Citrus Sinensis ID: 020597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Secondary Structure (PSIPRED)
cccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQRLLSLKQLASKsnflknptnftfskpftchpnvqkrplssfskhpfhptfswrsqqslslktHAFLFNPLLARRFFTSLLSSQLRKsffdgkvlffraqfpersfaSFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRiadpkfmannftISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMsigrtlgpEYLLKLYMAGAIGGSVFYLVYHAFLAMSskrqgmwvvdpsrtpalgasgaVNAIMLLDIFlnpkatlyfdffipvPAFLLGVFLIGKDMLRIIEgnsnisgsahLGGAAVAALAWARIRRRGF
Flexible Loop (DISEMBL)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFfraqfpersfasFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Low Complexity Region (SEG)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISgsahlggaavaalawarirrrgF
Disordered region (IsUnstruct)
**********************FTFSKPFTCH***************FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI*****
Disordered Region (DISOPRED)
*************************************************************LKTHAFLFNPLLARRFFTSLLSSQL**********************SF*YRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Disordered Region (DISEMBL)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Disordered Region (DISPRO)
**RLLSLKQLASKS******************************KHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
P53259	346	Rhomboid protein 1, mitoc	yes	no	0.546	0.511	0.302	4e-12
Q2KHV4	377	Presenilins-associated rh	yes	no	0.626	0.538	0.308	2e-10
Q3B8P0	377	Presenilins-associated rh	yes	no	0.626	0.538	0.308	2e-10
Q58EK4	383	Presenilins-associated rh	yes	no	0.521	0.441	0.306	2e-10
Q5XJY4	377	Presenilins-associated rh	yes	no	0.626	0.538	0.308	3e-10
Q5R5H4	379	Presenilins-associated rh	yes	no	0.626	0.535	0.308	4e-10
Q9H300	379	Presenilins-associated rh	yes	no	0.626	0.535	0.308	5e-10
O14364	298	Uncharacterized protein C	yes	no	0.546	0.593	0.309	2e-06
Q2PP52	531	Rhomboid-like protease 6	N/A	no	0.546	0.333	0.227	0.0003

>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 15/192 (7%)

Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
            +VY L+  N AVF LW++         + +   ++++ ++ ++I SAFSH +  H+  N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202

Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
           M+ L+ FG S+   LG      LYM  AI GS+F L Y     ++       +V PS   
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252

Query: 245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL--IGKDMLRIIEGNSNISG 302
            LGASGA+  ++    +L P A +   F  PVP      FL  +  +         +   
Sbjct: 253 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFLASVAWNAAGCALRWGSFDY 310

Query: 303 SAHLGGAAVAAL 314
           +AHLGG+ +  L
Sbjct: 311 AAHLGGSMMGVL 322

Mitochondrial rhomboid serine protease processing the mitochondrial membrane fusion regulator MGM1, and the cytochrome c peroxidase (CCP1). Required for TIM11 stability, ATP synthase complex assembly, mitochondrial morphology, cytochrome c (CYC1) storage and mitochondrial genome maintenance.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 243 FMAVYLSAGVISTFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+P+  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 243 FVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+PV  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPVFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 125 EVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
           + V G+I  NT V   WR+ A  +F+   FT +  +    R   ++ S+FSH  V H+V 
Sbjct: 168 KTVTGIIALNTVVLCCWRVPAMQRFLVKYFTSNPAS--KTRCLPMVLSSFSHYSVIHMVV 225

Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
           NM  L+ F  SI   LG E  L LY++G +  +    V+      ++ R G         
Sbjct: 226 NMYVLWTFSSSIVSLLGREQFLALYLSGGVISTFVSYVFKT----ATGRLG--------- 272

Query: 244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG---VFLIGKDMLRIIEGNSNI 300
           P+LGASG++  ++       P+A L     +PV +F  G     L+  D+  ++ G    
Sbjct: 273 PSLGASGSIMTVLAAVCTKIPEAKLGI-VLLPVISFSAGNALKALVALDIAGLVLGWRFF 331

Query: 301 SGSAHLGGA 309
             +AHLGGA
Sbjct: 332 DHAAHLGGA 340

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of opa1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 243 FVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 288

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+PV  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 289 IPEGRLAI-IFLPVFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 337

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+P+  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244

Query: 204 LLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL 262
            + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++      
Sbjct: 245 FMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVLAAVCTK 290

Query: 263 NPKATLYFDFFIPVPAFLLGVFL---IGKDMLRIIEGNSNISGSAHLGGA 309
            P+  L    F+P+  F  G  L   I  D   +I G      +AHLGGA
Sbjct: 291 IPEGRLAI-IFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGA 339

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals (By similarity). Promotes changes in mitochondria morphology regulated by phosphorylation of P-beta domain.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 30/207 (14%)

Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNF--TISLDNFLSGRLHTLITSAFS 174
           + Q  S  +V  +I  N  VF LWR   P+F   N F    ++ N +   + ++I SAFS
Sbjct: 71  IPQTSSRSLVLSIIGINVGVFALWR--APRFSHLNRFLQKYAVMNPIFINMPSMIVSAFS 128

Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
           H    H++ NM+  Y F  +I    G    +  Y++  +  +V  L++H  L   +K   
Sbjct: 129 HQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHHR-LRFGTK--- 184

Query: 235 MWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF--FIPVPAFLLGVFLIGK---D 289
              V P    +LGASGA+ AI     +  P A++   F  FIP+    +GV L+G    D
Sbjct: 185 ---VTPG---SLGASGAIYAIAAATSYFFPNASVSIIFLPFIPIK---IGVALLGLMAFD 235

Query: 290 MLRII-EGNSN------ISGSAHLGGA 309
              +I  G S+      I  +AHLGG 
Sbjct: 236 AWGLISRGFSSFANFTLIDHAAHLGGG 262

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2PP52|RHBL6_TOXGO Rhomboid-like protease 6 OS=Toxoplasma gondii GN=ROM6 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 90/237 (37%), Gaps = 60/237 (25%)

Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAF 173
           Y   +++   ++ N AVF  WR+A          F+  +F +  +N    R++T +TS+ 
Sbjct: 302 YEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLARARIYTFVTSSL 361

Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
           SH    H++ N+  +      +   L       L+   A+ G + +L+            
Sbjct: 362 SHKSTGHLIFNLFVINQLFRLLSFDLSDRDFASLFGLAALCGGLGHLLV----------- 410

Query: 234 GMWVVDPSRTPALGASG--------------------------AVNAIMLLDIFLNPKAT 267
                  SR P LGAS                            + A+ L+ + +  +A 
Sbjct: 411 -------SRQPVLGASAFAYALLWTEATRHSREMFRILPIPFFPLTALQLVQVAMCLEAA 463

Query: 268 LYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL-AWARIRRRG 323
           +    F+  PAFL         +LR  +G   IS S HLGG A   L +W + R  G
Sbjct: 464 MA---FLARPAFL--ARFPASRLLRFAQG---ISWSGHLGGLAAGCLYSWYKRRVEG 512

Putative serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
225456573	333	PREDICTED: rhomboid protein 1, mitochond	0.972	0.945	0.598	1e-101
297734076	362	unnamed protein product [Vitis vinifera]	0.966	0.864	0.596	1e-100
224092178	242	predicted protein [Populus trichocarpa]	0.709	0.950	0.716	4e-85
18394631	336	RHOMBOID-like protein 12 [Arabidopsis th	0.799	0.770	0.611	1e-83
297844814	336	rhomboid family protein [Arabidopsis lyr	0.799	0.770	0.604	3e-82
356513475	336	PREDICTED: uncharacterized protein C13E7	0.790	0.761	0.619	1e-78
449439341	336	PREDICTED: uncharacterized protein C13E7	1.0	0.964	0.538	1e-77
147790859	293	hypothetical protein VITISV_019858 [Viti	0.867	0.959	0.501	2e-74
255547155	195	conserved hypothetical protein [Ricinus	0.558	0.928	0.720	2e-65
294462624	314	unknown [Picea sitchensis]	0.737	0.761	0.541	1e-60

>gi|225456573|ref|XP_002265768.1| PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/339 (59%), Positives = 239/339 (70%), Gaps = 24/339 (7%)

Query: 1   MQRLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH------- 49
           MQRL+SLK  +  S  +       F+KP      HPN     LS  S  H  H       
Sbjct: 1   MQRLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPP 53

Query: 50  PTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA- 108
           P F W S   LS   + F+ NP L ++F  + L     K+    +V F RAQFP RSF  
Sbjct: 54  PHFPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGF 113

Query: 109 -----SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
                S+  RWRSWL    +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SG
Sbjct: 114 SPSFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSG 173

Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
           R+HTLITSAFSHID+ H++SNMIGLYFFGM+IGR  GPE+LLKLY+AGA+ GSVFYLV+H
Sbjct: 174 RIHTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHH 233

Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
           AF+A SSK Q MW ++PS  P LGASGAVNAIMLLDIFL P++TLY +FFIPVPA LLG+
Sbjct: 234 AFMAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGI 293

Query: 284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
           FLIGKDMLRIIEG+  ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 294 FLIGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734076|emb|CBI15323.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/337 (59%), Positives = 237/337 (70%), Gaps = 24/337 (7%)

Query: 3   RLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH-------PT 51
           RL+SLK  +  S  +       F+KP      HPN     LS  S  H  H       P 
Sbjct: 32  RLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPPPH 84

Query: 52  FSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA--- 108
           F W S   LS   + F+ NP L ++F  + L     K+    +V F RAQFP RSF    
Sbjct: 85  FPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSP 144

Query: 109 ---SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL 165
              S+  RWRSWL    +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SGR+
Sbjct: 145 SFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSGRI 204

Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
           HTLITSAFSHID+ H++SNMIGLYFFGM+IGR  GPE+LLKLY+AGA+ GSVFYLV+HAF
Sbjct: 205 HTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHHAF 264

Query: 226 LAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
           +A SSK Q MW ++PS  P LGASGAVNAIMLLDIFL P++TLY +FFIPVPA LLG+FL
Sbjct: 265 MAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFL 324

Query: 286 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
           IGKDMLRIIEG+  ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 325 IGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092178|ref|XP_002309495.1| predicted protein [Populus trichocarpa] gi|222855471|gb|EEE93018.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 169/236 (71%), Positives = 190/236 (80%), Gaps = 6/236 (2%)

Query: 92  DGKVLFFRAQFPER------SFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD 145
           D KV FF A+F         S  S R  WRSW  +  +  VV GLIIAN AVFMLWRI D
Sbjct: 4   DCKVGFFIARFARGYSWSNLSLGSNRRGWRSWFNRLSADNVVLGLIIANAAVFMLWRIED 63

Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
            KFM  NF ISLDNF SGR+HTL+TSAFSHID+ HI  NMIGLYFFG +I RT GPE+LL
Sbjct: 64  QKFMMENFMISLDNFRSGRIHTLVTSAFSHIDIGHIAFNMIGLYFFGTNIARTFGPEFLL 123

Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK 265
           KLY+AGAIGGSVFYL++H ++ +SSK QGMW  D SRTP LGASGAVNAIMLLDIFLNP+
Sbjct: 124 KLYLAGAIGGSVFYLLHHGYMDLSSKGQGMWARDSSRTPGLGASGAVNAIMLLDIFLNPR 183

Query: 266 ATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
           ATLYFDF IPVPA LLG+FLIGKD+LR++EGNSNISGSAHLGGAAVAA+AWARI+R
Sbjct: 184 ATLYFDFIIPVPAILLGIFLIGKDLLRVMEGNSNISGSAHLGGAAVAAIAWARIKR 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394631|ref|NP_564058.1| RHOMBOID-like protein 12 [Arabidopsis thaliana] gi|9795596|gb|AAF98414.1|AC026238_6 Hypothetical protein [Arabidopsis thaliana] gi|13877607|gb|AAK43881.1|AF370504_1 Unknown protein [Arabidopsis thaliana] gi|20148713|gb|AAM10247.1| unknown protein [Arabidopsis thaliana] gi|21592397|gb|AAM64348.1| unknown [Arabidopsis thaliana] gi|332191612|gb|AEE29733.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/283 (61%), Positives = 213/283 (75%), Gaps = 24/283 (8%)

Query: 48  FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
           F P+  WRS++                R FF S L ++  K  +  + +V F  +QFP++
Sbjct: 64  FDPSQLWRSEK---------------IRGFFASALGNKAVKLGNLVESRVGFIGSQFPKK 108

Query: 106 SF-----ASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
            F     + F+ R W+ WL+     +VV GL+IAN  VF++WR+ + +FM NNF ISLDN
Sbjct: 109 GFEFQRFSGFQRRGWKHWLQGLSDRDVVLGLVIANAGVFVMWRVFNQQFMMNNFMISLDN 168

Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
           F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R  GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FKSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228

Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
           L++HA++A +S K QG +V DPSRTP LGASGAVNAIMLLDIFL+P+ATLY +FFIPVPA
Sbjct: 229 LIHHAYMAATSPKGQGAFVRDPSRTPGLGASGAVNAIMLLDIFLHPRATLYLEFFIPVPA 288

Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
            LLG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844814|ref|XP_002890288.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297336130|gb|EFH66547.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 171/283 (60%), Positives = 210/283 (74%), Gaps = 24/283 (8%)

Query: 48  FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
           F P+  WRS+                 R FF + L ++  K  +  + +V F  +QFP++
Sbjct: 64  FDPSQLWRSET---------------IRGFFATALGNKAVKLGNLVESRVGFIGSQFPKK 108

Query: 106 SF-----ASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
            F     + F+ R W+ WL+     +VV GL+IANT VFM+WR+ + +FM  NF ISLDN
Sbjct: 109 GFEFERFSGFQRRGWKHWLQGLSDRDVVLGLVIANTGVFMMWRVFNQQFMMKNFMISLDN 168

Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
           F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R  GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FTSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228

Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPA 278
           L++HA++A +S K QG ++ DPSRTP LGASGAVNAIMLLDIFL+P ATLY +F IPVPA
Sbjct: 229 LIHHAYMATTSPKGQGAFMRDPSRTPGLGASGAVNAIMLLDIFLHPTATLYLEFIIPVPA 288

Query: 279 FLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 321
            LLG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513475|ref|XP_003525439.1| PREDICTED: uncharacterized protein C13E7.11-like [Glycine max]

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/263 (61%), Positives = 190/263 (72%), Gaps = 7/263 (2%)

Query: 49  HPTFSWRSQQSLSLKTHAFLFNPLLARRF-FTSLLSSQLRKSFFDGKV---LFFRAQFPE 104
           HP   + S +S S K  AFL  P+++R F F  LL    R      +     F R  F  
Sbjct: 58  HPLHHFHSCRSFSTKFRAFLSQPMISRHFAFNPLLRVSARSLQIGCRPSLHYFIRHNFNF 117

Query: 105 RSFASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
                F  R WRSWLR   ++++V GLIIAN A+F+LWRIAD  FM  NFTISLDNF SG
Sbjct: 118 SHNHDFSRRSWRSWLRGLTANDMVLGLIIANVAIFLLWRIADQNFMIKNFTISLDNFKSG 177

Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
           RLHTLIT+AFSH+D  HIVSNMIGLYFFGM+IGR  GPE+LLKLY+AGA+GGSVFYL++ 
Sbjct: 178 RLHTLITNAFSHVDTWHIVSNMIGLYFFGMNIGRNFGPEFLLKLYLAGAVGGSVFYLIHQ 237

Query: 224 AFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGV 283
           A+ A +SK     +V  S+  ALGASGAVNA+MLLDIFL PKATLY DFFIPVPA LLG+
Sbjct: 238 AYKAQTSKDWRTMIV--SKELALGASGAVNAVMLLDIFLFPKATLYLDFFIPVPAVLLGI 295

Query: 284 FLIGKDMLRIIEGNSNISGSAHL 306
           FLIGKDMLRI+EGNS ISGSAHL
Sbjct: 296 FLIGKDMLRILEGNSQISGSAHL 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439341|ref|XP_004137444.1| PREDICTED: uncharacterized protein C13E7.11-like [Cucumis sativus]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 181/336 (53%), Positives = 219/336 (65%), Gaps = 12/336 (3%)

Query: 1   MQRLLSLKQLASKSNFLKNPTNFTFSKPFT--CHPNVQKRPLSSFSKHPFHPTFSWRSQQ 58
           M +L S K ++  SN   N  +      F+     + Q     SF   P        S  
Sbjct: 1   MNKLFSRKLVSRLSNSYANSLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSWSSH 60

Query: 59  S-LSLKTHAFLFNPLLARRFFTSLLSSQLR---KSFFDGKVLFFRAQFPERSFA---SFR 111
              + K H F   P++ +RF  +  ++  +   KS  + + LF    F +  F     F 
Sbjct: 61  RSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFV 120

Query: 112 YRW---RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
           ++W   RSW ++   +EVV GLIIAN AVF+LWRIADP FM+ NFTISL+N  SGR+HTL
Sbjct: 121 HQWGGRRSWFQRLTPNEVVLGLIIANVAVFLLWRIADPIFMSKNFTISLENVRSGRIHTL 180

Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
           ITSAFSHID  HIVSNM+GLYFFGM+IG   G E+LLKLY+AGAIGGS FYL +H F A+
Sbjct: 181 ITSAFSHIDTGHIVSNMVGLYFFGMNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQAL 240

Query: 229 SSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGK 288
           SSK +  W  DP R   LGASGAVNAIMLLDIFL PKATLY  FFIPVPA LLG+FLIGK
Sbjct: 241 SSKSRSFWGEDPVRAKGLGASGAVNAIMLLDIFLFPKATLYLQFFIPVPAILLGIFLIGK 300

Query: 289 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
           DMLR++E +S ISGSAHLGGAAVAALAWAR+RR  F
Sbjct: 301 DMLRMLENDSQISGSAHLGGAAVAALAWARVRRGRF 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790859|emb|CAN61730.1| hypothetical protein VITISV_019858 [Vitis vinifera]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/333 (50%), Positives = 202/333 (60%), Gaps = 52/333 (15%)

Query: 1   MQRLLSLKQLASKSN-FLKNPTNFTFSKPFTCHPNV-QKRP---LSSFSKHPFHPTFSWR 55
           MQRL+SLK  +  S      P++   S P+    ++ Q  P   L + S  P  P F W 
Sbjct: 1   MQRLISLKVASDISRRVFTKPSSLLHSHPYKTFFSLSQPSPTHHLHTTSLIP-PPHFPWP 59

Query: 56  SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA------S 109
           S   LS   + F+ NP L ++F  + L     K+    +V F RAQFP RSF       S
Sbjct: 60  SHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSPSFDS 119

Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
           +  RWRSWL    +++VV GLIIAN AVFMLWRI+D +FM NNFTI              
Sbjct: 120 YGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTI-------------- 165

Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
                                     GR  GPE+LLKLY+AGA+ GSVFYLV+HAF+A S
Sbjct: 166 --------------------------GRVFGPEFLLKLYLAGAVVGSVFYLVHHAFMAPS 199

Query: 230 SKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKD 289
           SK Q MW ++PS  P LGASGAVNAIMLLDIFL P++TLY +FFIPVPA LLG+FLIGKD
Sbjct: 200 SKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFLIGKD 259

Query: 290 MLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
           MLRIIEG+  ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 260 MLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547155|ref|XP_002514635.1| conserved hypothetical protein [Ricinus communis] gi|223546239|gb|EEF47741.1| conserved hypothetical protein [Ricinus communis]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 158/186 (84%), Gaps = 5/186 (2%)

Query: 143 IADPKFMANNFT----ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
           + DP       T    ISLDNF SGR+HTLITSAFSHI++EHI+SNMIGLYFFG  I R+
Sbjct: 11  VVDPSLYEQGGTLFGLISLDNFKSGRVHTLITSAFSHINLEHIISNMIGLYFFGTKIARS 70

Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLL 258
            G EYLLKLY+AGAIGGS+FYLV+HAF+A+S+K   MW+ DPSRTP LGASGAVNA+MLL
Sbjct: 71  FGHEYLLKLYVAGAIGGSLFYLVHHAFMALSTKEHRMWM-DPSRTPGLGASGAVNAVMLL 129

Query: 259 DIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR 318
           DIFL+P+ATLY ++ IPVPA LLG+FLIGKD+LRIIEGNSNISGSAHLGGAAVAA+A+AR
Sbjct: 130 DIFLDPRATLYLNYIIPVPAILLGIFLIGKDVLRIIEGNSNISGSAHLGGAAVAAIAFAR 189

Query: 319 IRRRGF 324
           I++  F
Sbjct: 190 IKKGRF 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294462624|gb|ADE76858.1| unknown [Picea sitchensis]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/255 (54%), Positives = 170/255 (66%), Gaps = 16/255 (6%)

Query: 75  RRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-------VV 127
           RR  T  L S   K   DG   F R     RS+    Y   S  R+Y           VV
Sbjct: 65  RRLITVRLGSL--KDMRDGGDAFIRNLV--RSY----YNRLSGFRRYSRGSLFSSHDGVV 116

Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
           + LI  N AVF LWR AD +FM NNF IS+DNFLSGR+HTL+T AFSHI  +H++SNMIG
Sbjct: 117 WSLIGVNIAVFFLWRHADRRFMENNFKISVDNFLSGRVHTLLTCAFSHIMSDHLLSNMIG 176

Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP-AL 246
           LYFFG ++G  LG EYLLKLY+AGA+GGS+ +L+  AF+    +       +P  TP AL
Sbjct: 177 LYFFGSAVGSFLGAEYLLKLYLAGALGGSIMFLINQAFIVPWLEGSSRKYYNPRYTPGAL 236

Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHL 306
           GASGAVNAI+LLDIFL PKA  Y +FFIPVPA LLG  +IG+D+  + +G++ ISG+AHL
Sbjct: 237 GASGAVNAIILLDIFLFPKAIHYLNFFIPVPAMLLGAIIIGRDLWMVKQGDTQISGAAHL 296

Query: 307 GGAAVAALAWARIRR 321
           GGA VAALAWA+I+R
Sbjct: 297 GGALVAALAWAKIKR 311

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2027448	336	RBL12 "RHOMBOID-like protein 1	0.700	0.675	0.635	4.5e-75
TAIR|locus:2037333	322	AT1G74130 [Arabidopsis thalian	0.679	0.683	0.434	1.6e-45
TAIR|locus:2037328	320	AT1G74140 [Arabidopsis thalian	0.660	0.668	0.434	4.6e-41
DICTYBASE|DDB_G0284937	341	DDB_G0284937 "rhomboid family	0.462	0.439	0.367	6.3e-15
SGD|S000003333	346	PCP1 "Mitochondrial serine pro	0.450	0.421	0.335	6.2e-12
UNIPROTKB|E2RQQ1	379	PARL "Uncharacterized protein"	0.558	0.477	0.300	8.8e-10
UNIPROTKB|Q9H300	379	PARL "Presenilins-associated r	0.558	0.477	0.300	1.1e-09
POMBASE|SPBC13E7.11	298	SPBC13E7.11 "mitochondrial rho	0.561	0.610	0.276	1.3e-09
UNIPROTKB|Q2KHV4	377	PARL "Presenilins-associated r	0.558	0.480	0.300	1.5e-09
MGI|MGI:1277152	377	Parl "presenilin associated, r	0.558	0.480	0.300	1.5e-09

TAIR|locus:2027448 RBL12 "RHOMBOID-like protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 150/236 (63%), Positives = 185/236 (78%)

Query:    75 RRFFTSLLSSQLRK--SFFDGKVLFFRAQFPERSF-----ASFRYR-WRSWLRQYGSSEV 126
             R FF S L ++  K  +  + +V F  +QFP++ F     + F+ R W+ WL+     +V
Sbjct:    76 RGFFASALGNKAVKLGNLVESRVGFIGSQFPKKGFEFQRFSGFQRRGWKHWLQGLSDRDV 135

Query:   127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
             V GL+IAN  VF++WR+ + +FM NNF ISLDNF SGRLHTLITSAFSHID+ HIVSNMI
Sbjct:   136 VLGLVIANAGVFVMWRVFNQQFMMNNFMISLDNFKSGRLHTLITSAFSHIDIGHIVSNMI 195

Query:   187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS-KRQGMWVVDPSRTPA 245
             GLYFFG SI R  GP++LLKLY+AGA+GGSVFYL++HA++A +S K QG +V DPSRTP 
Sbjct:   196 GLYFFGTSIARNFGPQFLLKLYLAGALGGSVFYLIHHAYMAATSPKGQGAFVRDPSRTPG 255

Query:   246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNIS 301
             LGASGAVNAIMLLDIFL+P+ATLY +FFIPVPA LLG+FLIGKD+LRI EGNSNIS
Sbjct:   256 LGASGAVNAIMLLDIFLHPRATLYLEFFIPVPAMLLGIFLIGKDILRITEGNSNIS 311

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2037333 AT1G74130 [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 103/237 (43%), Positives = 148/237 (62%)

Query:    77 FFTSLL-SSQLRKSF---FDGKVLFFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEV 126
             FF   L ++ L+  F    + +  FF ++ P   F S     F+ R W+SW+   G++ V
Sbjct:    60 FFAGKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGV 117

Query:   127 VYGLIIANTAVFMLWRIA--DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
             V+GL+IAN AVF +WR+   D  +M  NF +S  +F++GR+HTLITS FSH+   HI+ N
Sbjct:   118 VFGLVIANAAVFTMWRVLGKDNMWMVKNFMLSRYSFMTGRIHTLITSGFSHVGATHIILN 177

Query:   185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
             M+GL +FG  I R+ GP YLLKLY AGA+GGSVF+L  HA   +S K Q +   D  + P
Sbjct:   178 MMGLCYFGARIARSFGPRYLLKLYFAGALGGSVFFLSSHALSVISLKGQRVVPKDQLKVP 237

Query:   245 A--LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN 299
                LGA+G V AI LLD+ L PK T YF   + VP F  G++ +G ++++++EG +N
Sbjct:   238 IGKLGANGPVYAITLLDMLLYPKVTTYFGLMLRVPVFA-GIYSLGLNIIKMLEGKNN 293

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2037328 AT1G74140 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 103/237 (43%), Positives = 144/237 (60%)

Query:    77 FFTSLL-SSQLRKSF---FDGKVLFFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEV 126
             FF S L ++ L+  F    + +  FF ++ P   F S     F+ R W+SW+   G++ V
Sbjct:    66 FFASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGV 123

Query:   127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
             V+GL+IAN AVF +WR++D  +M + ++     F SG +HTLITS FSHI    I+ NMI
Sbjct:   124 VFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIHTLITSGFSHIGTSQIILNMI 178

Query:   187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT-PA 245
             G+ +FG  I RTLGP YLLKLY AGA+GGSV +L YHA LA + K +G+ + D   T P 
Sbjct:   179 GISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALLA-TLKGEGVVIKDHQSTAPI 237

Query:   246 ---LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSN 299
                LGA G++ AI LLD+F+ PK T YF   + V   +  +  +G ++L I EG  N
Sbjct:   238 SQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHV-MFRIINLGVEILNIPEGGPN 293

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0284937 DDB_G0284937 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 205 (77.2 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 61/166 (36%), Positives = 85/166 (51%)

Query:   123 SSEVVYGLIIANTAVFMLWRIADP----KFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
             SS V+Y +I  N A++M     D     + +  NF +SLDNF S  + TL+TS F+H D 
Sbjct:   142 SSSVIYAIIGINVAIWMFLNSDDSYSFQRMIGKNFMLSLDNFKSQPI-TLLTSMFAHTDG 200

Query:   179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
              H++  M  LY  G ++  +LG      +YM   I   V +L    F   +SK       
Sbjct:   201 FHLL--MFALYSLGPNVLYSLGSSAFFGMYMGAGILSGVGFLAVQKFY--NSKNY----Y 252

Query:   239 DPSR---TPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLL 281
             D  R   T ALGASGA++ +++L   L P+ TL     IPVPA LL
Sbjct:   253 DQKRLQNTRALGASGAISGVLMLFACLYPRMTLNIYGIIPVPAALL 298

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000003333 PCP1 "Mitochondrial serine protease" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 182 (69.1 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 54/161 (33%), Positives = 82/161 (50%)

Query:   126 VVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
             +VY L+  N AVF LW++    +F+     +  D +++ ++ ++I SAFSH +  H+  N
Sbjct:   145 LVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKD-YVTSKI-SIIGSAFSHQEFWHLGMN 202

Query:   185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
             M+ L+ FG S+   LG      LYM  AI GS+F L Y     ++       +V PS   
Sbjct:   203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKLARLA-------IVGPS--- 252

Query:   245 ALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFL 285
              LGASGA+  ++    +L P A +   F  PVP      FL
Sbjct:   253 -LGASGALFGVLGCFSYLFPHAKILL-FVFPVPGGAWVAFL 291

GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0006465 "signal peptide processing" evidence=IMP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0010821 "regulation of mitochondrion organization" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|E2RQQ1 PARL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 62/206 (30%), Positives = 95/206 (46%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF 
Sbjct:   124 LKSRVQ-SYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFC 181

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   182 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 238

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM 256
              LG E  + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++
Sbjct:   239 ILGQEQFMAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVL 284

Query:   257 LLDIFLNPKATLYFDFFIPVPAFLLG 282
                    P+  L    F+P+  F  G
Sbjct:   285 AAVCTKIPEGRLAI-IFLPMFTFTAG 309

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q9H300 PARL "Presenilins-associated rhomboid-like protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 62/206 (30%), Positives = 95/206 (46%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF 
Sbjct:   124 LKSRVQ-SYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFC 181

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   182 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 238

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM 256
              LG E  + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++
Sbjct:   239 ILGQEQFMAVYLSAGVISNFVSYVG-----KVATGRYG---------PSLGASGAIMTVL 284

Query:   257 LLDIFLNPKATLYFDFFIPVPAFLLG 282
                    P+  L    F+P+  F  G
Sbjct:   285 AAVCTKIPEGRLAI-IFLPMFTFTAG 309

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

POMBASE|SPBC13E7.11 SPBC13E7.11 "mitochondrial rhomboid protease (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 161 (61.7 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 55/199 (27%), Positives = 93/199 (46%)

Query:    93 GKVLFFRAQFPERSFASF-RYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFM-A 150
             G   F+ A + ++   ++ +  +   + Q  S  +V  +I  N  VF LWR   P+F   
Sbjct:    45 GSATFYTANYLDKRRKNYPKSSYGFPIPQTSSRSLVLSIIGINVGVFALWRA--PRFSHL 102

Query:   151 NNFT--ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
             N F    ++ N +   + ++I SAFSH    H++ NM+  Y F  +I    G    +  Y
Sbjct:   103 NRFLQKYAVMNPIFINMPSMIVSAFSHQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFY 162

Query:   209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATL 268
             ++  +  +V  L++H  L   +K      V P    +LGASGA+ AI     +  P A++
Sbjct:   163 ISSILFSNVASLLHHR-LRFGTK------VTPG---SLGASGAIYAIAAATSYFFPNASV 212

Query:   269 YFDFFIPVPAFLLGVFLIG 287
                 F+P     +GV L+G
Sbjct:   213 SI-IFLPFIPIKIGVALLG 230

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006465 "signal peptide processing" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0045041 "protein import into mitochondrial intermembrane space" evidence=ISO

UNIPROTKB|Q2KHV4 PARL "Presenilins-associated rhomboid-like protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 62/206 (30%), Positives = 95/206 (46%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF 
Sbjct:   122 LKSKVQ-SYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFC 179

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   180 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 236

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM 256
              LG E  + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++
Sbjct:   237 ILGQEQFMAVYLSAGVISTFVSYVC-----KVATGRYG---------PSLGASGAIMTVL 282

Query:   257 LLDIFLNPKATLYFDFFIPVPAFLLG 282
                    P+  L    F+P+  F  G
Sbjct:   283 AAVCTKIPEGRLAI-IFLPMFTFTAG 307

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:1277152 Parl "presenilin associated, rhomboid-like" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 62/206 (30%), Positives = 95/206 (46%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF 
Sbjct:   122 LKSRVQ-SYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFC 179

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   180 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 236

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIM 256
              LG E  + +Y+ AG I   V Y+       +++ R G         P+LGASGA+  ++
Sbjct:   237 ILGQEQFVAVYLSAGVISNFVSYVC-----KVATGRYG---------PSLGASGAIMTVL 282

Query:   257 LLDIFLNPKATLYFDFFIPVPAFLLG 282
                    P+  L    F+PV  F  G
Sbjct:   283 AAVCTKIPEGRLAI-IFLPVFTFTAG 307

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	6e-23
COG0705	228	COG0705, COG0705, Membrane associated serine prote	9e-15

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 92.3 bits (230), Expect = 6e-23
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 20/160 (12%)

Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
           G+L  LITS F H    H++ NM+ L FFG+ + R LG    L LY+   + GS+     
Sbjct: 5   GQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLLS--- 61

Query: 223 HAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG 282
                        ++  P+ +P++GASGA+  ++   + L P+  +    F      LLG
Sbjct: 62  -------------YLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLG 108

Query: 283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 322
           + L+   +  +      IS  AHLGG     L    + RR
Sbjct: 109 IILLNLLLGFLP----GISNFAHLGGLIAGLLLGFLLLRR 144

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 72.1 bits (177), Expect = 9e-15
 Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 27/211 (12%)

Query: 126 VVYGLIIANTAVFML--------WRIADPKFMANNFTISLDNFLSGR--LHTLITSAFSH 175
           V   LI+ N  VF+L          +    F               R  L  LIT+ F H
Sbjct: 19  VTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLH 78

Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
               H++ NM+ L+ FG ++ R LG    L  Y+   +   +  +++             
Sbjct: 79  AGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFG------------ 126

Query: 236 WVVDPSRTPALGASGAVNAIMLLDIFLNPKA-TLYFDFFIPVPA-FLLGVFLIGKDMLRI 293
                   P+LGASGA+  ++     L P A  L     +P PA  L+ ++L+       
Sbjct: 127 ---PKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGA 183

Query: 294 IEGNSNISGSAHLGGAAVAALAWARIRRRGF 324
                +++ SAHLGG     L  A + R+  
Sbjct: 184 GSFGPSVAWSAHLGGLIGGLLLAALLSRKLR 214

Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
PTZ00101	278	rhomboid-1 protease; Provisional	99.91
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.9
COG0705	228	Membrane associated serine protease [Amino acid tr	99.87
KOG2980	310	consensus Integral membrane protease of the rhombo	99.86
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.82
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.72
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.7
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.24
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	99.19
KOG0858	239	consensus Predicted membrane protein [Function unk	99.08
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.61
KOG2890	326	consensus Predicted membrane protein [Function unk	98.13
COG5291	313	Predicted membrane protein [Function unknown]	98.01
KOG4463	323	consensus Uncharacterized conserved protein [Funct	88.88

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.91  E-value=2.4e-26  Score=213.72  Aligned_cols=185  Identities=16%  Similarity=0.149  Sum_probs=132.9

Q ss_pred             HHHHhhhCCCCeEEeeeeeccceeeeehccCc--------cccccceeEeeccccccchhhhhhhcccccchhHHHhhhh
Q 020597          115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADP--------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI  186 (324)
Q Consensus       115 ~~w~~~~~~~~vt~~li~inv~vfll~~~~~~--------~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~  186 (324)
                      +.-++++..+.++..++++++++|++....++        +.+.+..+..+..+.++|+||++|+.|+|.++.|+++||+
T Consensus        44 er~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~  123 (278)
T PTZ00101         44 NLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVF  123 (278)
T ss_pred             HHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHH
Confidence            44567778889999999999999987554221        1233344567777788999999999999999999999999


Q ss_pred             hhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhc---C
Q 020597          187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL---N  263 (324)
Q Consensus       187 ~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~---~  263 (324)
                      .++.+|..+|+.+|+.|++.+|+++|++|++++....                 +...++||||+++|+++++...   .
T Consensus       124 ~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~-----------------~~~~svGASgAifGLiGa~~~~lil~  186 (278)
T PTZ00101        124 FQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVT-----------------YCPIKVGASTSGMGLLGIVTSELILL  186 (278)
T ss_pred             HHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHc-----------------cCCcEEehhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876542                 1245799999999999987532   1


Q ss_pred             CceeEEEEeeechhhHHHhHhhccccee-eeecCCCCcccccccchHHHHHHHHHHHhh
Q 020597          264 PKATLYFDFFIPVPAFLLGVFLIGKDML-RIIEGNSNISGSAHLGGAAVAALAWARIRR  321 (324)
Q Consensus       264 p~~~~~l~~~i~ip~~~l~~~~l~~~l~-~~~~~~~~vs~~aHLgG~l~G~l~~~~~r~  321 (324)
                      .....     .+.........++.+.+. ......+++|+.||+||+++|++++..+.+
T Consensus       187 w~~~~-----~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~  240 (278)
T PTZ00101        187 WHVIR-----HRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNS  240 (278)
T ss_pred             HHhhc-----cHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            11000     010000000011111111 111124789999999999999998876654

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.90  E-value=9.2e-26  Score=210.11  Aligned_cols=176  Identities=19%  Similarity=0.241  Sum_probs=126.2

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~  202 (324)
                      ..|+|..++++|++||++..+........+.....+....+|+||++|++|+|.|+.|+++||+++|.+|..+|+.+|+.
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~  172 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSG  172 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence            56789999999999999876654333333333333334578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHh
Q 020597          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG  282 (324)
Q Consensus       203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~  282 (324)
                      +++.+|+++++++++.+....                  ....+|+||++||++++......+.+..- ..+|.+...+.
T Consensus       173 ~~l~l~l~s~i~~~~~~~~~~------------------~~~~gGaSGvVygL~g~~~~~~~~~p~~~-~~lp~~~~~f~  233 (276)
T PRK10907        173 KLIVITLISALLSGWVQSKFS------------------GPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLPRGLIAFA  233 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc------------------cchhhHHHHHHHHHHHHHHHHhccccccc-hhhhHHHHHHH
Confidence            999999999999998865531                  13468999999999998655432211110 11233333222


Q ss_pred             HhhcccceeeeecCCCCcccccccchHHHHHHHHHHH
Q 020597          283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI  319 (324)
Q Consensus       283 ~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~  319 (324)
                      ++.+.......  ..++|++.||++|+++|++++...
T Consensus       234 llwl~~g~~~~--~g~~Ian~AHlgGli~Gll~g~~~  268 (276)
T PRK10907        234 LLWLVAGYFDL--FGMSIANAAHVAGLAVGLAMAFWD  268 (276)
T ss_pred             HHHHHHHHHHc--cCcccHHHHHHHHHHHHHHHHHHh
Confidence            22222212211  135799999999999999887644

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.87  E-value=2.6e-24  Score=195.58  Aligned_cols=184  Identities=28%  Similarity=0.399  Sum_probs=139.9

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccc------cceeEeeccccc--c--chhhhhhhcccccchhHHHhhhhhhhhhc
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMA------NNFTISLDNFLS--G--RLHTLITSAFSHIDVEHIVSNMIGLYFFG  192 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~------~~f~l~p~~i~~--g--q~WrLlTs~F~H~~~~HLl~Nm~~L~~fG  192 (324)
                      .++.+..++++|+++|+...........      ..+...|.....  +  |+||++|++|+|.++.|+++||+.+|.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            4567788999999999876554322111      123334433321  1  89999999999999999999999999999


Q ss_pred             cccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEe
Q 020597          193 MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDF  272 (324)
Q Consensus       193 ~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~  272 (324)
                      ..+|+.+|+.+|+.+|+++++++++.+.....               ....+.+||||+++|++++++...|..+.....
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~---------------~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~  160 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGP---------------KGGAPSLGASGAIFGLLGAYFLLFPFARILLLF  160 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcc---------------cccCcccchhHHHHHHHHHHHHHccccchhhhh
Confidence            99999999999999999999999998655421               112579999999999999999999998776654


Q ss_pred             e-echhhHHHhHhhcccceeeeecCC-CCcccccccchHHHHHHHHHHHhh
Q 020597          273 F-IPVPAFLLGVFLIGKDMLRIIEGN-SNISGSAHLGGAAVAALAWARIRR  321 (324)
Q Consensus       273 ~-i~ip~~~l~~~~l~~~l~~~~~~~-~~vs~~aHLgG~l~G~l~~~~~r~  321 (324)
                      . ++.++..+..+.+..+++....+. ++|++.||++|+++|.+++....+
T Consensus       161 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~  211 (228)
T COG0705         161 LSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSR  211 (228)
T ss_pred             ccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4 566666555555555555433322 368999999999999998876654

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=99.86  E-value=2.5e-22  Score=184.72  Aligned_cols=248  Identities=31%  Similarity=0.475  Sum_probs=186.6

Q ss_pred             ccccccccccchhhhhhhHHHHHHHHHHhHHH-HhhhhcCceEEEEEeccccchhh------hhhhhHHHHHhhhCCCCe
Q 020597           54 WRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQ-LRKSFFDGKVLFFRAQFPERSFA------SFRYRWRSWLRQYGSSEV  126 (324)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~w~~~~~~~~v  126 (324)
                      -++...++.+++++|..       .+++...+ +..+..|.+.+|+-+..|..+.+      .+++.++.|.+..+  .+
T Consensus        47 ~p~~~~r~~~~~g~fa~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~f~~F~~~~~k~w~~~~~--g~  117 (310)
T KOG2980|consen   47 PPSVVSRSAKTHGFFAS-------ALGNTNLKLKFGNLVESRVGFFGSLLPSHGFEFGGFTGFQKRGWKHWISGAN--GV  117 (310)
T ss_pred             CcccccccccCcceeec-------cchhhHHHHHhccccceeeEeecccCchhccccCCcccceecchHHHhhcCC--cc
Confidence            36788888888888833       33444443 44577889999998888765433      44666778877733  48


Q ss_pred             EEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhcc-ccccccChHHHH
Q 020597          127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGM-SIGRTLGPEYLL  205 (324)
Q Consensus       127 t~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~-~lE~~~G~~~fl  205 (324)
                      +++++++|+++|.+|++...+.+...+.++... ..--+|.+++|.|.|.+.+|+..||+.++.+.. .+....|...+.
T Consensus       118 v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~-~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~  196 (310)
T KOG2980|consen  118 VFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNA-YKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFF  196 (310)
T ss_pred             hhHHHHHHHHHHHHHHhcchhhhhhhHHhhccc-ccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcc
Confidence            999999999999999998654433333333222 223577899999999999999999999999988 888899999999


Q ss_pred             HHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHH--HhH
Q 020597          206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--LGV  283 (324)
Q Consensus       206 ~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~--l~~  283 (324)
                      ++|+.++..+........ ..            ..+..+.+||||+++++.++++.++|+.+.++.++.++|...  ..-
T Consensus       197 AlylSa~~~~~~i~~~~~-v~------------~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~  263 (310)
T KOG2980|consen  197 ALYLSAGVKGLFISVKDK-VP------------TSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFK  263 (310)
T ss_pred             cceeccccccceeEeecc-cc------------ccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHH
Confidence            999966666655443321 10            124567899999999999999999999999999999988742  223


Q ss_pred             hhcccceeeeecCCCCcccccccchHHHHHHH----HHHHhhcCC
Q 020597          284 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALA----WARIRRRGF  324 (324)
Q Consensus       284 ~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~----~~~~r~gRf  324 (324)
                      +++.+++..+..++.+.++.||++|.+.|..+    +..++|||+
T Consensus       264 ~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~kgR~  308 (310)
T KOG2980|consen  264 AIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIRKGRF  308 (310)
T ss_pred             HHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHHcCcc
Confidence            55667777777778888999999999998765    457788885

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.82  E-value=1.6e-21  Score=164.19  Aligned_cols=143  Identities=31%  Similarity=0.466  Sum_probs=102.6

Q ss_pred             cccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCC
Q 020597          161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP  240 (324)
Q Consensus       161 ~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~  240 (324)
                      .++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|+.++..+|+++++++++...+...                
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~----------------   65 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSP----------------   65 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccc----------------
Confidence            4689999999999999999999999999999999999999999999999999999988766531                


Q ss_pred             CCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHHHh
Q 020597          241 SRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIR  320 (324)
Q Consensus       241 ~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~r  320 (324)
                      ...+.+|+||+++|++++.....|+.+.....  +..........+...+....  .+++++.+|++|+++|++++..++
T Consensus        66 ~~~~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~hl~G~~~G~~~~~~~~  141 (145)
T PF01694_consen   66 PNQPYVGASGAVFGLLGAFLFLYPQNKKRLRF--IYLALVVPIIVLVIILLLGF--IPNISFLGHLGGFLAGLLYGFLIL  141 (145)
T ss_dssp             S-----SSHHHHHHHHHHHHHHHHCCCCCS-----HCCCCCCCCCCCHHHCTSS--SSTTTHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCCcccchHHHHHHHHHHhhccchhhc--chHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence            12268999999999999999888776543321  11111111111111111111  578899999999999999999988


Q ss_pred             hcC
Q 020597          321 RRG  323 (324)
Q Consensus       321 ~gR  323 (324)
                      |+|
T Consensus       142 ~~~  144 (145)
T PF01694_consen  142 RRP  144 (145)
T ss_dssp             H--
T ss_pred             Hcc
Confidence            875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.72  E-value=4.2e-19  Score=161.02  Aligned_cols=179  Identities=19%  Similarity=0.199  Sum_probs=144.1

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccC-h
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-P  201 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G-~  201 (324)
                      .|..|..++.++.++|+.......   .+.+.+..+.+.+.|+||++||+++|.+..|+++||+.+|.+|...|+..| +
T Consensus        14 ~p~~ts~~~~~~~~i~lv~~~~~i---~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t   90 (258)
T KOG2632|consen   14 IPLLTSIVVVLAILIYLVSFFPGI---VEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTT   90 (258)
T ss_pred             chHHHHHHHHHHHHHHHHhccchh---hhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccce
Confidence            556677777777777765444332   244566777788899999999999999999999999999999999999999 7


Q ss_pred             HHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeC-CCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHH
Q 020597          202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVD-PSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL  280 (324)
Q Consensus       202 ~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~-~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~  280 (324)
                      .+++.+..+.++..++++++.......         .| -++..++|.||+.+++++......|..+...++...+|+++
T Consensus        91 ~~~l~~~~llalf~gIl~ll~~~~~~~---------~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l  161 (258)
T KOG2632|consen   91 VRILMFTVLLALFSGILYLLAYHVFLL---------SDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVL  161 (258)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHhh---------cchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHH
Confidence            888888889999999998887642221         11 13445899999999999999999999887777788899998


Q ss_pred             HhHhhcccceeeeecCCCCcccccccchHHHHHHHHH
Q 020597          281 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA  317 (324)
Q Consensus       281 l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~  317 (324)
                      .+++.++...+.    .|+.|+.+|++|+++|+.|.+
T Consensus       162 ~Pw~lLi~~~~l----vp~aSFlghl~GllvG~ay~~  194 (258)
T KOG2632|consen  162 APWALLIATQIL----VPQASFLGHLCGLLVGYAYAF  194 (258)
T ss_pred             HHHHHHHHHHHH----ccCchHHHHHHHHHHHHHHHH
Confidence            888766655443    378999999999999999877

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.70  E-value=8.7e-19  Score=164.75  Aligned_cols=138  Identities=22%  Similarity=0.303  Sum_probs=101.9

Q ss_pred             cccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeee
Q 020597          159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV  238 (324)
Q Consensus       159 ~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~  238 (324)
                      ....+|+||++|++|+|.++.|+++||+.+..+|..+|+..|..|+..+|++++++|++++.+..               
T Consensus       113 ~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d---------------  177 (316)
T KOG2289|consen  113 PVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFD---------------  177 (316)
T ss_pred             hhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhc---------------
Confidence            44668999999999999999999999999999999999999999999999999999999988752               


Q ss_pred             CCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHH--HhHhhcccceeeeecCCCCcccccccchHHHHHHHH
Q 020597          239 DPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFL--LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW  316 (324)
Q Consensus       239 ~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~--l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~  316 (324)
                        ++..++||||++||++++...---......  --+..+..  +.++.+.+++-    ..+.++..+|+||.+.|..++
T Consensus       178 --~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m--~~~~~~l~~ll~Ii~i~l~~G----~~~~~~~~~h~gg~~~G~~~~  249 (316)
T KOG2289|consen  178 --PNSISVGASGGVFALLGAHLSNLLTNWTIM--KNKFAALRTLLIIIFINLDLG----FAPYVDNFAHIGGLLAGFLLG  249 (316)
T ss_pred             --cCCceecccHHHHHHHHHHHHHHHhhHHHh--cchHHHHHHHHHHHHHHHhhc----cccceeccccccccCCCcchh
Confidence              467799999999999998864321111100  00111111  11122222222    135678899999999888776


Q ss_pred             HHH
Q 020597          317 ARI  319 (324)
Q Consensus       317 ~~~  319 (324)
                      +..
T Consensus       250 fil  252 (316)
T KOG2289|consen  250 FVL  252 (316)
T ss_pred             HHh
Confidence            644

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.24  E-value=1.4e-12  Score=125.75  Aligned_cols=134  Identities=16%  Similarity=0.106  Sum_probs=101.3

Q ss_pred             ccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCC
Q 020597          162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS  241 (324)
Q Consensus       162 ~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~  241 (324)
                      +.|.||++||.|+|.++.|++..|...+.+-+-+|+..|..|...+|+++|+.|++++.++.                 +
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFl-----------------p  510 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFL-----------------P  510 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeee-----------------c
Confidence            36999999999999999999999999999999999999999999999999999999987753                 3


Q ss_pred             CCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHH
Q 020597          242 RTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA  317 (324)
Q Consensus       242 ~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~  317 (324)
                      +.+.+|.||+-+|+++...+-..+.+..+    .-|...+.=++....++.+ ...|.||++||+.|.++|++...
T Consensus       511 Y~~eVgPa~sQ~Gila~l~vEl~qs~~il----~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~  581 (652)
T KOG2290|consen  511 YRAEVGPAGSQFGILACLFVELFQSWQIL----ERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSI  581 (652)
T ss_pred             cccccCCcccccchHHHHHHHHHhhhHhh----hhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHH
Confidence            56789999999999988876544443322    2232211100000001111 12478999999999999987544

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=99.19  E-value=2.1e-12  Score=115.22  Aligned_cols=174  Identities=20%  Similarity=0.110  Sum_probs=126.2

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccccceeEeeccc-cccchhhhhhhcccccch-hHHHhhhhhhhhhcccccccc-
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHIDV-EHIVSNMIGLYFFGMSIGRTL-  199 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i-~~gq~WrLlTs~F~H~~~-~HLl~Nm~~L~~fG~~lE~~~-  199 (324)
                      .||+|+.+++..+++.++....--+  ..+..++++.+ .+.|+||++|+.|.-++. .+.++|++.++..++.+|+.. 
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~--~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f   78 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIIS--PYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHF   78 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCC--HHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCC
Confidence            3678888777777777665443111  12334666665 468999999999998777 899999999999999999983 


Q ss_pred             -Ch-HHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechh
Q 020597          200 -GP-EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVP  277 (324)
Q Consensus       200 -G~-~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip  277 (324)
                       ++ ..|+.+.+.+++.-.++..+....              ..+.+.+ .++.+..++..++..+|+.++.+++++++|
T Consensus        79 ~~~~ady~~~ll~~~~~i~~~~~~~~~~--------------~~~~~~l-~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~  143 (197)
T PF04511_consen   79 QGRSADYLWFLLFGASLILILSLLIGPY--------------FFNIPFL-GSSLSFALTYIWSRKNPNAQVSFFGLFTIK  143 (197)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhccc--------------hhHHHHH-HHHHHHHHHHHHHHhCcccceeeEEEEEEC
Confidence             33 567777666555544444332100              0011123 355788888999999999999999999999


Q ss_pred             hHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHH
Q 020597          278 AFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR  318 (324)
Q Consensus       278 ~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~  318 (324)
                      +++++++.++++++..     +-+...++.|+++|++|+.+
T Consensus       144 a~ylP~~~~~~~~l~~-----~~~~~~~l~Gi~~Ghly~fl  179 (197)
T PF04511_consen  144 AKYLPWVLLAFSLLFG-----GSSPIPDLLGILVGHLYYFL  179 (197)
T ss_pred             hhhHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHH
Confidence            9999999888887652     22567999999999999875

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=99.08  E-value=1.4e-11  Score=110.83  Aligned_cols=172  Identities=18%  Similarity=0.081  Sum_probs=131.7

Q ss_pred             HHHHHhhhCCCCeEEeeeeeccceeeeehcc--CccccccceeEeeccc-cccchhhhhhhcccccc-hhHHHhhhhhhh
Q 020597          114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIA--DPKFMANNFTISLDNF-LSGRLHTLITSAFSHID-VEHIVSNMIGLY  189 (324)
Q Consensus       114 ~~~w~~~~~~~~vt~~li~inv~vfll~~~~--~~~~~~~~f~l~p~~i-~~gq~WrLlTs~F~H~~-~~HLl~Nm~~L~  189 (324)
                      ...|+.+  .|++|+....+|+++-++-.+.  ++.    +..++|+.+ .+.|+||++|+.+.-+. -+|.++||+.++
T Consensus         5 l~~~~~~--iPpVTR~~~~~~v~tt~~~~l~lIsP~----~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~Fly   78 (239)
T KOG0858|consen    5 LLNFYLQ--IPPVTRYYTTACVVTTLLVRLDLISPF----QLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLY   78 (239)
T ss_pred             HHHHHhc--CChHHHHHHHHHHHHHHHHhhcccCch----heEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHH
Confidence            4557777  8899999999999888775543  222    234566544 55699999999999988 499999999999


Q ss_pred             hhccccccccCh---HHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCce
Q 020597          190 FFGMSIGRTLGP---EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKA  266 (324)
Q Consensus       190 ~fG~~lE~~~G~---~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~  266 (324)
                      ..++.+|+..-+   ..|+.+.+.+++.-.+..+.....                   .+ .++.++.+...++..+|+.
T Consensus        79 rY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~~~-------------------fL-g~~l~~~l~YvWs~~Np~~  138 (239)
T KOG0858|consen   79 RYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVYIV-------------------FL-GQSLVFMLVYVWSKRNPDV  138 (239)
T ss_pred             HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-------------------HH-HHHHHHHHHHHHHhhCCCc
Confidence            999999986532   678887777777666554432211                   12 3456778889999999999


Q ss_pred             eEEEEeeechhhHHHhHhhcccceeeeecCCCCcccccccchHHHHHHHHH
Q 020597          267 TLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA  317 (324)
Q Consensus       267 ~~~l~~~i~ip~~~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~  317 (324)
                      ++.+++.+++++.++++++++++.+.-     +.+ ...+-|+++|++|.+
T Consensus       139 ~v~F~g~~~f~a~YlPwvll~fs~l~g-----~~~-~~dllGi~~GHiy~f  183 (239)
T KOG0858|consen  139 IVSFFGLITFKAPYLPWVLLGFSFLFG-----GSI-LVDLLGIIVGHIYYF  183 (239)
T ss_pred             eEEEEEEecCccccchHHHHHHHHHhC-----Cch-HHHHHhhhhheeEEE
Confidence            999999999999999999998887641     223 888999999988754

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.61  E-value=1.2e-08  Score=81.33  Aligned_cols=91  Identities=14%  Similarity=0.242  Sum_probs=72.8

Q ss_pred             chhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCC
Q 020597          164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT  243 (324)
Q Consensus       164 q~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~  243 (324)
                      ++|+++|+.|++.++..++.|...++..|+.+|+.||+++++.++++.++.++++..+....... ..++..++    ..
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~-i~~~~~~l----~~   81 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYA-ITGNESYL----FV   81 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCCCcee----EE
Confidence            79999999999999999999999999999999999999999999999999988887765543322 12211111    14


Q ss_pred             CCCCcccchhhhhhhh
Q 020597          244 PALGASGAVNAIMLLD  259 (324)
Q Consensus       244 ~~vGaSG~I~gll~~~  259 (324)
                      +.-|..|.+.|+++++
T Consensus        82 ~i~G~~~~~~g~lVa~   97 (99)
T PF08551_consen   82 PISGFMGVLAGFLVAF   97 (99)
T ss_pred             EecCcHHhHhheEEEE
Confidence            5678888888887764

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=98.13  E-value=1.1e-06  Score=81.86  Aligned_cols=153  Identities=18%  Similarity=0.083  Sum_probs=98.1

Q ss_pred             chhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCC
Q 020597          164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT  243 (324)
Q Consensus       164 q~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~  243 (324)
                      .+|+++|+.|+..+++-.+.|.+.|...|+.+|+.||..+++.+|.+.....+++......+ .+..+..-.++    ..
T Consensus        66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l-~Y~it~n~v~L----~~  140 (326)
T KOG2890|consen   66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALL-LYMITDNHVYL----YI  140 (326)
T ss_pred             hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHH-HHHHhcCceEE----EE
Confidence            68999999999999999999999999999999999999999999987666655554332211 11111111222    13


Q ss_pred             CCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHhHhhcccceeeee-cCCCCcccccccchHHHHHHHHHHHhh
Q 020597          244 PALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRII-EGNSNISGSAHLGGAAVAALAWARIRR  321 (324)
Q Consensus       244 ~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~~~~l~~~l~~~~-~~~~~vs~~aHLgG~l~G~l~~~~~r~  321 (324)
                      +..|..|.+.|++.++-..+|+..+...-..++..+.++...+.+.++..+ ......+...-..|..+++.|..+.++
T Consensus       141 ~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~  219 (326)
T KOG2890|consen  141 PIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQR  219 (326)
T ss_pred             EeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheeccc
Confidence            478999999999999999999986543111111111233322222221111 111223444445677777777666554

>COG5291 Predicted membrane protein [Function unknown]

Probab=98.01  E-value=3.7e-07  Score=82.40  Aligned_cols=170  Identities=15%  Similarity=0.069  Sum_probs=102.8

Q ss_pred             CCCeEEeeeeeccceeeeehcc--CccccccceeEeeccccccchhhhhhhcccccch-hHHHhhhhhhhhhcccccccc
Q 020597          123 SSEVVYGLIIANTAVFMLWRIA--DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV-EHIVSNMIGLYFFGMSIGRTL  199 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~--~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~-~HLl~Nm~~L~~fG~~lE~~~  199 (324)
                      .||+|+.+..+..++-++-.+.  .+...+.   ..|-.+..-|+||++|+..+-++- +.+++|.+.+|...+.+|+-.
T Consensus        19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly---~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~   95 (313)
T COG5291          19 IPPITRYMTLLISAVTILVYVDLVSPWYSLY---YSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC   95 (313)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhcCccceee---echhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc
Confidence            6788877666555555443332  2211111   133344566999999999888876 999999999999999999853


Q ss_pred             -ChH--HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeech
Q 020597          200 -GPE--YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPV  276 (324)
Q Consensus       200 -G~~--~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~i  276 (324)
                       ++.  .+....+.+.+.--.++...                   ..+++=-+|.+..+-..+...+|+.++.+++.+++
T Consensus        96 f~~~lv~Y~~yl~~~~l~i~a~s~I~-------------------gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v  156 (313)
T COG5291          96 FNTSLVEYFWYLLVISLVIFAISNIY-------------------GGISALGTSFSATITYIWSKRNPRAIIQFFGFISV  156 (313)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHh-------------------cchhhhcchhhhheeeeeeecCCceEEEEEEeeec
Confidence             443  44433332222111111111                   11222234555556666667789999999999999


Q ss_pred             hhHHHhHhhcccceeeeec------CCCCcccccccchHHHHHH
Q 020597          277 PAFLLGVFLIGKDMLRIIE------GNSNISGSAHLGGAAVAAL  314 (324)
Q Consensus       277 p~~~l~~~~l~~~l~~~~~------~~~~vs~~aHLgG~l~G~l  314 (324)
                      |.++++.+.++++++.--.      .+--+.|.-|-.|-+.|.+
T Consensus       157 ~gkYlP~Illgfsfl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi  200 (313)
T COG5291         157 PGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIYPMI  200 (313)
T ss_pred             chhhhhHHHHHHHHHhcCCccceeeeeeeeccccccccchhhhh
Confidence            9999999888877653210      0001345556666665543

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=0.12  Score=47.76  Aligned_cols=102  Identities=16%  Similarity=0.205  Sum_probs=67.7

Q ss_pred             eeEeeccccc--cchhhhhhhcccccchhHHHhhhhhhhhhccccccccChHHHHHHHHhhcccccchhhhhhhhhhhcc
Q 020597          153 FTISLDNFLS--GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS  230 (324)
Q Consensus       153 f~l~p~~i~~--gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~~fl~~yl~s~i~g~l~~~l~~~~~~~~~  230 (324)
                      |.++.+.+..  .|+||++.+.|.-.+-..+.+-.+.+|.+ +.+|+.+|+.+|..+.+.+++.+-+....+..+... .
T Consensus        37 f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il~~l~~~-~  114 (323)
T KOG4463|consen   37 FGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVILLSLLKD-T  114 (323)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHHHHHHHH-H
Confidence            3444444432  49999999999999998888888877776 679999999999999888888777765543322111 0


Q ss_pred             cccceeeeCCCCCCCCCcccchhhhhhhhhhcCCc
Q 020597          231 KRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPK  265 (324)
Q Consensus       231 ~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~  265 (324)
                      .+         +.-..+.-|.+|+.+.-+-...|-
T Consensus       115 ~~---------nl~~~qp~~liFa~~~~~y~~ip~  140 (323)
T KOG4463|consen  115 TA---------NLLTSQPYGLIFASFIPFYLDIPV  140 (323)
T ss_pred             Hh---------hhhhcCCCceeeeeccceEEEecc
Confidence            11         223456666777766433333343

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	9e-21
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	1e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 87.4 bits (217), Expect = 9e-21
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 24/200 (12%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           +   L      +++  ++     +               +   I+    H+   HI+ N+
Sbjct: 11  ITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNL 70

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
              + FG  I RT G   LL LY+  +                            S    
Sbjct: 71  SWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYV------------------SGPAF 112

Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAH 305
            G SG V A++      +      FD        LL    +G            +  +AH
Sbjct: 113 FGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALG---FISPLFGVEMGNAAH 169

Query: 306 LGGA---AVAALAWARIRRR 322
           + G     +     +++R+ 
Sbjct: 170 ISGLIVGLIWGFIDSKLRKN 189

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 22/192 (11%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           V + ++IA   VF+  +I   + +        D  L        T A  H  + HI+ N+
Sbjct: 6   VTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNL 65

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
           +  ++ G ++ + LG   L+ + +  A+        +                  S    
Sbjct: 66  LWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKF------------------SGPWF 107

Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAH 305
            G SG V A+M        +      +          ++++            +++  AH
Sbjct: 108 GGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIV---AGWFDLFGMSMANGAH 164

Query: 306 LGGAAV-AALAW 316
           + G AV  A+A+
Sbjct: 165 IAGLAVGLAMAF 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 53/370 (14%), Positives = 95/370 (25%), Gaps = 108/370 (29%)

Query: 4   LLSLKQLASKSNFLKNP--TNFTF-SKPFTCHPNVQKRPLSSFSK---------HPFHPT 51
            L  KQ      F++     N+ F   P              + +           F   
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 52  FSWRSQQSLSLKTHAFLFNPLLARRFF---------TSLLSSQLRKSFFDGKVLFFRAQF 102
              R Q  L L+       P  A+            T +            KV     + 
Sbjct: 130 NVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKTWVALDVCL----SYKVQ---CKM 180

Query: 103 PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMA------------ 150
             + F      W + L+   S E V  L +       L    DP + +            
Sbjct: 181 DFKIF------WLN-LKNCNSPETV--LEMLQK----LLYQIDPNWTSRSDHSSNIKLRI 227

Query: 151 NNFTISLDNFLSGRLH------------------------TLITSAFSHIDVEHIVSNMI 186
           ++    L   L  + +                         L+T+ F    V   +S   
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSAAT 285

Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL----VYHAFLAMS----SKRQG--MW 236
             +        TL P+ +  L     +      L    +      +S    S R G   W
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 237 VVDPSRTPALGASGAVNAIMLLDI-FLNPKAT--LYFDFFI-----PVPAFLLGVF---L 285
             D  +         +  I+   +  L P     ++    +      +P  LL +    +
Sbjct: 345 --DNWKHVNC---DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 286 IGKDMLRIIE 295
           I  D++ ++ 
Sbjct: 400 IKSDVMVVVN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 49/358 (13%), Positives = 97/358 (27%), Gaps = 121/358 (33%)

Query: 3   RLLSLKQLASKSNFLKNPTNFTFS-----KPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQ 57
           ++L   +    ++FL   T    S        T          S   K        +   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLK--------YLDC 313

Query: 58  QSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSW 117
           +   L       NP        S+++  +R                          W +W
Sbjct: 314 RPQDLPREVLTTNPRR-----LSIIAESIRD---------------------GLATWDNW 347

Query: 118 LRQYGSSEVVYGLIIANT----------------AVF------------MLWR---IADP 146
            +     ++    II ++                +VF            ++W     +D 
Sbjct: 348 -KHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 147 KFMANNF-TISL-----DNFLSGRLHTLITSAFSHIDVE---HIVSNMIGLYFFGMSIGR 197
             + N     SL            + ++       ++ E   H   +++  Y    +I +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALH--RSIVDHY----NIPK 457

Query: 198 TLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM---------WVVDPSR--TPAL 246
           T   + L+  Y+         ++ +H       +R  +         ++    R  + A 
Sbjct: 458 TFDSDDLIPPYLDQYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 247 GASGAVNAIMLLDIFLNPKATLYFDFFI---PVPAFLLGVFLIGKDMLRIIEGNSNIS 301
            ASG++    L  +        Y  +     P    L+   L   D L  IE N   S
Sbjct: 515 NASGSILNT-LQQL------KFYKPYICDNDPKYERLVNAIL---DFLPKIEENLICS 562

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.94

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=6.2e-30  Score=223.90  Aligned_cols=176  Identities=19%  Similarity=0.252  Sum_probs=140.1

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~  202 (324)
                      .+|+|..++++|+++|+++...+...+.+++.++|+.+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~   82 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG   82 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            56789999999999999887765444456677788777789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhh---cCCceeEEEEeeechhhH
Q 020597          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIF---LNPKATLYFDFFIPVPAF  279 (324)
Q Consensus       203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~---~~p~~~~~l~~~i~ip~~  279 (324)
                      +++.+|+++++.+++++.+..                +  ..++||||+++|++++...   ..|+.+..    ++.+..
T Consensus        83 ~fl~~yl~~~i~~~l~~~~~~----------------~--~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~  140 (181)
T 2xov_A           83 KLIVITLISALLSGYVQQKFS----------------G--PWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLI  140 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----------------C--SCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----------------C--CCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHH
Confidence            999999999999999876642                1  1389999999999997754   56766542    344544


Q ss_pred             HHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHHHhhc
Q 020597          280 LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR  322 (324)
Q Consensus       280 ~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~r~g  322 (324)
                      .+..+.++.++...  ..+++|+.||++|+++|++++..++|+
T Consensus       141 ~~~~~~~~~~~~~~--~~~~v~~~aHlgG~l~G~l~~~~~~~~  181 (181)
T 2xov_A          141 IFALIWIVAGWFDL--FGMSMANGAHIAGLAVGLAMAFVDSLN  181 (181)
T ss_dssp             HHHHHHHHHHHTTS--SCCSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHHHHhcC
Confidence            33333333333322  136899999999999999999888874

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.94  E-value=9.5e-30  Score=225.43  Aligned_cols=175  Identities=17%  Similarity=0.183  Sum_probs=135.9

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~  202 (324)
                      .+++|..++++|+++|+++...+.....+++.++|+.+..+|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.
T Consensus         8 ~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~   87 (196)
T 2nr9_A            8 QGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSV   87 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence            46789999999999999887765444456677888777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhc---CCceeEEEEeeechhhH
Q 020597          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFL---NPKATLYFDFFIPVPAF  279 (324)
Q Consensus       203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~---~p~~~~~l~~~i~ip~~  279 (324)
                      +++.+|+++++++++++.+..                +  ..++||||+++|++++.+..   .|+.     ..++.+..
T Consensus        88 ~~l~~yl~~~~~~~l~~~~~~----------------~--~~~vGaSGai~gl~g~~~~~~~~~~~~-----~~~~~~~~  144 (196)
T 2nr9_A           88 KLLMLYVVASAITGYVQNYVS----------------G--PAFFGLSGVVYAVLGYVFIRDKLNHHL-----FDLPEGFF  144 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----------------C--SCCCCSHHHHHHHHHHHHHHHHSSTTS-----CCCCCSST
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----------------C--CCeeeHHHHHHHHHHHHHHHHHhcchh-----hcchHHHH
Confidence            999999999999999876642                1  12899999999999976542   3332     12344444


Q ss_pred             HHhHhhcccceeeeecCCCCcccccccchHHHHHHHHHHHhh
Q 020597          280 LLGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR  321 (324)
Q Consensus       280 ~l~~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~r~  321 (324)
                      .+..+.+..++.... ..+++|+.||++|+++|++++..+++
T Consensus       145 ~~~~~~~~~~~~~~~-~~~~v~~~aHlgG~l~G~l~~~~~~~  185 (196)
T 2nr9_A          145 TMLLVGIALGFISPL-FGVEMGNAAHISGLIVGLIWGFIDSK  185 (196)
T ss_dssp             TTTTTTTTHHHHSCS-SCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-cCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333221 23589999999999999998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	1e-12
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	3e-11

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 21/189 (11%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           V + ++IA   VF+  +I   + +        D  L        T A  H  + HI+ N+
Sbjct: 6   VTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNL 65

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
           +  ++ G ++ + LG   L+ + +  A+        +                       
Sbjct: 66  LWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS------------------GPWF 107

Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAH 305
            G SG V A+M        +       ++     +  +  I      +     +++  AH
Sbjct: 108 GGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFDLF--GMSMANGAH 164

Query: 306 LGGAAVAAL 314
           + G AV   
Sbjct: 165 IAGLAVGLA 173

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 30/200 (15%), Positives = 57/200 (28%), Gaps = 24/200 (12%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           +   L      +++  ++     +               +   I+    H+   HI+ N+
Sbjct: 8   ITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNL 67

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
              + FG  I RT G   LL LY+  +                                 
Sbjct: 68  SWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGP------------------AF 109

Query: 246 LGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLGVFLIGKDMLRIIEGNSNISGSAH 305
            G SG V A++      +      FD        LL    +G            +  +AH
Sbjct: 110 FGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALG---FISPLFGVEMGNAAH 166

Query: 306 LGGAA---VAALAWARIRRR 322
           + G     +     +++R+ 
Sbjct: 167 ISGLIVGLIWGFIDSKLRKN 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.92
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.91

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=3.9e-28  Score=211.50  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=134.1

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~  202 (324)
                      .+|+|..++++|+++|+++.....+.+......++....++|+||++|+.|+|.|+.|+++||+.++.+|..+|+.+|+.
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~   84 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSV   84 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999877655444444444556667789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHh
Q 020597          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG  282 (324)
Q Consensus       203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~  282 (324)
                      +++.+|+++++.+++++....                  ..+.+|+||+++|++++.+...+..+....  .+.+.....
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~------------------~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~--~~~~~~~~~  144 (189)
T d2nr9a1          85 KLLMLYVVASAITGYVQNYVS------------------GPAFFGLSGVVYAVLGYVFIRDKLNHHLFD--LPEGFFTML  144 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH------------------CSCCCCSHHHHHHHHHHHHHHHHSSTTSCC--CCCSSTTTT
T ss_pred             hhhhHHHHHHHHHHHHHHhcC------------------CCCcccchHHHHHHHHHHHHHHHHhhhHhc--cHHHHHHHH
Confidence            999999999999998766542                  245799999999999888776655543221  222222111


Q ss_pred             HhhcccceeeeecCCCCcccccccchHHHHHHHHHHHhh
Q 020597          283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR  321 (324)
Q Consensus       283 ~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~r~  321 (324)
                      ...+.++.... ...+++|+.||++|+++|+++++..+|
T Consensus       145 ~~~~~~~~~~~-~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         145 LVGIALGFISP-LFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             TTTTTHHHHSC-SSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            12222222211 124689999999999999999876654

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.9e-27  Score=203.33  Aligned_cols=176  Identities=18%  Similarity=0.189  Sum_probs=133.3

Q ss_pred             CCCeEEeeeeeccceeeeehccCccccccceeEeeccccccchhhhhhhcccccchhHHHhhhhhhhhhccccccccChH
Q 020597          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (324)
Q Consensus       123 ~~~vt~~li~inv~vfll~~~~~~~~~~~~f~l~p~~i~~gq~WrLlTs~F~H~~~~HLl~Nm~~L~~fG~~lE~~~G~~  202 (324)
                      .+|+|..++++|+++|+++.........++...+++...++|+||++|++|+|.|+.|+++||+.++.+|+.+|+.+|++
T Consensus         3 ~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~   82 (180)
T d3b45a1           3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG   82 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccch
Confidence            57899999999999999876655444445555666777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhhhhhhhhcccccceeeeCCCCCCCCCcccchhhhhhhhhhcCCceeEEEEeeechhhHHHh
Q 020597          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGASGAVNAIMLLDIFLNPKATLYFDFFIPVPAFLLG  282 (324)
Q Consensus       203 ~fl~~yl~s~i~g~l~~~l~~~~~~~~~~g~g~~l~~~~~~~~vGaSG~I~gll~~~~~~~p~~~~~l~~~i~ip~~~l~  282 (324)
                      +++.+|+++++.++++..+..                  .....|+||+++|++++.....++.+.... ..+.......
T Consensus        83 ~~~~~~~~~~~~g~l~~~~~~------------------~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
T d3b45a1          83 KLIVITLISALLSGYVQQKFS------------------GPWFGGLSGVVYALMGYVWLRGERDPQSGI-YLQRGLIIFA  143 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH------------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSC-CCCHHHHHHH
T ss_pred             hheeeeeHHHHHHHHHHHHHh------------------ccccccccchHHHHHHHHHHHhhhcchhHH-hhHHHHHHHH
Confidence            999999999999999877653                  235789999999999988876555433221 1122112111


Q ss_pred             HhhcccceeeeecCCCCcccccccchHHHHHHHHHHH
Q 020597          283 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI  319 (324)
Q Consensus       283 ~~~l~~~l~~~~~~~~~vs~~aHLgG~l~G~l~~~~~  319 (324)
                      .+.+.....  ....+++++.||++|+++|+++++..
T Consensus       144 ~~~~~~~~~--~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         144 LIWIVAGWF--DLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHHHT--TSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HhccCchHHHHHHHHHHHHHHHHHHH
Confidence            111111111  11246899999999999999988753