLSLWLGRVPSLILKSKEMCFARRLLRLF 313

Query: 293 QMGNYRRFLSTVAAEASYLQYCIIEPYIDEA 323
           +MGNY+RFL T A EASYLQY IIEPYI+E 
Sbjct: 314 RMGNYKRFLCTTATEASYLQYYIIEPYINEV 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494933|ref|XP_003634875.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/298 (64%), Positives = 234/298 (78%), Gaps = 10/298 (3%)

Query: 36  RFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE----------AIVGTCPFMCPEAERLQ 85
           +FS     +S+S   A+ ++ +  + Q  +QEE          ++VGTCPFMCP  ER Q
Sbjct: 30  KFSSNPPKTSNSLEDAHQLKSKCGKPQRPEQEEEGEQDPNNLLSLVGTCPFMCPAGERAQ 89

Query: 86  RQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLL 145
           R+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDVRPLPVLEETLNYLL+LL
Sbjct: 90  RERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDVRPLPVLEETLNYLLNLL 149

Query: 146 DSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSS 205
           D+TEHPFEV+HDFVFDRTRS+RQDL MQNIVND+ I+M+E++VKFH+ISHHKLRS  S  
Sbjct: 150 DATEHPFEVVHDFVFDRTRSIRQDLSMQNIVNDQTIHMYEEMVKFHIISHHKLRSCSSKP 209

Query: 206 SISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESL 265
           + S +HYLN+EQL K L SLY LYE NR+S  I++ E EF SF+VLLHL SN QP+GESL
Sbjct: 210 NFSSVHYLNMEQLKKCLISLYALYEENRNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESL 269

Query: 266 SLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEA 323
           SLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+E 
Sbjct: 270 SLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569219|ref|XP_002525578.1| leng8 protein, putative [Ricinus communis] gi|223535157|gb|EEF36837.1| leng8 protein, putative [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/297 (63%), Positives = 234/297 (78%), Gaps = 4/297 (1%)

Query: 30  QSRSNNRFSFPKSSSSSSSSSAND----VRDRRRETQEEKQEEAIVGTCPFMCPEAERLQ 85
           ++ SN+R+  P    S ++S+  +    +      T ++     +VGTCPFMCPE+ER Q
Sbjct: 61  KNTSNSRYVPPSRRPSITTSTTQNEKVKIGGEEEVTTKDYSFPVLVGTCPFMCPESERTQ 120

Query: 86  RQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLL 145
           R+RLRDLAVFERLHG+P  +SP+LAVKKFCRT+S   V+ASDVRPLPVLE+TL+YLL+L 
Sbjct: 121 RERLRDLAVFERLHGNPGKTSPSLAVKKFCRTISTAHVQASDVRPLPVLEDTLSYLLNLA 180

Query: 146 DSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSS 205
           DST+HPFEV+HDF+FDRTRS+RQDL MQNIVNDKAI M+EK+VKFHV SHH+L+   S  
Sbjct: 181 DSTDHPFEVVHDFLFDRTRSIRQDLSMQNIVNDKAIYMYEKMVKFHVESHHRLQHGGSGE 240

Query: 206 SISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESL 265
            IS +HYLN+EQL KALTSLY LY+AN++   I+E E+EFRS YVLLHLDS  QP+GESL
Sbjct: 241 HISSVHYLNMEQLIKALTSLYKLYDANQNPNCIYENESEFRSLYVLLHLDSRNQPMGESL 300

Query: 266 SLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDE 322
           SLWF  +P PII+SKEM F+R  LR F+MGNY+RF  TVAAEAS+LQYCIIE Y +E
Sbjct: 301 SLWFSRLPHPIIQSKEMCFSRSVLRAFRMGNYKRFFYTVAAEASHLQYCIIERYFNE 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458706|ref|XP_004147088.1| PREDICTED: SAC3 family protein 1-like [Cucumis sativus] gi|449503506|ref|XP_004162036.1| PREDICTED: SAC3 family protein 1-like [Cucumis sativus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 238/319 (74%), Gaps = 11/319 (3%)

Query: 16  RRNHFSSSSSSSSNQSRSNN-----RFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE-- 68
           RRN+ + S +S  N ++ NN      F    S      SSA  +  ++ ET+++      
Sbjct: 31  RRNYSNRSRNSDYNYAKYNNTNSNRNFEHDSSDWRGKRSSAGKMYIQKLETKDDSDSSHF 90

Query: 69  ----AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVR 124
                IVGTCPFMCPEAER QR+RLRDLA+FERLHG+P  +SP LAVKKFCRTMSAK  +
Sbjct: 91  DLPPVIVGTCPFMCPEAERAQRERLRDLAIFERLHGNPGKTSPGLAVKKFCRTMSAKNDQ 150

Query: 125 ASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 184
           A DVRPLPVLE TL Y+LS LDS EHPFEVIHDFVFDRTRS+RQDL +QNIVN+KA+NM+
Sbjct: 151 ALDVRPLPVLENTLKYVLSFLDSKEHPFEVIHDFVFDRTRSIRQDLSIQNIVNEKAVNMY 210

Query: 185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAE 244
           E++V+FH ISH KL +  SSS+ S +H+LN++QL+K L +L NLYE NRS+  I E EAE
Sbjct: 211 EEMVRFHTISHQKLLNGDSSSNASSMHHLNMQQLSKTLITLLNLYEVNRSNGAIFENEAE 270

Query: 245 FRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTV 304
           F SFYVLLHL SN Q  GESL+LWFR + SP+IKSKEM FAR+ LRYF+M NY+ FL T+
Sbjct: 271 FHSFYVLLHLGSNSQTTGESLTLWFRTLRSPVIKSKEMCFARRILRYFRMCNYKGFLCTI 330

Query: 305 AAEASYLQYCIIEPYIDEA 323
            AEAS LQYCI+EPY++E 
Sbjct: 331 GAEASNLQYCILEPYVNEV 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515593|ref|XP_003628085.1| 80 kDa MCM3-associated protein [Medicago truncatula] gi|355522107|gb|AET02561.1| 80 kDa MCM3-associated protein [Medicago truncatula]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/317 (60%), Positives = 245/317 (77%), Gaps = 6/317 (1%)

Query: 7   SQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQ 66
           S S S+RQ+   + S+++   S  S  + R + P ++ ++S++S +D  D      ++  
Sbjct: 11  SFSQSRRQKFPLNASTATHHRSKVSTFSQRVTPPPTTGNNSNASTSDFND------DDSS 64

Query: 67  EEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRAS 126
              ++GTC +MCPE ER+QR++LRDLAVFERL+G+PR SSP LAVKKFCRT+S K+V+AS
Sbjct: 65  FGVLLGTCSYMCPERERIQREKLRDLAVFERLNGNPRKSSPVLAVKKFCRTISIKDVQAS 124

Query: 127 DVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEK 186
           D+RPL VLE+TLNYLL LLDS EHPFEV+HDF+FDRTRS+RQDL MQNIVN KAI M+E 
Sbjct: 125 DMRPLNVLEDTLNYLLGLLDSKEHPFEVVHDFIFDRTRSIRQDLTMQNIVNKKAIYMYEG 184

Query: 187 IVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
           +VKFHVISHHKL  S    +I+  H+LN+EQLTK L+SL+NLYEANR+S  +HE EAEF 
Sbjct: 185 MVKFHVISHHKLWGSMGDPNIASTHHLNMEQLTKTLSSLFNLYEANRNSNDVHENEAEFH 244

Query: 247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
           S YVLL+L S+ +P+GE LSLWF HV + I+KSKEM FAR+ +R F+MGNY  F  TVAA
Sbjct: 245 SLYVLLNLGSHSKPMGEPLSLWFSHVSTSILKSKEMRFARRIVRSFRMGNYIDFFHTVAA 304

Query: 307 EASYLQYCIIEPYIDEA 323
           EASYLQYCI+EPYI+E 
Sbjct: 305 EASYLQYCIMEPYINEV 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449759|ref|XP_002269431.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/255 (70%), Positives = 216/255 (84%)

Query: 69  AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDV 128
           ++VGTCPFMCP  ER QR+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDV
Sbjct: 73  SLVGTCPFMCPAGERAQRERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDV 132

Query: 129 RPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
           RPLPVLEETLNYLL+LLD+TEHPFEV+HDF+FDRTRS+RQDL MQNIVND+ I+M+E++V
Sbjct: 133 RPLPVLEETLNYLLNLLDATEHPFEVVHDFIFDRTRSIRQDLSMQNIVNDQTIHMYEEMV 192

Query: 189 KFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
           KFH++SHHKLRS  S  + S +HYLN+EQL K L SLY LYE NR+S  I++ E EF SF
Sbjct: 193 KFHIMSHHKLRSCSSKPNFSSVHYLNMEQLKKCLISLYALYEENRNSNSIYKNEPEFCSF 252

Query: 249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
           +VLLHL SN QP+GESLSLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EA
Sbjct: 253 HVLLHLGSNNQPLGESLSLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEA 312

Query: 309 SYLQYCIIEPYIDEA 323
           SYLQY IIEPYI+E 
Sbjct: 313 SYLQYYIIEPYINEV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084674|emb|CBI25811.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/255 (70%), Positives = 216/255 (84%)

Query: 69  AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDV 128
           ++VGTCPFMCP  ER QR+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDV
Sbjct: 87  SLVGTCPFMCPAGERAQRERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDV 146

Query: 129 RPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
           RPLPVLEETLNYLL+LLD+TEHPFEV+HDF+FDRTRS+RQDL MQNIVND+ I+M+E++V
Sbjct: 147 RPLPVLEETLNYLLNLLDATEHPFEVVHDFIFDRTRSIRQDLSMQNIVNDQTIHMYEEMV 206

Query: 189 KFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
           KFH++SHHKLRS  S  + S +HYLN+EQL K L SLY LYE NR+S  I++ E EF SF
Sbjct: 207 KFHIMSHHKLRSCSSKPNFSSVHYLNMEQLKKCLISLYALYEENRNSNSIYKNEPEFCSF 266

Query: 249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
           +VLLHL SN QP+GESLSLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EA
Sbjct: 267 HVLLHLGSNNQPLGESLSLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEA 326

Query: 309 SYLQYCIIEPYIDEA 323
           SYLQY IIEPYI+E 
Sbjct: 327 SYLQYYIIEPYINEV 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494973|ref|XP_003634889.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/298 (64%), Positives = 233/298 (78%), Gaps = 10/298 (3%)

Query: 36  RFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE----------AIVGTCPFMCPEAERLQ 85
           +FS     +S+S   A+ ++ +  + Q  KQEE          ++VGTCPFMCP  ER Q
Sbjct: 30  KFSSNPPKTSNSLEDAHQLKSKCGKPQRPKQEEEGEQDPNNLLSLVGTCPFMCPAGERAQ 89

Query: 86  RQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLL 145
           R+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDVRPLPVLEETLNYLL+LL
Sbjct: 90  RERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDVRPLPVLEETLNYLLNLL 149

Query: 146 DSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSS 205
           D+TEHPFEV+HDFVFDRTRS+RQDL MQNI+ND+ I+MFE++VKFH+ISHHKL S  S  
Sbjct: 150 DATEHPFEVVHDFVFDRTRSIRQDLSMQNIINDQTIHMFEEMVKFHIISHHKLHSCSSKP 209

Query: 206 SISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESL 265
           S S +HYLN+EQL K L SLY LY+ NR+S  I++ E EF SF+VLLHL SN QP+GESL
Sbjct: 210 SFSSVHYLNMEQLKKCLISLYALYKENRNSNSIYKNEPEFYSFHVLLHLGSNNQPLGESL 269

Query: 266 SLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEA 323
           SLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+E 
Sbjct: 270 SLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494979|ref|XP_003634890.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/255 (70%), Positives = 214/255 (83%)

Query: 69  AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDV 128
           ++VGTCPFMCP  ER QR+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDV
Sbjct: 73  SLVGTCPFMCPAGERAQRERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDV 132

Query: 129 RPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
           RPLPVLEETLNYLL+LLD+TEHPFEV+HDFVFDRTRS+RQDL MQNIVND+ I+M+E++V
Sbjct: 133 RPLPVLEETLNYLLNLLDATEHPFEVVHDFVFDRTRSIRQDLSMQNIVNDQTIHMYEEMV 192

Query: 189 KFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
           KFH+ISHHKLRS  S  + S +HYLN+EQL K L SLY LY+ NR+S  I++ E EF SF
Sbjct: 193 KFHIISHHKLRSCSSKPNFSSVHYLNMEQLKKCLISLYALYKENRNSNSIYKNEPEFCSF 252

Query: 249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
           +VLLHL  N QP+GESLSLW   VPS I+KSKEM FAR+ LR F+MGNY+ FL T A EA
Sbjct: 253 HVLLHLGFNNQPLGESLSLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKHFLCTTATEA 312

Query: 309 SYLQYCIIEPYIDEA 323
           SYLQY IIEPYI+E 
Sbjct: 313 SYLQYYIIEPYINEV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2096189	406	SAC3C "AT3G54380" [Arabidopsis	0.777	0.620	0.573	8.1e-76
TAIR|locus:2082485	1697	SAC3B "AT3G06290" [Arabidopsis	0.768	0.146	0.337	4.4e-32
UNIPROTKB|F1NVG3	1659	MCM3AP "Uncharacterized protei	0.740	0.144	0.319	6.7e-24
ZFIN|ZDB-GENE-040715-1	2118	mcm3ap "MCM3 minichromosome ma	0.737	0.112	0.316	1.9e-23
UNIPROTKB|O60318	1980	MCM3AP "80 kDa MCM3-associated	0.743	0.121	0.303	3.8e-21
RGD|1306834	1908	Mcm3ap "minichromosome mainten	0.75	0.127	0.300	5.9e-21
MGI|MGI:1930089	1971	Mcm3ap "minichromosome mainten	0.75	0.123	0.300	6.2e-21
UNIPROTKB|I3LCF4	1990	MCM3AP "Uncharacterized protei	0.743	0.121	0.291	1.3e-20
UNIPROTKB|E1BJE7	1979	MCM3AP "Uncharacterized protei	0.743	0.121	0.291	1.9e-19
POMBASE|SPCC576.05	1024	sac3 "nuclear export factor Sa	0.549	0.173	0.360	1.5e-18

TAIR|locus:2096189 SAC3C "AT3G54380" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 145/253 (57%), Positives = 185/253 (73%)

Query:    70 IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVR 129
             IVGTC  MCPE ER+ R+RLRDLAVFERL+G+P  SS  +AVKKFCRT+SA +V+ASDVR
Sbjct:    70 IVGTCSSMCPERERVTRERLRDLAVFERLYGNPSKSSTEIAVKKFCRTLSAADVQASDVR 129

Query:   130 PLPVXXXXXXXXXXXXXXXXHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVK 189
             PLPV                HPFEV+HDF+FDRTRS+RQDL +QN+ N++ I ++E++VK
Sbjct:   130 PLPVLEETLRYLLSLLDSKEHPFEVVHDFIFDRTRSIRQDLSIQNLANERVIYLYEEMVK 189

Query:   190 FHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFY 249
             FHVISH +L+          +H+LN+EQL K LTSLYN+Y+ANR    I+E EAEFRS Y
Sbjct:   190 FHVISHERLQSCSGTSISS-MHHLNMEQLAKTLTSLYNIYDANRKPDYIYENEAEFRSLY 248

Query:   250 VLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEAS 309
             VLLHL+ +   +GE LSLWFR +   ++KSKE+ F R  LR ++MGNY+ FLS  A+EA+
Sbjct:   249 VLLHLNPSSGVMGEPLSLWFRKLTFALVKSKEICFVRNLLRLYRMGNYKNFLSRTASEAT 308

Query:   310 YLQYCIIEPYIDE 322
             YLQYCI E +I E
Sbjct:   309 YLQYCISEHHIRE 321

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2082485 SAC3B "AT3G06290" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 87/258 (33%), Positives = 141/258 (54%)

Query:    70 IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVR 129
             I+G CP MCPE+ER +R+R  DL  +ER+ GD   +S +LAVKK+ RT   + +    +R
Sbjct:   481 IIGVCPDMCPESERGERERKGDLDHYERVDGDRNQTSKSLAVKKYTRTAEREAIL---IR 537

Query:   130 PLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             P+P+                +  F  +++F++DR R++R DL MQ+I N +AI + E+++
Sbjct:   538 PMPILQNTMEYLLSLLDRPYNENFLGMYNFLWDRMRAIRMDLRMQHIFNQEAITLLEQMI 597

Query:   189 KFHVISHHKLRXXXXXXXXXPLH--YLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
             + H+I+ H+L               +LN+EQ+ K    L+ +Y+ +R        E EFR
Sbjct:   598 RLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKKGITVPTEKEFR 657

Query:   247 SFYVLLHLDSN-GQPVGES-LSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTV 304
              +Y LL LD + G  V  S LSL   ++   I ++ E+ FAR   R  + GN+  F   +
Sbjct:   658 GYYALLKLDKHPGYKVEPSELSLDLANMTPEIRQTSEVLFARNVARACRTGNFIAFFR-L 716

Query:   305 AAEASYLQYCIIEPYIDE 322
             A +ASYLQ C++  +  +
Sbjct:   717 ARKASYLQACLMHAHFSK 734

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0034399 "nuclear periphery" evidence=IDA

UNIPROTKB|F1NVG3 MCM3AP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 6.7e-24, P = 6.7e-24
 Identities = 82/257 (31%), Positives = 130/257 (50%)

Query:    70 IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDV 128
             IVGTCP MCPE ER  R+    L++FE L G  + +  A A+K++ R+ +  +E    ++
Sbjct:   315 IVGTCPDMCPEKERYMRETRNQLSIFELLLGSDKVNHAA-AIKEYSRSSADQEEPLPHEL 373

Query:   129 RPLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKI 187
             RP  V                   +   +DFV++RTR +R+D+  Q++ N   +++ EK 
Sbjct:   374 RPSEVLSMTMDYLVTNIMDQGEGNYREWYDFVWNRTRGIRKDITQQHLCNPLMVSLIEKC 433

Query:   188 VKFHV-ISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEK-EAEF 245
              +FH+  +HH                +N E +TK L SL  +Y+ + ++K I+ K EAEF
Sbjct:   434 TRFHIHCAHHLCEEPMSSFDAK----INNENMTKCLQSLKEMYQ-DLANKGIYCKSEAEF 488

Query:   246 RSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVA 305
             R + VLL+L+      G+ L    +  P  +  S E+ FA QA       N+ RF   V 
Sbjct:   489 RGYNVLLNLNK-----GDILREVQQFHPE-VRNSPEVRFAVQAFAALNSNNFVRFFKLVQ 542

Query:   306 AEASYLQYCIIEPYIDE 322
             A ASYL  C++  Y ++
Sbjct:   543 A-ASYLNACLLHCYFNQ 558

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-040715-1 mcm3ap "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Danio rerio (taxid:7955)]

 Score = 286 (105.7 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 81/256 (31%), Positives = 130/256 (50%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTCP MCPE ER  R+    L+VFE +  D        A+K++ R+ +  +E    ++R
Sbjct:   686 VGTCPDMCPEKERYMRETRNQLSVFEVVP-DTEKVDHYAAIKEYSRSSADQEEPLPHELR 744

Query:   130 PLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             PLPV                       +DFV++RTR +R+D+  Q++ + + +++ EK  
Sbjct:   745 PLPVLSMTMDYLVTQIMDQGEGNCRDWYDFVWNRTRGIRKDITQQHLCDPETVSLIEKCT 804

Query:   189 KFHV-ISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIH-EKEAEFR 246
             +FH+  +HH  +             +N E +TK L SL  +Y+ + ++K ++  KEAEFR
Sbjct:   805 RFHIHCAHHLCQEPMMSFDAK----INNENMTKCLQSLKEMYQ-DLATKEVYCPKEAEFR 859

Query:   247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
              + VL+ L+ +G  + E     FR     I +S E+ FA Q        N+ RF   V+A
Sbjct:   860 QYNVLVKLN-DGDILREVQQ--FR---KEIRESPEVTFAVQVFAALNSNNFVRFFKLVSA 913

Query:   307 EASYLQYCIIEPYIDE 322
              ASYL  CI+  Y ++
Sbjct:   914 -ASYLSSCILHRYFNQ 928

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O60318 MCM3AP "80 kDa MCM3-associated protein" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 77/254 (30%), Positives = 121/254 (47%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTC  MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    ++R
Sbjct:   634 VGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHELR 692

Query:   130 PLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             PLPV                       +DFV++RTR +R+D+  Q++ +   +++ EK  
Sbjct:   693 PLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCT 752

Query:   189 KFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+ +
Sbjct:   753 RFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGY 809

Query:   249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
              VLL L+      G+ L    +  P+ +  S E+ FA QA       N+ RF   V + A
Sbjct:   810 NVLLSLNK-----GDILREVQQFHPA-VRNSSEVKFAVQAFAALNSNNFVRFFKLVQS-A 862

Query:   309 SYLQYCIIEPYIDE 322
             SYL  C++  Y  +
Sbjct:   863 SYLNACLLHCYFSQ 876

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0003677 "DNA binding" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006606 "protein import into nucleus" evidence=TAS

RGD|1306834 Mcm3ap "minichromosome maintenance complex component 3 associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 77/256 (30%), Positives = 122/256 (47%)

Query:    69 AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASD 127
             A VGTCP MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    +
Sbjct:   630 AFVGTCPDMCPEKERYLRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHE 688

Query:   128 VRPLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEK 186
             +RP  V                       +DFV++RTR +R+D+  Q++ +   +++ EK
Sbjct:   689 LRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEK 748

Query:   187 IVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
               +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+
Sbjct:   749 CTRFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQ 805

Query:   247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
              + VLL+L+      G+ L    +  P  +  S E+ FA QA       N+ RF   V +
Sbjct:   806 GYNVLLNLNK-----GDILREVQQFHPD-VRNSPEVDFAVQAFAALNSNNFVRFFKLVQS 859

Query:   307 EASYLQYCIIEPYIDE 322
              ASYL  C++  Y ++
Sbjct:   860 -ASYLNACLLHCYFNQ 874

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

MGI|MGI:1930089 Mcm3ap "minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 77/256 (30%), Positives = 122/256 (47%)

Query:    69 AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASD 127
             A VGTCP MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    +
Sbjct:   625 AFVGTCPDMCPEKERYLRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHE 683

Query:   128 VRPLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEK 186
             +RP  V                       +DFV++RTR +R+D+  Q++ +   +++ EK
Sbjct:   684 LRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEK 743

Query:   187 IVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
               +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+
Sbjct:   744 CTRFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQ 800

Query:   247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
              + VLL+L+      G+ L    +  P  +  S E+ FA QA       N+ RF   V +
Sbjct:   801 GYNVLLNLNK-----GDILREVQQFHPD-VRNSPEVNFAVQAFAALNSNNFVRFFKLVQS 854

Query:   307 EASYLQYCIIEPYIDE 322
              ASYL  C++  Y ++
Sbjct:   855 -ASYLNACLLHCYFNQ 869

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

UNIPROTKB|I3LCF4 MCM3AP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 74/254 (29%), Positives = 121/254 (47%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTCP MCPE ER  R+    L++FE + G  +    A AVK++ R+ +  +E    ++R
Sbjct:   637 VGTCPDMCPEKERYMRETRSQLSIFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHELR 695

Query:   130 PLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             P  V                       +DF+++RTR +R+D+  Q++ +   +++ EK  
Sbjct:   696 PSAVLSRTMDYLVTQIMDQKEGSLRDWYDFLWNRTRGIRKDITQQHLCDPVTVSLIEKCT 755

Query:   189 KFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +FH+   H +           +   N E +T+ L SL  +Y+  R        EAEF+ +
Sbjct:   756 RFHIHCAHFMCEEPMSSFDANI---NSENMTRCLQSLKEMYQDLRVKGVFCAGEAEFQGY 812

Query:   249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
              VLLHL+      G+ L    +  P+ +  S E+ FA QA       N+ RF   V + A
Sbjct:   813 NVLLHLNK-----GDILREVQQFHPA-VRNSSEVKFAVQAFAALNSNNFVRFFKLVQS-A 865

Query:   309 SYLQYCIIEPYIDE 322
             SYL  C++  Y ++
Sbjct:   866 SYLNACLLHRYFNQ 879

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BJE7 MCM3AP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 74/254 (29%), Positives = 121/254 (47%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTC  MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    ++R
Sbjct:   632 VGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHELR 690

Query:   130 PLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             P  V                       +DF+++RTR +R+D+  Q++ +   +++ EK  
Sbjct:   691 PSGVLSRTMDYLVTQIMDQTEGGLRDWYDFLWNRTRGIRKDITQQHLCDPLTVSLIEKCT 750

Query:   189 KFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+ +
Sbjct:   751 RFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGY 807

Query:   249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
              VLL+L+      G+ L    +  P+ +  S E+ FA QA       N+ RF   V + A
Sbjct:   808 NVLLNLNK-----GDILREVQQFHPA-VRNSPEVKFAVQAFAALNSNNFVRFFKLVQS-A 860

Query:   309 SYLQYCIIEPYIDE 322
             SYL  C++  Y ++
Sbjct:   861 SYLNACLLHCYFNQ 874

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPCC576.05 sac3 "nuclear export factor Sac3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 236 (88.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 67/186 (36%), Positives = 89/186 (47%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKE-VRASDVR 129
             VGTCP MCPE ER QR+   +L  +E ++ +       LAVK F R  +  E    SDVR
Sbjct:   105 VGTCPDMCPEYEREQREYQNNLERWE-INPETGRVDKNLAVKAFHRPAAGNEQALPSDVR 163

Query:   130 PLPVXXXXXXXXXXXXXXXXHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVK 189
             P PV                 P E  H FV DRTRS+RQD  +QN  +  A+   E+I +
Sbjct:   164 PPPVLKKSLDYLVDKIVCGPDPLENTHFFVRDRTRSIRQDFTLQNCRDLDAVACHERIAR 223

Query:   190 FHVISHHKLRXXXXXXXXXPLHYLNLEQLTKA-LTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +H++  H+L                +EQL K  L SL   Y+  R  K     E EFRS+
Sbjct:   224 YHILCIHQLCEKKQFSAQQ-----EVEQLRKGILQSLCEFYDDLRKVKIRCPNEPEFRSY 278

Query:   249 YVLLHL 254
              ++ HL
Sbjct:   279 AIITHL 284

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006611 "protein export from nucleus" evidence=ISO

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
COG5079	646	COG5079, SAC3, Nuclear protein export factor [Intr	7e-33
pfam03399	155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	2e-08

>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

 Score =  127 bits (321), Expect = 7e-33
 Identities = 85/254 (33%), Positives = 121/254 (47%), Gaps = 23/254 (9%)

Query: 53  DVRDRRRETQEEKQ------EEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSS 106
            +R + RE  E K           VGTC  MCPE ER +R    D++ +E  + + + +S
Sbjct: 50  KLRAKERELLEAKSANALPSAIVFVGTCMDMCPEFEREERVLQNDVSPYE-ANPNVKKAS 108

Query: 107 PALAVKKFCRTMSAKE-VRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRS 165
             LAVK + R  + K     SDVRP  VL +T++YL+ L          +H FV DRTR+
Sbjct: 109 RTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYLVKLCAG--DQLIEMHRFVRDRTRA 166

Query: 166 VRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSL 225
           VRQD  +QN     A+   E+I +FH++  H L      S         LEQL K+L SL
Sbjct: 167 VRQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHPHFSK-----QQELEQLKKSLASL 221

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQP-VGESLSLWFRHVPSPIIKSKEMWF 284
             LY+  R+ K     EAEFR++ +L  L   G P     +  W    P  I     +  
Sbjct: 222 IELYDDGRAGKKECPNEAEFRAYAILASL---GDPRYVAGIQGW----PGGIFCDLPVQI 274

Query: 285 ARQALRYFQMGNYR 298
           A + ++  Q  N+R
Sbjct: 275 ALKLMQLAQSNNFR 288

Length = 646

>gnl|CDD|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 214 NLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP 273
           +LEQ  + L+ L  LY+           EAEF ++Y+L  L +N  P+ +  +     +P
Sbjct: 28  DLEQFNQCLSQLKELYD---DLLGKSPNEAEFIAYYLLYLLSNN--PISDFHTELEL-LP 81

Query: 274 SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDE 322
             I     + FA +  +    GNY RF   +  +A YL  C++E ++D 
Sbjct: 82  DEIRNDPYIQFALELEQALMEGNYHRFFRLL-KKAPYLYACLLERFLDR 129

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG1860	927	consensus Nuclear protein export factor [Intracell	100.0
COG5079	646	SAC3 Nuclear protein export factor [Intracellular	100.0
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	100.0
KOG1861	540	consensus Leucine permease transcriptional regulat	100.0
KOG3151	260	consensus 26S proteasome regulatory complex, subun	90.47
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	88.8

>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4e-67  Score=543.85  Aligned_cols=275  Identities=36%  Similarity=0.583  Sum_probs=240.3

Q ss_pred             ccCCCCCCCCCCc-hHHHHHhHHHhHHHh----------------hcCCccccCCCCCcHHHHHHHHHhcccccchhccC
Q 020581           38 SFPKSSSSSSSSS-ANDVRDRRRETQEEK----------------QEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHG  100 (324)
Q Consensus        38 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~k----------------~~~~~vGtC~~MCPe~Er~~R~~~~~l~~fE~~~~  100 (324)
                      |..++++.+.++- ++-+..-++.++.++                ....+||||+|||||+||++|+++++||+||+.+ 
T Consensus        56 r~~~p~~~~~~~~~~~~l~~~r~~~~~~~~~~~~kd~~~~~~~~~~~~~~vGtC~dMCPE~Er~eRe~~~~l~~yE~~p-  134 (927)
T KOG1860|consen   56 RVARPSSLLERNAMLEPLKGKRTFEQFEMERDALKDLLPKRENLEPAELFVGTCPDMCPEKERYEREREKDLHPYEVVP-  134 (927)
T ss_pred             cccCcccccchhhhhhhhhcccCChHHHHHHhhcccccccccccchhhhhcccchhhCchHHHHHHHHhcCCCeeeecC-
Confidence            8888888888886 444432222222222                2359999999999999999999999999999987 


Q ss_pred             CCCCCCccchhhcccccccCCC-CCCCCCCCHHHHHHHHHHHHH-HhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCc
Q 020581          101 DPRNSSPALAVKKFCRTMSAKE-VRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVND  178 (324)
Q Consensus       101 ~~~~~~~~~aVK~Y~RsaA~~~-~~P~~vRP~~vL~kT~~yLl~-~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~  178 (324)
                      ++++++|.+|||+|+|||||++ |.|+|||||+||.+||+||++ ++...+.++..+|+||||||||||||||+||+.+.
T Consensus       135 ~~~~~~~~~aVK~ysRPAAgke~pLPsdvRP~~VL~~T~dYLl~~v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~  214 (927)
T KOG1860|consen  135 DSKQASPSLAVKEYSRPAAGKERPLPSDVRPPPVLVKTVDYLLGKVLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQ  214 (927)
T ss_pred             CCcccCHHHHHHHhcCcccCCCCCCccccCCHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence            6789999999999999999986 589999999999999999996 55566679999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCC
Q 020581          179 KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNG  258 (324)
Q Consensus       179 ~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~  258 (324)
                      +||.|+|+|+||||++.|+||+.+  ++|+  .++|+|||+|||.+|.++|+|+++.|+.||||+||+||++|++|++++
T Consensus       215 ~Av~llE~i~RfhI~~~h~Lce~~--~~Fd--a~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~~  290 (927)
T KOG1860|consen  215 EAVELLERIARFHILFRHRLCEEP--EQFD--AQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLLSLGDPQ  290 (927)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc--ccCC--hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhcCCch
Confidence            999999999999999999999987  3575  789999999999999999999999999999999999999999999986


Q ss_pred             CchhhhHHHHhhcCCccccCCHhHHHHHHHHHHHHhCCHHHHHH------------------HHhh-CCChHHHHHHHhh
Q 020581          259 QPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLS------------------TVAA-EASYLQYCIIEPY  319 (324)
Q Consensus       259 ~~l~~~L~~~l~~L~~~i~~sp~v~~Al~v~~A~~~~Ny~rFF~------------------Ll~~-~a~yL~aCll~~~  319 (324)
                      .      ..-++.+|++++++++|++|+.+..|++.|||++||+                  +..+ ..+||++|+++.|
T Consensus       291 ~------~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~  364 (927)
T KOG1860|consen  291 V------VRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELF  364 (927)
T ss_pred             H------HHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            2      1234567999999999999999999999999887764                  6654 4688999999999


Q ss_pred             hccc
Q 020581          320 IDEA  323 (324)
Q Consensus       320 f~~v  323 (324)
                      |..+
T Consensus       365 f~~i  368 (927)
T KOG1860|consen  365 FPDI  368 (927)
T ss_pred             HHHH
Confidence            9753

>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

Probab=100.00  E-value=1.5e-64  Score=497.15  Aligned_cols=275  Identities=32%  Similarity=0.452  Sum_probs=246.1

Q ss_pred             CccccCCCCCCCCCCchHHHHHhHHHhHH---Hhh-----c-CCccccCCCCCcHHHHHHHHHhcccccchhccCCCCCC
Q 020581           35 NRFSFPKSSSSSSSSSANDVRDRRRETQE---EKQ-----E-EAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNS  105 (324)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~-----~-~~~vGtC~~MCPe~Er~~R~~~~~l~~fE~~~~~~~~~  105 (324)
                      -.+|..+|++++.+|.+|.+..-++++++   +|.     + -.+||||++|||++|+.+|..+++|++||.. ++.+++
T Consensus        29 r~~m~~l~ss~~d~n~fe~LkklR~kere~~eak~a~~l~~a~vfvGtC~dmCPefEreeR~lqn~v~pyE~n-P~~k~a  107 (646)
T COG5079          29 RVFMVLLFSSTLDTNPFELLKKLRAKERELLEAKSANALPSAIVFVGTCMDMCPEFEREERVLQNDVSPYEAN-PNVKKA  107 (646)
T ss_pred             HHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccccchhheeecchhhhCchHHHHHHHHhcCCchhhcC-cccccc
Confidence            34588999999999999999988888777   332     1 2899999999999999999999999999986 456899


Q ss_pred             CccchhhcccccccCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCchhHHHH
Q 020581          106 SPALAVKKFCRTMSAKEV-RASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF  184 (324)
Q Consensus       106 ~~~~aVK~Y~RsaA~~~~-~P~~vRP~~vL~kT~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vl  184 (324)
                      ++++|||.|.|+|||+.+ .|+|||||+||.+|+|||+.+++.  .++...|.|+|||+||||||||+|+..+.+||+|+
T Consensus       108 ~~~lAvKay~RPAAgk~p~LPsDVRPp~VLvktidylv~~c~~--d~l~e~~~Fv~drtRavrqDftiQN~~g~dAV~c~  185 (646)
T COG5079         108 SRTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYLVKLCAG--DQLIEMHRFVRDRTRAVRQDFTIQNEKGKDAVECH  185 (646)
T ss_pred             chhhHHHHhcCccccCCCCCcccCCChHHHHHHHHHHHHHhcC--cchHHHHHHHHhhhHHHHhhceeecccCchHHHHH
Confidence            999999999999999865 799999999999999999966654  36678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhh
Q 020581          185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGES  264 (324)
Q Consensus       185 E~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~  264 (324)
                      |+||||||++.|.|++.+   +|+  .+|++|||.+.|.+|.++|++++..+..||||+||+||.||.+|+|+.-  +  
T Consensus       186 EriaRfhIl~lh~L~~~p---~Fs--~qqeleQL~ksL~sL~elYdd~r~~~~~cpneaEFraYaiL~slgDp~y--v--  256 (646)
T COG5079         186 ERIARFHILFLHLLHDHP---HFS--KQQELEQLKKSLASLIELYDDGRAGKKECPNEAEFRAYAILASLGDPRY--V--  256 (646)
T ss_pred             HHHHHHHHHHHHHHhcCc---ccc--HHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCchh--h--
Confidence            999999999999999864   576  6899999999999999999999999999999999999999999999862  2  


Q ss_pred             HHHHhhcCCccccCCHhHHHHHHHHHHHHhCC---------------HHHHHHHHhh-CCChHHHHHHHhhhccc
Q 020581          265 LSLWFRHVPSPIIKSKEMWFARQALRYFQMGN---------------YRRFLSTVAA-EASYLQYCIIEPYIDEA  323 (324)
Q Consensus       265 L~~~l~~L~~~i~~sp~v~~Al~v~~A~~~~N---------------y~rFF~Ll~~-~a~yL~aCll~~~f~~v  323 (324)
                        .-++.+|..+++.+.|+.|+.+..-.+.||               |.|||+++++ .++||++||++.|+..+
T Consensus       257 --~~iq~wp~~if~d~~vq~alkl~~laq~nn~r~~~~rnteac~nlytrFfkl~qSpsv~~lmg~lle~h~~si  329 (646)
T COG5079         257 --AGIQGWPGGIFCDLPVQIALKLMQLAQSNNFRLLGRRNTEACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISI  329 (646)
T ss_pred             --hccccCCccccccchHHHHHHHHHHhhccCeeeccccchhhhhHHHHHHHHHHhCccHHHHHHHHHHHhhHHH
Confidence              224457899999999999999988777776               7999999976 69999999999998764

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=100.00  E-value=3.6e-42  Score=308.56  Aligned_cols=175  Identities=40%  Similarity=0.629  Sum_probs=137.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCchhHHHHHHHHHHHHHHhhhhhcc
Q 020581          122 EVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSS  201 (324)
Q Consensus       122 ~~~P~~vRP~~vL~kT~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vlE~~~RF~I~s~~~L~~~  201 (324)
                      +|+|++||||+||++||+||++++     ++..+|+|||||+||||||+++||+.+++++.|||.+|||+|.+       
T Consensus         2 ~p~p~~vRp~~vL~~t~~~l~~~~-----~~~~~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~-------   69 (204)
T PF03399_consen    2 EPNPSDVRPPEVLKKTLNYLLRKI-----PFKDDYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIES-------   69 (204)
T ss_dssp             ---------HHHHHHHHHHHHHHT-----CCCCHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH-------
T ss_pred             CCChHhCCCHHHHHHHHHHHHHHh-----hhhhhhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhc-------
Confidence            578999999999999999999988     45579999999999999999999999999999999999999998       


Q ss_pred             CCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhhHHHHhhcCCccccCCHh
Q 020581          202 CSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE  281 (324)
Q Consensus       202 ~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~L~~~l~~L~~~i~~sp~  281 (324)
                                 .|.+||++|+++|+++|++.+. +..++|++||.||+||+++.+.+.  . .+...+..+|+++..+|.
T Consensus        70 -----------~d~~qf~~c~~~L~~lY~~~~~-~~~~~~~~ef~~y~lL~~l~~~~~--~-~~~~~l~~l~~~~~~~~~  134 (204)
T PF03399_consen   70 -----------GDLEQFNQCLSQLKELYDDLRD-LPPSPNEAEFIAYYLLYLLCQNNI--P-DFHMELELLPSEILSSPY  134 (204)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHH-T---TTHHHHHHHHHHHTT-T-----T-HHHHHHTTS-HHHHTSHH
T ss_pred             -----------CCHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHcccc--h-HHHHHHHHCchhhhcCHH
Confidence                       1378999999999999999743 568899999999999999954321  1 233445677889999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHh-hCCChHHHHHHHhhhccc
Q 020581          282 MWFARQALRYFQMGNYRRFLSTVA-AEASYLQYCIIEPYIDEA  323 (324)
Q Consensus       282 v~~Al~v~~A~~~~Ny~rFF~Ll~-~~a~yL~aCll~~~f~~v  323 (324)
                      |++|++|..|+.+|||++||++++ ..+|++++|+|+.|++.|
T Consensus       135 i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~i  177 (204)
T PF03399_consen  135 IQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRI  177 (204)
T ss_dssp             HHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence            999999999999999999999983 489999999999999875

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]

Probab=100.00  E-value=1.5e-38  Score=311.63  Aligned_cols=177  Identities=21%  Similarity=0.353  Sum_probs=154.8

Q ss_pred             hcccccccCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCchhHHHHHHHHHHH
Q 020581          112 KKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFH  191 (324)
Q Consensus       112 K~Y~RsaA~~~~~P~~vRP~~vL~kT~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vlE~~~RF~  191 (324)
                      |.|.|+++  .|+|+.|||++||++++--|..++...     ..|.|++|+|+|||||||||+|.+.++|+|||..||+ 
T Consensus       286 KsyLRLTs--APdPstVRP~~VL~ksL~~vkdk~k~~-----~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARI-  357 (540)
T KOG1861|consen  286 KSYLRLTS--APDPSTVRPLEVLKKSLCLVKDKWKAK-----ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARI-  357 (540)
T ss_pred             HhHhhhcc--CCCccccCCHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHH-
Confidence            99999998  899999999999999999999888764     4799999999999999999999999999999996665 


Q ss_pred             HHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhhHHHHhhc
Q 020581          192 VISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRH  271 (324)
Q Consensus       192 I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~L~~~l~~  271 (324)
                             +.+.+|          +++|+||+++|+.+|...    +++ +-.||.||.|||.+-..+..  + +...++.
T Consensus       358 -------ALEkGD----------~~EfNQCQtQLk~LY~eg----ipg-~~~EF~AYriLY~i~tkN~~--d-i~sll~~  412 (540)
T KOG1861|consen  358 -------ALEKGD----------LEEFNQCQTQLKALYSEG----IPG-AYLEFTAYRILYYIFTKNYP--D-ILSLLRD  412 (540)
T ss_pred             -------HHhcCC----------HHHHHHHHHHHHHHHccC----CCC-chhhHHHHHHHHHHHhcCch--H-HHHHHHh
Confidence                   444454          799999999999999543    333 48999999999998765522  2 3345788


Q ss_pred             CCccccCCHhHHHHHHHHHHHHhCCHHHHHHHHhhCCChHHHHHHHhhhcc
Q 020581          272 VPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDE  322 (324)
Q Consensus       272 L~~~i~~sp~v~~Al~v~~A~~~~Ny~rFF~Ll~~~a~yL~aCll~~~f~~  322 (324)
                      |.+++++++.|.+||+|..|+..|||++||+|+. .||.|..|||+.|++.
T Consensus       413 lt~E~ked~~V~hAL~vR~A~~~GNY~kFFrLY~-~AP~M~~yLmdlF~er  462 (540)
T KOG1861|consen  413 LTEEDKEDEAVAHALEVRSAVTLGNYHKFFRLYL-TAPNMSGYLMDLFLER  462 (540)
T ss_pred             ccHhhccCHHHHHHHHHHHHHHhccHHHHHHHHh-hcccchhHHHHHHHHH
Confidence            9999999999999999999999999999999984 8999999999999864

>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]

Probab=90.47  E-value=2.3  Score=40.11  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCC
Q 020581          179 KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNG  258 (324)
Q Consensus       179 ~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~  258 (324)
                      .|-+|||..|=.-|..                  -|.+-|..-+.+|+..|-|....=..++++.-+.+..+|+.|..+.
T Consensus        54 ~aR~ilEi~vl~SI~t------------------~D~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNR  115 (260)
T KOG3151|consen   54 IARDILEIGVLLSILT------------------KDFESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNR  115 (260)
T ss_pred             HHHHHHHHHHHHHHHh------------------ccHHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHhcc
Confidence            4568999866433332                  2356788889999999998765434678888899999999887765


Q ss_pred             CchhhhHHHHhhcCCccccCC-HhHHHHHHHHHHHHhCCHHHHHHHHh
Q 020581          259 QPVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQMGNYRRFLSTVA  305 (324)
Q Consensus       259 ~~l~~~L~~~l~~L~~~i~~s-p~v~~Al~v~~A~~~~Ny~rFF~Ll~  305 (324)
                      .+   .+-.-+..||..++.+ |.|+.++.+=..+..|-|-+.|...+
T Consensus       116 ia---eFHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~  160 (260)
T KOG3151|consen  116 IA---EFHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQ  160 (260)
T ss_pred             HH---HHHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHh
Confidence            22   1223356788888776 99999999999999999999998654

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=88.80  E-value=1.3  Score=37.75  Aligned_cols=62  Identities=18%  Similarity=0.321  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhccCCCchhhhHHHHhhcCCccccCC-HhHHHHHHHHHHHHhCCHHHHHHHHhh
Q 020581          242 EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQMGNYRRFLSTVAA  306 (324)
Q Consensus       242 e~EF~aY~iLl~l~~~~~~l~~~L~~~l~~L~~~i~~s-p~v~~Al~v~~A~~~~Ny~rFF~Ll~~  306 (324)
                      .+++.+-.|+..|-..+  +. .....+..+|+.+..+ |.|+....+..++.+++|..|+..+++
T Consensus         3 ~~~~~~~~Ll~~L~~~~--~~-df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~   65 (143)
T PF10075_consen    3 NPEIYALILLKYLMQND--LS-DFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRS   65 (143)
T ss_dssp             -HHHHHHHHHHHHHTTT--ST-HHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-T
T ss_pred             chhHHHHHHHHHHHcCC--ch-HHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            46777766666665443  22 2334456789999995 999999999999999999999998753

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
3t5v_A	316	Sac3:thp1:sem1 Complex Length = 316		5e-08

>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex Length = 316

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 158 FVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQ 217
           F++DR RS+RQD   QN    +A++  E+IV+ H++  H +                LEQ
Sbjct: 35  FLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQ 90
Query: 218 LTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVL 251
           L K+L +L  +Y+  RSS      EAEFR++ +L
Sbjct: 91  LHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALL 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	2e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 316

 Score =  126 bits (318), Expect = 2e-34
 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 29/214 (13%)

Query: 125 ASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 184
            SDVRP  +L +TL+Y++  L +T         F++DR RS+RQD   QN    +A++  
Sbjct: 5   PSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCN 61

Query: 185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAE 244
           E+IV+ H++  H +  S    S        LEQL K+L +L  +Y+  RSS      EAE
Sbjct: 62  ERIVRIHLLILHIMVKSNVEFS----LQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAE 117

Query: 245 FRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQ----------- 293
           FR++ +L  +               + +P  I + K +  A    R              
Sbjct: 118 FRAYALLSKIRDP------QYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVK 171

Query: 294 ----MGNYRRFLSTV-AAEASYLQYCIIEPYIDE 322
               +  Y RF   + +     L    ++ ++ +
Sbjct: 172 TENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTD 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 35/259 (13%), Positives = 74/259 (28%), Gaps = 80/259 (30%)

Query: 56  DRRRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSS-PALAVKKF 114
           D  +    +K    I  +   + P      R+    L+VF      P ++  P + +   
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSVF------PPSAHIPTILLSLI 395

Query: 115 CRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQN 174
              +   +V         V+ +   Y L      E     I     +         +   
Sbjct: 396 WFDVIKSDVMV-------VVNKLHKYSLVEKQPKESTIS-IPSIYLE---------LKVK 438

Query: 175 IVNDKAINMFEKIVKFH--VISHHKLRSSCSSSSISPLH-------YLNLEQLTKALTSL 225
           + N+ A+         H  ++ H+ +  +  S  + P +       ++            
Sbjct: 439 LENEYAL---------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----------- 478

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFA 285
           ++L           E+   FR  +    LD             FR +   I      W A
Sbjct: 479 HHLKNIEHP-----ERMTLFRMVF----LD-------------FRFLEQKIRHDSTAWNA 516

Query: 286 RQALR--YFQMGNYRRFLS 302
             ++     Q+  Y+ ++ 
Sbjct: 517 SGSILNTLQQLKFYKPYIC 535

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 59/379 (15%), Positives = 107/379 (28%), Gaps = 128/379 (33%)

Query: 48  SSSANDVRDRRRETQE-EKQEEAIVGTCPFMCP-EAERLQ-----RQRLRDLAVFER--L 98
           S    + R     T+   +Q + +             RLQ     RQ L +L   +   +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 99  HGDPR--NSSPALAVKKFCRTMSAKEVRASDV---------RPLPVLE--ETLNYLL--- 142
            G      +  AL V   C +   +      +          P  VLE  + L Y +   
Sbjct: 156 DGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 143 --SLLDSTEHPFEVIHDFVFDRTRSVRQD-------LIMQNIVNDKAINMFE---KIV-- 188
             S  D + +    IH  +    R + +        L++ N+ N KA N F    KI+  
Sbjct: 213 WTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 189 --------------KFHVISHHKLRS--------------SCSSS-------SISPLH-- 211
                           H+   H   +               C          + +P    
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 212 -----------------YLNLEQLTKAL-TSLYNLYEANRSSKPIHEKEAEFRSFYVLLH 253
                            ++N ++LT  + +SL  L            + AE+R  +  L 
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL------------EPAEYRKMFDRLS 379

Query: 254 LDSNGQPVGESL--SLWF---RHVPSPIIKSKEMWFARQAL--------RYFQMGNYRRF 300
           +      +   L   +WF   +     ++        + +L               Y   
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQPKESTISIPSIYLEL 435

Query: 301 LSTVAAEASYLQYCIIEPY 319
              +  E + L   I++ Y
Sbjct: 436 KVKLENEYA-LHRSIVDHY 453

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 85  QRQRLRDLAVFERLHGDPRNSSPALAVK 112
           ++Q L+ L    +L+ D  +S+PALA+K
Sbjct: 18  EKQALKKLQASLKLYAD--DSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.72
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	99.66
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	86.71

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-52  Score=401.71  Aligned_cols=189  Identities=29%  Similarity=0.414  Sum_probs=167.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCCchhHHHHHHHHHHHHHHhhhhhcc
Q 020581          122 EVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSS  201 (324)
Q Consensus       122 ~~~P~~vRP~~vL~kT~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~~~~i~vlE~~~RF~I~s~~~L~~~  201 (324)
                      +|+|++||||+||++||+||++.+...   +..+|+||||||||||||||+|++.++++|.|||+||||||+|.|.||+.
T Consensus         2 ~P~P~~vRP~~vL~~Tl~yL~~~~~~~---~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~   78 (316)
T 3t5v_A            2 SPLPSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKS   78 (316)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTGGG---TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCChhhcCCHHHHHHHHHHHHHHHHhc---chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhC
Confidence            688999999999999999999977653   34689999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhhHHHHhhcCCccccCCHh
Q 020581          202 CSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE  281 (324)
Q Consensus       202 ~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~L~~~l~~L~~~i~~sp~  281 (324)
                      .  ..|+  .++|.+|+++||++|+++|++.++.|..+|||+||+||+||++|++++      +...+..||++++++|.
T Consensus        79 ~--~~f~--~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~------~~~~l~~Lp~~i~~~p~  148 (316)
T 3t5v_A           79 N--VEFS--LQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQ------YDENIQRLPKHIFQDKL  148 (316)
T ss_dssp             C--CCCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTH------HHHHHTTSCHHHHTSHH
T ss_pred             C--Cccc--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccch------HHHHHHhCCHHHhcCHH
Confidence            4  3464  789999999999999999999988888999999999999999998753      23457789999999999


Q ss_pred             HHHHHHHHHHHH---------------hCCHHHHHHHHhh-CCChHHHHHHHhhhccc
Q 020581          282 MWFARQALRYFQ---------------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEA  323 (324)
Q Consensus       282 v~~Al~v~~A~~---------------~~Ny~rFF~Ll~~-~a~yL~aCll~~~f~~v  323 (324)
                      |++|+.+..|+.               .|||+|||+|+++ .+|||++|||+.||++|
T Consensus       149 Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~v  206 (316)
T 3t5v_A          149 VQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDI  206 (316)
T ss_dssp             HHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence            999999999986               4899999999975 38999999999999876

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=99.72  E-value=3.9e-17  Score=149.50  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=122.3

Q ss_pred             HHHHHHHhcCCCCCchhhhHHhhhhhhhhhhhhhhhccCC--------chhHHHHHHHHHHHHHHhhhhhccCCCCCCch
Q 020581          138 LNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVN--------DKAINMFEKIVKFHVISHHKLRSSCSSSSISP  209 (324)
Q Consensus       138 ~~yLl~~l~~~~~~~~~~y~Fl~DRlRAIRQDltvQ~~~~--------~~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~  209 (324)
                      ++.|.+.+..+      .|+.+++-+..|++|||.|++..        ..|.+|||..+|..|..               
T Consensus        11 l~~L~~~~~~~------d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~---------------   69 (229)
T 4b0z_A           11 LNHLADLYDRK------DWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQT---------------   69 (229)
T ss_dssp             SHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHc---------------
Confidence            34555556654      48999999999999999999843        36789999977765543               


Q ss_pred             hhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhhHHHHhhcCCcc--ccCCHhHHHHHH
Q 020581          210 LHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSP--IIKSKEMWFARQ  287 (324)
Q Consensus       210 ~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~L~~~l~~L~~~--i~~sp~v~~Al~  287 (324)
                         .+.+++++|+++|+.+|.+..   ..++++.||.+|+||+.|..++.  . .+...+..+|+.  +.++|.|++|++
T Consensus        70 ---~D~~~F~~~~~qLk~~Y~~~~---~~s~~~~e~~~~~LL~lL~~~~~--~-ef~~~le~l~~~~~~~~~~~I~~al~  140 (229)
T 4b0z_A           70 ---CDIESFARYASQVIPFYHDSL---VPSSRMGLVTGLNLLYLLSENRI--A-EFHTALESVPDKSLFERDPYVEWVIS  140 (229)
T ss_dssp             ---TCHHHHHHHHHHHHHHHSSCC---CCCTTHHHHHHHHHHHHHHTTCH--H-HHHHHHHHCSCTTHHHHCHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHHccC---CCCccHHHHHHHHHHHHHHcCCc--h-HHHHHHHhcChHHHhhcCHHHHHHHH
Confidence               247899999999999998743   35789999999999998876542  2 233446667654  578999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhhCCC-hHHHHHHHhhhccc
Q 020581          288 ALRYFQMGNYRRFLSTVAAEAS-YLQYCIIEPYIDEA  323 (324)
Q Consensus       288 v~~A~~~~Ny~rFF~Ll~~~a~-yL~aCll~~~f~~v  323 (324)
                      |..|+..|||.+||++++ .+| ...+|+|+.+++.|
T Consensus       141 l~~al~~GnY~kff~l~~-~~p~~~~~~~~~~l~~~v  176 (229)
T 4b0z_A          141 LEQNVMEGAFDKVASMIR-SCNFPEFSYFMKIVMSMV  176 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHh-cCccchHHHHHHHHHHHH
Confidence            999999999999999985 554 45699999998764

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.1e-16  Score=150.20  Aligned_cols=148  Identities=11%  Similarity=0.119  Sum_probs=95.6

Q ss_pred             hhHHhhhhhhhhhhhhhhhccCCc--------------hhHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHH
Q 020581          155 IHDFVFDRTRSVRQDLIMQNIVND--------------KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK  220 (324)
Q Consensus       155 ~y~Fl~DRlRAIRQDltvQ~~~~~--------------~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~k  220 (324)
                      .|+-+.+-+..++++|+.|++-.+              .|.+|||..||+.        -..          .|.++|++
T Consensus        19 d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~s--------i~~----------~D~~~F~~   80 (274)
T 4b4t_T           19 DYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALAS--------IQT----------FNFDSFEN   80 (274)
T ss_dssp             ------------------------------------------CHHHHHHCC--------SSC----------SSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHH--------HHc----------CCHHHHHH
Confidence            367788889999999998887421              3568999966543        332          24789999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhccCCCchhhhHHHHhhcCC---ccccCCHhHHHHHHHHHHHHhCCH
Q 020581          221 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP---SPIIKSKEMWFARQALRYFQMGNY  297 (324)
Q Consensus       221 cl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~~~~~l~~~L~~~l~~L~---~~i~~sp~v~~Al~v~~A~~~~Ny  297 (324)
                      |+++|+.+|.+.......++|+.||.||+||+.|..++..   .+..-+..||   +++.++|.|++|+++..|+..|||
T Consensus        81 ~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~---efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY  157 (274)
T 4b4t_T           81 YFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTT---KFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSY  157 (274)
T ss_dssp             HHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCST---HHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHH---HHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCH
Confidence            9999999999987666678999999999999988654422   1222344565   467889999999999999999999


Q ss_pred             HHHHHHHhh-C-CChHHHHHHHhhhccc
Q 020581          298 RRFLSTVAA-E-ASYLQYCIIEPYIDEA  323 (324)
Q Consensus       298 ~rFF~Ll~~-~-a~yL~aCll~~~f~~v  323 (324)
                      .+||+++++ + .+++.+|+|+.+++.|
T Consensus       158 ~kff~l~~~~~~p~~~~~~f~d~l~~~i  185 (274)
T 4b4t_T          158 QKAWDLLQSGSQNISEFDSFTDILKSAI  185 (274)
T ss_dssp             HHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence            999999864 2 4689999999999865

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=86.71  E-value=2.5  Score=37.95  Aligned_cols=101  Identities=13%  Similarity=0.139  Sum_probs=65.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcc
Q 020581          177 NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDS  256 (324)
Q Consensus       177 ~~~~i~vlE~~~RF~I~s~~~L~~~~~~~~f~~~~~~n~eql~kcl~sL~~lY~d~~~~~~~~~ne~EF~aY~iLl~l~~  256 (324)
                      ++..+..+|+.+.-.       +.++.   |+      .+ -+-++   ..+|.-.     +.....+..+..+|..|.+
T Consensus        22 np~~l~~le~Yv~qq-------~~~~~---YD------~~-anlal---LklYq~~-----p~~~~~~ii~~iLlk~L~~   76 (226)
T 1rz4_A           22 NPENLATLERYVETQ-------AKENA---YD------LE-ANLAV---LKLYQFN-----PAFFQTTVTAQILLKALTN   76 (226)
T ss_dssp             CGGGHHHHHHHHHHH-------HHHTC---CC------HH-HHHHH---HHHHHHS-----GGGCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHH-------Hhccc---cc------HH-HHHHH---HHHHhcC-----CcccchhHHHHHHHHHHHc
Confidence            678899999865332       22222   22      11 12233   3344442     3345678888877666644


Q ss_pred             CCCchhhhHHHHhhcCCccccCCHhHHHHHHHHHHHHhCCHHHHHHHHh
Q 020581          257 NGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVA  305 (324)
Q Consensus       257 ~~~~l~~~L~~~l~~L~~~i~~sp~v~~Al~v~~A~~~~Ny~rFF~Ll~  305 (324)
                      ...   ..+...+--||+.+..+|.|+..+.+...+.+++|..||+.++
T Consensus        77 ~p~---~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~  122 (226)
T 1rz4_A           77 LPH---TDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALD  122 (226)
T ss_dssp             TTS---THHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSC
T ss_pred             CCH---HHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            321   1233334447888889999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00